lowQualScore : 11 1 1 1 1 111 11111 11111 222222 11 11111111 1111111 1111111111
lowQualScore : 11 6 8 0 7 2 5 8 6 4 7 77 666 4 33 5555 2 3 0 5 777 8888888 44 33 66666 2 2 5 33 8888888888888 000 55555 4444 00000 4 4444 99 2 2 33 66666 444444 2 44 3 4 8 555 2 6666 0 33 555 00000000 77777 0 6666 5555 3 9 3333333 3 2 66666 444 77 0000000000
lowQualScore : .. . . . . . . . . . . .. ... . .. .... . . . . ... ....... .. .. ..... . . . .. ............. ... ..... .... ..... . .... .. . . .. ..... ...... . .. . . . ... . .... . .. ... ........ ..... . .... .... . . ....... . . ..... ... .. ..........
lowQualScore : 00 7 8 7 3 3 6 0 1 4 3 77 444 3 99 3333 5 4 7 4 222 1111111 33 77 22222 4 5 0 44 1111111111111 222 66666 7777 99999 4 7777 55 7 7 99 11111 555555 9 11 1 5 6 000 9 1111 1 99 000 44444444 11111 3 1111 9999 1 2 1111111 1 9 66666 777 77 0000000000
consensus : ATAA--ATTTTGTCATTTTCCTAGCGAAATATTTCATTTTTAAATGTAAAATGCAAAGCGATACA-CCAAG-CTTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAACAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGG-------CG-CTC--AA-----TAAA-A-TT-T--GAATAA-----TCA-----AA--NATAGCAAC-----C----TTA----TATAATCAAC-AT----CAATAT-GT-ATTGA--TCT-----TAT-----AA-TGAACATG-AT-TAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTT----TATAAAT--GTG---T--------ATTGT-----TATATA----AT--A-ACTT-GATA-ATGTGA-------AAAT-G-AAAA---A-ATAAACGGGCTGCCATTTG---GTAACT-NAAAAAAAAAAAAAAAAAT
Reference ( gi|5 ) : ATAA--ATTTTGTTATTCTTTTAGCGACATATTTCATTTTTAAATGTAAAATGCAAAGCGATATA-CCATG-CTTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAATAT---AGAACAA--ATC----TTAGCC-CAAGCCAGATCCAAACTGGAAACGCATAATAGGAAATGG-------CA-CTC--AA-----TAAA-A-TT-T--GAATAA-----TCA-----AA--TATAGCAAC-----C----TTA----TATAATCAAC-AT----CAGCAT-GT-ATTGA--TCT-----TAA-----AA-TGAACATT-AT-TAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTT----TATAAAT--GTG---T--------ATTGT-----TGTATA----AT--A-ACTT-GATA-ATGTGA-------AAAT-G-AAAA---A-ATAAACGGGCTGCCATTTG---GCAACT-CAAAAANNNNNNNNNNAATG
gi|2 : ATAATGACTTTTTCATT-TTTTAGCGAAATATTTCATTTTTATATATAAAATGCAAAGCGATACATCCA-G-CTTTTGCAACTATCTTTGATATTTAAAATGAATGTAAAA-CAT---A-AACAA--ATC----TTAGCC-GAAGCGAGATTAAAACTAGAAACGCATAATAGAAAATGG-------CG-ATC--TA-----TAAA-A-TT-T--GAATAT-----AAA-----AA--AATATCAAC-----C----TTA----GATAATCCAC-AT----CA
gi|13 : caaaaatatatatgacacatacatttcgaaaacaactaacaatgttactacaattgtaataaagctcaacaaaaatggaatgactcctatgacaatctgagctggaaaaaaatatttatatcaccgataacatgtacatgttcattcgagattgagttatttcaaaagaagtatttatacagaattatacccacaaataagttaatttaagcatgtaaaaacagtacaacattttttggactgtgctcatacaaaacatttctagacacaaacaaatgatttcttatcacaaaacggtatatatgtagcatttaattttaaaaatatatcattgggcaaccatgacgacaacacaaagcataaaacaATAA--ATTTGCTTATTATCCTAGAAA-ATATGTCATTTTTAAATGTAAAATGCAATCCAATACA-CCAAG-TTTTGACAACTTTATGAGATATTTAAGA-GAATGTAAAA--AC---AGAACAA--ATC----TTAACC-CAGTCGAAATCCAAACTAGAAACGCAAAACA-GAAATGG-------CG-TTC--AC-----TGAA-ATTT-T--AAATAA-----TTA-----GG--AATAGCAAC-----C----TTA----AGTACTTAAC-AT----CAaatagt
gi|27 : aacaaatcatttattatcacaaaatggtattaatgtagcattaaaatttaaaaatatatattattgggcatccatgacaacaaacaaaacaaaaaaataattATGA--CTTTT-TCATT-TTTTAGCGAAATATTTCATTTTTATATATAAAATGCAAAGCGATACATCCA-G-CTTTTGCAACTATCTTTGATATTTAAAATGAATGT-AAAACAT---A-AACAata
gi|3 : taATAC--ATTTTGTTATTTTCCTAGCAAAAT-TTTCATTTTTAAATGTAAAATACAAAGCGATACA-CC
gi|4 : aatatactttgaatgatgacatacatatcacagaacaaatactgaactcgtggaaagaaaaatttaaacatgaaaaattaaacggcaacgacaaaacatttttcattgatagcgttttaaagatactaaaaccaaatactaaaacttaaaccaaatacaatttttttttcgaaaataactaccaatgttacaaataaagctcaacaaaaatggaatgactcttctttatatcaccgattacatgtactatttattcgatataagtattcatacaaaattatacccacaaataagttcttacacaaatgccatttagtaaattcaagttaatgttaattctgcactatgcattttgggggactgtgctcctatacaacatttttagacaaaaacaaacgatttcttatcacaaaacggtgttaatgtagcatttcattttaaaaatatatcattgggcatccatgacgacatcataaaacaaaacacaataA--ATTTTGTTGTTTTCCTAGAAAAATGATTTATTTTTAAATGTAAAATGCAAAACGATACA-CCAAG-CTTCAACAACTATCTTAGAAATTTAAGA-GAATATAAAAACAT---AAAAGAA--AAC----TTAACC-CAAGC-------------AAAATGCATAATAAAAAATGG-------CA-TTC--AA-----TAAA-A-TTCT--GAATAT-----TTA-----GA--AATAGCAAC-----C----TTA-----ATAATCAAC-AT----CAATAT-GT-ATAGA--TCT-----AAT-----AT-TGTACATTAAT-TAATCAcagct
gi|1 : aactgtaatatttatacagaattatacccacaagttcttacacaaatgccatatagtaaattcaagttttggtcaattctataatatgcatgtaatacaatacaacattttctttggaactgtgctcatctagacaaaaacaaacagtttttttttttcacaaaacagtattggtgaagcatttaatttcaaaaatatatcattgggtatccatgacaacacaaaacaaagcactTGTCATTTTTTT-GCATAATGATTCAACCTTGAATGTAAA-TACAAAATGTTACA-TCAGA-CTTTGATAACCTTCTTAAACATCCAAAC-TAATATAAACACGT---AGAACAA--AGC----TTAGCC-CAA---AGA---AAA-TCGAAACGCATATTAAAAAAT---------CT-CTA--AAGTCTCTAAACA-TT-TTGAAATAACAAGGTTA-----AAACTGTA-CAGC-----CATATTTA----T-TAATTTACGATTGTGCTGCAT-GT-ATTgatctctctcgctccctctgtctctctctctcatttttgctacaataattcatattattcccgttttaaa
gi|6 : aggcttaacactaatactaaaatggagtaactcatcttaatatcatgtcttatatgaacaaaacctttgcatcccaattttaatgtaatatgtactcgatatttagtttatttattattaaattctatatagaactatgcccacaagttcttacacagatgtcatatagtatatactgcaatgtgcaagtaaaatcatcattttagataaacgttgcaacatccctttacaggaatgtgcttatatctaacaatgtttgacaaaataaaatgttttttatcattaaattattacttaacatccatgacaagaacacaaaacaataataaataatacatttgaaataATATATTTCATTATAAAATGTATAGTGCAACCCAATAAA-CC-TGACTTTGACATCTGTCTGATATATCTAATA-TATTACTAACGCAT---AGAACAATTATTGAAGTTAGCCATAGGAGAGATCGAAACTAGGATCACATAAT-GAAAACGG-------CT-TTC--AA-----TAAT-C-TC-T--AAACAT-----TTA-----GA--GACAGCATC-----T----TTA-----AAAAACAAC-AC----TAAGAC-GTAATTAAATTCTATA--TAT-----AT-TGATCATT-ATCTAAcagaacgtaatctctctctctctttcgttcacaatattgcaaaacgttactcctgttttactataaatacgtgttatatttaattgtaattgtgtataattttttatgtgagaatgtatataaacaggctaccatttgataacaacacaaaagaaaatagatgaagtgttacgaatt
gi|22 : cacatataatttcatatgagtttccatcaattctgcgatatatacatgttgcaggggtgtggaggtgctcatatcaaacaattatacacaaatcaaaatgatgtgtttatcataagaccgtatcgctgtaccatttaaattgatggcatgatgacaacgcaaataaagtacaattacgaactttgcatttgaggaaTTTCATTTTTAAATGTAAAATACAAAGCGATACA-CCCAG-CTTTGACAACAATCTTAGATATTTAAGA-GAATGTAAAAACAT---AGAACAA--ATC----TCAACC-CAAGCAAAAT-TAAACTAGAAACGCATTATAAAAAAAG-----------TTC--TA-----TAAA-A-TTCT--TAATAG-----TTA-----GA--AATAGCAAC-----C----TTA----AAATATTAACTAT--------AT-GT-ATGAA--T-T-----TAA-----AATTGTACATT-A
gi|12 : atTGTAAAATGCAAAGCGATATA-CCATG-CTTTGATAACTATCTTAGATATTTAAAA-GAATGTAAAAATAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGGAAATGG-------CA-CTC--AA-----TAAA-A-TT-T--GAATAA-----TCA-----AA--TATAGCAAC-----C----TTA----TATAATCAAC-AT----CAATAT-GT-ATTGA--TCT-----TAT-----AA-TGAACATG-AT-TAATCAgt
gi|31 : TGTAAAATGCAAAGAGCTACA-CCAAG-CTTTGACAACTATTTTAGATATTTAAAA-GAATGTAAAAATAT---AAAACAA--ATC----TTAGCT-CAAGCAAGATCCAAACTGGAAACGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgtcatataataa
gi|23 : TTTGACAATTATCTTAAATATTTTAAA-CAATATAAAATCAT---TGAACAA--ATC----T-------AAGCC-----CAA---------GCAAAAT------TTA-------CATCTCTGAA-----TA------T-T--GAG-AA-------A-----AA-----AACAAC-----C----TTAAAGATATTATCAAC-AG----CAACAT-GT-ATTTA--T-T-----TAAT----AG-TGCACATA-AT-TAA
gi|25 : gctcatatacaacatttctggacaaaatgattttttctggacaaaatgatttttgtagcaATCTTTAATAGCGAAAA-TAATGCAAAGACATTAAACAACAA--AGC----CTGTCC-AAAGCGATATCGAAACTTGTCTTGCATAATAAGAAATGA-------TT-TCC--AA-----TAAA-
gi|14 : taAA--ATC----TCAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGG-------CA-CTC--AA-----TAAA-A-TT-T--GAATAA-----TCT-----AA--TATAGCAAC-----C----TTA----TATAATTAAC-AT----CAATAT-GT-ATTGA--TCT-----TAT-----AA-TGAACATG-AT-TAATCAtgtgttaacatttagaaacaattttcttaaaaataaataatatttcaatatttatgaatttacgattgcattgcaatgt
gi|16 : AA--ATC----TTAGCC-CAAGCGAGATCCAAACTAGAAATGCATAATAGAAAATGG-------CA-CTC--AA-----TAAA-A-TA-T--GAATAA-----TCC-----AA--TATAGCAAC-----C----TTA----TATAATTAAC-AT----TAATAT-GT-ATTGA--ACT-----TAT-----AA-TGAACATG-AT-TCATCAtcatcatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacacacacattttcacaacactgctaatagtactcatgtttataaatgtgtattgttatacaataacttgataatgtgaaaatgaaaaaataaacgggctgccatttggtaactcaaaaaaaacaaaaaaaac
gi|11 : A--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGG-------CA-CTC--AA-----TAAA-A-TT-T--GAATAA-----TCC-----AA--TATAGCAAC-----C----TTA----TATAATTAAC-AT----CAATAT-GT-ATTGA--TCT-----TAT-----AA-TGAACATG-AT-TAATCAtctctctctctcacacacattttcacaacactgcttatagtactcatatttataaatgcgtattattatataataacttgataatgtgaaaatgaaaaaataaaccggctgccatttcgcaactaaaaaaaccccccaaaaaacccaa
gi|9 : --ATC----TTAGCC-GAAGCGAGATTAAAACTAGAAACGCATAATAGAAAATGG-------CG-ATC--TA-----TAAA-A-TT-T--GAATAT-----AAA-----AA--AATATCAAC-----C----TTA----GATAATCCAC-AT----CAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttatataataacttgataatgtgaaaatgaaaaaataaacgggctgccatttggtaactcaaaaaaaaaaaaaaaaa
gi|10 : TC----TTAGCC-CAAGCCAGATCCAAACTGGAAACGCATAATAGGAAACGGCACTCAACA-CTC--AA-----TAAA-A-TT-T--GAATAA-----TCA-----AA--TATAGCAAC-----C----TTA----TATAATCGAC-AT----CAATATAGT-ATTGA--TCTAA---TAATTGATAA-TGAACATG-AT-TAATCAaatagtgtacgtaatataagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatatatatatatttttcattcattttcactctctctatcattttcactacaatgagttatattactcatgttttaaatgtaaattactatataattttataatgtaatttgtttaagtgaaaatgaatataaacgggctgccatttggtaactaaaagaaaataagaa
gi|32 : C----TTAGCC-CAAGCGAAATCCGAACT-AAAACACATTCT---AAATAG-------CA-cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctccctccctccctctttctcacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttgtataataacttgataatgtgaaaatgaaaaaataaaccggctgccatttggcaactaaaaaaaataata
gi|7 : AAATCTAAACTAGAAATGCATAAT--GAATTTG-------CT-TTT--AA-----TAA-----T-T--CATTAA-----TCATTTAGAA---AAAGCAACGGTTAC----CTA-----AAAAACAAA-AA----CAATAT-TT-ATAGA--TATACATGTAAT----AT-TGAACATA-AT-TAATTAaccttaagtaatcaacatcaatatattttgatctaattagtgtacattaattaatc
gi|17 : gagaacattagcaacaaaaacataaaaaaA-----TAAA-A-TT-T--GAATAA-----TCC-----AA--TATAGCAAC-----C----TTA----TATAATTAAC-AT----CAATAT-GT-ATTGA--TCT-----TAT-----AA-TGAACATG-AT-TAATCAtaccctatccacctttctgtctatctgtaggtggctctctctctatttctctcatttctattacattacaccatgttactcctgttttagtatagatgcattatactgtgtacaattgtatgcgtatatgtaaaatggggcttggtaaaacttggtaactaacaaaaaaaacaaaaactaagctaaacgtcatgcaatccatttaagatccaaactaagctgtatttttattat
gi|19 : A-A-TT-T--GAAT--------CA-----AA--TTTAGCAAC-----C----TTA----TATAATTAAC-AT----CAATAT-GT-ATTGA--TCT-----TAT-----AA-TGAACATG-AT-TCATCAtcatcatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttatataataacttgataatgtgaaaatgaaaaaaataaacgggctgccatttggtaactcaaaaaaacaaacaa
gi|32 : ATAGCAAC-----C----TTA----AGTAATCAAC-AT----CAATAT-AT-TTTGA--TC------TAATT---AG-TGTACATTAAT-TAATtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacactttttcacaacactgtttatagtgctcatgtttaaaaatgtgtattgttatataataactgataatgggaaaatgaaaaaataaacgggctgccattgggcaactcaacaacaacaaaaa
gi|18 : cttagcccaagcgaaatccgaactaaaacacattctaaGCAAC-----C----ATA----TATAATCAAC-AT----CAGTAT-GT-ATTGA--TCT-----TAT-----AA-TGAACATG-AT-TAATCAc
gi|9 : ATCATTTTCACTACAATGAGTTATAT---TACT-CATGTT----T-TAAAT--GTA---A--------ATTAC-----TATATA----AT------TT-TATA-ATGTAATTTGTTTAAGT-G-AAAATGAATATAAACGGGCTGCCATTTG---GTAACT-AAAAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttcactacactgcttatagtactcatgtttttaaatgtatcttgttatgtaataacttgataatgtgaaaatgaaaaataaacggactgccatttggcaactaaaaaaaaaatactaaaaa
gi|21 : atcttagccgaagcgagattaaaactagaaacgcataatagaaaatggcgatctataaaatttgaatataaaaaaatatcaaccttagataatccacatcaaatagtgtacgtaatataagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatatatatatatttttcattcattttcactctctctTCATTTTCACTACACTAAATCGTAG---TACT-T---TT----TTTAAAG--GCAGAAT--------ATTAT------GTACA----AT--GTACTTTGATATATGTGA-------ACATTG-AAAA------TAAACGAGCTACCACTTG---GTAACT-AAAAaaataagaa
gi|15 : ttcactttctctcTCATTTTCACTACACTATATCATAT---CACT-CCTGTT----TA-AAAT--GCA---T--------ATTAC-----TGTGTACAATGT--A-ATTT-TGTATATG-GAT------AAAT----AAA---A-ATAAACGGGCTAATACTAG---GTAATTCCAAAAACAATATATTCAGTcaattgtacttatgtataaatctcttcaaatagtttccatttatcatgtttgtattatatgtattatctcttcatatatataaggaaatatatacatttt
gi|12 : cagttagaaatatcaaccttcagttaaataaacaacacgaatatatatgtatttaaaattatacattaattaatcagatccctctgtctctgtctcCATTTTCACAACACTGC-TTATAG---TACT-CATGTT----TATAAAT--GTG---T--------ATTGT-----CATATA----AT--A-Atgaatttataatacaacctggttaatgattagaaccaattttatagtcatttcgttatt
gi|11 : tgtaaaatgcaaagcgatataccatgctttgataactatcttagatatttaaaagaatgtaaaaatatagaacaaatcttagcccaagcgagatccaaactggaaacgcataataggaaatggcactcaataaaatttgaataatcaaatatagcaaccttatataatcaacatcaatatgtattgatcttataatgaacatgattaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacaCATTTTCACAACACTGC-TTATAG---TACT-CATGTT----TATAAAT--GTG---T--------ATTGT-----TATATA----AT--A-ACTT-GATA-ATGTGA-------AAAT-G-AAAA---A-ATAAACGGGCTGCCATTTG---GTAACT-CAAAAAAAAAAAAAAAAA
gi|14 : aatcttagcccaagcgagatccaaactggaaacgcataatagaaaatggcactcaataaaatttgaataatccaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaCATTTTCACAACACTGC-TAATAG---TACT-CATGTT----TATAAAT--GTG---T--------ATTGT-----TATACA----AT--A-ACTT-GATA-ATGTGA-------AAAT-G-AAAA---A-ATAAACGGGCTGCCATTTG---GTAACT-CAAAAAAAACAAAAAAAA
gi|10 : aaatctcagcccaagcgagatccaaactggaaacgcataatagaaaatggcactcaataaaatttgaataatctaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcatcatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacacacaCATTTTCACAACACTGC-TTATAG---TACT-CATGTT----TATAAAT--GTG---T--------ATTGT-----TGTATA----AT--A-ACTT-GATA-ATGTGA-------AAAT-G-AAAA---A-ATAAACCGGCTGCCATTTG---GCAACT-AAAAAAc
gi|17 : tcttagcccaagccagatccaaactggaaacgcataataggaaacggcactcaacactcaataaaatttgaataatcaaatatagcaaccttatataatcgacatcaatatagtattgatctaataattgataatgaacatgattaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctccctccctccctctttctcaCATTTTCACAACACTGC-TTATAG---TACT-CATGTT----TATAAAT--GTG---T--------ATTGT-----TATATA----AT--A-ACTT-GATA-ATGTGA-------AAAT-GAAAAA---A-ATAAACGGGCTGCCATTTG---GTAACT-CAAAAAaataata
gi|16 : ataaaatttgaataatccaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcatcatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacaCATTTTCACAACACTGC-TTATAG---TACT-CATATT----TATAAAT--GCG---T--------ATTAT-----TATATA----AT--A-ACTT-GATA-ATGTGA-------AAAT-G-AAAA---A-ATAAACCGGCTGCCATTTC---GCAACT-AAAAAAACCCCCCAAAAAaacaaacaa
gi|19 : aaatcttagcccaagcgagatccaaactagaaatgcataatagaaaatggcactcaataaaatatgaataatccaatatagcaaccttatataattaacattaatatgtattgaacttataatgaacatgattcatcatctctctctctcacacaTTTTCACAACACTGT-TTATAG---TGCT-CATGTT----TAAAAAT--GTG---T--------ATTGT-----TATATA----AT--A-AC-T-GATA-ATGGGA-------AAAT-G-AAAA---A-ATAAACGGGCTGCCATTGG---GCAACT-CAACAAacccaa
gi|18 : aatttgaatcaaatttagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattcatcatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacactTTTTCACTACACTGC-TTATAG---TACT-CATGTT----TTTAAAT--GTA---T--------CTTGT-----TATGTA----AT--A-ACTT-GATA-ATGTGA-------AAAT-G--AAA---A-ATAAACGGACTGCCATTTG---GCAACT-AAAAAAAAAATACTAAAAcaacaaaaa
gi|1 : gcaaccatatataatcaacatcagtatgtattgatcttataatgaacatgattaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTTCACAATATTGC---AAAACGTTACT-CCTGTTTTACTATAAATACGTG---TTATATTTAATTGTAATTGTGTATA----AT-----TTT---TT-ATGTGA-------GAAT-G---TA---T-ATAAACAGGCTACCATTTGATAACAACA-CAAAAGAAAATAGATGAAa
gi|29 : aggcttaacactaatactaaaatggagtaactcatcttaatatcatgtcttatatgaacaaaacctttgcatcccaattttaatgtaatatgtactcgatatttagtttatttattattaaattctatatagaactatgcccacaagttcttacacagatgtcatatagtatatactgcaatgtgcaagtaaaatcatcattttagataaacgttgcaacatccctttacaggaatgtgcttatatctaacaatgtttgacaaaataaaatgttttttatcattaaattattacttaacatccatgacaagaacacaaaacaataataaataatacatttgaaatatgtcatttttttgcataatgattcaaccttgaatgtaaatacaaaatgttacatcagactttgataaccttcttaaacatccaaactaatataaacacgtagaacaaagcttagcccaaagaaaatcgaaacgcatattaaaaaatctctaaagtctctaaacattttgaaataacaaggttaaaactgtacagccatatttattaatttacgattgtgctgcatgtattcagaacgtaatctctctctctctttcgCACTGC-TTATAG---TACT-CATGTT----TTTAAAT--GTA---T--------ATT-T-----TATGTA----AT--A-ATTT-GATA-ATGTGA-------ACAT-G-AAAT---A--TAAACGGGCTGCCATTTG---GCAACT-CAAAAgtgttacgaatt
gi|26 : C-CTGTAT---TACTGCAT-------TATACAT--GT-------------ACTAT------GTACA----ATGTA-ACTT-GGTATATGTGA-------AAAT-G-AAAA------TAAATGGGCTATCATTCG---ATAACT-AAAAAcaaaaaaaaaaaa
gi|37 : ctataaatcatattac-AAAA---A-ATAAACGGGCTGCCATTTG---GTAACT--AAAAAGAAAAAAAAAAAtaaataaaa
gi|40 : atgaaAA---A-ATAAACGGGCTGCCATTTG---GTAACT-AAAAAAa
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): ATAACTACCCAAGTTACAAATAAACAAAGCTCAGCCCAAATGAAATGACTTCTATGAAAATCCGATCCGGAAAAATAAAATATTTGAGTGTATTTCAATAAAATAATTGTATTGACTCATTATCACAGATAAGTTCTTACATAAACTCAAGTATATGCCAAATCTGCAATATGAATGTAGAAACAAATCAAGATCTACTTTTTTAATCATTTCAGGACAAAAACAAATATTTTATCATTTAATTCTAAAAATGAATCACTGAGCATCCATGACGACGACACAAAACAAAAAATCAATTGTTTTTGTAATTTTCCCAGAAAAAAAGTCATTTTAAATGTAAACTATGTAAATACATATTTGAAATAAATCTTAGCCCAATCAAAATATAA
Unaligned ( gi|20 ): GGAAGTATCAAACATCGACGATGATATTATATGGAATAATCCATTCATAAAAAGATAAACATATGGCTAGATAAAGGAATCAAATATATTCAACAACTTAATTACAGAAACGATAGCGTTGAATATTCTTATATGATAAAACATTTTAGAAGACACAATTCATGGAAAGAAAAACTTAAACAACACAAAATGAACGCAACAAACCGTTTCGCATGGATAGGAATTGAACTGTGTTGA
Unaligned ( gi|24 ): ACCAATAAAACTATATATGAGACATACATTTCGAAAACAACTACAAATGTTACAAATAAAGCTCAACAAATATGCAATGGCTCCTTAAAAAACATATTTATATCACCGATTACATGTTCTATTTATTCGAGATTGACGTTATTTCAATATAATTATTTATACAGAATTATACCCACATATAATTTATATATTATATGATATAATAAA
Unaligned ( gi|28 ): TACAACATTTCTGTGACTGCGCTCATATACAACATTTCCGGACAAAAAACAAATGATTTCTTATCACAAAACGGTAATAGTGTGAATTAAATAACATTGAAGACGAATACCAT
Unaligned ( gi|30 ): ACCAAATAACATTTATATTTATATAAACACATATTTCGAAAAATTTCCCTTTTCTCTAATAAAGTTCAACAAAACTAGAATGACTTATATGGAAATCTGAACCAAAAAA
Unaligned ( gi|33 ): TTTTCACTACACTAAATCATGTTACTCCTGTTTAAAGTGCATACTTATGTGTACAATGTAACGTTGTATATATAAAAA
Unaligned ( gi|34 ): CAAATTAAATTATATATGAGATATACATTTCGAAAACAACTACAAATGTTACAAAAATGGAATGGCTCTTA
Unaligned ( gi|35 ): TTAATGCACAGTGTTATGTACGATTTGTATATGTAAAATTTGAAAATAAACAGGATACCACTAAGTAACT
Unaligned ( gi|36 ): CATGTAGAAACGATACAACATTTCTGTGACTGTGACTGAACTCATGTACAACATTTC
Unaligned ( gi|38 ): TGTAAATTTAATGTCAATAAAATCTCTATATCAATGTCTGTAATATATGTATT
Unaligned ( gi|39 ): ATTTTTACTACATTAAATCATATAACTCCTGTTTTAAGTGCATAATT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1111 1111 1111111
lowQualScore : 77 2 33 5 0 66 2 3 6 555 3 33 5555 2 00 4 4 8888888 55 4 33 3 0 1 4444 000000 22 2 2 2 2 33 0 999999999 2 2 5 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 444 2 0000 444 0 0000 777 2 5 7 8888888 0000000 2 2 555555 33 33 1 666666 44
lowQualScore : .. . .. . . .. . . . ... . .. .... . .. . . ....... .. . .. . . . .... ...... .. . . . . .. . ......... . . . . .................................................................................................... . . ... . .... ... . .... ... . . . ....... ....... . . ...... .. .. . ...... ..
lowQualScore : 99 5 99 6 9 11 1 3 7 888 1 77 0000 4 99 5 1 1111111 66 7 22 9 1 0 5555 666666 99 1 2 4 4 44 4 999999999 5 5 7 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 0 444 5 6666 111 5 0000 444 5 0 5 1111111 6666666 5 4 777777 11 11 8 888888 22
consensus : ATAA--ATTTTGTCATTTTCCTAGCGAAATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATACACCNAGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAACAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCGCTCA-------ATAAAA--TT-TG--AATANTCAAANATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATG---CGTATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAACTAAAAAAA------AAAAA--AAAAAAT
Reference ( family-958 ) : ATAA--ATTTTGTCATTTTCCTAGCGAAATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATACACCAAGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAACAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCGCTCA-------ATAAAA--TT-TG--AATAATCAAANATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATG---TGTATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAACTNAAAAAA------AAAAA--AAAAAAT
gi|1 : TGTCATTTTTTT-GCATAATGA--TTCAACCTTGAATGTAAA-TACAAAATGTTACATCAGAC-TTTGATAACCTTCTTAAACATCCAAAC-TAATATAAACACGT---AGAACAA--AGC----TTAGCC-CAA---AGA---AAA-TCGAAACGCATATTAAAAAAT----CTC---------TAAAGTCTC-TA--AACATTTTGAAATAACAAGGTT----A------AAACTGTACA--GC-CATA-T-TT-ATTAA--T-T---T-----A-CGA-T
gi|1 : aggcttaacactaatactaaaatggagtaactcatcttaatatcatgtcttatatgaacaaaacctttgcatcccaattttaatgtaatatgtactcgatatttagtttatttattattaaattctatatagaactatgcccacaagttcttacacagatgtcatatagtatatactgcaatgtgcaagtaaaatcatcattttagataaacgttgcaacatccctttacaggaatgtgcttatatctaacaatgtttgacaaaataaaatgttttttatcattaaattattacttaacatccatgacaagaacacaaaacaataataaataatacatttgaaataTTCACAATATTGC---AAAACGTTACT-CCTGTTTTACTATAAATA---CGTGTTAT-ATTTA----ATTGTAATTGTGTATA-ATTTTTTATGTGA-------GAAT-G-TATA------TAAACAGGCT--ACCA--TTTGATAAC--AACACA------AAAGA--AAAtgtgctgcatgtattcagaacgtaatctctctctctctttcgttcacaatattgcaaaacgttactcctgttttactataaatacgtgttatatttaattgtaattgtgtataattttttatgtgagaatgtatataaacaggctaccatttgataacaacacaaaagaaaatagatgaagtgttacgaatt
gi|10 : aggcttaacactaatactaaaatggagtaactcatcttaatatcatgtcttatatgaacaaaacctttgcatcccaattttaatgtaatatgtactcgatatttagtttatttattattaaattctatatagaactatgcccacaagttcttacacagatgtcatatagtatatactgcaatgtgcaagtaaaatcatcattttagataaacgttgcaacatccctttacaggaatgtgcttatatctaacaatgtttgacaaaataaaatgttttttatcattaaattattacttaacatccatgacaagaacacaaaacaataataaataatacatttgaaatatgtcatttttttgcataatgattcaaccttgaatgtaaatacaaaatgttacatcagactttgataaccttcttaaacatccaaactaatataaacacgtagaacaaagcttagcccaaagaaaatcgaaacgcatattaaaaaatctctaaagtctctaaacattttgaaataacaaggttaaaactgtacagccatatttattaatttacgattgtgctgcatgtattcagaacgtaatctctctctctctttcgTC----TTAGCC-CAAGCCAGATCCAAACTGGAAACGCATAATAGGAAACGGCACTCAACACTCAATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCGACA--TC-AATA-TAGT-ATTGA--TCTAA-TAATTGA-TAA-TGAACA-TGAT-TAATCAtagatgaagtgttacgaatt
gi|10 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATG---TGTATTGTTGTATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACCGGCT--GCCA--TTTGGCAACTAAAAAAA------ATAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctccctccctccctctttctcacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttgtataataacttgataatgtgaaaatgaaaaaataaaccggctgccatttggcaactaaaaaaaataata
gi|11 : tcttagcccaagccagatccaaactggaaacgcataataggaaacggcactcaacactcaataaaatttgaataatcaaatatagcaaccttatataatcgacatcaatatagtattgatctaataattgataatgaacatgattaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctccctccctccctctttctcaA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCAta
gi|11 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATG---TGTATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAACTCAAAAAA------AAAAA--AAAAAAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttatataataacttgataatgtgaaaatgaaaaaataaacgggctgccatttggtaactcaaaaaaaaaaaaaaaaa
gi|12 : aatcttagcccaagcgagatccaaactggaaacgcataatagaaaatggcactcaataaaatttgaataatccaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaTGTAAAATGCAAAGCGATATACCATGC-TTTGATAACTATCTTAGATATTTAAAA-GAATGTAAAAATAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGGAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|12 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATG---TGTATTGTCATATA----AT---AAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgtcatataataa
gi|13 : tgtaaaatgcaaagcgatataccatgctttgataactatcttagatatttaaaagaatgtaaaaatatagaacaaatcttagcccaagcgagatccaaactggaaacgcataataggaaatggcactcaataaaatttgaataatcaaatatagcaaccttatataatcaacatcaatatgtattgatcttataatgaacatgattaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacaATAA--ATTTGCTTATTATCCTAG-AAAATAT--GTCATTTTTAAATGTAAAATGCAATCCAATACACCAAGT-TTTGACAACTTTATGAGATATTTAAGA-GAATGTAAAAAC-----AGAACAA--ATC----TTAACC-CAGTCGAAATCCAAACTAGAAACGCAAAACAG-AAATGGCGTTCA-------CTGAAAT-TT-TA--AATAATTAGGAATAGCAACCTT----AA-----GTACTTAACA--TC-AATA-
gi|14 : aacaaatcatttattatcacaaaatggtattaatgtagcattaaaatttaaaaatatatattattgggcatccatgacaacaaacaaaacaaaaaaataattAA--ATC----TCAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCTAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|14 : CATTTTCACAACACTGC-TAATAG---TACT-CATGTTT----ATAAATG---TGTATTGTTATACA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAACTCAAAAAA------AACAA--AAAAAAtcatcatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacacacacattttcacaacactgctaatagtactcatgtttataaatgtgtattgttatacaataacttgataatgtgaaaatgaaaaaataaacgggctgccatttggtaactcaaaaaaaacaaaaaaaac
gi|15 : aaatctcagcccaagcgagatccaaactggaaacgcataatagaaaatggcactcaataaaatttgaataatctaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcatcatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacacacaTCATTTTCACTACACTATATCATAT---CACT-CCTGTTT----A-AAATG---CATATTACTGTGTACAATGT---AATT-TT-GTATAT-------G-GAT------AAAT----AAA---A-ATAAACGGGCT--AATA--CTAGGTAATTCCAAAAA------CAAc
gi|16 : cagttagaaatatcaaccttcagttaaataaacaacacgaatatatatgtatttaaaattatacattaattaatcagatccctctgtctctgtctcAA--ATC----TTAGCC-CAAGCGAGATCCAAACTAGAAATGCATAATAGAAAATGGCACTCA-------ATAAAA--TA-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TT-AATA-T-GT-ATTGA--ACT---T-----A-TAA-TGAACA-TGAT-TCATCAtatattcagttgaatttataatacaacctggttaatgattagaaccaattttatagtcatttcgttatt
gi|16 : CATTTTCACAACACTGC-TTATAG---TACT-CATATTT----ATAAATG---CGTATTATTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACCGGCT--GCCA--TTTCGCAACTAAAAAAACCCCCCAAAAA--tctctctctctcacacacattttcacaacactgcttatagtactcatatttataaatgcgtattattatataataacttgataatgtgaaaatgaaaaaataaaccggctgccatttcgcaactaaaaaaaccccccaaaaaacccaa
gi|17 : aaatcttagcccaagcgagatccaaactagaaatgcataatagaaaatggcactcaataaaatatgaataatccaatatagcaaccttatataattaacattaatatgtattgaacttataatgaacatgattcatcatctctctctctcacaca-------ATAAAA--TT-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCAcccaa
gi|17 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATG---TGTATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-GAAAAA---A-ATAAACGGGCT--GCCA--TTTGGTAACTCAAAAAA------ACAAA--CAAtcatcatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttatataataacttgataatgtgaaaatgaaaaaaataaacgggctgccatttggtaactcaaaaaaacaaacaa
gi|18 : ataaaatttgaataatccaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcatcatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacaGCAACCAT----AT-----ATAATCAACA--TC-AGTA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|18 : TTTTCACTACACTGC-TTATAG---TACT-CATGTTT----TTAAATG---TATCTTGTTATGTA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G--AAA---A-ATAAACGGACT--GCCA--TTTGGCAACTAAAAAAA------AAATACTAAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttcactacactgcttatagtactcatgtttttaaatgtatcttgttatgtaataacttgataatgtgaaaatgaaaaataaacggactgccatttggcaactaaaaaaaaaatactaaaaa
gi|19 : gcaaccatatataatcaacatcagtatgtattgatcttataatgaacatgattaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAA--TT-TG--AAT---CAAATTTAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TCATCA
gi|19 : TTTTCACAACACTGT-TTATAG---TGCT-CATGTTT----AAAAATG---TGTATTGTTATATA----AT---AAC--TG-ATA-AT-------GGGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTGGGCAACTCAACAAC------AACAA--AAAtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacactttttcacaacactgtttatagtgctcatgtttaaaaatgtgtattgttatataataactgataatgggaaaatgaaaaaataaacgggctgccattgggcaactcaacaacaacaaaaa
gi|2 : aatttgaatcaaatttagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattcatcatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacactATAATGACTTTTTCATTTTT-TAGCGAAATAT--TTCATTTTTATATATAAAATGCAAAGCGATACATCCAGC-TTTTGCAACTATCTTTGATATTTAAAATGAATGTAAAA-CAT---A-AACAA--ATC----TTAGCC-GAAGCGAGATTAAAACTAGAAACGCATAATAGAAAATGGCGATCT-------ATAAAA--TT-TG--AATATAAAAAAATATCAACCTT----AG-----ATAATCCACA--TC-AA
gi|21 : caaaaatatatatgacacatacatttcgaaaacaactaacaatgttactacaattgtaataaagctcaacaaaaatggaatgactcctatgacaatctgagctggaaaaaaatatttatatcaccgataacatgtacatgttcattcgagattgagttatttcaaaagaagtatttatacagaattatacccacaaataagttaatttaagcatgtaaaaacagtacaacattttttggactgtgctcatacaaaacatttctagacacaaacaaatgatttcttatcacaaaacggtatatatgtagcatttaattttaaaaatatatcattgggcaaccatgacgacaacacaaagcataaaacaTCATTTTCACTACACTAAATCGTAG---TACT-T---TTT----TTAAAGG---CAGAATATTATGTACAATGT---ACTT-TG-ATATAT-------GTGA-------ACATTG-AAAA------TAAACGAGCT--ACCA--CTTGGTAACTAAAACAA------atagt
gi|22 : ttcactttctctcT--TTCATTTTTAAATGTAAAATACAAAGCGATACACCCAGC-TTTGACAACAATCTTAGATATTTAAGA-GAATGTAAAAACAT---AGAACAA--ATC----TCAACC-CAAGCAAAAT-TAAACTAGAAACGCATTATAAAAAA---AGTTCT-------ATAAAA--TTCTT--AATAGTTAGAAATAGCAACCTT----AA-----AATATTAAC---T---ATA-T-GT-ATGAA--T-T---T-----A-AAATTGTACA-Tttgtacttatgtataaatctcttcaaatagtttccatttatcatgtttgtattatatgtattatctcttcatatatataaggaaatatatacatttt
gi|23 : atAGCATTTGACAATTATCTTAAATATTTTAAA-CAATATAAAATCAT---TGAACAA--ATC----TAAGCC-CAAGCAAAATTTA-----------CAT------------CTCTGA-------ATA------T-TG--AG-----AAAAA-AACAACCTTAAAGAT-----ATTATCAACA--GC-AACA-T-GT-ATTTA--TTT---A-----A-TAG-TGCACA-TAAT-TAAtagt
gi|25 : gctcatatacaacatttctggacaaaatgattttttctggacaaaatgatttttgtATCTTTAATAGCGAAAA-TAATGCAAAGACATTAAACAACAA--AGC----CTGTCC-AAAGCGATATCGAAACTTGTCTTGCATAATAAGAAATGATTTCCA-------AT-AAA--TG-TGTTAACATTTAGAAA---CAATTTT----CTTAAAAATAAATAATATTTC-AATA-T-TT-ATGAA--T-T---T-----A-CGA-T
gi|26 : taC-CTGTAT---TACTGCAT---T----ATACATG---T--ACTAT-GTACA----ATGT-AACT-TG-GTATAT-------GTGA-------AAAT-G-AAAA------TAAATGGGCT--ATCA--TTCGATAACTAAAAATA------AATAA--AAtgcattgcaatgt
gi|27 : ctataaatcatattacATGA--CTTTT-TCATTTTT-TAGCGAAATAT--TTCATTTTTATATATAAAATGCAAAGCGATACATCCAGC-TTTTGCAACTATCTTTGATATTTAAAATGAATGT-AAAACAT---A-AACA
gi|29 : taCACTGC-TTATAG---TACT-CATGTTT----TTAAATG---TATATT-TTATGTA----AT---AATT-TG-ATA-AT-------GTGA-------ACAT-G-AAAT---A--TAAACGGGCT--GCCA--TTTGGCAACTCAAAACA------AAAAA--AAAAAA
gi|3 : ATAC--ATTTTGTTATTTTCCTAGCAAAAT-T--TTCATTTTTAAATGTAAAATACAAAGCGATACACCCAGC-T
gi|31 : aatatactttgaatgatgacatacatatcacagaacaaatactgaactcgtggaaagaaaaatttaaacatgaaaaattaaacggcaacgacaaaacatttttcattgatagcgttttaaagatactaaaaccaaatactaaaacttaaaccaaatacaatttttttttcgaaaataactaccaatgttacaaataaagctcaacaaaaatggaatgactcttctttatatcaccgattacatgtactatttattcgatataagtattcatacaaaattatacccacaaataagttcttacacaaatgccatttagtaaattcaagttaatgttaattctgcactatgcattttgggggactgtgctcctatacaacatttttagacaaaaacaaacgatttcttatcacaaaacggtgttaatgtagcatttcattttaaaaatatatcattgggcatccatgacgacatcataaaacaaaacacaataTGTAAAATGCAAAGAGCTACACCAAGC-TTTGACAACTATTTTAGATATTTAAAA-GAATGTAAAAATAT---AAAACAA--ATC----TTAGCT-CAAGCAAGATCCAAACTGGAAACGC
gi|32 : C----TTAGCC-CAAGCGAAATCCGAACT-AAAACACAT
gi|32 : AAATAGCAACCTT----AA-----GTAATCAACA--TC-AATA-T-AT-TTTGA--TCT---A-----ATTAG-TGTACATTAAT-TAATCtctaaatagcaaccttaagtaatcaacatcaatatattttgatctaattagtgtacattaattaatc
gi|35 : cttagcccaagcgaaatccgaactaaaacacattctAATG---CACAGTGTTATGTA-----C---GATT-TGTATA--T-------GT-A-------AAAT-T-TGAA---A-ATAAACAGGAT--ACCA--CTAAGTAACT
gi|37 : tt-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAACTAAAAAGA------AAAAA--AAAAAA
gi|4 : atgaaA--ATTTTGTTGTTTTCCTAGAAAAATGA--TTTATTTTTAAATGTAAAATGCAAAACGATACACCAAGC-TTCAACAACTATCTTAGAAATTTAAGA-GAATATAAAAACAT---AAAAGAA--AAC----TTAACC-CAAGCAAAAT-------------GCATAATAAAAAATGGCATTCA-------ATAAAA--TTCTG--AATATTTAGAAATAGCAACCTT----A------ATAATCAACA--TC-AATA-T-GT-ATAGA--TCT---A-----A-TAT-TGTACATTAAT-TAATCA
gi|40 : aactgtaatatttatacagaattatacccacaagttcttacacaaatgccatatagtaaattcaagttttggtcaattctataatatgcatgtaatacaatacaacattttctttggaactgtgctcatctagacaaaaacaaacagtttttttttttcacaaaacagtattggtgaagcatttaatttcaaaaatatatcattgggtatccatgacaacacaaaacaaagcactAA---A-ATAAACGGGCT--GCCA--TTTGGTAACTAAAAAAA------AAAAgatctctctcgctccctctgtctctctctctcatttttgctacaataattcatattattcccgttttaaa
gi|5 : tATAA--ATTTTGTTATTCTTTTAGCGACATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATATACCATGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAATAT---AGAACAA--ATC----TTAGCC-CAAGCCAGATCCAAACTGGAAACGCATAATAGGAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCAACA--TC-AGCA-T-GT-ATTGA--TCT---T-----A-AAA-TGAACA-TTAT-TAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATG---TGTATTGTTGTATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGCAACTCAAAAAN------NNNNN--NNNNAAT
gi|6 : A--ACTTTG-CATTTG---AG-GAAATATATTTCATTATAAAATGTATAGTGCAACCCAATAAACCTGAC-TTTGACATCTGTCTGATATATCTAATA-TATTACTAACGCAT---AGAACAATTATTGAAGTTAGCCATAGGAGAGATCGAAACTAGGATCACATAAT-GAAAACGGCTTTCA-------ATAATC--TC-TA--AACATTTAGAGACAGCATCTTT----A------AAAAACAACA--CT-AAGA-C-GTAATTAAATTCTATAT-----A-TAT-TGATCA-TTATCTAAg
gi|7 : cacatataatttcatatgagtttccatcaattctgcgatatatacatgttgcaggggtgtggaggtgctcatatcaaacaattatacacaaatcaaaatgatgtgtttatcataagaccgtatcgctgtaccatttaaattgatggcatgatgacaacgcaaataaagtacaattacgTCATTTCTATTACATTACACCATGT---TACT-CCTGTTTTAGTATAGATGCATTATACTGT-GTACA----AT--------TG--TA--T-------GCGT-------ATAT-G-TAAA---A--TG---GGGCTTGGTAAAACTTGGTAACTAACAAAA------AAAAC--AAAAA
gi|9 : gagaacattagcaacaaaaacataaaaaaaaatctaaactagaaatgcataatgaatttgcttttaataattcattaatcatttagaaaaagcaacggttacctaaaaaacaaaaacaatatttatagatatacatgtaatattgaacataattaattataccctatccacctttctgtctatctgtaggtggctctctctctatttctc--ATC----TTAGCC-GAAGCGAGATTAAAACTAGAAACGCATAATAGAAAATGGCGATCT-------ATAAAA--TT-TG--AATATAAAAAAATATCAACCTT----AG-----ATAATCCACA--TCAAATAGT-GT-Actaagctaaacgtcatgcaatccatttaagatccaaactaagctgtatttttattat
gi|9 : ATCATTTTCACTACAATGAGTTATAT---TACT-CATGTTT-----TAAATG---TAAATTACTATATA----AT------T-TT-ATA-AT-------GTAATTTGTTTAAGT-G-AAAATGAATATAAACGGGCT--GCCA--TTTGGTAACTAAAAGAA------AATAA--GAAcgtaatataagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatatatatatatttttcattcattttcactctctctatcattttcactacaatgagttatattactcatgttttaaatgtaaattactatataattttataatgtaatttgtttaagtgaaaatgaatataaacgggctgccatttggtaactaaaagaaaataagaa
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATAACTACCCAAGTTACAAATAAACAAAGCTCAGCCCAAATGAAATGACTTCTATGAAAATCCGATCCGGAAAAATAAAATATTTGAGTGTATTTCAATAAAATAATTGTATTGACTCATTATCACAGATAAGTTCTTACATAAACTCAAGTATATGCCAAATCTGCAATATGAATGTAGAAACAAATCAAGATCTACTTTTTTAATCATTTCAGGACAAAAACAAATATTTTATCATTTAATTCTAAAAATGAATCACTGAGCATCCATGACGACGACACAAAACAAAAAATCAATTGTTTTTGTAATTTTCCCAGAAAAAAAGTCATTTTAAATGTAAACTATGTAAATACATATTTGAAATAAATCTTAGCCCAATCAAAATATAA
Unaligned ( gi|20 ): GGAAGTATCAAACATCGACGATGATATTATATGGAATAATCCATTCATAAAAAGATAAACATATGGCTAGATAAAGGAATCAAATATATTCAACAACTTAATTACAGAAACGATAGCGTTGAATATTCTTATATGATAAAACATTTTAGAAGACACAATTCATGGAAAGAAAAACTTAAACAACACAAAATGAACGCAACAAACCGTTTCGCATGGATAGGAATTGAACTGTGTTGA
Unaligned ( gi|24 ): ACCAATAAAACTATATATGAGACATACATTTCGAAAACAACTACAAATGTTACAAATAAAGCTCAACAAATATGCAATGGCTCCTTAAAAAACATATTTATATCACCGATTACATGTTCTATTTATTCGAGATTGACGTTATTTCAATATAATTATTTATACAGAATTATACCCACATATAATTTATATATTATATGATATAATAAA
Unaligned ( gi|28 ): TACAACATTTCTGTGACTGCGCTCATATACAACATTTCCGGACAAAAAACAAATGATTTCTTATCACAAAACGGTAATAGTGTGAATTAAATAACATTGAAGACGAATACCAT
Unaligned ( gi|30 ): ACCAAATAACATTTATATTTATATAAACACATATTTCGAAAAATTTCCCTTTTCTCTAATAAAGTTCAACAAAACTAGAATGACTTATATGGAAATCTGAACCAAAAAA
Unaligned ( gi|33 ): TTTTCACTACACTAAATCATGTTACTCCTGTTTAAAGTGCATACTTATGTGTACAATGTAACGTTGTATATATAAAAA
Unaligned ( gi|34 ): CAAATTAAATTATATATGAGATATACATTTCGAAAACAACTACAAATGTTACAAAAATGGAATGGCTCTTA
Unaligned ( gi|36 ): CATGTAGAAACGATACAACATTTCTGTGACTGTGACTGAACTCATGTACAACATTTC
Unaligned ( gi|38 ): TGTAAATTTAATGTCAATAAAATCTCTATATCAATGTCTGTAATATATGTATT
Unaligned ( gi|39 ): ATTTTTACTACATTAAATCATATAACTCCTGTTTTAAGTGCATAATT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1111 1111 1111111
lowQualScore : 77 2 33 5 0 66 1 3 6 555 3 33 5555 2 00 4 4 8888888 55 4 33 2 0 1 4444 000000 22 2 2 2 2 33 0 999999999 2 2 5 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 444 2 0000 2 444 0 0000 777 2 5 7 8888888 0000000 2 2 555555 33 33 33 666666 44
lowQualScore : .. . .. . . .. . . . ... . .. .... . .. . . ....... .. . .. . . . .... ...... .. . . . . .. . ......... . . . . .................................................................................................... . . ... . .... . ... . .... ... . . . ....... ....... . . ...... .. .. .. ...... ..
lowQualScore : 99 5 99 6 9 11 0 3 7 888 1 77 0000 4 99 5 1 1111111 66 7 22 6 1 0 5555 666666 99 1 2 4 4 44 4 999999999 5 5 7 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 0 444 5 6666 4 111 5 0000 444 5 0 5 1111111 6666666 5 4 777777 11 11 11 888888 22
consensus : ATAA--ATTTTGTCATTTTCCTAGCGAAATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATACACCNAGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAACAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCGCTCA-------ATAAAA--TT-TG--AATANTCAAANATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGCGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAAA------AAAAA--AAAAAAT
Reference ( family-958 ) : ATAA--ATTTTGTCATTTTCCTAGCGAAATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATACACCNAGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAACAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCGCTCA-------ATAAAA--TT-TG--AATANTCAAANATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGCGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAAA------AAAAA--AAAAAAT
gi|1 : TGTCATTTTTTT-GCATAATGA--TTCAACCTTGAATGTAAA-TACAAAATGTTACATCAGAC-TTTGATAACCTTCTTAAACATCCAAAC-TAATATAAACACGT---AGAACAA--AGC----TTAGCC-CAA---AGA---AAA-TCGAAACGCATATTAAAAAAT----CTC---------TAAAGTCTC-TA--AACATTTTGAAATAACAAGGTT----A------AAACTGTACA--GC-CATA-T-TT-ATTAA--T-T---T-----A-CGA-T
gi|1 : aggcttaacactaatactaaaatggagtaactcatcttaatatcatgtcttatatgaacaaaacctttgcatcccaattttaatgtaatatgtactcgatatttagtttatttattattaaattctatatagaactatgcccacaagttcttacacagatgtcatatagtatatactgcaatgtgcaagtaaaatcatcattttagataaacgttgcaacatccctttacaggaatgtgcttatatctaacaatgtttgacaaaataaaatgttttttatcattaaattattacttaacatccatgacaagaacacaaaacaataataaataatacatttgaaataTTCACAATATTGC---AAAACGTTACT-CCTGTTTTACTATAAATACGT---GTTAT-ATTTA----ATTGTAATTGTGTATA-ATTTTTTATGTGA-------GAAT-G-TATA------TAAACAGGCT--ACCA--TTTGATAA--C-AACACAA------AAGAA--AATAGATtgtgctgcatgtattcagaacgtaatctctctctctctttcgttcacaatattgcaaaacgttactcctgttttactataaatacgtgttatatttaattgtaattgtgtataattttttatgtgagaatgtatataaacaggctaccatttgataacaacacaaaagaaaatagatgaagtgttacgaatt
gi|10 : aggcttaacactaatactaaaatggagtaactcatcttaatatcatgtcttatatgaacaaaacctttgcatcccaattttaatgtaatatgtactcgatatttagtttatttattattaaattctatatagaactatgcccacaagttcttacacagatgtcatatagtatatactgcaatgtgcaagtaaaatcatcattttagataaacgttgcaacatccctttacaggaatgtgcttatatctaacaatgtttgacaaaataaaatgttttttatcattaaattattacttaacatccatgacaagaacacaaaacaataataaataatacatttgaaatatgtcatttttttgcataatgattcaaccttgaatgtaaatacaaaatgttacatcagactttgataaccttcttaaacatccaaactaatataaacacgtagaacaaagcttagcccaaagaaaatcgaaacgcatattaaaaaatctctaaagtctctaaacattttgaaataacaaggttaaaactgtacagccatatttattaatttacgattgtgctgcatgtattcagaacgtaatctctctctctctttcgTC----TTAGCC-CAAGCCAGATCCAAACTGGAAACGCATAATAGGAAACGGCACTCAACACTCAATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCGACA--TC-AATA-TAGT-ATTGA--TCTAA-TAATTGA-TAA-TGAACA-TGAT-TAATCAgaagtgttacgaatt
gi|10 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTGTATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACCGGCT--GCCA--TTTGGCAA--CTAAAAAAA------ATAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctccctccctccctctttctcacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttgtataataacttgataatgtgaaaatgaaaaaataaaccggctgccatttggcaactaaaaaaaataata
gi|11 : tcttagcccaagccagatccaaactggaaacgcataataggaaacggcactcaacactcaataaaatttgaataatcaaatatagcaaccttatataatcgacatcaatatagtattgatctaataattgataatgaacatgattaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctccctccctccctctttctcaA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCAta
gi|11 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTCAAAAAA------AAAAA--AAAAAAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttatataataacttgataatgtgaaaatgaaaaaataaacgggctgccatttggtaactcaaaaaaaaaaaaaaaaa
gi|12 : aatcttagcccaagcgagatccaaactggaaacgcataatagaaaatggcactcaataaaatttgaataatccaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaTGTAAAATGCAAAGCGATATACCATGC-TTTGATAACTATCTTAGATATTTAAAA-GAATGTAAAAATAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGGAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|12 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTCATATA----AT---AAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgtcatataataa
gi|13 : tgtaaaatgcaaagcgatataccatgctttgataactatcttagatatttaaaagaatgtaaaaatatagaacaaatcttagcccaagcgagatccaaactggaaacgcataataggaaatggcactcaataaaatttgaataatcaaatatagcaaccttatataatcaacatcaatatgtattgatcttataatgaacatgattaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacaATAA--ATTTGCTTATTATCCTAG-AAAATAT--GTCATTTTTAAATGTAAAATGCAATCCAATACACCAAGT-TTTGACAACTTTATGAGATATTTAAGA-GAATGTAAAAAC-----AGAACAA--ATC----TTAACC-CAGTCGAAATCCAAACTAGAAACGCAAAACAG-AAATGGCGTTCA-------CTGAAAT-TT-TA--AATAATTAGGAATAGCAACCTT----AA-----GTACTTAACA--TC-AATA-
gi|14 : aacaaatcatttattatcacaaaatggtattaatgtagcattaaaatttaaaaatatatattattgggcatccatgacaacaaacaaaacaaaaaaataattAA--ATC----TCAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCTAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|14 : CATTTTCACAACACTGC-TAATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTATACA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTCAAAAAA------AACAA--AAAAAAtcatcatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacacacacattttcacaacactgctaatagtactcatgtttataaatgtgtattgttatacaataacttgataatgtgaaaatgaaaaaataaacgggctgccatttggtaactcaaaaaaaacaaaaaaaac
gi|15 : aaatctcagcccaagcgagatccaaactggaaacgcataatagaaaatggcactcaataaaatttgaataatctaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcatcatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacacacaTCATTTTCACTACACTATATCATAT---CACT-CCTGTTT----A-AAATGCAT---ATTACTGTGTACAATGT---AATT-TT-GTATAT-------G-GAT------AAAT----AAA---A-ATAAACGGGCT--AATA--CTAGGTAATTCCAAAAACA------Ac
gi|16 : cagttagaaatatcaaccttcagttaaataaacaacacgaatatatatgtatttaaaattatacattaattaatcagatccctctgtctctgtctcAA--ATC----TTAGCC-CAAGCGAGATCCAAACTAGAAATGCATAATAGAAAATGGCACTCA-------ATAAAA--TA-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TT-AATA-T-GT-ATTGA--ACT---T-----A-TAA-TGAACA-TGAT-TCATCAtatattcagttgaatttataatacaacctggttaatgattagaaccaattttatagtcatttcgttatt
gi|16 : CATTTTCACAACACTGC-TTATAG---TACT-CATATTT----ATAAATGCGT---ATTATTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACCGGCT--GCCA--TTTCGCAA--CTAAAAAAACCCCCCAAAAA--tctctctctctcacacacattttcacaacactgcttatagtactcatatttataaatgcgtattattatataataacttgataatgtgaaaatgaaaaaataaaccggctgccatttcgcaactaaaaaaaccccccaaaaaacccaa
gi|17 : aaatcttagcccaagcgagatccaaactagaaatgcataatagaaaatggcactcaataaaatatgaataatccaatatagcaaccttatataattaacattaatatgtattgaacttataatgaacatgattcatcatctctctctctcacaca-------ATAAAA--TT-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCAcccaa
gi|17 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-GAAAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTCAAAAAA------ACAAA--CAAtcatcatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttatataataacttgataatgtgaaaatgaaaaaaataaacgggctgccatttggtaactcaaaaaaacaaacaa
gi|18 : ataaaatttgaataatccaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcatcatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacaGCAACCAT----AT-----ATAATCAACA--TC-AGTA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|18 : TTTTCACTACACTGC-TTATAG---TACT-CATGTTT----TTAAATGTAT---CTTGTTATGTA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G--AAA---A-ATAAACGGACT--GCCA--TTTGGCAA--CTAAAAAAA------AAATACTAAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttcactacactgcttatagtactcatgtttttaaatgtatcttgttatgtaataacttgataatgtgaaaatgaaaaataaacggactgccatttggcaactaaaaaaaaaatactaaaaa
gi|19 : gcaaccatatataatcaacatcagtatgtattgatcttataatgaacatgattaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAA--TT-TG--AAT---CAAATTTAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TCATCA
gi|19 : TTTTCACAACACTGT-TTATAG---TGCT-CATGTTT----AAAAATGTGT---ATTGTTATATA----AT---AAC--TG-ATA-AT-------GGGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTGGGCAA--CTCAACAAC------AACAA--AAAtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacactttttcacaacactgtttatagtgctcatgtttaaaaatgtgtattgttatataataactgataatgggaaaatgaaaaaataaacgggctgccattgggcaactcaacaacaacaaaaa
gi|2 : aatttgaatcaaatttagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattcatcatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacactATAATGACTTTTTCATTTTT-TAGCGAAATAT--TTCATTTTTATATATAAAATGCAAAGCGATACATCCAGC-TTTTGCAACTATCTTTGATATTTAAAATGAATGTAAAA-CAT---A-AACAA--ATC----TTAGCC-GAAGCGAGATTAAAACTAGAAACGCATAATAGAAAATGGCGATCT-------ATAAAA--TT-TG--AATATAAAAAAATATCAACCTT----AG-----ATAATCCACA--TC-AA
gi|21 : caaaaatatatatgacacatacatttcgaaaacaactaacaatgttactacaattgtaataaagctcaacaaaaatggaatgactcctatgacaatctgagctggaaaaaaatatttatatcaccgataacatgtacatgttcattcgagattgagttatttcaaaagaagtatttatacagaattatacccacaaataagttaatttaagcatgtaaaaacagtacaacattttttggactgtgctcatacaaaacatttctagacacaaacaaatgatttcttatcacaaaacggtatatatgtagcatttaattttaaaaatatatcattgggcaaccatgacgacaacacaaagcataaaacaTCATTTTCACTACACTAAATCGTAG---TACT-T---TTT----TTAAAGGCAG---AATATTATGTACAATGT---ACTT-TG-ATATAT-------GTGA-------ACATTG-AAAA------TAAACGAGCT--ACCA--CTTGGTAA--CTAAAACAA------atagt
gi|22 : ttcactttctctcT--TTCATTTTTAAATGTAAAATACAAAGCGATACACCCAGC-TTTGACAACAATCTTAGATATTTAAGA-GAATGTAAAAACAT---AGAACAA--ATC----TCAACC-CAAGCAAAAT-TAAACTAGAAACGCATTATAAAAAA---AGTTCT-------ATAAAA--TTCTT--AATAGTTAGAAATAGCAACCTT----AA-----AATATTAAC---T---ATA-T-GT-ATGAA--T-T---T-----A-AAATTGTACA-Tttgtacttatgtataaatctcttcaaatagtttccatttatcatgtttgtattatatgtattatctcttcatatatataaggaaatatatacatttt
gi|23 : atAGCATTTGACAATTATCTTAAATATTTTAAA-CAATATAAAATCAT---TGAACAA--ATC----TAAGCC-CAAGCAAAATTTA-----------CAT------------CTCTGA-------ATA------T-TG--AG-----AAAAA-AACAACCTTAAAGAT-----ATTATCAACA--GC-AACA-T-GT-ATTTA--TTT---A-----A-TAG-TGCACA-TAAT-TAAtagt
gi|25 : gctcatatacaacatttctggacaaaatgattttttctggacaaaatgatttttgtATCTTTAATAGCGAAAA-TAATGCAAAGACATTAAACAACAA--AGC----CTGTCC-AAAGCGATATCGAAACTTGTCTTGCATAATAAGAAATGATTTCCA-------AT-AAA--TG-TGTTAACATTTAGAAA---CAATTTT----CTTAAAAATAAATAATATTTC-AATA-T-TT-ATGAA--T-T---T-----A-CGA-T
gi|26 : taC-CTGTAT---TACTGCAT---T----ATACATG--T---ACTAT-GTACA----ATGT-AACT-TG-GTATAT-------GTGA-------AAAT-G-AAAA------TAAATGGGCT--ATCA--TTCGATAA--CTAAAAATA------AATAA--AAtgcattgcaatgt
gi|27 : ctataaatcatattacATGA--CTTTT-TCATTTTT-TAGCGAAATAT--TTCATTTTTATATATAAAATGCAAAGCGATACATCCAGC-TTTTGCAACTATCTTTGATATTTAAAATGAATGT-AAAACAT---A-AACA
gi|29 : taCACTGC-TTATAG---TACT-CATGTTT----TTAAATGTAT---ATT-TTATGTA----AT---AATT-TG-ATA-AT-------GTGA-------ACAT-G-AAAT---A--TAAACGGGCT--GCCA--TTTGGCAA--CTCAAAACA------AAAAA--AAAAAA
gi|3 : ATAC--ATTTTGTTATTTTCCTAGCAAAAT-T--TTCATTTTTAAATGTAAAATACAAAGCGATACACCCAGC-T
gi|31 : aatatactttgaatgatgacatacatatcacagaacaaatactgaactcgtggaaagaaaaatttaaacatgaaaaattaaacggcaacgacaaaacatttttcattgatagcgttttaaagatactaaaaccaaatactaaaacttaaaccaaatacaatttttttttcgaaaataactaccaatgttacaaataaagctcaacaaaaatggaatgactcttctttatatcaccgattacatgtactatttattcgatataagtattcatacaaaattatacccacaaataagttcttacacaaatgccatttagtaaattcaagttaatgttaattctgcactatgcattttgggggactgtgctcctatacaacatttttagacaaaaacaaacgatttcttatcacaaaacggtgttaatgtagcatttcattttaaaaatatatcattgggcatccatgacgacatcataaaacaaaacacaataTGTAAAATGCAAAGAGCTACACCAAGC-TTTGACAACTATTTTAGATATTTAAAA-GAATGTAAAAATAT---AAAACAA--ATC----TTAGCT-CAAGCAAGATCCAAACTGGAAACGC
gi|32 : C----TTAGCC-CAAGCGAAATCCGAACT-AAAACACAT
gi|32 : AAATAGCAACCTT----AA-----GTAATCAACA--TC-AATA-T-AT-TTTGA--TCT---A-----ATTAG-TGTACATTAAT-TAATCtctaaatagcaaccttaagtaatcaacatcaatatattttgatctaattagtgtacattaattaatc
gi|35 : cttagcccaagcgaaatccgaactaaaacacattctAATGCAC---AGTGTTATGTA-----C---GATT-TGTATA--T-------GT-A-------AAAT-T-TGAA---A-ATAAACAGGAT--ACCA--CTAAGTAA--CT
gi|37 : tt-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAGA------AAAAA--AAAAAA
gi|4 : atgaaA--ATTTTGTTGTTTTCCTAGAAAAATGA--TTTATTTTTAAATGTAAAATGCAAAACGATACACCAAGC-TTCAACAACTATCTTAGAAATTTAAGA-GAATATAAAAACAT---AAAAGAA--AAC----TTAACC-CAAGCAAAAT-------------GCATAATAAAAAATGGCATTCA-------ATAAAA--TTCTG--AATATTTAGAAATAGCAACCTT----A------ATAATCAACA--TC-AATA-T-GT-ATAGA--TCT---A-----A-TAT-TGTACATTAAT-TAATCA
gi|40 : aactgtaatatttatacagaattatacccacaagttcttacacaaatgccatatagtaaattcaagttttggtcaattctataatatgcatgtaatacaatacaacattttctttggaactgtgctcatctagacaaaaacaaacagtttttttttttcacaaaacagtattggtgaagcatttaatttcaaaaatatatcattgggtatccatgacaacacaaaacaaagcactAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAAA------AAAAgatctctctcgctccctctgtctctctctctcatttttgctacaataattcatattattcccgttttaaa
gi|5 : tATAA--ATTTTGTTATTCTTTTAGCGACATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATATACCATGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAATAT---AGAACAA--ATC----TTAGCC-CAAGCCAGATCCAAACTGGAAACGCATAATAGGAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCAACA--TC-AGCA-T-GT-ATTGA--TCT---T-----A-AAA-TGAACA-TTAT-TAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTGTATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGCAA--CTCAAAAAN------NNNNN--NNNNAAT
gi|6 : A--ACTTTG-CATTTG---AG-GAAATATATTTCATTATAAAATGTATAGTGCAACCCAATAAACCTGAC-TTTGACATCTGTCTGATATATCTAATA-TATTACTAACGCAT---AGAACAATTATTGAAGTTAGCCATAGGAGAGATCGAAACTAGGATCACATAAT-GAAAACGGCTTTCA-------ATAATC--TC-TA--AACATTTAGAGACAGCATCTTT----A------AAAAACAACA--CT-AAGA-C-GTAATTAAATTCTATAT-----A-TAT-TGATCA-TTATCTAAg
gi|7 : cacatataatttcatatgagtttccatcaattctgcgatatatacatgttgcaggggtgtggaggtgctcatatcaaacaattatacacaaatcaaaatgatgtgtttatcataagaccgtatcgctgtaccatttaaattgatggcatgatgacaacgcaaataaagtacaattacgTCATTTCTATTACATTACACCATGT---TACT-CCTGTTTTAGTATAGATGCATTATACTGT-GTACA----AT--------TG--TA--T-------GCGT-------ATAT-G-TAAA---A--TG---GGGCTTGGTAAAACTTGGTAA--CTAACAAAA------AAAAC--AAAAA
gi|9 : gagaacattagcaacaaaaacataaaaaaaaatctaaactagaaatgcataatgaatttgcttttaataattcattaatcatttagaaaaagcaacggttacctaaaaaacaaaaacaatatttatagatatacatgtaatattgaacataattaattataccctatccacctttctgtctatctgtaggtggctctctctctatttctc--ATC----TTAGCC-GAAGCGAGATTAAAACTAGAAACGCATAATAGAAAATGGCGATCT-------ATAAAA--TT-TG--AATATAAAAAAATATCAACCTT----AG-----ATAATCCACA--TCAAATAGT-GT-Actaagctaaacgtcatgcaatccatttaagatccaaactaagctgtatttttattat
gi|9 : ATCATTTTCACTACAATGAGTTATAT---TACT-CATGTTT-----TAAATGTAA---ATTACTATATA----AT------T-TT-ATA-AT-------GTAATTTGTTTAAGT-G-AAAATGAATATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAGAA------AATAA--GAAcgtaatataagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatatatatatatttttcattcattttcactctctctatcattttcactacaatgagttatattactcatgttttaaatgtaaattactatataattttataatgtaatttgtttaagtgaaaatgaatataaacgggctgccatttggtaactaaaagaaaataagaa
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATAACTACCCAAGTTACAAATAAACAAAGCTCAGCCCAAATGAAATGACTTCTATGAAAATCCGATCCGGAAAAATAAAATATTTGAGTGTATTTCAATAAAATAATTGTATTGACTCATTATCACAGATAAGTTCTTACATAAACTCAAGTATATGCCAAATCTGCAATATGAATGTAGAAACAAATCAAGATCTACTTTTTTAATCATTTCAGGACAAAAACAAATATTTTATCATTTAATTCTAAAAATGAATCACTGAGCATCCATGACGACGACACAAAACAAAAAATCAATTGTTTTTGTAATTTTCCCAGAAAAAAAGTCATTTTAAATGTAAACTATGTAAATACATATTTGAAATAAATCTTAGCCCAATCAAAATATAA
Unaligned ( gi|20 ): GGAAGTATCAAACATCGACGATGATATTATATGGAATAATCCATTCATAAAAAGATAAACATATGGCTAGATAAAGGAATCAAATATATTCAACAACTTAATTACAGAAACGATAGCGTTGAATATTCTTATATGATAAAACATTTTAGAAGACACAATTCATGGAAAGAAAAACTTAAACAACACAAAATGAACGCAACAAACCGTTTCGCATGGATAGGAATTGAACTGTGTTGA
Unaligned ( gi|24 ): ACCAATAAAACTATATATGAGACATACATTTCGAAAACAACTACAAATGTTACAAATAAAGCTCAACAAATATGCAATGGCTCCTTAAAAAACATATTTATATCACCGATTACATGTTCTATTTATTCGAGATTGACGTTATTTCAATATAATTATTTATACAGAATTATACCCACATATAATTTATATATTATATGATATAATAAA
Unaligned ( gi|28 ): TACAACATTTCTGTGACTGCGCTCATATACAACATTTCCGGACAAAAAACAAATGATTTCTTATCACAAAACGGTAATAGTGTGAATTAAATAACATTGAAGACGAATACCAT
Unaligned ( gi|30 ): ACCAAATAACATTTATATTTATATAAACACATATTTCGAAAAATTTCCCTTTTCTCTAATAAAGTTCAACAAAACTAGAATGACTTATATGGAAATCTGAACCAAAAAA
Unaligned ( gi|33 ): TTTTCACTACACTAAATCATGTTACTCCTGTTTAAAGTGCATACTTATGTGTACAATGTAACGTTGTATATATAAAAA
Unaligned ( gi|34 ): CAAATTAAATTATATATGAGATATACATTTCGAAAACAACTACAAATGTTACAAAAATGGAATGGCTCTTA
Unaligned ( gi|36 ): CATGTAGAAACGATACAACATTTCTGTGACTGTGACTGAACTCATGTACAACATTTC
Unaligned ( gi|38 ): TGTAAATTTAATGTCAATAAAATCTCTATATCAATGTCTGTAATATATGTATT
Unaligned ( gi|39 ): ATTTTTACTACATTAAATCATATAACTCCTGTTTTAAGTGCATAATT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1111 1111 1111111
lowQualScore : 77 2 33 5 0 66 1 3 6 555 3 33 5555 2 00 4 4 8888888 55 4 33 2 0 1 4444 000000 22 2 2 2 2 33 0 999999999 2 2 5 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 444 2 0000 2 444 0 0000 777 2 5 7 8888888 0000000 2 2 555555 33 33 33 666666 44
lowQualScore : .. . .. . . .. . . . ... . .. .... . .. . . ....... .. . .. . . . .... ...... .. . . . . .. . ......... . . . . .................................................................................................... . . ... . .... . ... . .... ... . . . ....... ....... . . ...... .. .. .. ...... ..
lowQualScore : 99 5 99 6 9 11 0 3 7 888 1 77 0000 4 99 5 1 1111111 66 7 22 6 1 0 5555 666666 99 1 2 4 4 44 4 999999999 5 5 7 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 0 444 5 6666 4 111 5 0000 444 5 0 5 1111111 6666666 5 4 777777 11 11 11 888888 22
consensus : ATAA--ATTTTGTCATTTTCCTAGCGAAATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATACACCNAGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAACAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCGCTCA-------ATAAAA--TT-TG--AATANTCAAANATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGCGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAAA------AAAAA--AAAAAAT
Reference ( family-958 ) : ATAA--ATTTTGTCATTTTCCTAGCGAAATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATACACCNAGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAACAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCGCTCA-------ATAAAA--TT-TG--AATANTCAAANATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGCGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAAA------AAAAA--AAAAAAT
gi|1 : TGTCATTTTTTT-GCATAATGA--TTCAACCTTGAATGTAAA-TACAAAATGTTACATCAGAC-TTTGATAACCTTCTTAAACATCCAAAC-TAATATAAACACGT---AGAACAA--AGC----TTAGCC-CAA---AGA---AAA-TCGAAACGCATATTAAAAAAT----CTC---------TAAAGTCTC-TA--AACATTTTGAAATAACAAGGTT----A------AAACTGTACA--GC-CATA-T-TT-ATTAA--T-T---T-----A-CGA-T
gi|1 : aggcttaacactaatactaaaatggagtaactcatcttaatatcatgtcttatatgaacaaaacctttgcatcccaattttaatgtaatatgtactcgatatttagtttatttattattaaattctatatagaactatgcccacaagttcttacacagatgtcatatagtatatactgcaatgtgcaagtaaaatcatcattttagataaacgttgcaacatccctttacaggaatgtgcttatatctaacaatgtttgacaaaataaaatgttttttatcattaaattattacttaacatccatgacaagaacacaaaacaataataaataatacatttgaaataTTCACAATATTGC---AAAACGTTACT-CCTGTTTTACTATAAATACGT---GTTAT-ATTTA----ATTGTAATTGTGTATA-ATTTTTTATGTGA-------GAAT-G-TATA------TAAACAGGCT--ACCA--TTTGATAA--C-AACACAA------AAGAA--AATAGATtgtgctgcatgtattcagaacgtaatctctctctctctttcgttcacaatattgcaaaacgttactcctgttttactataaatacgtgttatatttaattgtaattgtgtataattttttatgtgagaatgtatataaacaggctaccatttgataacaacacaaaagaaaatagatgaagtgttacgaatt
gi|10 : aggcttaacactaatactaaaatggagtaactcatcttaatatcatgtcttatatgaacaaaacctttgcatcccaattttaatgtaatatgtactcgatatttagtttatttattattaaattctatatagaactatgcccacaagttcttacacagatgtcatatagtatatactgcaatgtgcaagtaaaatcatcattttagataaacgttgcaacatccctttacaggaatgtgcttatatctaacaatgtttgacaaaataaaatgttttttatcattaaattattacttaacatccatgacaagaacacaaaacaataataaataatacatttgaaatatgtcatttttttgcataatgattcaaccttgaatgtaaatacaaaatgttacatcagactttgataaccttcttaaacatccaaactaatataaacacgtagaacaaagcttagcccaaagaaaatcgaaacgcatattaaaaaatctctaaagtctctaaacattttgaaataacaaggttaaaactgtacagccatatttattaatttacgattgtgctgcatgtattcagaacgtaatctctctctctctttcgTC----TTAGCC-CAAGCCAGATCCAAACTGGAAACGCATAATAGGAAACGGCACTCAACACTCAATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCGACA--TC-AATA-TAGT-ATTGA--TCTAA-TAATTGA-TAA-TGAACA-TGAT-TAATCAgaagtgttacgaatt
gi|10 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTGTATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACCGGCT--GCCA--TTTGGCAA--CTAAAAAAA------ATAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctccctccctccctctttctcacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttgtataataacttgataatgtgaaaatgaaaaaataaaccggctgccatttggcaactaaaaaaaataata
gi|11 : tcttagcccaagccagatccaaactggaaacgcataataggaaacggcactcaacactcaataaaatttgaataatcaaatatagcaaccttatataatcgacatcaatatagtattgatctaataattgataatgaacatgattaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctccctccctccctctttctcaA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCAta
gi|11 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTCAAAAAA------AAAAA--AAAAAAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttatataataacttgataatgtgaaaatgaaaaaataaacgggctgccatttggtaactcaaaaaaaaaaaaaaaaa
gi|12 : aatcttagcccaagcgagatccaaactggaaacgcataatagaaaatggcactcaataaaatttgaataatccaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaTGTAAAATGCAAAGCGATATACCATGC-TTTGATAACTATCTTAGATATTTAAAA-GAATGTAAAAATAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGGAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|12 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTCATATA----AT---AAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgtcatataataa
gi|13 : tgtaaaatgcaaagcgatataccatgctttgataactatcttagatatttaaaagaatgtaaaaatatagaacaaatcttagcccaagcgagatccaaactggaaacgcataataggaaatggcactcaataaaatttgaataatcaaatatagcaaccttatataatcaacatcaatatgtattgatcttataatgaacatgattaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacaATAA--ATTTGCTTATTATCCTAG-AAAATAT--GTCATTTTTAAATGTAAAATGCAATCCAATACACCAAGT-TTTGACAACTTTATGAGATATTTAAGA-GAATGTAAAAAC-----AGAACAA--ATC----TTAACC-CAGTCGAAATCCAAACTAGAAACGCAAAACAG-AAATGGCGTTCA-------CTGAAAT-TT-TA--AATAATTAGGAATAGCAACCTT----AA-----GTACTTAACA--TC-AATA-
gi|14 : aacaaatcatttattatcacaaaatggtattaatgtagcattaaaatttaaaaatatatattattgggcatccatgacaacaaacaaaacaaaaaaataattAA--ATC----TCAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCTAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|14 : CATTTTCACAACACTGC-TAATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTATACA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTCAAAAAA------AACAA--AAAAAAtcatcatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacacacacattttcacaacactgctaatagtactcatgtttataaatgtgtattgttatacaataacttgataatgtgaaaatgaaaaaataaacgggctgccatttggtaactcaaaaaaaacaaaaaaaac
gi|15 : aaatctcagcccaagcgagatccaaactggaaacgcataatagaaaatggcactcaataaaatttgaataatctaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcatcatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacacacaTCATTTTCACTACACTATATCATAT---CACT-CCTGTTT----A-AAATGCAT---ATTACTGTGTACAATGT---AATT-TT-GTATAT-------G-GAT------AAAT----AAA---A-ATAAACGGGCT--AATA--CTAGGTAATTCCAAAAACA------Ac
gi|16 : cagttagaaatatcaaccttcagttaaataaacaacacgaatatatatgtatttaaaattatacattaattaatcagatccctctgtctctgtctcAA--ATC----TTAGCC-CAAGCGAGATCCAAACTAGAAATGCATAATAGAAAATGGCACTCA-------ATAAAA--TA-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TT-AATA-T-GT-ATTGA--ACT---T-----A-TAA-TGAACA-TGAT-TCATCAtatattcagttgaatttataatacaacctggttaatgattagaaccaattttatagtcatttcgttatt
gi|16 : CATTTTCACAACACTGC-TTATAG---TACT-CATATTT----ATAAATGCGT---ATTATTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACCGGCT--GCCA--TTTCGCAA--CTAAAAAAACCCCCCAAAAA--tctctctctctcacacacattttcacaacactgcttatagtactcatatttataaatgcgtattattatataataacttgataatgtgaaaatgaaaaaataaaccggctgccatttcgcaactaaaaaaaccccccaaaaaacccaa
gi|17 : aaatcttagcccaagcgagatccaaactagaaatgcataatagaaaatggcactcaataaaatatgaataatccaatatagcaaccttatataattaacattaatatgtattgaacttataatgaacatgattcatcatctctctctctcacaca-------ATAAAA--TT-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCAcccaa
gi|17 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-GAAAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTCAAAAAA------ACAAA--CAAtcatcatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttatataataacttgataatgtgaaaatgaaaaaaataaacgggctgccatttggtaactcaaaaaaacaaacaa
gi|18 : ataaaatttgaataatccaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcatcatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacaGCAACCAT----AT-----ATAATCAACA--TC-AGTA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|18 : TTTTCACTACACTGC-TTATAG---TACT-CATGTTT----TTAAATGTAT---CTTGTTATGTA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G--AAA---A-ATAAACGGACT--GCCA--TTTGGCAA--CTAAAAAAA------AAATACTAAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttcactacactgcttatagtactcatgtttttaaatgtatcttgttatgtaataacttgataatgtgaaaatgaaaaataaacggactgccatttggcaactaaaaaaaaaatactaaaaa
gi|19 : gcaaccatatataatcaacatcagtatgtattgatcttataatgaacatgattaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAA--TT-TG--AAT---CAAATTTAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TCATCA
gi|19 : TTTTCACAACACTGT-TTATAG---TGCT-CATGTTT----AAAAATGTGT---ATTGTTATATA----AT---AAC--TG-ATA-AT-------GGGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTGGGCAA--CTCAACAAC------AACAA--AAAtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacactttttcacaacactgtttatagtgctcatgtttaaaaatgtgtattgttatataataactgataatgggaaaatgaaaaaataaacgggctgccattgggcaactcaacaacaacaaaaa
gi|2 : aatttgaatcaaatttagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattcatcatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacactATAATGACTTTTTCATTTTT-TAGCGAAATAT--TTCATTTTTATATATAAAATGCAAAGCGATACATCCAGC-TTTTGCAACTATCTTTGATATTTAAAATGAATGTAAAA-CAT---A-AACAA--ATC----TTAGCC-GAAGCGAGATTAAAACTAGAAACGCATAATAGAAAATGGCGATCT-------ATAAAA--TT-TG--AATATAAAAAAATATCAACCTT----AG-----ATAATCCACA--TC-AA
gi|21 : caaaaatatatatgacacatacatttcgaaaacaactaacaatgttactacaattgtaataaagctcaacaaaaatggaatgactcctatgacaatctgagctggaaaaaaatatttatatcaccgataacatgtacatgttcattcgagattgagttatttcaaaagaagtatttatacagaattatacccacaaataagttaatttaagcatgtaaaaacagtacaacattttttggactgtgctcatacaaaacatttctagacacaaacaaatgatttcttatcacaaaacggtatatatgtagcatttaattttaaaaatatatcattgggcaaccatgacgacaacacaaagcataaaacaTCATTTTCACTACACTAAATCGTAG---TACT-T---TTT----TTAAAGGCAG---AATATTATGTACAATGT---ACTT-TG-ATATAT-------GTGA-------ACATTG-AAAA------TAAACGAGCT--ACCA--CTTGGTAA--CTAAAACAA------atagt
gi|22 : ttcactttctctcT--TTCATTTTTAAATGTAAAATACAAAGCGATACACCCAGC-TTTGACAACAATCTTAGATATTTAAGA-GAATGTAAAAACAT---AGAACAA--ATC----TCAACC-CAAGCAAAAT-TAAACTAGAAACGCATTATAAAAAA---AGTTCT-------ATAAAA--TTCTT--AATAGTTAGAAATAGCAACCTT----AA-----AATATTAAC---T---ATA-T-GT-ATGAA--T-T---T-----A-AAATTGTACA-Tttgtacttatgtataaatctcttcaaatagtttccatttatcatgtttgtattatatgtattatctcttcatatatataaggaaatatatacatttt
gi|23 : atAGCATTTGACAATTATCTTAAATATTTTAAA-CAATATAAAATCAT---TGAACAA--ATC----TAAGCC-CAAGCAAAATTTA-----------CAT------------CTCTGA-------ATA------T-TG--AG-----AAAAA-AACAACCTTAAAGAT-----ATTATCAACA--GC-AACA-T-GT-ATTTA--TTT---A-----A-TAG-TGCACA-TAAT-TAAtagt
gi|25 : gctcatatacaacatttctggacaaaatgattttttctggacaaaatgatttttgtATCTTTAATAGCGAAAA-TAATGCAAAGACATTAAACAACAA--AGC----CTGTCC-AAAGCGATATCGAAACTTGTCTTGCATAATAAGAAATGATTTCCA-------AT-AAA--TG-TGTTAACATTTAGAAA---CAATTTT----CTTAAAAATAAATAATATTTC-AATA-T-TT-ATGAA--T-T---T-----A-CGA-T
gi|26 : taC-CTGTAT---TACTGCAT---T----ATACATG--T---ACTAT-GTACA----ATGT-AACT-TG-GTATAT-------GTGA-------AAAT-G-AAAA------TAAATGGGCT--ATCA--TTCGATAA--CTAAAAATA------AATAA--AAtgcattgcaatgt
gi|27 : ctataaatcatattacATGA--CTTTT-TCATTTTT-TAGCGAAATAT--TTCATTTTTATATATAAAATGCAAAGCGATACATCCAGC-TTTTGCAACTATCTTTGATATTTAAAATGAATGT-AAAACAT---A-AACA
gi|29 : taCACTGC-TTATAG---TACT-CATGTTT----TTAAATGTAT---ATT-TTATGTA----AT---AATT-TG-ATA-AT-------GTGA-------ACAT-G-AAAT---A--TAAACGGGCT--GCCA--TTTGGCAA--CTCAAAACA------AAAAA--AAAAAA
gi|3 : ATAC--ATTTTGTTATTTTCCTAGCAAAAT-T--TTCATTTTTAAATGTAAAATACAAAGCGATACACCCAGC-T
gi|31 : aatatactttgaatgatgacatacatatcacagaacaaatactgaactcgtggaaagaaaaatttaaacatgaaaaattaaacggcaacgacaaaacatttttcattgatagcgttttaaagatactaaaaccaaatactaaaacttaaaccaaatacaatttttttttcgaaaataactaccaatgttacaaataaagctcaacaaaaatggaatgactcttctttatatcaccgattacatgtactatttattcgatataagtattcatacaaaattatacccacaaataagttcttacacaaatgccatttagtaaattcaagttaatgttaattctgcactatgcattttgggggactgtgctcctatacaacatttttagacaaaaacaaacgatttcttatcacaaaacggtgttaatgtagcatttcattttaaaaatatatcattgggcatccatgacgacatcataaaacaaaacacaataTGTAAAATGCAAAGAGCTACACCAAGC-TTTGACAACTATTTTAGATATTTAAAA-GAATGTAAAAATAT---AAAACAA--ATC----TTAGCT-CAAGCAAGATCCAAACTGGAAACGC
gi|32 : C----TTAGCC-CAAGCGAAATCCGAACT-AAAACACAT
gi|32 : AAATAGCAACCTT----AA-----GTAATCAACA--TC-AATA-T-AT-TTTGA--TCT---A-----ATTAG-TGTACATTAAT-TAATCtctaaatagcaaccttaagtaatcaacatcaatatattttgatctaattagtgtacattaattaatc
gi|35 : cttagcccaagcgaaatccgaactaaaacacattctAATGCAC---AGTGTTATGTA-----C---GATT-TGTATA--T-------GT-A-------AAAT-T-TGAA---A-ATAAACAGGAT--ACCA--CTAAGTAA--CT
gi|37 : tt-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAGA------AAAAA--AAAAAA
gi|4 : atgaaA--ATTTTGTTGTTTTCCTAGAAAAATGA--TTTATTTTTAAATGTAAAATGCAAAACGATACACCAAGC-TTCAACAACTATCTTAGAAATTTAAGA-GAATATAAAAACAT---AAAAGAA--AAC----TTAACC-CAAGCAAAAT-------------GCATAATAAAAAATGGCATTCA-------ATAAAA--TTCTG--AATATTTAGAAATAGCAACCTT----A------ATAATCAACA--TC-AATA-T-GT-ATAGA--TCT---A-----A-TAT-TGTACATTAAT-TAATCA
gi|40 : aactgtaatatttatacagaattatacccacaagttcttacacaaatgccatatagtaaattcaagttttggtcaattctataatatgcatgtaatacaatacaacattttctttggaactgtgctcatctagacaaaaacaaacagtttttttttttcacaaaacagtattggtgaagcatttaatttcaaaaatatatcattgggtatccatgacaacacaaaacaaagcactAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAAA------AAAAgatctctctcgctccctctgtctctctctctcatttttgctacaataattcatattattcccgttttaaa
gi|5 : tATAA--ATTTTGTTATTCTTTTAGCGACATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATATACCATGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAATAT---AGAACAA--ATC----TTAGCC-CAAGCCAGATCCAAACTGGAAACGCATAATAGGAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCAACA--TC-AGCA-T-GT-ATTGA--TCT---T-----A-AAA-TGAACA-TTAT-TAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTGTATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGCAA--CTCAAAAAN------NNNNN--NNNNAAT
gi|6 : A--ACTTTG-CATTTG---AG-GAAATATATTTCATTATAAAATGTATAGTGCAACCCAATAAACCTGAC-TTTGACATCTGTCTGATATATCTAATA-TATTACTAACGCAT---AGAACAATTATTGAAGTTAGCCATAGGAGAGATCGAAACTAGGATCACATAAT-GAAAACGGCTTTCA-------ATAATC--TC-TA--AACATTTAGAGACAGCATCTTT----A------AAAAACAACA--CT-AAGA-C-GTAATTAAATTCTATAT-----A-TAT-TGATCA-TTATCTAAg
gi|7 : cacatataatttcatatgagtttccatcaattctgcgatatatacatgttgcaggggtgtggaggtgctcatatcaaacaattatacacaaatcaaaatgatgtgtttatcataagaccgtatcgctgtaccatttaaattgatggcatgatgacaacgcaaataaagtacaattacgTCATTTCTATTACATTACACCATGT---TACT-CCTGTTTTAGTATAGATGCATTATACTGT-GTACA----AT--------TG--TA--T-------GCGT-------ATAT-G-TAAA---A--TG---GGGCTTGGTAAAACTTGGTAA--CTAACAAAA------AAAAC--AAAAA
gi|9 : gagaacattagcaacaaaaacataaaaaaaaatctaaactagaaatgcataatgaatttgcttttaataattcattaatcatttagaaaaagcaacggttacctaaaaaacaaaaacaatatttatagatatacatgtaatattgaacataattaattataccctatccacctttctgtctatctgtaggtggctctctctctatttctc--ATC----TTAGCC-GAAGCGAGATTAAAACTAGAAACGCATAATAGAAAATGGCGATCT-------ATAAAA--TT-TG--AATATAAAAAAATATCAACCTT----AG-----ATAATCCACA--TCAAATAGT-GT-Actaagctaaacgtcatgcaatccatttaagatccaaactaagctgtatttttattat
gi|9 : ATCATTTTCACTACAATGAGTTATAT---TACT-CATGTTT-----TAAATGTAA---ATTACTATATA----AT------T-TT-ATA-AT-------GTAATTTGTTTAAGT-G-AAAATGAATATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAGAA------AATAA--GAAcgtaatataagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatatatatatatttttcattcattttcactctctctatcattttcactacaatgagttatattactcatgttttaaatgtaaattactatataattttataatgtaatttgtttaagtgaaaatgaatataaacgggctgccatttggtaactaaaagaaaataagaa
blockSeqs : TG C CC C AT A A T TAA G TT GAAG A G A ACACTCA T C TT A T AAAG TTAAAA TT A G A A AT AATAATTG T T T C A . G TAGT T TAT CAAT GT . T T . TTTGTTT T A TGAATA TG AA TT CCCCCC CT
blockSeqs : . T CC C . A . T . G . . . G A . . C . A T . T . . . . . . ATAT . . T . A . . . T . CAAT . . . T . T . . AA . . . . .
blockSeqs : . G CC C . C . . . G . . . G A . . . . A T . T . . . . . . T . . . . A . . . T . . . . . T . . . . AA . . . . .
blockSeqs : . G TT A . C . . . G . . . A G . . . . A A . T . . . . . . T . . . . G . . . T . . . . . . . . . . AA . . . . .
blockSeqs : . G T C . C . . . C . . . G A . . . . A T . A . . . . . . T . . . . . . . . C . . . . . . . . . . AA . . . . .
blockSeqs : . G T . . C . . . A . . . A A . . . . A T . T . . . . . . T . . . . . . . . C . . . . . . . . . . AA . . . . .
blockSeqs : . . . . A . . . A . . . A G . . . . A T . T . . . . . . T . . . . . . . . T . . . . . . . . . . AA . . . . .
blockSeqs : . A . . . G . . . A G . . . . T T . T . . . . . . T . . . . . . . . T . . . . . . . . . . AA . . . . .
blockSeqs : A . . . G . . . T T . . . . G A . T . . . . . . T . . . . . . . . T . . . . . . . . . . AA . . . . .
blockSeqs : T . . . . . . . G T . . . . T A . T . . . . . . T . . . . . . . . C . . . . . . . . . . AA . . . . .
blockSeqs : . . . . . . . G A . . . . T A . G . . . . . . A . . . . . . . . T . . . . . . . . . . AA . . . . .
blockSeqs : . . . A A . . . . A A . A . . . . . . T . . . . . . . . C . . . . . . . . . . AA . . . . .
blockSeqs : . . . A T . . . . T A . T . . . . . . A . . . . . . . T . . . . . . . . . . AA . . . .
blockSeqs : . . . . G . . . . T A . A . . . . . . A . . . . . . C . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . T . T . . . . . . T . . . . . . T . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . G . G . . . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : ** T***** *** **** *** ******* AA****
originalCons : ATAA--ATTTTGTCATTTTCCTAGCGAAATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATACACCNAGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAACAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCGCTCA-------ATAAAA--TT-TG--AATANTCAAANATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGCGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAAA------AAAAA--AAAAAAT
finalCons : ATAA--ATTTTGTCATTTTCCTAGCGAAATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATACACCNAGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAACAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCGCTCA-------ATAAAA--TT-TG--AATANTCAAANATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGCGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAAAA----TAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAAA------AAAAA--AAAAAAT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATAACTACCCAAGTTACAAATAAACAAAGCTCAGCCCAAATGAAATGACTTCTATGAAAATCCGATCCGGAAAAATAAAATATTTGAGTGTATTTCAATAAAATAATTGTATTGACTCATTATCACAGATAAGTTCTTACATAAACTCAAGTATATGCCAAATCTGCAATATGAATGTAGAAACAAATCAAGATCTACTTTTTTAATCATTTCAGGACAAAAACAAATATTTTATCATTTAATTCTAAAAATGAATCACTGAGCATCCATGACGACGACACAAAACAAAAAATCAATTGTTTTTGTAATTTTCCCAGAAAAAAAGTCATTTTAAATGTAAACTATGTAAATACATATTTGAAATAAATCTTAGCCCAATCAAAATATAA
Unaligned ( gi|20 ): GGAAGTATCAAACATCGACGATGATATTATATGGAATAATCCATTCATAAAAAGATAAACATATGGCTAGATAAAGGAATCAAATATATTCAACAACTTAATTACAGAAACGATAGCGTTGAATATTCTTATATGATAAAACATTTTAGAAGACACAATTCATGGAAAGAAAAACTTAAACAACACAAAATGAACGCAACAAACCGTTTCGCATGGATAGGAATTGAACTGTGTTGA
Unaligned ( gi|24 ): ACCAATAAAACTATATATGAGACATACATTTCGAAAACAACTACAAATGTTACAAATAAAGCTCAACAAATATGCAATGGCTCCTTAAAAAACATATTTATATCACCGATTACATGTTCTATTTATTCGAGATTGACGTTATTTCAATATAATTATTTATACAGAATTATACCCACATATAATTTATATATTATATGATATAATAAA
Unaligned ( gi|28 ): TACAACATTTCTGTGACTGCGCTCATATACAACATTTCCGGACAAAAAACAAATGATTTCTTATCACAAAACGGTAATAGTGTGAATTAAATAACATTGAAGACGAATACCAT
Unaligned ( gi|30 ): ACCAAATAACATTTATATTTATATAAACACATATTTCGAAAAATTTCCCTTTTCTCTAATAAAGTTCAACAAAACTAGAATGACTTATATGGAAATCTGAACCAAAAAA
Unaligned ( gi|33 ): TTTTCACTACACTAAATCATGTTACTCCTGTTTAAAGTGCATACTTATGTGTACAATGTAACGTTGTATATATAAAAA
Unaligned ( gi|34 ): CAAATTAAATTATATATGAGATATACATTTCGAAAACAACTACAAATGTTACAAAAATGGAATGGCTCTTA
Unaligned ( gi|36 ): CATGTAGAAACGATACAACATTTCTGTGACTGTGACTGAACTCATGTACAACATTTC
Unaligned ( gi|38 ): TGTAAATTTAATGTCAATAAAATCTCTATATCAATGTCTGTAATATATGTATT
Unaligned ( gi|39 ): ATTTTTACTACATTAAATCATATAACTCCTGTTTTAAGTGCATAATT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1111 1111 1111111
lowQualScore : 77 2 33 5 0 66 1 3 6 555 3 33 5555 2 00 4 4 8888888 55 4 33 2 0 1 4444 000000 22 2 2 2 2 33 0 999999999 2 2 5 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 444 2 0000 2 444 0 0000 777 2 5 7 8888888 0000000 2 2 555555 33 33 33 666666 44
lowQualScore : .. . .. . . .. . . . ... . .. .... . .. . . ....... .. . .. . . . .... ...... .. . . . . .. . ......... . . . . .................................................................................................... . . ... . .... . ... . .... ... . . . ....... ....... . . ...... .. .. .. ...... ..
lowQualScore : 99 5 99 6 9 11 0 3 7 888 1 77 0000 4 99 5 1 1111111 66 7 22 6 1 0 5555 666666 99 1 2 4 4 44 4 999999999 5 5 7 1 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 0 444 5 6666 4 111 5 0000 444 5 0 5 1111111 6666666 5 4 777777 11 11 11 888888 22
consensus : ATAA--ATTTTGTCATTTTCCTAGCGAAATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATACACCNAGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAACAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCGCTCA-------ATAAAA--TT-TG--AATANTCAAANATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGCGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAAA------AAAAA--AAAAAAT
Reference ( family-958 ) : ATAA--ATTTTGTCATTTTCCTAGCGAAATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATACACCNAGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAACAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCGCTCA-------ATAAAA--TT-TG--AATANTCAAANATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGCGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAAA------AAAAA--AAAAAAT
gi|1 : TGTCATTTTTTT-GCATAATGA--TTCAACCTTGAATGTAAA-TACAAAATGTTACATCAGAC-TTTGATAACCTTCTTAAACATCCAAAC-TAATATAAACACGT---AGAACAA--AGC----TTAGCC-CAA---AGA---AAA-TCGAAACGCATATTAAAAAAT----CTC---------TAAAGTCTC-TA--AACATTTTGAAATAACAAGGTT----A------AAACTGTACA--GC-CATA-T-TT-ATTAA--T-T---T-----A-CGA-T
gi|1 : aggcttaacactaatactaaaatggagtaactcatcttaatatcatgtcttatatgaacaaaacctttgcatcccaattttaatgtaatatgtactcgatatttagtttatttattattaaattctatatagaactatgcccacaagttcttacacagatgtcatatagtatatactgcaatgtgcaagtaaaatcatcattttagataaacgttgcaacatccctttacaggaatgtgcttatatctaacaatgtttgacaaaataaaatgttttttatcattaaattattacttaacatccatgacaagaacacaaaacaataataaataatacatttgaaataTTCACAATATTGC---AAAACGTTACT-CCTGTTTTACTATAAATACGT---GTTAT-ATTTA----ATTGTAATTGTGTATA-ATTTTTTATGTGA-------GAAT-G-TATA------TAAACAGGCT--ACCA--TTTGATAA--C-AACACAA------AAGAA--AATAGATtgtgctgcatgtattcagaacgtaatctctctctctctttcgttcacaatattgcaaaacgttactcctgttttactataaatacgtgttatatttaattgtaattgtgtataattttttatgtgagaatgtatataaacaggctaccatttgataacaacacaaaagaaaatagatgaagtgttacgaatt
gi|10 : aggcttaacactaatactaaaatggagtaactcatcttaatatcatgtcttatatgaacaaaacctttgcatcccaattttaatgtaatatgtactcgatatttagtttatttattattaaattctatatagaactatgcccacaagttcttacacagatgtcatatagtatatactgcaatgtgcaagtaaaatcatcattttagataaacgttgcaacatccctttacaggaatgtgcttatatctaacaatgtttgacaaaataaaatgttttttatcattaaattattacttaacatccatgacaagaacacaaaacaataataaataatacatttgaaatatgtcatttttttgcataatgattcaaccttgaatgtaaatacaaaatgttacatcagactttgataaccttcttaaacatccaaactaatataaacacgtagaacaaagcttagcccaaagaaaatcgaaacgcatattaaaaaatctctaaagtctctaaacattttgaaataacaaggttaaaactgtacagccatatttattaatttacgattgtgctgcatgtattcagaacgtaatctctctctctctttcgTC----TTAGCC-CAAGCCAGATCCAAACTGGAAACGCATAATAGGAAACGGCACTCAACACTCAATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCGACA--TC-AATA-TAGT-ATTGA--TCTAA-TAATTGA-TAA-TGAACA-TGAT-TAATCAgaagtgttacgaatt
gi|10 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTGTATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACCGGCT--GCCA--TTTGGCAA--CTAAAAAAA------ATAAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctccctccctccctctttctcacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttgtataataacttgataatgtgaaaatgaaaaaataaaccggctgccatttggcaactaaaaaaaataata
gi|11 : tcttagcccaagccagatccaaactggaaacgcataataggaaacggcactcaacactcaataaaatttgaataatcaaatatagcaaccttatataatcgacatcaatatagtattgatctaataattgataatgaacatgattaatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattctccctccctccctctttctcaA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCAta
gi|11 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTCAAAAAA------AAAAA--AAAAAAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttatataataacttgataatgtgaaaatgaaaaaataaacgggctgccatttggtaactcaaaaaaaaaaaaaaaaa
gi|12 : aatcttagcccaagcgagatccaaactggaaacgcataatagaaaatggcactcaataaaatttgaataatccaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacaTGTAAAATGCAAAGCGATATACCATGC-TTTGATAACTATCTTAGATATTTAAAA-GAATGTAAAAATAT---AGAACAA--ATC----TTAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGGAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|12 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTCATATA----AT---AAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgtcatataataa
gi|13 : tgtaaaatgcaaagcgatataccatgctttgataactatcttagatatttaaaagaatgtaaaaatatagaacaaatcttagcccaagcgagatccaaactggaaacgcataataggaaatggcactcaataaaatttgaataatcaaatatagcaaccttatataatcaacatcaatatgtattgatcttataatgaacatgattaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacacaATAA--ATTTGCTTATTATCCTAG-AAAATAT--GTCATTTTTAAATGTAAAATGCAATCCAATACACCAAGT-TTTGACAACTTTATGAGATATTTAAGA-GAATGTAAAAAC-----AGAACAA--ATC----TTAACC-CAGTCGAAATCCAAACTAGAAACGCAAAACAG-AAATGGCGTTCA-------CTGAAAT-TT-TA--AATAATTAGGAATAGCAACCTT----AA-----GTACTTAACA--TC-AATA-
gi|14 : aacaaatcatttattatcacaaaatggtattaatgtagcattaaaatttaaaaatatatattattgggcatccatgacaacaaacaaaacaaaaaaataattAA--ATC----TCAGCC-CAAGCGAGATCCAAACTGGAAACGCATAATAGAAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCTAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|14 : CATTTTCACAACACTGC-TAATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTATACA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTCAAAAAA------AACAA--AAAAAAtcatcatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacacacacattttcacaacactgctaatagtactcatgtttataaatgtgtattgttatacaataacttgataatgtgaaaatgaaaaaataaacgggctgccatttggtaactcaaaaaaaacaaaaaaaac
gi|15 : aaatctcagcccaagcgagatccaaactggaaacgcataatagaaaatggcactcaataaaatttgaataatctaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcatcatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacacacaTCATTTTCACTACACTATATCATAT---CACT-CCTGTTT----A-AAATGCAT---ATTACTGTGTACAATGT---AATT-TT-GTATAT-------G-GAT------AAAT----AAA---A-ATAAACGGGCT--AATA--CTAGGTAATTCCAAAAACA------Ac
gi|16 : cagttagaaatatcaaccttcagttaaataaacaacacgaatatatatgtatttaaaattatacattaattaatcagatccctctgtctctgtctcAA--ATC----TTAGCC-CAAGCGAGATCCAAACTAGAAATGCATAATAGAAAATGGCACTCA-------ATAAAA--TA-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TT-AATA-T-GT-ATTGA--ACT---T-----A-TAA-TGAACA-TGAT-TCATCAtatattcagttgaatttataatacaacctggttaatgattagaaccaattttatagtcatttcgttatt
gi|16 : CATTTTCACAACACTGC-TTATAG---TACT-CATATTT----ATAAATGCGT---ATTATTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACCGGCT--GCCA--TTTCGCAA--CTAAAAAAACCCCCCAAAAA--tctctctctctcacacacattttcacaacactgcttatagtactcatatttataaatgcgtattattatataataacttgataatgtgaaaatgaaaaaataaaccggctgccatttcgcaactaaaaaaaccccccaaaaaacccaa
gi|17 : aaatcttagcccaagcgagatccaaactagaaatgcataatagaaaatggcactcaataaaatatgaataatccaatatagcaaccttatataattaacattaatatgtattgaacttataatgaacatgattcatcatctctctctctcacaca-------ATAAAA--TT-TG--AATAATCCAATATAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCAcccaa
gi|17 : CATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTATATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-GAAAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTCAAAAAA------ACAAA--CAAtcatcatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacacattttcacaacactgcttatagtactcatgtttataaatgtgtattgttatataataacttgataatgtgaaaatgaaaaaaataaacgggctgccatttggtaactcaaaaaaacaaacaa
gi|18 : ataaaatttgaataatccaatatagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattaatcatcatcatcatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacacacaGCAACCAT----AT-----ATAATCAACA--TC-AGTA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TAATCA
gi|18 : TTTTCACTACACTGC-TTATAG---TACT-CATGTTT----TTAAATGTAT---CTTGTTATGTA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G--AAA---A-ATAAACGGACT--GCCA--TTTGGCAA--CTAAAAAAA------AAATACTAAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttcactacactgcttatagtactcatgtttttaaatgtatcttgttatgtaataacttgataatgtgaaaatgaaaaataaacggactgccatttggcaactaaaaaaaaaatactaaaaa
gi|19 : gcaaccatatataatcaacatcagtatgtattgatcttataatgaacatgattaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAA--TT-TG--AAT---CAAATTTAGCAACCTT----AT-----ATAATTAACA--TC-AATA-T-GT-ATTGA--TCT---T-----A-TAA-TGAACA-TGAT-TCATCA
gi|19 : TTTTCACAACACTGT-TTATAG---TGCT-CATGTTT----AAAAATGTGT---ATTGTTATATA----AT---AAC--TG-ATA-AT-------GGGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTGGGCAA--CTCAACAAC------AACAA--AAAtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacactttttcacaacactgtttatagtgctcatgtttaaaaatgtgtattgttatataataactgataatgggaaaatgaaaaaataaacgggctgccattgggcaactcaacaacaacaaaaa
gi|2 : aatttgaatcaaatttagcaaccttatataattaacatcaatatgtattgatcttataatgaacatgattcatcatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacactATAATGACTTTTTCATTTTT-TAGCGAAATAT--TTCATTTTTATATATAAAATGCAAAGCGATACATCCAGC-TTTTGCAACTATCTTTGATATTTAAAATGAATGTAAAA-CAT---A-AACAA--ATC----TTAGCC-GAAGCGAGATTAAAACTAGAAACGCATAATAGAAAATGGCGATCT-------ATAAAA--TT-TG--AATATAAAAAAATATCAACCTT----AG-----ATAATCCACA--TC-AA
gi|21 : caaaaatatatatgacacatacatttcgaaaacaactaacaatgttactacaattgtaataaagctcaacaaaaatggaatgactcctatgacaatctgagctggaaaaaaatatttatatcaccgataacatgtacatgttcattcgagattgagttatttcaaaagaagtatttatacagaattatacccacaaataagttaatttaagcatgtaaaaacagtacaacattttttggactgtgctcatacaaaacatttctagacacaaacaaatgatttcttatcacaaaacggtatatatgtagcatttaattttaaaaatatatcattgggcaaccatgacgacaacacaaagcataaaacaTCATTTTCACTACACTAAATCGTAG---TACT-T---TTT----TTAAAGGCAG---AATATTATGTACAATGT---ACTT-TG-ATATAT-------GTGA-------ACATTG-AAAA------TAAACGAGCT--ACCA--CTTGGTAA--CTAAAACAA------atagt
gi|22 : ttcactttctctcT--TTCATTTTTAAATGTAAAATACAAAGCGATACACCCAGC-TTTGACAACAATCTTAGATATTTAAGA-GAATGTAAAAACAT---AGAACAA--ATC----TCAACC-CAAGCAAAAT-TAAACTAGAAACGCATTATAAAAAA---AGTTCT-------ATAAAA--TTCTT--AATAGTTAGAAATAGCAACCTT----AA-----AATATTAAC---T---ATA-T-GT-ATGAA--T-T---T-----A-AAATTGTACA-Tttgtacttatgtataaatctcttcaaatagtttccatttatcatgtttgtattatatgtattatctcttcatatatataaggaaatatatacatttt
gi|23 : atAGCATTTGACAATTATCTTAAATATTTTAAA-CAATATAAAATCAT---TGAACAA--ATC----TAAGCC-CAAGCAAAATTTA-----------CAT------------CTCTGA-------ATA------T-TG--AG-----AAAAA-AACAACCTTAAAGAT-----ATTATCAACA--GC-AACA-T-GT-ATTTA--TTT---A-----A-TAG-TGCACA-TAAT-TAAtagt
gi|25 : gctcatatacaacatttctggacaaaatgattttttctggacaaaatgatttttgtATCTTTAATAGCGAAAA-TAATGCAAAGACATTAAACAACAA--AGC----CTGTCC-AAAGCGATATCGAAACTTGTCTTGCATAATAAGAAATGATTTCCA-------AT-AAA--TG-TGTTAACATTTAGAAA---CAATTTT----CTTAAAAATAAATAATATTTC-AATA-T-TT-ATGAA--T-T---T-----A-CGA-T
gi|26 : taC-CTGTAT---TACTGCAT---T----ATACATG--T---ACTAT-GTACA----ATGT-AACT-TG-GTATAT-------GTGA-------AAAT-G-AAAA------TAAATGGGCT--ATCA--TTCGATAA--CTAAAAATA------AATAA--AAtgcattgcaatgt
gi|27 : ctataaatcatattacATGA--CTTTT-TCATTTTT-TAGCGAAATAT--TTCATTTTTATATATAAAATGCAAAGCGATACATCCAGC-TTTTGCAACTATCTTTGATATTTAAAATGAATGT-AAAACAT---A-AACA
gi|29 : taCACTGC-TTATAG---TACT-CATGTTT----TTAAATGTAT---ATT-TTATGTA----AT---AATT-TG-ATA-AT-------GTGA-------ACAT-G-AAAT---A--TAAACGGGCT--GCCA--TTTGGCAA--CTCAAAACA------AAAAA--AAAAAA
gi|3 : ATAC--ATTTTGTTATTTTCCTAGCAAAAT-T--TTCATTTTTAAATGTAAAATACAAAGCGATACACCCAGC-T
gi|31 : aatatactttgaatgatgacatacatatcacagaacaaatactgaactcgtggaaagaaaaatttaaacatgaaaaattaaacggcaacgacaaaacatttttcattgatagcgttttaaagatactaaaaccaaatactaaaacttaaaccaaatacaatttttttttcgaaaataactaccaatgttacaaataaagctcaacaaaaatggaatgactcttctttatatcaccgattacatgtactatttattcgatataagtattcatacaaaattatacccacaaataagttcttacacaaatgccatttagtaaattcaagttaatgttaattctgcactatgcattttgggggactgtgctcctatacaacatttttagacaaaaacaaacgatttcttatcacaaaacggtgttaatgtagcatttcattttaaaaatatatcattgggcatccatgacgacatcataaaacaaaacacaataTGTAAAATGCAAAGAGCTACACCAAGC-TTTGACAACTATTTTAGATATTTAAAA-GAATGTAAAAATAT---AAAACAA--ATC----TTAGCT-CAAGCAAGATCCAAACTGGAAACGC
gi|32 : C----TTAGCC-CAAGCGAAATCCGAACT-AAAACACAT
gi|32 : AAATAGCAACCTT----AA-----GTAATCAACA--TC-AATA-T-AT-TTTGA--TCT---A-----ATTAG-TGTACATTAAT-TAATCtctaaatagcaaccttaagtaatcaacatcaatatattttgatctaattagtgtacattaattaatc
gi|35 : cttagcccaagcgaaatccgaactaaaacacattctAATGCAC---AGTGTTATGTA-----C---GATT-TGTATA--T-------GT-A-------AAAT-T-TGAA---A-ATAAACAGGAT--ACCA--CTAAGTAA--CT
gi|37 : tt-AAAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAGA------AAAAA--AAAAAA
gi|4 : atgaaA--ATTTTGTTGTTTTCCTAGAAAAATGA--TTTATTTTTAAATGTAAAATGCAAAACGATACACCAAGC-TTCAACAACTATCTTAGAAATTTAAGA-GAATATAAAAACAT---AAAAGAA--AAC----TTAACC-CAAGCAAAAT-------------GCATAATAAAAAATGGCATTCA-------ATAAAA--TTCTG--AATATTTAGAAATAGCAACCTT----A------ATAATCAACA--TC-AATA-T-GT-ATAGA--TCT---A-----A-TAT-TGTACATTAAT-TAATCA
gi|40 : aactgtaatatttatacagaattatacccacaagttcttacacaaatgccatatagtaaattcaagttttggtcaattctataatatgcatgtaatacaatacaacattttctttggaactgtgctcatctagacaaaaacaaacagtttttttttttcacaaaacagtattggtgaagcatttaatttcaaaaatatatcattgggtatccatgacaacacaaaacaaagcactAA---A-ATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAAAA------AAAAgatctctctcgctccctctgtctctctctctcatttttgctacaataattcatattattcccgttttaaa
gi|5 : tATAA--ATTTTGTTATTCTTTTAGCGACATAT--TTCATTTTTAAATGTAAAATGCAAAGCGATATACCATGC-TTTGACAACTATCTTAGATATTTAAAA-GAATGTAAAAATAT---AGAACAA--ATC----TTAGCC-CAAGCCAGATCCAAACTGGAAACGCATAATAGGAAATGGCACTCA-------ATAAAA--TT-TG--AATAATCAAATATAGCAACCTT----AT-----ATAATCAACA--TC-AGCA-T-GT-ATTGA--TCT---T-----A-AAA-TGAACA-TTAT-TAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTTTCACAACACTGC-TTATAG---TACT-CATGTTT----ATAAATGTGT---ATTGTTGTATA----AT---AACT-TG-ATA-AT-------GTGA-------AAAT-G-AAAA---A-ATAAACGGGCT--GCCA--TTTGGCAA--CTCAAAAAN------NNNNN--NNNNAAT
gi|6 : A--ACTTTG-CATTTG---AG-GAAATATATTTCATTATAAAATGTATAGTGCAACCCAATAAACCTGAC-TTTGACATCTGTCTGATATATCTAATA-TATTACTAACGCAT---AGAACAATTATTGAAGTTAGCCATAGGAGAGATCGAAACTAGGATCACATAAT-GAAAACGGCTTTCA-------ATAATC--TC-TA--AACATTTAGAGACAGCATCTTT----A------AAAAACAACA--CT-AAGA-C-GTAATTAAATTCTATAT-----A-TAT-TGATCA-TTATCTAAg
gi|7 : cacatataatttcatatgagtttccatcaattctgcgatatatacatgttgcaggggtgtggaggtgctcatatcaaacaattatacacaaatcaaaatgatgtgtttatcataagaccgtatcgctgtaccatttaaattgatggcatgatgacaacgcaaataaagtacaattacgTCATTTCTATTACATTACACCATGT---TACT-CCTGTTTTAGTATAGATGCATTATACTGT-GTACA----AT--------TG--TA--T-------GCGT-------ATAT-G-TAAA---A--TG---GGGCTTGGTAAAACTTGGTAA--CTAACAAAA------AAAAC--AAAAA
gi|9 : gagaacattagcaacaaaaacataaaaaaaaatctaaactagaaatgcataatgaatttgcttttaataattcattaatcatttagaaaaagcaacggttacctaaaaaacaaaaacaatatttatagatatacatgtaatattgaacataattaattataccctatccacctttctgtctatctgtaggtggctctctctctatttctc--ATC----TTAGCC-GAAGCGAGATTAAAACTAGAAACGCATAATAGAAAATGGCGATCT-------ATAAAA--TT-TG--AATATAAAAAAATATCAACCTT----AG-----ATAATCCACA--TCAAATAGT-GT-Actaagctaaacgtcatgcaatccatttaagatccaaactaagctgtatttttattat
gi|9 : ATCATTTTCACTACAATGAGTTATAT---TACT-CATGTTT-----TAAATGTAA---ATTACTATATA----AT------T-TT-ATA-AT-------GTAATTTGTTTAAGT-G-AAAATGAATATAAACGGGCT--GCCA--TTTGGTAA--CTAAAAGAA------AATAA--GAAcgtaatataagatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatatatatatatttttcattcattttcactctctctatcattttcactacaatgagttatattactcatgttttaaatgtaaattactatataattttataatgtaatttgtttaagtgaaaatgaatataaacgggctgccatttggtaactaaaagaaaataagaa
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATAACTACCCAAGTTACAAATAAACAAAGCTCAGCCCAAATGAAATGACTTCTATGAAAATCCGATCCGGAAAAATAAAATATTTGAGTGTATTTCAATAAAATAATTGTATTGACTCATTATCACAGATAAGTTCTTACATAAACTCAAGTATATGCCAAATCTGCAATATGAATGTAGAAACAAATCAAGATCTACTTTTTTAATCATTTCAGGACAAAAACAAATATTTTATCATTTAATTCTAAAAATGAATCACTGAGCATCCATGACGACGACACAAAACAAAAAATCAATTGTTTTTGTAATTTTCCCAGAAAAAAAGTCATTTTAAATGTAAACTATGTAAATACATATTTGAAATAAATCTTAGCCCAATCAAAATATAA
Unaligned ( gi|20 ): GGAAGTATCAAACATCGACGATGATATTATATGGAATAATCCATTCATAAAAAGATAAACATATGGCTAGATAAAGGAATCAAATATATTCAACAACTTAATTACAGAAACGATAGCGTTGAATATTCTTATATGATAAAACATTTTAGAAGACACAATTCATGGAAAGAAAAACTTAAACAACACAAAATGAACGCAACAAACCGTTTCGCATGGATAGGAATTGAACTGTGTTGA
Unaligned ( gi|24 ): ACCAATAAAACTATATATGAGACATACATTTCGAAAACAACTACAAATGTTACAAATAAAGCTCAACAAATATGCAATGGCTCCTTAAAAAACATATTTATATCACCGATTACATGTTCTATTTATTCGAGATTGACGTTATTTCAATATAATTATTTATACAGAATTATACCCACATATAATTTATATATTATATGATATAATAAA
Unaligned ( gi|28 ): TACAACATTTCTGTGACTGCGCTCATATACAACATTTCCGGACAAAAAACAAATGATTTCTTATCACAAAACGGTAATAGTGTGAATTAAATAACATTGAAGACGAATACCAT
Unaligned ( gi|30 ): ACCAAATAACATTTATATTTATATAAACACATATTTCGAAAAATTTCCCTTTTCTCTAATAAAGTTCAACAAAACTAGAATGACTTATATGGAAATCTGAACCAAAAAA
Unaligned ( gi|33 ): TTTTCACTACACTAAATCATGTTACTCCTGTTTAAAGTGCATACTTATGTGTACAATGTAACGTTGTATATATAAAAA
Unaligned ( gi|34 ): CAAATTAAATTATATATGAGATATACATTTCGAAAACAACTACAAATGTTACAAAAATGGAATGGCTCTTA
Unaligned ( gi|36 ): CATGTAGAAACGATACAACATTTCTGTGACTGTGACTGAACTCATGTACAACATTTC
Unaligned ( gi|38 ): TGTAAATTTAATGTCAATAAAATCTCTATATCAATGTCTGTAATATATGTATT
Unaligned ( gi|39 ): ATTTTTACTACATTAAATCATATAACTCCTGTTTTAAGTGCATAATT