lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111 333333333333333333333333333 222222 66666666666666666666 1 2 111 1 1 2222222222 2 11 11111 11111111 22222222 1111 3333 3 5555 1 1 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 222222 11 1 222222222 22222222 11 11 1111 111 222 33 33 555555 1 44444444444444444444444444 2222 11 11 1 1111 1 3333333 1 22 5555 555555555 1 555555 11 1111 22 11 11111 111111 111111 11111 1111 333333333333 111111 22222
lowQualScore : 0000 222222222222222222222222222 8 000000 66 44444444444444444444 5 0 66 5 0 6 2 777 3 55 444 3 55 5 7777 5 666 3 0 3 1 77 8888888888 5 888 66 0 1 1 555 2 2 3 66 11 5 5 1 44444 0 77 5 888 3 0 5 5 1 33333333 55 66 00000000 5 99 6 99 6 7777 1 8 2222 1 6 1 1 4 0 5555 5 0 7 777 0 2 2 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 55 222222 33 7 6 3 5 777 333333333 5 6 11111111 6 99999 1 1 99 6 6 11 3 44 7777 444 9 444 55 4 0 4 55 4 4 6 6 777777 2 4 1 5 8 1 2 44444444444444444444444444 33 6666 33 4 44 0 6 4444 7 1 6 9999999 3 1 11 5555 77 000000000 3 333333 1 88 2 5 5 5 5 4444 77 66 99 5 44 2 3 2 1 66666 77 5 6666 999999 999999 3 4 66666 6 0 6 6666 2 444444444444 0 1 22 5 555555 0 8 1 88 77777 1
lowQualScore : .... ........................... . ...... .. .................... . . .. . . . . ... . .. ... . .. . .... . ... . . . . .. .......... . ... .. . . . ... . . . .. .. . . . ..... . .. . ... . . . . . ........ .. .. ........ . .. . .. . .... . . .... . . . . . . .... . . . ... . . . ................................................................................................................................ . .. ...... .. . . . . ... ......... . . ........ . ..... . . .. . . .. . .. .... ... . ... .. . . . .. . . . . ...... . . . . . . . .......................... .. .... .. . .. . . .... . . . ....... . . .. .... .. ......... . ...... . .. . . . . . .... .. .. .. . .. . . . . ..... .. . .... ...... ...... . . ..... . . . .... . ............ . . .. . ...... . . . .. ..... .
lowQualScore : 6666 777777777777777777777777777 1 666666 11 00000000000000000000 0 0 99 0 4 2 2 000 9 00 555 6 00 4 1111 0 444 6 2 4 4 22 8888888888 0 888 00 7 0 0 333 4 0 1 99 99 0 0 4 00000 1 11 0 888 6 1 0 0 5 00000000 11 99 77777777 7 22 7 77 0 0000 0 0 6666 0 0 4 0 6 2 8888 4 8 0 222 8 8 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 55 222222 55 3 8 6 4 888 000000000 0 7 00000000 7 55555 0 0 22 7 7 22 2 22 0000 000 8 222 33 0 7 0 55 0 0 0 0 555555 5 0 0 0 3 0 2 00000000000000000000000000 55 0000 88 0 22 0 0 3333 0 0 7 0000000 3 0 00 0000 33 333333333 3 888888 4 66 7 7 1 7 7 2222 00 88 22 2 88 2 5 5 0 77777 77 2 0000 222222 222222 7 7 77777 7 3 3 2222 5 333333333333 9 7 66 1 000000 7 1 7 88 00000 4
consensus : GAAAATATTCACATTATAAA----TCATT-------------A------C------TCCCATCT------A--AAA-CAGGATGTTTTATCT-TA-AA-CAGGATG-TT--TTATCTATAAAAACAGGATGTTTTCATCGGATCCG---TTTCTAAAGTATTCTGGGAATTTG--AAAA-N-AA-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCA---A-GTATCACGCATCCATGCACGCACCCATGCACGCACAT-GCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATAGAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAA-TTATT---TGATGCATTAATTTTATGTAAACTTAACTA-CTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATATTCTGGGAATTTGAA--AA-AAAAATCAG-ATAAGCTTGGTGACATTGCAATACACATTCAAGTGT---GTAT---CAC---CACCCA-TA-AAAATAAAA----TNAGATA-CAATAT--CG-AGATGTAGTGAGGCCGAA--ATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGCAAAAA-AAACA--CAGGTNTCTGAGGAATTCGNGAGANAANAATGTAAAAATGAAAATGACATAGATCCGATCGTAATCNGTTTTTAAGACATTTGTTTTAGATTTTCCTGAAAACGTA--------AACGTAAAC----GAT--AGTAGATATGTACATTCATGGCC-AGTTATA--CTNTATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATTTG------TTTTTCATTTCCGGCCTAGTTGCGAATCCACTTATTATA--TCAACCAACCGCTTTCTNACTGTTTC-TNA----AT-CGCGTGCAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAA--AANATTTTGTTNGGTCTCATCTGAACAACCCTCCAG-----TAACACT-CGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TTA--TATA--TATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAACGNTATAATAATACTGTA
Reference ( gi|1 ) : GAAAATATTCACATTATAAA----TCATT-------------A------C------TTCCATCT------A--AAA-CAGGATGTTTTATCTATATAA-CAGGATG-TT--T-ATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTG--AAAA-T-AA-A--TCAGATGAGCTTGGTGACATT----GCAATACACATTGA---A-GTATCACGCATCCATGCACGCACCCATGTACGCGCAT-ACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGTTGTTGATAAAAATATGTACGTGACTCAAATCTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTAAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATAAAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTCCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-TCTTTAGAAAGTCGTTTACATCCATGTAAGCATCAGTATGAAATATCAGGTTTAATTTATTTAGTGATTCATTAATTTTATGTAATCTTAACTA-C-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGTGTAGCAAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAATTATTCTGGGAATTTGAA--AAAAAAAATCAG-TTACGCTTGGTGACGTTGCAATATACATTCAAGTGT---GTAT---TGC---CACCCA-TA-AAAATAAAA----TACAATA-CAATAT--CA-AGATGTAGTGAGGCCGAA--ATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAATTTCACTGCAAAAAGAAACACCCAGGTTTCTGAGGAATTCGTGA-AAAAAAATATAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAAACATTTCTTTTAGATATTCTTGAAAATGTA--------AACGTAAA-----GAT--AGTAGATATGTACATTCATGG-C-GGTTATA--CTATGCTGGATAG-GAATAGGAGTGGGGGAAATACCATTTTATAAAGAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATATCCGGTCTAGTTGCAAATATACTTATTATAAACCAACCAACCGCTTTCTGGCTGTTTTGTCT----AT-CGCGTGTAA------TTTTTTATTGCTGTTTCTTTTTATTTCT-AAT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGTTTGTATGATATAGCTTTCAACAGTTATAAA--AAGATTCTGTTTGGTCTCATCTGAACAATCCTCCAG-----TAACACT-TGGTAATTTTCGGT------TATCTCCTATAAAAAAAAGTCGCAAAG-----C-TGATTGGATGCACGGAAGATTACGGACCGTTACGTTA--TATA--TATATGTACTCCGTCTACGACAACAGCGTCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGGAATACTATAGTTATACTGTA
gi|4 : GAAAATATTCACATTATAAA----TCATT-------------A------C------TCCCATCT------A--AAA---------------------A-CAGGATG-TT--TTATCTATAAAAACAGGATGTTTTAATCAAATCAG---TT--------ATTCTTTGAATTTG--AAAA-A-AA-AAATCAGATAAGCTTGGTGACATTCAGTGCAATACACATTCG---A-GTATCGTGCATCCATGCATGCACCTATGCACGCACAT-GCT----------TTACA-ATAATAATAATATATCAGGGAAGTTAAGAATCGTGACAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTTAAAACTGAAAATAACAATTAGTACAATTATGCTTAATGTAAATACT--AGA-AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TGAA-ATAGAAGCTATAGCAT---T------------------------------TGTTCGCATTTTAATATAAAAAAATAA-ATTTCATATCAACAATATGTAAAGATGTGTTTATTTCTAATATG----AGTAAACTCCATGTCCGGCCAGCCCACATATCTAAAC-GA----CTTTAGAAAGTCGTTTATATCCGTGTAAGCATCAGTATGAAATATTAGGTTTGA-TTAT----TGATACATTAATTTTTTTTAAACTTAACTA-CTACAGTCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGAAAATCC
gi|8 : tgGAAAATATTCACATTATGAA----TCATA-------------A------C------TCCCGTCT------A--AAA---------------------A-CAGGATG-TT--TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTG--AAAA-T-AA-A--TCAGATAAGATTGATGACATT----GCAATACACATTCA---G-GTATCACGCATTCATGCAAGCAC------------AT-GCT----------TTACA-ATA---ATAATATATCACAGAAGTTACGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAA-------ATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AATAAA-CATATATCAGGTTGACAACGTAAT-CAAAGTTATG---TATGTTTTGTTATC-TAAA-ATAGAAGCTATAATAT---TTGT-AT--ATAATATGT--------TCTA-TGTTTGTTTTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttctaaaatactctgggaatttgaagaaaaaaaaatcagttaagcttgatgacattgcagtatacattgaagtgtgttttgccacctataaaaacaaaattagatacaaaatcgagatgtagtgaggctgaaataatgatactgtcattcgccatgttaaaaaatgttgttgatgttttaact
gi|17 : tgGAAAATATTCACATTACAAAAAAATCACTCCAATCTGTTAACA------CAAAATGTTTTATCTGAAAAAA--AAA-CGGGATGTTTTATCTTTAAAAACAGGATG-TTCTT-ATCTATAA---CTGGGTGTTTTTATCGGATCCG---TTT--AAAGTATTCTTGGAATTTG--AAAA-A-TA-A--TCAGATGAGATTGGTGACATT----GCAATACACATTCA---A-GTATCTTGCATACATGCAC
gi|19 : GAAAATATTCACATTATCAC----T--TT-------------GGGGAGTC------TCCCATCT------A--AAA-AA-----TTTTA-----A-AA-CAGGAAGATT--T-ATCTATAATA-CAG--TATTT-----------G---TTTCTAAAATATTCTGGGAATTGG--AAAA-A-AA-A--TCAGATAAGCGTGGTGACATT----GCAATACACATTCA---T-GTATCACACATCCATGCATGCA--CATGCCCAT-CATGATTAA--------TTAAG-ATA---ATAATATATCatg
gi|22 : ttgGAAAGTATTCACATTCTAAA----TCATT-------------A------C------TCCAATCT------A--AAA-
gi|3 : gAAAATATTCACATTATAAA----TCATT-------------A------C------TCCCATCT------A--AAAACAGGATGTTTTATCTATATAG-CAAGATG-TT--TTATCTATAAAAACAGGATGTTTTCCTAGAATCCG---TTTCTAAAGTGTTCTTGGAATTTG--AAAA-A-AATA--TCAGATAAGCTTGGTGACATT----GCAATACACATTCA---A-GTATCACGCATCCATGCATGCACCCATGTACGCACAT-GCT----------TTACA-ATA---ATTATATATCACGGAAGTTATGAATCAGGGCAGCGCTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCCAAACTGAAAATAACAATACGTATAACTATGCTAAATGAAAATACG--AG--AA-AAAACATATATCAGGTTGACAACGTAAT-CAAAAGTGTG---TATGTTTTGTTATC-TAAA-ATAGAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATAATAAGATGTGTTTGTTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-GGTCTTTAGAAAGT---TTATATCCATGTAATCATCCGTATGAAATATCAGGTTTAATTTATTTAGTGATGCATTAATTTTATGTAAACTAAACTA-C-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGCGTAGCAAAT-CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTTTAAAATACTCTGGAAATTTGAA--AA-AAAAATCAG-TTAAGCTTGGTGACATTGCAATATACATTCAAGTGT---GTAT---TAC---CACCCA-TG-AAAATGAAA----TAAAATA-CAATAT--CA-AGATGTAGTGAGGCCGAA--ATA-ACGA-TACTGTCATTCGCAATGTA-AAAAATGTTGTTGATGTTCAATT---TTTTTTCACTGCAAA---ATACATCCAGGTTTCTGAGGAATTCGacg
gi|14 : AAAATATTCACATTATAAA----GCATT-------------A------C------TCCCATCT------A--AAAACAGGATGTTTTATCTATATAA-CAGGATG-TT--TTATTTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGTGAATTTG--AAAA-A-AA-A--TCAGAATAGCTTTGTGACATT----GCAATGCACATTCA---A-GTATCACGCATCCATGCACGCACCCATGTATGCACAT-GCT----------TTACA-ATA---ATAATATATCAC-GAAGTTAAGAATCATTGCAGC
gi|11 : AAAATATTTACATTACAAA----TTATC-------------A------C------T-CCATCT------ATAAAA-C-------TTTA-----A-AA-CAGGATGGTT--T-GTTTATAAAA-CAGGATGTTATTATCGGATTCG---TTTCTGAAATATTCTGAGAA----------------A--TCAGATAAGCTTGGTGACCAT----GCAATATACATTCA---A-GTACCATGCATCCATGCACGCATCAATACGCGCACAT-GCTTAAATTATGATTAAAGATA---ATAATATATCATGGAAGTTAAGAATCATTGTGACATTGCATGAATATGTTGTTGATAACAA-AAACACGTTAATCAAA----AAAATAACAATACGTA----TATGCTAAATGTAAATACG--AGAAAA-AAA-CATATATCA--T-----ATGTATT-CAAAATTATG---TAAGTTTTGTTATC-TAAA-ATAAATG--ATA--------TGT-AT--ACAATATG
gi|7 : gaCATC-------------A------C------TCCCATCTGTA---A--AAG-CAGCATGTTTTATCTATAAAA-CTGGATG-TT--TTATTTATAAAAACAGGATGTTTTTATCGGATCCGCTGTTTCTTAAATATTCTGGAAATTTGGAAAAA-T-AA----TCAGATAAGCTTGGTGACATT----GCAATACACATTCA---A-TCATCACGTGTTCATGTACGCATCCATGCACGCACAT-GCT----------TT-----TC---GTGA---ATCA---AAACTGAAAAT------AACA--ATATGTTTATGCT--------AAATACG----------AAA---AAAAACACGAAACCATATAATTAT----AATACATATA--------AA-AAT-TATGTAT--GTTT-----TGTTATACAA---TATGTTCTATG-TTTG-TATT-T-TA-ATACGA-CTTTTTTAT---TTAT-ATTAACAATATGTTAAGATTGTTTATTGTTTATGTTTTAGTA
gi|5 : G---TTTCTAAAATATTCTGGGAATTTG--AAAA-TAAA-A--TCACATAAGCTTGGTGACATT----GCAATacctccacatcctgacagcccacatgtctaagtggagccttcaggaagtcgttgctatccctgtatgcgtctgtacgaaatataagctttaattattgatgcattaattttatataaaattaactactacaatcatgttttgattatccgtccaatataaatagagtaacaga
gi|2 : ctcaaaactgaatataacactacgtatattctaaatgtaaatacgagaaaaacatatattatatgtattaaaattatgtaagtttggttatctaaaataaatgctatctttgcaatatgttctatgtttgtattttaatataaacataaattttatattaacaatatgtaaagatgtgcttattttttatatgaataaattcaacgtctggacagcccatatatctaagcggggccttcagaaagtcgattatatccatgtatgcgtcagtaagaaatattagctttaatatttgatgcattattttatgtaaacttaactattacattcatgttttgattattggttcaatattataaatagtgtaacaattccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna---TTCCTAAA-TACTCTGGGAATTTG--AAAA-T-AA-A--TCAGTTAAGCTTGGTAACATT----GCAATATACATTCA---A-GTGTtttagtatgtaaacaccacccaacataaaataaagttggatataataacgagatgtaataaggccgaaataaagatattaacataaaaaaatgttgctgatgttttaaaacagggctctgaggaattttagagaaaaaaatgtaaaaatgaaaatgacatagatccgattctaatttgtttttaagacatttgttttagattttcctgaaaacgttaacgtaaatatactatatatgtacattcatggccagttatactatatttgatag
gi|2 : gaatttgaaaaagaaatcagataaacttggtgacattgcaatacacattcaagtatcacgcatccatgcacgcacccatgcacgcacatactttacaataataatatatcacggaagttaagaatcatggcagcactgtatgtatatggtgttgatcaaaatacatacgtgactcaaatctgaaaataataatacgtataattatgctaaatgtaaatacgaaaaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctaaaatagaagctatagcatttgtatacaatatgttctatgtttgtattttaatatattaatattttttttataaacaatatgttaagatgtgtttatttctaataatagtaatctccacgtccggatagctcacatatctaagcgactttagaaagtcgtttatatccatgtaagcatcagtatgaaatattaagtttaattattgatgcattaattgtatgtaaaccttactacataatcatgttttgattatccgtccaatattacaaatagtttagcaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntGAATTTG--AAAAAG-AA-A--TCAGATAAACTTGGTGACATT----GCAATACACATTCA---A-GTATCACGCATCCATGCACGCACCCATGCACGCACAT-ACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGGTGTTGATCAAAATACATACGTGACTCAAATCTGAAAATAATAATACGTATAATTATGCTAAATGTAAATACGAAAA--AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATAGAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--ATTAATAT-TTTTTTTATAAACAATATGTTAAGATGTGTTTATTTCTAATAAT----AGTAATCTCCACGTCCGGATAGCTCACATATCTAAGC-GA----CTTTAGAAAGTCGTTTATATCCATGTAAGCATCAGTATGAAATATTAAGTTTAA-TTAT----TGATGCATTAATTGTATGTAAACCTTACTA-C-ATAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGCAAATCCgtattactacccatagaaatagaataagatacaatattgagatgttgtgaggtagaaataatgatacaatcattcgccatgttaaaaatgtttttgttttttttctgacttcactgcaaaaaaaaacaacaggtgtttgaggaatttgtgataataatgtaaaaatgaaaatgacataatcgtaatcaatttttaaaacatttgttttagatattcttgaaaacgtaaagtaaagatagtaaatatgtacattcatggcagttatactattttggaaaacaaatgggagtggggaaaataccattttatataaagtagattttgggcaaccaaatgtgcttttcatgtccgatctagttgcaaatccacatattataaaccaaccgctatctggctgttttgttaatcgcgtgtaatctttaattgctgtttctttttctttcaagttttcaacacattacaacatgttcaaaaattgtatttacagcatgtatgatatagctttgaacagttataaaaagattttacttggtctcaactgaacaatcctccagtaacactcggtaatgttcgattatctccggtaacaaaagtcacaaagcttttttgaatgcacggttacgttatacaattatatatactccacctgcgacaacagcatccacagaggttcaggttagattcttgcgattctgttttactagggaacagtaacactgtattacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|20 : CAGATAAGCTTGGCGACATT----GCAATATACATTTATGTATGTATCAC-CACCCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcctaaatactctgggaatttgaaaataaatcagttaagcttggtaacattgcaatatacattcaagtgtgtattactacccatagaaatagaataagatacaatattgagatgttgtgaggtagaaataatgatacaatcattcgccatgttaaaaatgtttttgttttttttctgacttcactgcaaaaaaaaacaacaggtgtttgaggaatttgtgataataatgtaaaaatgaaaatgacataatcgtaatcaatttttaaaacatttgttttagatattcttgaaaacgtaaagtaaagatagtaaatatgtacattcatggcagttatactattttggaaaacaaatgggagtggggaaaataccattttatataaagtagattttgggcaaccaaatgtgcttttcatgtccgatctagttgcaaatccacatattataaaccaaccgctatctggctgttttgttaatcgcgtgtaatctttaattgctgtttctttttctttcaagttttcaacacattacaacatgttcaaaaattgtatttacagcatgtatgatatagctttgaacagttataaaaagattttacttggtctcaactgaacaatcctccagtaacactcggtaatgttcgattatctccggtaacaaaagtcacaaagcttttttgaatgcacggttacgttatacaattatatatactccacctgcgacaacagcatccacagaggttcaggttagattcttgcgattctgttttactagggaacagtaacactgtattacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|7 : CGTGAATCAAAACTGAAAATAACAATATGT----TTATGCTAAAT------ACG--AA--AA-AAA---------------ACA--------CGAAACCATA---TA------ATTATAATACATATAAAAATTAT-GTATGTTTTGTTAT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAC--GACTTTTTTATTT-ATATTAACAATATGTTAAGAT-TGTTTATTGTT--TATGTTTTAGTAACCTCCACATCCTGACAGCCCACATGTCTAAGT-GGAG-CCTTCAGGAAGTCGTTGCTATCCCTGTATGCGTCTGTACGAAATATAAGCTTTAA-TTAT----TGATGCATTAATTTTATATAAAATTAACTA-CTACAATCATGTTTTGATTATCCGTCCAATAT---AAATAGAGTAACAGAcaaaataaaattagatacacaatcgagatgtagtaaagcggaaatacacaactactattcgccctattaaaaatagggttgatgttttaacttcactgcaaaaaacaaaaa
gi|5 : catcactcccatctgtaaaagcagcatgttttatctataaaactggatgttttatttataaaaacaggatgtttttatcggatccgctgtttcttaaatattctggaaatttggaaaaataatcagataagcttggtgacattgcaatacacattcaatcatcacgtgttcatgtacgcatccatgcacgcacatgcttttCTCAAAACTGAATATAACACTACGTATA-TT---CTAAATGTAAATACG--AG--AA-AAA-CATATATTA---T----ATGTA-T-TAAAATTATG---TAAGTTTGGTTATC-TAAA-ATAAATGCTAT--C-T---TTG-------CAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAACATAA-ATTTTATATTAACAATATGTAAAGATGTGCTTATTTTTTATATG----AATAAATTCAACGTCTGGACAGCCCATATATCTAAGCGGG-G-CCTTCAGAAAGTCGATTATATCCATGTATGCGTCAGTAAGAAATATTAGCTTTAA--TATT---TGATGCATT-ATTTTATGTAAACTTAACTATT-ACATTCATGTTTTGATTATTGGTTCAATATTATAAATAGTGTAACAATTCC
gi|5 : AGTTTCTAAAATATTCTGGGAATTTGAA--AATAAAA-TCAC-ATAAGCTTGGTGACATTGCAAT-----TTTA-GTAT---GTAAA--CAC---CACCCAACATAAAATAAAG----TTGGATA-TAATAA--CG-AGATGTAATAAGGCCGAA--ATA-AAGA-TATTAACAT----AA-----AAAAATGTTGCTGATGT----TT---TAA----------------AACA----GGGCTCTGAGGAATTTTAGAGAAAAAAATGTAAAAATGAAAATGACATAGATCCGATTCTAATTTGTTTTTAAGACATTTGTTTTAGATTTTCCTGAAAACGTT--------AACGTAAA-----TAT--ACTATATATGTACATTCATGGCC-AGTTATA--CTATATTTGATAG-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttctaaaatattctgggaatttgaaaataaaatcacataagcttggtgacattgcaattttagtatgtaaacaccacccaacataaaataaagttggatataataacgagatgtaataaggccgaaataaagatattaacataaaaaaatgttgctgatgttttaaaacagggctctgaggaattttagagaaaaaaatgtaaaaatgaaaatgacatagatccgattctaatttgtttttaagacatttgttttagattttcctgaaaacgttaacgtaaatatactatatatgtacattcatggccagttatactatatttgatag
gi|8 : ctcaaaactgaatataacactacgtatattctaaatgtaaatacgagaaaaacatatattatatgtattaaaattatgtaagtttggttatctaaaataaatgctatctttgcaatatgttctatgtttgtattttaatataaacataaattttatattaacaatatgtaaagatgtgcttattttttatatgaataaattcaacgtctggacagcccatatatctaagcggggccttcagaaagtcgattatatccatgtatgcgtcagtaagaaatattagctttaatatttgatgcattattttatgtaaacttaactattacattcatgttttgattattggttcaatattataaatagtgtaacaattccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTTCTAAAGTATTCTGGGAATTTGAA--AATAAA--TCAG-ATAAGATTGATGACATTGCAATACACATTCAGGT-------AT---CACG--CATTCA-TG-CAAGCACATGCTTTACAATAATAATATATCACAGA---AGTTA---CGAATCATG-GCAG-CACTG--------CATGT----ATATGTTGTTGAT
gi|14 : tggaaaatattcacattatgaatcataactcccgtctaaaaacaggatgttttatctataaaaacaggatgttttcatcgaatccGTTTCTAAAGTATTCTGTGAATTTGAA--AA--AAAATCAGAATA-GCTTTGTGACATTGCAATGCACATTCAAGTATCACGCATCCATGCACGCACCCA-Taaaaatatatacgtgactcaaaataacaatacgtataattatgctaaatgtaaatacgagaataaacatatatcaggttgacaacgtaatcaaagttatgtatgttttgttatctaaaatagaagctataatatttgtatataatatgttctatgtttgttttttaatataaaaataaatttcatatcaacaatatgttaagatgtgtttat
gi|11 : aaaatattcacattataaagcattactcccatctaaaaacaggatgttttatctatataacaggatgttttatttataaaaacaggatgttttcatcgaatccGTTTCTGAAATATTCTGAGAA---------------ATCAG-ATAAGCTTGGTGACCATGCAATATACATTCAAGTgtatgcacatgctttacaataataatatatcacgaagttaagaatcattgcagc
gi|7 : gaaaaatatttacattacaaattatcactccatctataaaactttaaaacaggatggtttgtttataaaacaggatgttattatcggattcGTTTCTTAAATATTCTGGAAATTTGGA--AAAATAA-TCAG-ATAAGCTTGGTGACATTGCAATACACATTCAAaccatgcatccatgcacgcatcaatacgcgcacatgcttaaattatgattaaagataataatatatcatggaagttaagaatcattgtgacattgcatgaatatgttgttgataacaaaaacacgttaatcaaaaaaataacaatacgtatatgctaaatgtaaatacgagaaaaaaacatatatcatatgtattcaaaattatgtaagttttgttatctaaaataaatgatatgtatacaatatg
gi|19 : catcactcccatctgtaaaagcagcatgttttatctataaaactggatgttttatttataaaaacaggatgtttttatcggatccgctGTTTCTAAAATATTCTGGGAATTGGAA--AA--AAAATCAG-ATAAGCGTGGTGACATTGCAATACACATTCA----T---GTAT---CACA--CATCCA-Ttcatcacgtgttcatgtacgcatccatgcacgcacatgcttttcgtgaatcaaaactgaaaataacaatatgtttatgctaaatacgaaaaaaaacacgaaaccatataattataatacatataaaaattatgtatgttttgttatacaatatgttctatgtttgtattttaatacgacttttttatttatattaacaatatgttaagattgtttattgtttatgttttagtaacctccacatcctgacagcccacatgtctaagtggagccttcaggaagtcgttgctatccctgtatgcgtctgtacgaaatataagctttaattattgatgcattaattttatataaaattaactactacaatcatgttttgattatccgtccaatataaatagagtaacaga
gi|2 : ttggaaaatattcacattatcactttggggagtctcccatctaaaaaattttaaaacaggaagatttatctataatacagtatttTTCCTAAAT-ACTCTGGGAATTTGAA--AATAAA--TCAG-TTAAGCTTGGTAACATTGCAATATACATTCAAGTGT---GTAT---TAC---TACCCA-TA-GAAATAGAA----TAAGATA-CAATAT--TG-AGATGTTGTGAGGTAGAA--ATA-ATGA-TACAATCATTCGCCATGTT-AAAAATGTTTTTGTTTT----TTTTCTGACTTCACTGCAAAAAAAAACA-ACAGGTGTTTGAGGAATTTGTG--ATAATAATGTAAAAATGAAAATGACATA------ATCGTAATCAATTTTTAAAACATTTGTTTTAGATATTCTTGAAAACGTA--------AA-GTAAA-----GAT--AGTAAATATGTACATTCATGG-C-AGTTATA--CTATTTTGGAAAACAAATGGGAGTGGGGAAAATACCATTTTATATAAAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATGTCCGATCTAGTTGCAAATCCACATATTATA----AACCAACCGCTATCTGGCTGTTTTGTTA----AT-CGCGTGTAA------TCTTTAATTGCTGTTTCTTTTTCTTTCA-AGT-TTTCAACACATT-ACAACATG-TTCAAAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTGAACAGTTATAAA--AAGATTTTACTTGGTCTCAACTGAACAATCCTCCAG-----TAACACT-CGGTAATGTTCGAT------TATCTCCGGT-AACAAAAGTCACAAAG-----CTTTTTTGAATGCACG--------------GTTACGTTA--TACAATTATATATACTCCACCTGCGACAACAGCATCCACA-----GAGGTTCAGGTTAGATTCTTGCGATTCTGTTTTACTAGGGAACAGTA-----ACACTGTAgcatgcacatgcccatcatgattaattaagataataatatatc
gi|4 : gaatttgaaaaagaaatcagataaacttggtgacattgcaatacacattcaagtatcacgcatccatgcacgcacccatgcacgcacatactttacaataataatatatcacggaagttaagaatcatggcagcactgtatgtatatggtgttgatcaaaatacatacgtgactcaaatctgaaaataataatacgtataattatgctaaatgtaaatacgaaaaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctaaaatagaagctatagcatttgtatacaatatgttctatgtttgtattttaatatattaatattttttttataaacaatatgttaagatgtgtttatttctaataatagtaatctccacgtccggatagctcacatatctaagcgactttagaaagtcgtttatatccatgtaagcatcagtatgaaatattaagtttaattattgatgcattaattgtatgtaaaccttactacataatcatgttttgattatccgtccaatattacaaatagtttagcaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTTTCTAAAATACTCTGGGAATTTGAAGAAAAAAAAATCAG-TTAAGCTTGATGACATTGCAGTATACATTGAAGTGT---GTTT---TGC---CACCTA-TA-AAAACAAAA----TTAGATA-CAAAAT--CG-AGATGTAGTGAGGCTGAA--ATA-ATGA-TACTGTCATTCGCCATGTTAAAAAATGTTGTTGATGT----TT---TAACTttacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|17 : tggaaaatattcacattataaatcattactcccatctaaaaacaggatgttttatctataaaaacaggatgttttaatcaaatcagttattctttgaatttgaaaaaaaaaatcagataagcttggtgacattcagtgcaatacacattcgagtatcgtgcatccatgcatgcacctatgcacgcacatgctttacaataataataatatatcagggaagttaagaatcgtgacagcactgcatgtatatgttgttgataaaaatatatacgtgacttaaaactgaaaataacaattagtacaattatgcttaatgtaaatactagaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctgaaatagaagctatagcatttgttcgcattttaatataaaaaaataaatttcatatcaacaatatgtaaagatgtgtttatttctaatatgagtaaactccatgtccggccagcccacatatctaaacgactttagaaagtcgtttatatccgtgtaagcatcagtatgaaatattaggtttgattattgatacattaattttttttaaacttaactactacagtcatgttttgattatccgtccaatattacaaatagtttagaaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTAAAGTATTCTTGGAATTTGAA--AAATAA--TCAG-ATGAGATTGGTGACATTGCAATACACATTCAAGTAT---
gi|20 : gaaaatattcacattacaaaaaaatcactccaatctgttaacacaaaatgttttatctgaaaaaaaaacgggatgttttatctttaaaaacaggatgttcttatctataactgggtgtttttatcggatccgCAG-ATAAGCTTGGCGACATTGCAATATACATTTATGTAT---GTAT---CAC---CACCCA-TC-AAAATAAAA----TTAGATA-CACAAT--CG-AGATGTAGTAAAGCGGAA--ATACACAACTACT---ATTCGCCCTATT-AAAAATAGGGTTGATGT----TT---TAACTTCACTGCAAAAActtgcatacatgcacatg
gi|6 : TAAGACATTTATTTTAGATTTTCCTGAAAACAAACCAAGACCAATGTAAATTATTGCTGGAGTAGATATGTACATCCATTATC-AGATATA--CTTTATTGGATAG-GAATGGGAGTGGGCCAC-TACCATTTTATATAGAGTAGGTTTTTGGCAACCAAATTTG------TATTTCATTTGCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCACTTTCTCATTGTTTCTTAA----ATACGCGTGCAACAAAGATTTTTTATTGAAGTTTCTTTTTATTTAA-AAA-TCTCAACTTATT-ACAACATATTTCACAAATTGCAT----TTT-CAGCATGTATGATATAGCTTTCAACAGTAATAAA--AAGATT-TGTTTTGTCTCA----A----------AG-----TAACACTCTGATAAC--------------------------AAAAAGTCGCTAAA-----C-TGAATGGATGCACAGAAAATTCCAAACTATTAC-----------------GTACTCGGTCTGCGACAAAAGCATTCACATAATTGA-GTTCAGATTCATTTC--GTGGTTACATTGTAATAGGGAATGCTATAATAATACacaaaaa
gi|13 : atatattaaagagtaacaaattctaaggctgcgttcagttcaacacTGTA--------AA--TAAGC----GGG--AGT-GCTATGTACATTCATGG-CCAGTTATATACTTTATTGGATAG-GAATGGAAGTTGGGACAATACCATTTTATATAGAGTAGGTTTTGGGAAACCAAATTTGTTTTGTTTTTTTATTTCCGGCCTAGTTGCGAATCCACTTATTAT--ATCAACCAATCGCTTTCTTACTGTTT--TCTTAAAAT-TGCGTCCAACAAAG-TTTTTTTCTCTTGTTTCTTTTTACT--T-AGTATTTCAA---ATTAACAACagaacatataatacaaaatttgttttgttttaaaatgtgacaaggatttaaatatagtgcctcaaattttgtttgtacctagtccgaaaaacctgggcctcagattagctatgggcctg
gi|9 : GCGTGTAA------TTTTAAATTGCTGTTTCTTTTTTTTTTTTAAT-TTTCAACACATT-GCCACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGGTATAGCTATCAACAGTTATAAA--AATATCTTGTTAGGTCTCATCTGAACAATCTTCCAG-----TAGCACT-CGGTAACTTTCGGT------TATCTCCGATAACAAAAAGTCGCGAGG-----C-TGATTGGATGCACGGAAGATTCCGAA-CGTTACGT----TATA--TATATGTACTTCGCCTACGACAACAGCATCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGAAAGATTATAATAATACTGTA
gi|12 : tgTTTATTGCTGTTTCTTTTTATTTC--AAT-TTTCAACATATT-ACA---TGCTTCACAAATTGTAT----TTG-CAACATGTATGGTATAGTTTGCAACAGTTATAAA--ACTATTTTGTTTGGTTTCATCTGAACAGCCCTACAG-----TAACATC-CGTTTGTTTTCGGT------TATCTTCGATAACAAAATGTCGCAAAG-----C-TGATCGGATGCACGGAATATTCCGAACCG--------------------TGTGC---------GACAACAGTGTCCACA-----TAGGTTCAGATTCATTttataatttatatagttttaaaatgcaaaaaaaacatttgatatagtgcctcaaagttttttcgtacctagcactaaaaacaggtagacgccggcctccctgtgcctcagagtagctacgggcc
gi|10 : ATTGCTGTTCCTTTTTAATTCA-ATT-TTTCAACACATT-ATAACATGGTTCACAAATTGTAT----TTA-CAGC----ATGATATAGTTTTCAACAGTTATAAA--ATTATTTTGTGAGGTATCATCTGAACAACCCTCAAG-----AAACACT-TGTTTGTTTTCGGTCACTAGTATCTCTGATAACAAAATGTCGCTAAG-----C-TGATAGGATGCACGGAAAATTCCAAACCGTTTC-TTAAATATG--TATACATACACCATCTGCGACAACAGCGTCCACA-----TAGGTTCAGATTCATTTCTTCTGGTTCTGTTGTACTAGCGAATGGTACAG---TATTGTAaatagtaatacagttttataatttatttagttttaaaatgcaacaaggatatttaatatagtgcctcaaatttgtttcgtacctagcccgaaaaatagggggataccggctttcctgggtctcagagtagctacgggcct
gi|15 : TGTTTCCTTTTATTTCA-ATT-TTTCAGC-CGTT-ACAACATGTTTCACAAATTGTATACTATTGGCAGCATGTAT--TATAGCTTTCAACAGTTATGAAACAAAAT--TGTTCGGTTTCATCTGAACAGCCCTCTAGAAGCCTAGCATT-CGCTTGATTTCGGT------TATCTCCGACAACAAAACGTCGCGAAACTGATC-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TAA--TATatttataaagttttaaaatgcaacaagtgcctcaattttttcatacctagttaaaaaactgggaggcccttaagggcaagggccttcctgggtctcaaagcagctacaggcc
gi|18 : TA--TATA--TATACGTAATTCTCCTGCAACAACAGCGTCTATA-----GGTTTTCAGATTCATTTCCTGTGATTCCGTTGTACTGAGGAATGATATGGCGATACAGTcagtacatt
gi|16 : A--TATA--TATACACACTCCGTCTGCGGCAACAACGTCCACA-----TAGGTTTAGATTCATTTCTTGTGGTTCTGTTGTAATAGGGAATGTTATCATAATGCAGTAtttataatttatttactttaaaatgaaacacatatttttcgtactaatagcccgaaaaacagggaggccggcacagggaggcatcggcctcccgctgtgcctcagagtagctacgggcct
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): ACCTAGCCCGAAAAACAGGGAGTGTGGTGCCTCAGAGTAACTATGGGCCTGATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333333333333333 111111 55555555555555555555555 2222222222 11 11111111 1111 2222 2222222 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111 111 22222 1111 4444444444 22222222 1 3333333333 1 11 222222 11 1 33333 1 444444 1111 11111 111111 11111 111111111 11111
lowQualScore : 4 111111 5555555555555555555555 888888 55 88888888888888888888888 4 4 4 0 1 777 1 55 4 4 55 8888 1 7777777777 4 777 22 1 1 0 66 0 1 66 00 4 4 0 77777 6 4 777 2 4 4 4 2 77 777 4 66 88888888 5 77 5 1 3 4444 6 3333 0 0 6 6 7 2222222 5 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 444 1 0 8 7 3 77 6 6 1 1 6 6 3 6 4444 111 3 8 99 3 77777 1 3333 1 1 1111111111 11 0 4 99999999 3 4444444444 0 3 11 1 8 0 3 3 888888 3 2 33 7 1 0 55555 0 999999 666 5 5 3 5 3 2222 5 0 22 1 1 1 0 44444 0 3 333 666666 6 4 44444 5 2 2 11 555555555 66 11 22222 0 1 999 1
lowQualScore : . ...... ...................... ...... .. ....................... . . . . . ... . .. . . .. .... . .......... . ... .. . . . .. . . .. .. . . . ..... . . ... . . . . . .. ... . .. ........ . .. . . . .... . .... . . . . . ....... . ............................................................................................................................... . ... . . . . . .. . . . . . . . . .... ... . . .. . ..... . .... . . .......... .. . . ........ . .......... . . .. . . . . . ...... . . .. . . . ..... . ...... ... . . . . . .... . . .. . . . . ..... . . ... ...... . . ..... . . . .. ......... .. .. ..... . . ... .
lowQualScore : 0 555555 5555555555555555555555 555555 55 88888888888888888888888 4 4 6 9 7 888 1 00 0 0 55 5555 9 2222222222 4 888 88 4 4 3 11 8 8 11 66 4 4 1 11111 9 4 888 2 4 4 4 2 77 888 4 11 11111111 0 99 7 7 5 2222 7 7777 7 3 7 7 3 5555555 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 000 4 8 3 5 5 33 7 7 0 0 7 7 7 7 2222 777 7 0 00 0 22222 0 3333 0 0 3333333333 77 2 0 00000000 2 2222222222 8 2 00 0 0 8 2 0 888888 5 0 88 0 0 0 88888 0 222222 999 9 0 4 0 6 1111 7 7 66 7 0 7 4 33333 1 0 777 444444 6 0 33333 7 7 4 44 333333333 99 44 55555 1 4 777 4
consensus : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA-CAGGATGTTTTATCTAT---A-AA-CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAA-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAA-TT-ATT---T---GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATACTCTGGGAATTTG-AA---AAAAAAATCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-A--CAGGTTTCTGAGGAATTCGTGAGAAAAAAATGTAAAAACGAAAATGACATA-ATCC-ATC-TAATCAATTTTTAAGACATTTGTTTTAGATNTTCCTGAAAACGTA--------AACGTAAATGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTATATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATNTG------CTTTTCATNTCCGGCCTAGTTGCAAATCCACTTATTAT--ATCAACCAACCGCTTTCTNGCTG-TTTCGT--NAAT-CGCGTGTAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTTGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TTA--TATA--TATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAATGNTATAGTAATACTGTA
Reference ( family-951 ) : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA-CAGGATGTTTTATCT-T---A-AA-CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGGATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAN-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAA-TT-ATT---T---GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATATTCTGGGAATTTG-AA---AAAAAAATCAGATAAGCTTGGTGACATTGCAATACACATTCAAGTGTGTAT-CACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-A--CAGGTNTCTGAGGAATTCGNGAGANAANAATGTAAAAATGAAAATGACATAGATCCGATCGTAATCNGTTTTTAAGACATTTGTTTTAGATTTTCCTGAAAACGTA--------AACGTAAACGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTNTATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATTTG------TTTTTCATTTCCGGCCTAGTTGCGAATCCACTTATTAT--ATCAACCAACCGCTTTCTNACTG-TTTC-T--NAAT-CGCGTGCAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTNGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TTA--TATA--TATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAACGNTATAATAATACTGTA
gi|1 : GAAAATATTCACATTATAAATCA-TTA------CTTC----------------------CATCT------A--AAA-CAGGATGTTTTATCTAT---ATAA-CAGGATGTT-T-ATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAT-A-A-A--TCAGATGAGCTTGGTGACATT----GCAATACACATTGAAGTATCACGCATCCATGCACGCACCCATGTACGCGCATACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGTTGTTGATAAAAATATGTACGTGACTCAAATCTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTAAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-AAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTCCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-TCTTTAGAAAGTCGTTTACATCCATGTAAGCATCAGTATGAAATATCAGGTTTAATTT-ATTTAGT---GATTCATTAATTTTATGTAATCTTAACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGTGTAGCAAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAATTATTCTGGGAATTTGAAA---AAAAAAATCAGTTACGCTTGGTGACGTTGCAATATACATTCAAGTGTGTAT-TGCCACCCA-TA-AAAATAAAATACAATACAATATCAAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAATTTCACTGC-AAAAAGAAAC-ACCCAGGTTTCTGAGGAATTCGTGA-AAAAAAATATAAAAACGAAAATGACATA-ATCC-----TAATCAATTTTTAAAACATTTCTTTTAGATATTCTTGAAAATGTA--------AACGTAAA-GAT------AGTAGATATGTACATTCATGG-CGGTTATA--CTATGCTGGATAG-GAATAGGAGTGGGGGAAATACCATTTTATAAAGAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATATCCGGTCTAGTTGCAAATATACTTATTATAAACCAACCAACCGCTTTCTGGCTG-TTTTGT--CTAT-CGCGTGTAA------TTTTTTATTGCTGTTTCTTTTTATTTCT-AAT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGTTTGTATGATATAGCTTTCAACAGTTATAAAAAGATTCTGTTTGGTCTCATCTGAACAATCCTCCAG-----TAACACTTGGTAATTTTCGGT------TATCTCCTATAAAAAAAAGTCGCAAAG-----C-TGATTGGATGCACGGAAGATTACGGACCGTTACGTTA--TATA--TATATGTACTCCGTCTACGACAACAGCGTCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGGAATACTATAGTTATACTGTA
gi|10 : ATTGCTGTTCCTTTTTAATTCA-ATT-TTTCAACACATT-ATAACATGGTTCACAAATTGTAT----TTA-CAGCATG----ATATAGTTTTCAACAGTTATAAAATTATTTTGTGAGGTATCATCTGAACAACCCTCAAG-----AAACACTTGTTTGTTTTCGGTCACTAGTATCTCTGATAACAAAATGTCGCTAAG-----C-TGATAGGATGCACGGAAAATTCCAAACCGTTTC-TTAAATATG--TATACATACACCATCTGCGACAACAGCGTCCACA-----TAGGTTCAGATTCATTTCTTCTGGTTCTGTTGTACTAGCGAATGGTACAGTA
gi|11 : AAAATATTTACATTACAAATTA-TCA------CTCC-----------------------ATCT------ATAAAA-C-------TTTA--------A-AA-CAGGATGGT-TTGTTTATAAAA-CAGGATGTTATTATCGGATTCG---TTTCTGAAATATTCTG-----------AG-A-A-A--TCAGATAAGCTTGGTGACCAT----GCAATATACATTCAAGTACCATGCATCCATGCACGCATCAATACGCGCACATGCTTAAATTATGATTAAAGATA---ATAATATATCATGGAAGTTAAGAATCATTGTGACATTGCATGAATATGTTGTTGATAACAA-AAACACGTTAATCAAA----AAAATAACAATACGTA----TATGCTAAATGTAAATACG--AGAAAA-AAA-CATATATCA--T-----ATGTATT-CAAAATTATG---TAAGTTTTGTTATC-TAAA-ATA-AATG--ATA--------TGT-AT--ACAATATGttgtaatttataaagttttaaaatgcaacaagtgcctcaattttttcatacctagttaaaaaactgggaggcccttaagggcaagggccttcctgggtctcaaagcagctacaggcc
gi|12 : gaTTTATTGCTGTTTCTTTTTATTTCA-A-T-TTTCAACATATT-ACA---TGCTTCACAAATTGTAT----TTG-CAACATGTATGGTATAGTTTGCAACAGTTATAAAACTATTTTGTTTGGTTTCATCTGAACAGCCCTACAG-----TAACATCCGTTTGTTTTCGGT------TATCTTCGATAACAAAATGTCGCAAAG-----C-TGATCGGATGCACGGAATATTCCGAACCGT--------------------G---------TGCGACAACAGTGTCCACA-----TAGGTTCAGATTCATT
gi|13 : GTA--------AA--TAAGCGGG------AGT-GCTATGTACATTCATGGCCAGTTATATACTTTATTGGATAG-GAATGGAAGTTGGGACAATACCATTTTATATAGAGTAGGTTTTGGGAAACCAAATTTGTTTTGTTTTTTTATTTCCGGCCTAGTTGCGAATCCACTTATTAT--ATCAACCAATCGCTTTCTTACTGTTTTC-TTAAAAT-TGCGTCCAACAAAG-TTTTTTTCTCTTGTTTCTTTTTACTT---AGTATTTCAA---ATTAACAACaatagtaatacagttttataatttatttagttttaaaatgcaacaaggatatttaatatagtgcctcaaatttgtttcgtacctagcccgaaaaatagggggataccggctttcctgggtctcagagtagctacgggcct
gi|14 : tAAAATATTCACATTATAAAGCA-TTA------CTCC----------------------CATCT------A--AAAACAGGATGTTTTATCTAT---ATAA-CAGGATGTT-TTATTTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGTGAATTTGAAAAA-A-A-A--TCAGAATAGCTTTGTGACATT----GCAATGCACATTCAAGTATCACGCATCCATGCACGCACCCATGTATGCACATGCT----------TTACA-ATA---ATAATATATCAC-GAAGTTAAGAATCATTGCAGC
gi|15 : TGTTTCCTTTTATTTCA-ATT-TTTCAGC-CGTT-ACAACATGTTTCACAAATTGTATACTATTGGCAGCATGTAT--TATAGCTTTCAACAGTTATGAAACAAAATTGTTCGGTTTCATCTGAACAGCCCTCTAGAAGCCTAGCATTCGCTTGATTTCGGT------TATCTCCGACAACAAAACGTCGCGAAACTGATC-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TAA--TAT
gi|16 : A--TATA--TATACACACTCCGTCTGCGGCAACAACGTCCACA-----TAGGTTTAGATTCATTTCTTGTGGTTCTGTTGTAATAGGGAATGTTATCATAATGCAGTAcagtacatt
gi|17 : GAAAATATTCACATTACAAAAAAATCA------CTCCAATCTGTTAACACAAAATGTTTTATCTGAAAAAA--AAA-CGGGATGTTTTATCT-TTAAA-AA-CAGGATGTTCTTATCTATAA---CTGGGTGTTTTTATCGGATCCG---TTT--AAAGTATTCTTGGAATTTGAAAAA-T-A-A--TCAGATGAGATTGGTGACATT----GCAATACACATTCAAGTATCTTGCATACATGCACttataatttgtttagttttaaaatgcaatatggatgttcaatatagtgtctcaaaatttgttcgtacctagcacgaaaaacagggagtgaccggcttccctgggcctcagagtagctacaggcctgcg
gi|18 : TA--TATA--TATACGTAATTCTCCTGCAACAACAGCGTCTATA-----GGTTTTCAGATTCATTTCCTGTGATTCCGTTGTACTGAGGAATGATATGGCGATACAGTatg
gi|19 : GAAAATATTCACATTATCACT---TTGGGGAGTCTCC----------------------CATCT------A--AAA-AA-----TTTTA--------A-AA-CAGGAAGAT-TTATCTATAATA-CAG--TATTT-----------G---TTTCTAAAATATTCTGGGAATTGGAAAAA-A-A-A--TCAGATAAGCGTGGTGACATT----GCAATACACATTCATGTATCACACATCCATGCATGCA--CATGCCCAT-CATGATTAA-------TTAAG-ATA---ATAATATATCtttataatttatttactttaaaatgaaacacatatttttcgtactaatagcccgaaaaacagggaggccggcacagggaggcatcggcctcccgctgtgcctcagagtagctacgggcct
gi|2 : ttgGAATTTGAAAAAGA-A-A--TCAGATAAACTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGGTGTTGATCAAAATACATACGTGACTCAAATCTGAAAATAATAATACGTATAATTATGCTAAATGTAAATACGAAAA--AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--ATTAATAT-TTTTTTTATAAACAATATGTTAAGATGTGTTTATTTCTAATAAT----AGTAATCTCCACGTCCGGATAGCTCACATATCTAAGC-GA----CTTTAGAAAGTCGTTTATATCCATGTAAGCATCAGTATGAAATATTAAGTTTAA-TT-A-T---T---GATGCATTAATTGTATGTAAACCTTACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGCAAATCC
gi|2 : TTTCCTAAATACTCTGGGAATTTG-AA---AATAAA-TCAGTTAAGCTTGGTAACATTGCAATATACATTCAAGTGTGTAT-TACTACCCA-TA-GAAATAGAATAAGATACAATATTGAGATGTTGTGAGGTAGAAATA-ATGA-TACAATCATTCGCCATGTT-AAAAATGTTTTTGTTTT----TTTTCTGACTTCACTGCAAAAAA-AAACAA--CAGGTGTTTGAGGAATTTGT--GATAATAATGTAAAAATGAAAATGACATA------ATCGTAATCAATTTTTAAAACATTTGTTTTAGATATTCTTGAAAACGTA--------AA-GTAAA-GAT------AGTAAATATGTACATTCATGG-CAGTTATA--CTATTTTGGAAAACAAATGGGAGTGGGGAAAATACCATTTTATATAAAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATGTCCGATCTAGTTGCAAATCCACATATTAT--A--AACCAACCGCTATCTGGCTG-TTTTGT--TAAT-CGCGTGTAA------TCTTTAATTGCTGTTTCTTTTTCTTTCA-AGT-TTTCAACACATT-ACAACATG-TTCAAAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTGAACAGTTATAAAAAGATTTTACTTGGTCTCAACTGAACAATCCTCCAG-----TAACACTCGGTAATGTTCGAT------TATCTCCGGTAACAAAA-GTCACAAAG-----CTTTTTTGAATGCACG--------------GTTACGTTA--TACAATTATATATACTCCACCTGCGACAACAGCATCCACA-----GAGGTTCAGGTTAGATTCTTGCGATTCTGTTTTACTAGGGAAC-----AGTAACACTGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcctaaatactctgggaatttgaaaataaatcagttaagcttggtaacattgcaatatacattcaagtgtgtattactacccatagaaatagaataagatacaatattgagatgttgtgaggtagaaataatgatacaatcattcgccatgttaaaaatgtttttgttttttttctgacttcactgcaaaaaaaaacaacaggtgtttgaggaatttgtgataataatgtaaaaatgaaaatgacataatcgtaatcaatttttaaaacatttgttttagatattcttgaaaacgtaaagtaaagatagtaaatatgtacattcatggcagttatactattttggaaaacaaatgggagtggggaaaataccattttatataaagtagattttgggcaaccaaatgtgcttttcatgtccgatctagttgcaaatccacatattataaaccaaccgctatctggctgttttgttaatcgcgtgtaatctttaattgctgtttctttttctttcaagttttcaacacattacaacatgttcaaaaattgtatttacagcatgtatgatatagctttgaacagttataaaaagattttacttggtctcaactgaacaatcctccagtaacactcggtaatgttcgattatctccggtaacaaaagtcacaaagcttttttgaatgcacggttacgttatacaattatatatactccacctgcgacaacagcatccacagaggttcaggttagattcttgcgattctgttttactagggaacagtaacactgtattacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|20 : gaatttgaaaaagaaatcagataaacttggtgacattgcaatacacattcaagtatcacgcatccatgcacgcacccatgcacgcacatactttacaataataatatatcacggaagttaagaatcatggcagcactgtatgtatatggtgttgatcaaaatacatacgtgactcaaatctgaaaataataatacgtataattatgctaaatgtaaatacgaaaaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctaaaatagaagctatagcatttgtatacaatatgttctatgtttgtattttaatatattaatattttttttataaacaatatgttaagatgtgtttatttctaataatagtaatctccacgtccggatagctcacatatctaagcgactttagaaagtcgtttatatccatgtaagcatcagtatgaaatattaagtttaattattgatgcattaattgtatgtaaaccttactacataatcatgttttgattatccgtccaatattacaaatagtttagcaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGATAAGCTTGGCGACATTGCAATATACATTTATGTATGTAT-CACCACCCA-TC-AAAATAAAATTAGATACACAATCGAGATGTAGTAAAGCGGAAATACACAACTACT---ATTCGCCCTATT-AAAAATAGGGTTGATGT----TT---TAACTTCACTGC-AAAAA-Attacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|22 : GAAAGTATTCACATTCTAAATCA-TTA------CTCC----------------------AATCT------A--AAA-caaaaa
gi|3 : gAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAAACAGGATGTTTTATCTAT---ATAG-CAAGATGTT-TTATCTATAAAAACAGGATGTTTTCCTAGAATCCG---TTTCTAAAGTGTTCTTGGAATTTGAAAAA-A-ATA--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCATGCACCCATGTACGCACATGCT----------TTACA-ATA---ATTATATATCACGGAAGTTATGAATCAGGGCAGCGCTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCCAAACTGAAAATAACAATACGTATAACTATGCTAAATGAAAATACG--AG--AA-AAAACATATATCAGGTTGACAACGTAAT-CAAAAGTGTG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATAATAAGATGTGTTTGTTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-GGTCTTTAGAAAGT---TTATATCCATGTAATCATCCGTATGAAATATCAGGTTTAA-TTTATT---TAGTGATGCATTAATTTTATGTAAACTAAACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGCGTAGCAAATC-CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTTTAAAATACTCTGGAAATTTG-AA---AAAAAAATCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TG-AAAATGAAATAAAATACAATATCAAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCAATGTA-AAAAATGTTGTTGATGTTCAATT---TTTTTTCACTGC-AAAAT-ACAT-C--CAGGTTTCTGAGGAATTCGacg
gi|4 : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA------------------------A-CAGGATGTT-TTATCTATAAAAACAGGATGTTTTAATCAAATCAG---TT--------ATTCTTTGAATTTGAAAAA-A-A-AAATCAGATAAGCTTGGTGACATTCAGTGCAATACACATTCGAGTATCGTGCATCCATGCATGCACCTATGCACGCACATGCT----------TTACA-ATAATAATAATATATCAGGGAAGTTAAGAATCGTGACAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTTAAAACTGAAAATAACAATTAGTACAATTATGCTTAATGTAAATACT--AGA-AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TGAA-ATA-GAAGCTATAGCAT---T------------------------------TGTTCGCATTTTAATATAAAAAAATAA-ATTTCATATCAACAATATGTAAAGATGTGTTTATTTCTAATATG----AGTAAACTCCATGTCCGGCCAGCCCACATATCTAAAC-GA----CTTTAGAAAGTCGTTTATATCCGTGTAAGCATCAGTATGAAATATTAGGTTTGA-TT-A-T---T---GATACATTAATTTTTTTTAAACTTAACTACTACAGTCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGAAAATCC
gi|4 : tgTTTCTAAAATACTCTGGGAATTTG-AAGAAAAAAAAATCAGTTAAGCTTGATGACATTGCAGTATACATTGAAGTGTGTTT-TGCCACCTA-TA-AAAACAAAATTAGATACAAAATCGAGATGTAGTGAGGCTGAAATA-ATGA-TACTGTCATTCGCCATGTTAAAAAATGTTGTTGATGT----TT---TAACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttctaaaatactctgggaatttgaagaaaaaaaaatcagttaagcttgatgacattgcagtatacattgaagtgtgttttgccacctataaaaacaaaattagatacaaaatcgagatgtagtgaggctgaaataatgatactgtcattcgccatgttaaaaaatgttgttgatgttttaact
gi|5 : tggaaaatattcacattataaatcattactcccatctaaaaacaggatgttttatctataaaaacaggatgttttaatcaaatcagttattctttgaatttgaaaaaaaaaatcagataagcttggtgacattcagtgcaatacacattcgagtatcgtgcatccatgcatgcacctatgcacgcacatgctttacaataataataatatatcagggaagttaagaatcgtgacagcactgcatgtatatgttgttgataaaaatatatacgtgacttaaaactgaaaataacaattagtacaattatgcttaatgtaaatactagaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctgaaatagaagctatagcatttgttcgcattttaatataaaaaaataaatttcatatcaacaatatgtaaagatgtgtttatttctaatatgagtaaactccatgtccggccagcccacatatctaaacgactttagaaagtcgtttatatccgtgtaagcatcagtatgaaatattaggtttgattattgatacattaattttttttaaacttaactactacagtcatgttttgattatccgtccaatattacaaatagtttagaaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCAAAACTGAATATAACACTACGTATA-TT---CTAAATGTAAATACG--AG--AA-AAA-CATATATTA---T----ATGT-AT-TAAAATTATG---TAAGTTTGGTTATC-TAAA-ATA-AATGCTAT--C-T---TTG-------CAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAACATAA-ATTTTATATTAACAATATGTAAAGATGTGCTTATTTTTTATATG----AATAAATTCAACGTCTGGACAGCCCATATATCTAAGCGGG-G-CCTTCAGAAAGTCGATTATATCCATGTATGCGTCAGTAAGAAATATTAGCTTTAA--T-ATT---T---GATGCATT-ATTTTATGTAAACTTAACTATTACATTCATGTTTTGATTATTGGTTCAATATTATAAATAGTGTAACAATTCC
gi|5 : AGTTTCTAAAATATTCTGGGAATTTG-AA---AATAAAATCACATAAGCTTGGTGACATTGCAAT-----TTTA-GTATGTAAACACCACCCAACATAAAATAAAGTTGGATATAATAACGAGATGTAATAAGGCCGAAATA-AAGA-TATTAACAT----AA-----AAAAATGTTGCTGATGT----TT---TAA------------------A--A--CAGGGCTCTGAGGAATTTTAGAGAAAAAAATGTAAAAATGAAAATGACATAGATCCGATTCTAATTTGTTTTTAAGACATTTGTTTTAGATTTTCCTGAAAACGTT--------AACGTAAAT-AT------ACTATATATGTACATTCATGGCCAGTTATA--CTATATTTGATAG-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttctaaaatattctgggaatttgaaaataaaatcacataagcttggtgacattgcaattttagtatgtaaacaccacccaacataaaataaagttggatataataacgagatgtaataaggccgaaataaagatattaacataaaaaaatgttgctgatgttttaaaacagggctctgaggaattttagagaaaaaaatgtaaaaatgaaaatgacatagatccgattctaatttgtttttaagacatttgttttagattttcctgaaaacgttaacgtaaatatactatatatgtacattcatggccagttatactatatttgatag
gi|6 : ctcaaaactgaatataacactacgtatattctaaatgtaaatacgagaaaaacatatattatatgtattaaaattatgtaagtttggttatctaaaataaatgctatctttgcaatatgttctatgtttgtattttaatataaacataaattttatattaacaatatgtaaagatgtgcttattttttatatgaataaattcaacgtctggacagcccatatatctaagcggggccttcagaaagtcgattatatccatgtatgcgtcagtaagaaatattagctttaatatttgatgcattattttatgtaaacttaactattacattcatgttttgattattggttcaatattataaatagtgtaacaattccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAGACATTTATTTTAGATTTTCCTGAAAACAAACCAAGACCAATGTAAATTATTGCTGGAGTAGATATGTACATCCATTATCAGATATA--CTTTATTGGATAG-GAATGGGAGTGGGCCAC-TACCATTTTATATAGAGTAGGTTTTTGGCAACCAAATTTG------TATTTCATTTGCGGCCTAGTTGCAAATCCACTTATTAT--ATCAACCAACCACTTTCTCATTG-TTTCTT--AAATACGCGTGCAACAAAGATTTTTTATTGAAGTTTCTTTTTATTTAA-AAA-TCTCAACTTATT-ACAACATATTTCACAAATTGCAT----TTT-CAGCATGTATGATATAGCTTTCAACAGTAATAAAAAGA-TTTGTTTTGTCTCA----A----------AG-----TAACAC-------------------------TCTGATAACAAAAAGTCGCTAAA-----C-TGAATGGATGCACAGAAAATTCCAAAC--------TA--T-------TACGTACTCGGTCTGCGACAAAAGCATTCACATAATTGA-GTTCAGATTCATTTC--GTGGTTACATTGTAATAGGGAATGCTATAATAATAC
gi|7 : atatattaaagagtaacaaattctaaggctgcgttcagttcaacacCA-TCA------CTCC----------------------CATCTGTA---A--AAG-CAGCATGTTTTATCTAT---A-AAACTGGATGTT-TTATTTATAAAAACAGGATGTTTTTATCGGATCCGCTGTTTCTTAAATATTCTGGAAATTTGGAAAA-ATA-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAATCATCACGTGTTCATGTACGCATCCATGCACGCACATGCT----------TT-----TC---GTGA---ATCA---AAACTGAAAAT------AACA--------ATATGTTTATGCTAA------ATACG------AAAA---AAAACACGAAACCATATAATTAT----AATACATATA--------AA-AAT-TATGTAT--GTTT-----TGTTATACAA---TATGTTCTATG-TTTG-TATT-T-TA-ATACGA--CTTTTTTAT---TTAT-ATTAACAATATGTTAAGATTGTTTATTGTTTATGTTTTAGTAagaacatataatacaaaatttgttttgttttaaaatgtgacaaggatttaaatatagtgcctcaaattttgtttgtacctagtccgaaaaacctgggcctcagattagctatgggcctg
gi|7 : CGTGAATCAAAACTGAAAATAACAATATGT----TTATGCTAAAT------ACG--AA--AA-AAA---------------ACA--------CGAAACCATA---TA------ATTATAATACATATA-AAAATTAT-GTATGTTTTGTTAT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAC--GACTTTTTTATTT-ATATTAACAATATGTTAAGAT-TGTTTATTGTT--TATGTTTTAGTAACCTCCACATCCTGACAGCCCACATGTCTAAGT-GGAG-CCTTCAGGAAGTCGTTGCTATCCCTGTATGCGTCTGTACGAAATATAAGCTTTAA-TT-ATT-------GATGCATTAATTTTATATAAAATTAACTACTACAATCATGTTTTGATTATCCGTCCAATAT---AAATAGAGTAACAGAacctccacatcctgacagcccacatgtctaagtggagccttcaggaagtcgttgctatccctgtatgcgtctgtacgaaatataagctttaattattgatgcattaattttatataaaattaactactacaatcatgttttgattatccgtccaatataaatagagtaacaga
gi|8 : catcactcccatctgtaaaagcagcatgttttatctataaaactggatgttttatttataaaaacaggatgtttttatcggatccgctgtttcttaaatattctggaaatttggaaaaataatcagataagcttggtgacattgcaatacacattcaatcatcacgtgttcatgtacgcatccatgcacgcacatgcttttGAAAATATTCACATTATGAATCA-TAA------CTCC----------------------CGTCT------A--AAA------------------------A-CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAT-A-A-A--TCAGATAAGATTGATGACATT----GCAATACACATTCAGGTATCACGCATTCATGCA-----------A-GCACATGCT----------TTACA-ATA---ATAATATATCACAGAAGTTACGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAA-------TAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AATAAA-CATATATCAGGTTGACAACGTAAT-CAAAGTTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAATAT---TTGT-AT--ATAATATGT--------TCTA-TGTTTGTTTTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTAT
gi|9 : tgGCGTGTAA------TTTTAAATTGCTGTTTCTTTTTTTTTTTTAAT-TTTCAACACATT-GCCACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGGTATAGCTATCAACAGTTATAAAAATATCTTGTTAGGTCTCATCTGAACAATCTTCCAG-----TAGCACTCGGTAACTTTCGGT------TATCTCCGATAACAAAAAGTCGCGAGG-----C-TGATTGGATGCACGGAAGATTCCGAA-CGTTAC-GT---TATA--TATATGTACTTCGCCTACGACAACAGCATCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGAAAGATTATAATAATACTGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCTAGCCCGAAAAACAGGGAGTGTGGTGCCTCAGAGTAACTATGGGCCTGATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333333333333333 111111 33333333333333333333 11 2222222222 11 11111111 1111 2222 22222222 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111 111 111111 22 1 555555 22222222 1 3333333333 11 222222 222 111 1 444444 1111 11111 111111 11111 111111111 11111
lowQualScore : 4 111111 5555555555555555555555 888888 55 77777777777777777777 00 4 4 0 777 4 4 4 55 8888 1 7777777777 4 777 22 1 1 0 66 0 1 66 00 4 4 0 77777 6 4 777 2 4 4 4 2 77 777 4 66 88888888 5 77 5 1 3 4444 6 3333 0 0 55555555 5 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 444 1 88 3 6 6 6 1 1 6 6 3 6 4444 111 3 8 99 3 777777 0 22 0 3 999999 0 1 99999999 3 1111111111 0 3 11 1 8 0 3 1 888888 1 000 1 44 444 0 999999 666 5 5 3 5 3 2222 5 0 22 1 0 1 0 44444 0 3 333 666666 6 4 44444 5 2 2 11 555555555 66 11 22222 0 1 3 1
lowQualScore : . ...... ...................... ...... .. .................... .. . . . ... . . . .. .... . .......... . ... .. . . . .. . . .. .. . . . ..... . . ... . . . . . .. ... . .. ........ . .. . . . .... . .... . . ........ . ............................................................................................................................... ... . .. . . . . . . . . . . .... ... . . .. . ...... . .. . . ...... . . ........ . .......... . . .. . . . . . ...... . ... . .. ... . ...... ... . . . . . .... . . .. . . . . ..... . . ... ...... . . ..... . . . .. ......... .. .. ..... . . . .
lowQualScore : 0 555555 5555555555555555555555 555555 55 88888888888888888888 66 4 6 9 888 0 0 0 55 5555 9 2222222222 4 888 88 4 4 3 11 8 8 11 66 4 4 1 11111 9 4 888 2 4 4 4 2 77 888 4 11 11111111 0 99 7 7 5 2222 7 7777 7 3 22222222 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 4 88 5 7 7 7 0 0 7 7 7 7 2222 777 7 0 00 0 222222 8 33 7 3 000000 2 0 00000000 2 4444444444 8 2 00 4 0 8 2 0 888888 0 888 0 55 888 0 222222 999 9 0 4 0 6 1111 7 7 66 7 6 7 4 33333 1 0 777 444444 6 0 33333 7 7 4 44 333333333 99 44 55555 1 4 0 4
consensus : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA-CAGGATGTTTTATCTATA-AA--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAA-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAATT-ATTT---GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATACTCTGGGAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-AC--AGGTTTCTGAGGAATTCGTGA-AAAAAAATGTAAAAACGAAAATGACATA-ATCC-----TAATCAATTTTTAAGACATTTGTTTTAGATNTTCCTGAAAACGTA--------AACGTAAATGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTATATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATNTG------CTTTTCATNTCCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCGCTTTCTNGCTGTTTTNT--NAAT-CGCGTGTAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTTGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TTA--TATA--TATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAATGNTATAGTAATACTGTA
Reference ( family-951 ) : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA-CAGGATGTTTTATCTATA-AA--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAA-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAATT-ATTT---GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATACTCTGGGAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-AC--AGGTTTCTGAGGAATTCGTGAGAAAAAAATGTAAAAACGAAAATGACATA-ATCCA--TCTAATCAATTTTTAAGACATTTGTTTTAGATNTTCCTGAAAACGTA--------AACGTAAATGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTATATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATNTG------CTTTTCATNTCCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCGCTTTCTNGCTGTTTCGT--NAAT-CGCGTGTAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTTGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TTA--TATA--TATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAATGNTATAGTAATACTGTA
gi|1 : GAAAATATTCACATTATAAATCA-TTA------CTTC----------------------CATCT------A--AAA-CAGGATGTTTTATCTATATAA--CAGGATGTT-T-ATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAT-A-A-A--TCAGATGAGCTTGGTGACATT----GCAATACACATTGAAGTATCACGCATCCATGCACGCACCCATGTACGCGCATACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGTTGTTGATAAAAATATGTACGTGACTCAAATCTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTAAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-AAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTCCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-TCTTTAGAAAGTCGTTTACATCCATGTAAGCATCAGTATGAAATATCAGGTTTAATTTATTTAGTGATTCATTAATTTTATGTAATCTTAACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGTGTAGCAAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAATTATTCTGGGAATTTGAA---AAAAAAAATCAGTTACGCTTGGTGACGTTGCAATATACATTCAAGTGTGTAT-TGCCACCCA-TA-AAAATAAAATACAATACAATATCAAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAATTTCACTGC-AAAAAGAAAC-ACCCAGGTTTCTGAGGAATTCGTGA-AAAAAAATATAAAAACGAAAATGACATA-ATCC-----TAATCAATTTTTAAAACATTTCTTTTAGATATTCTTGAAAATGTA--------AACGTAAA-GAT------AGTAGATATGTACATTCATGGC-GGTTATA--CTATGCTGGATAG-GAATAGGAGTGGGGGAAATACCATTTTATAAAGAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATATCCGGTCTAGTTGCAAATATACTTATTATAAACCAACCAACCGCTTTCTGGCTGTTTTGT--CTAT-CGCGTGTAA------TTTTTTATTGCTGTTTCTTTTTATTTCT-AAT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGTTTGTATGATATAGCTTTCAACAGTTATAAAAAGATTCTGTTTGGTCTCATCTGAACAATCCTCCAG-----TAACACTTGGTAATTTTCGGT------TATCTCCTATAAAAAAAAGTCGCAAAG-----C-TGATTGGATGCACGGAAGATTACGGACCGTTACGTTA--TATA--TATATGTACTCCGTCTACGACAACAGCGTCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGGAATACTATAGTTATACTGTA
gi|10 : ATTGCTGTTCCTTTTTAATTCA-ATT-TTTCAACACATT-ATAACATGGTTCACAAATTGTAT----TTA-CAGCATG----ATATAGTTTTCAACAGTTATAAAATTATTTTGTGAGGTATCATCTGAACAACCCTCAAG-----AAACACTTGTTTGTTTTCGGTCACTAGTATCTCTGATAACAAAATGTCGCTAAG-----C-TGATAGGATGCACGGAAAATTCCAAACCGTTTC-TTAAATATG--TATACATACACCATCTGCGACAACAGCGTCCACA-----TAGGTTCAGATTCATTTCTTCTGGTTCTGTTGTACTAGCGAATGGTACAGTA
gi|11 : AAAATATTTACATTACAAATTA-TCA------CTCC-----------------------ATCT------ATAAAA-C-------TTTA-----A-AA--CAGGATGGT-TTGTTTATAAAA-CAGGATGTTATTATCGGATTCG---TTTCTGAAATATTCTGAGAA--------------A--TCAGATAAGCTTGGTGACCAT----GCAATATACATTCAAGTACCATGCATCCATGCACGCATCAATACGCGCACATGCTTAAATTATGATTAAAGATA---ATAATATATCATGGAAGTTAAGAATCATTGTGACATTGCATGAATATGTTGTTGATAACAA-AAACACGTTAATCAAA----AAAATAACAATACGTA----TATGCTAAATGTAAATACG--AGAAAA-AAA-CATATATCA--T-----ATGTATT-CAAAATTATG---TAAGTTTTGTTATC-TAAA-ATA-AATG--ATA--------TGT-AT--ACAATATGttgtaatttataaagttttaaaatgcaacaagtgcctcaattttttcatacctagttaaaaaactgggaggcccttaagggcaagggccttcctgggtctcaaagcagctacaggcc
gi|12 : gaTTTATTGCTGTTTCTTTTTATTTCA-A-T-TTTCAACATATT-ACA---TGCTTCACAAATTGTAT----TTG-CAACATGTATGGTATAGTTTGCAACAGTTATAAAACTATTTTGTTTGGTTTCATCTGAACAGCCCTACAG-----TAACATCCGTTTGTTTTCGGT------TATCTTCGATAACAAAATGTCGCAAAG-----C-TGATCGGATGCACGGAATATTCCGAACCGT--------------------G---------TGCGACAACAGTGTCCACA-----TAGGTTCAGATTCATT
gi|13 : GTA--------AA--TAAGCGGG------AGT-GCTATGTACATTCATGGCCAGTTATATACTTTATTGGATAG-GAATGGAAGTTGGGACAATACCATTTTATATAGAGTAGGTTTTGGGAAACCAAATTTGTTTTGTTTTTTTATTTCCGGCCTAGTTGCGAATCCACTTATTATA--TCAACCAATCGCTTTCTTACTGTTTTCTTAAAAT-TGCGTCCAACAAAG-TTTTTTTCTCTTGTTTCTTTTTACTT---AGTATTTCAA---ATTAACAACaatagtaatacagttttataatttatttagttttaaaatgcaacaaggatatttaatatagtgcctcaaatttgtttcgtacctagcccgaaaaatagggggataccggctttcctgggtctcagagtagctacgggcct
gi|14 : tAAAATATTCACATTATAAAGCA-TTA------CTCC----------------------CATCT------A--AAAACAGGATGTTTTATCTATATAA--CAGGATGTT-TTATTTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGTGAATTTGAAAAA-A-A-A--TCAGAATAGCTTTGTGACATT----GCAATGCACATTCAAGTATCACGCATCCATGCACGCACCCATGTATGCACATGCT----------TTACA-ATA---ATAATATATCAC-GAAGTTAAGAATCATTGCAGC
gi|15 : TGTTTCCTTTTATTTCA-ATT-TTTCAGC-CGTT-ACAACATGTTTCACAAATTGTATACTATTGGCAGCATGTAT--TATAGCTTTCAACAGTTATGAAACAAAATTGTTCGGTTTCATCTGAACAGCCCTCTAGAAGCCTAGCATTCGCTTGATTTCGGT------TATCTCCGACAACAAAACGTCGCGAAACTGATC-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TAA--TAT
gi|16 : A--TATA--TATACACACTCCGTCTGCGGCAACAACGTCCACA-----TAGGTTTAGATTCATTTCTTGTGGTTCTGTTGTAATAGGGAATGTTATCATAATGCAGTAcagtacatt
gi|17 : GAAAATATTCACATTACAAAAAAATCA------CTCCAATCTGTTAACACAAAATGTTTTATCTGAAAAAA--AAA-CGGGATGTTTTATCTTTA-AAAACAGGATGTTCTTATCTATAA---CTGGGTGTTTTTATCGGATCCG---TTT--AAAGTATTCTTGGAATTTGAAAAA-T-A-A--TCAGATGAGATTGGTGACATT----GCAATACACATTCAAGTATCTTGCATACATGCACttataatttgtttagttttaaaatgcaatatggatgttcaatatagtgtctcaaaatttgttcgtacctagcacgaaaaacagggagtgaccggcttccctgggcctcagagtagctacaggcctgcg
gi|18 : TA--TATA--TATACGTAATTCTCCTGCAACAACAGCGTCTATA-----GGTTTTCAGATTCATTTCCTGTGATTCCGTTGTACTGAGGAATGATATGGCGATACAGTatg
gi|19 : GAAAATATTCACATTATCACT---TTGGGGAGTCTCC----------------------CATCT------A--AAA-AA-----TTTTA-----A-AA--CAGGAAGAT-TTATCTATAATA-CAG--TATTT-----------G---TTTCTAAAATATTCTGGGAATTGGAAAAA-A-A-A--TCAGATAAGCGTGGTGACATT----GCAATACACATTCATGTATCACACATCCATGCATGCA--CATGCCCAT-CATGATTAA-------TTAAG-ATA---ATAATATATCtttataatttatttactttaaaatgaaacacatatttttcgtactaatagcccgaaaaacagggaggccggcacagggaggcatcggcctcccgctgtgcctcagagtagctacgggcct
gi|2 : ttgGAATTTGAAAAAGA-A-A--TCAGATAAACTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGGTGTTGATCAAAATACATACGTGACTCAAATCTGAAAATAATAATACGTATAATTATGCTAAATGTAAATACGAAAA--AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--ATTAATAT-TTTTTTTATAAACAATATGTTAAGATGTGTTTATTTCTAATAAT----AGTAATCTCCACGTCCGGATAGCTCACATATCTAAGC-GA----CTTTAGAAAGTCGTTTATATCCATGTAAGCATCAGTATGAAATATTAAGTTTAATT-A-TT---GATGCATTAATTGTATGTAAACCTTACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGCAAATCC
gi|2 : TTTCCTAAATACTCTGGGAATTTGAA---AATAAA--TCAGTTAAGCTTGGTAACATTGCAATATACATTCAAGTGTGTAT-TACTACCCA-TA-GAAATAGAATAAGATACAATATTGAGATGTTGTGAGGTAGAAATA-ATGA-TACAATCATTCGCCATGTT-AAAAATGTTTTTGTTTT----TTTTCTGACTTCACTGCAAAAAA-AAACAAC--AGGTGTTTGAGGAATTTGTGAT--AATAATGTAAAAATGAAAATGACATA-ATC-----GTAATCAATTTTTAAAACATTTGTTTTAGATATTCTTGAAAACGTA--------AA-GTAAA-GAT------AGTAAATATGTACATTCATGG-CAGTTATA--CTATTTTGGAAAACAAATGGGAGTGGGGAAAATACCATTTTATATAAAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATGTCCGATCTAGTTGCAAATCCACATATTATA----AACCAACCGCTATCTGGCTGTTTTGT--TAAT-CGCGTGTAA------TCTTTAATTGCTGTTTCTTTTTCTTTCA-AGT-TTTCAACACATT-ACAACATG-TTCAAAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTGAACAGTTATAAAAAGATTTTACTTGGTCTCAACTGAACAATCCTCCAG-----TAACACTCGGTAATGTTCGAT------TATCTCCGGTAACAAAA-GTCACAAAG-----CTTTTTTGAATGCACG--------------GTTACGTTA--TACAATTATATATACTCCACCTGCGACAACAGCATCCACA-----GAGGTTCAGGTTAGATTCTTGCGATTCTGTTTTACTAGGGA-----ACAGTAACACTGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcctaaatactctgggaatttgaaaataaatcagttaagcttggtaacattgcaatatacattcaagtgtgtattactacccatagaaatagaataagatacaatattgagatgttgtgaggtagaaataatgatacaatcattcgccatgttaaaaatgtttttgttttttttctgacttcactgcaaaaaaaaacaacaggtgtttgaggaatttgtgataataatgtaaaaatgaaaatgacataatcgtaatcaatttttaaaacatttgttttagatattcttgaaaacgtaaagtaaagatagtaaatatgtacattcatggcagttatactattttggaaaacaaatgggagtggggaaaataccattttatataaagtagattttgggcaaccaaatgtgcttttcatgtccgatctagttgcaaatccacatattataaaccaaccgctatctggctgttttgttaatcgcgtgtaatctttaattgctgtttctttttctttcaagttttcaacacattacaacatgttcaaaaattgtatttacagcatgtatgatatagctttgaacagttataaaaagattttacttggtctcaactgaacaatcctccagtaacactcggtaatgttcgattatctccggtaacaaaagtcacaaagcttttttgaatgcacggttacgttatacaattatatatactccacctgcgacaacagcatccacagaggttcaggttagattcttgcgattctgttttactagggaacagtaacactgtattacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|20 : gaatttgaaaaagaaatcagataaacttggtgacattgcaatacacattcaagtatcacgcatccatgcacgcacccatgcacgcacatactttacaataataatatatcacggaagttaagaatcatggcagcactgtatgtatatggtgttgatcaaaatacatacgtgactcaaatctgaaaataataatacgtataattatgctaaatgtaaatacgaaaaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctaaaatagaagctatagcatttgtatacaatatgttctatgtttgtattttaatatattaatattttttttataaacaatatgttaagatgtgtttatttctaataatagtaatctccacgtccggatagctcacatatctaagcgactttagaaagtcgtttatatccatgtaagcatcagtatgaaatattaagtttaattattgatgcattaattgtatgtaaaccttactacataatcatgttttgattatccgtccaatattacaaatagtttagcaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGATAAGCTTGGCGACATTGCAATATACATTTATGTATGTAT-CACCACCCA-TC-AAAATAAAATTAGATACACAATCGAGATGTAGTAAAGCGGAAATACACAACTACT---ATTCGCCCTATT-AAAAATAGGGTTGATGT----TT---TAACTTCACTGC-AAAAA-Attacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|22 : GAAAGTATTCACATTCTAAATCA-TTA------CTCC----------------------AATCT------A--AAA-caaaaa
gi|3 : gAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAAACAGGATGTTTTATCTATATAG--CAAGATGTT-TTATCTATAAAAACAGGATGTTTTCCTAGAATCCG---TTTCTAAAGTGTTCTTGGAATTTGAAAAA-A-ATA--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCATGCACCCATGTACGCACATGCT----------TTACA-ATA---ATTATATATCACGGAAGTTATGAATCAGGGCAGCGCTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCCAAACTGAAAATAACAATACGTATAACTATGCTAAATGAAAATACG--AG--AA-AAAACATATATCAGGTTGACAACGTAAT-CAAAAGTGTG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATAATAAGATGTGTTTGTTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-GGTCTTTAGAAAGT---TTATATCCATGTAATCATCCGTATGAAATATCAGGTTTAATTTATTTAGTGATGCATTAATTTTATGTAAACTAAACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGCGTAGCAAATC-CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTTTAAAATACTCTGGAAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TG-AAAATGAAATAAAATACAATATCAAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCAATGTA-AAAAATGTTGTTGATGTTCAATT---TTTTTTCACTGC-AAAAT-ACAT-CC--AGGTTTCTGAGGAATTCGacg
gi|4 : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA---------------------A--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTAATCAAATCAG---TT--------ATTCTTTGAATTTGAAAAA-A-A-AAATCAGATAAGCTTGGTGACATTCAGTGCAATACACATTCGAGTATCGTGCATCCATGCATGCACCTATGCACGCACATGCT----------TTACA-ATAATAATAATATATCAGGGAAGTTAAGAATCGTGACAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTTAAAACTGAAAATAACAATTAGTACAATTATGCTTAATGTAAATACT--AGA-AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TGAA-ATA-GAAGCTATAGCAT---T------------------------------TGTTCGCATTTTAATATAAAAAAATAA-ATTTCATATCAACAATATGTAAAGATGTGTTTATTTCTAATATG----AGTAAACTCCATGTCCGGCCAGCCCACATATCTAAAC-GA----CTTTAGAAAGTCGTTTATATCCGTGTAAGCATCAGTATGAAATATTAGGTTTGATT-A-TT---GATACATTAATTTTTTTTAAACTTAACTACTACAGTCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGAAAATCC
gi|4 : tgTTTCTAAAATACTCTGGGAATTTGAAGAAAAAAAAA-TCAGTTAAGCTTGATGACATTGCAGTATACATTGAAGTGTGTTT-TGCCACCTA-TA-AAAACAAAATTAGATACAAAATCGAGATGTAGTGAGGCTGAAATA-ATGA-TACTGTCATTCGCCATGTTAAAAAATGTTGTTGATGT----TT---TAACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttctaaaatactctgggaatttgaagaaaaaaaaatcagttaagcttgatgacattgcagtatacattgaagtgtgttttgccacctataaaaacaaaattagatacaaaatcgagatgtagtgaggctgaaataatgatactgtcattcgccatgttaaaaaatgttgttgatgttttaact
gi|5 : tggaaaatattcacattataaatcattactcccatctaaaaacaggatgttttatctataaaaacaggatgttttaatcaaatcagttattctttgaatttgaaaaaaaaaatcagataagcttggtgacattcagtgcaatacacattcgagtatcgtgcatccatgcatgcacctatgcacgcacatgctttacaataataataatatatcagggaagttaagaatcgtgacagcactgcatgtatatgttgttgataaaaatatatacgtgacttaaaactgaaaataacaattagtacaattatgcttaatgtaaatactagaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctgaaatagaagctatagcatttgttcgcattttaatataaaaaaataaatttcatatcaacaatatgtaaagatgtgtttatttctaatatgagtaaactccatgtccggccagcccacatatctaaacgactttagaaagtcgtttatatccgtgtaagcatcagtatgaaatattaggtttgattattgatacattaattttttttaaacttaactactacagtcatgttttgattatccgtccaatattacaaatagtttagaaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCAAAACTGAATATAACACTACGTATA-TT---CTAAATGTAAATACG--AG--AA-AAA-CATATATTA---T----ATGT-AT-TAAAATTATG---TAAGTTTGGTTATC-TAAA-ATA-AATGCTAT--C-T---TTG-------CAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAACATAA-ATTTTATATTAACAATATGTAAAGATGTGCTTATTTTTTATATG----AATAAATTCAACGTCTGGACAGCCCATATATCTAAGCGGG-G-CCTTCAGAAAGTCGATTATATCCATGTATGCGTCAGTAAGAAATATTAGCTTTAA-T-ATTT---GATGCATT-ATTTTATGTAAACTTAACTATTACATTCATGTTTTGATTATTGGTTCAATATTATAAATAGTGTAACAATTCC
gi|5 : AGTTTCTAAAATATTCTGGGAATTTGAA---AATAAAA-TCACATAAGCTTGGTGACATTGCAAT-----TTTA-GTATGTAAACACCACCCAACATAAAATAAAGTTGGATATAATAACGAGATGTAATAAGGCCGAAATA-AAGA-TATTAACAT----AA-----AAAAATGTTGCTGATGT----TT---TAA------------------A--AC--AGGGCTCTGAGGAATTTTAGAGAAAAAAATGTAAAAATGAAAATGACATAGATCCGATTCTAATTTGTTTTTAAGACATTTGTTTTAGATTTTCCTGAAAACGTT--------AACGTAAAT-AT------ACTATATATGTACATTCATGGCCAGTTATA--CTATATTTGATAG-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttctaaaatattctgggaatttgaaaataaaatcacataagcttggtgacattgcaattttagtatgtaaacaccacccaacataaaataaagttggatataataacgagatgtaataaggccgaaataaagatattaacataaaaaaatgttgctgatgttttaaaacagggctctgaggaattttagagaaaaaaatgtaaaaatgaaaatgacatagatccgattctaatttgtttttaagacatttgttttagattttcctgaaaacgttaacgtaaatatactatatatgtacattcatggccagttatactatatttgatag
gi|6 : ctcaaaactgaatataacactacgtatattctaaatgtaaatacgagaaaaacatatattatatgtattaaaattatgtaagtttggttatctaaaataaatgctatctttgcaatatgttctatgtttgtattttaatataaacataaattttatattaacaatatgtaaagatgtgcttattttttatatgaataaattcaacgtctggacagcccatatatctaagcggggccttcagaaagtcgattatatccatgtatgcgtcagtaagaaatattagctttaatatttgatgcattattttatgtaaacttaactattacattcatgttttgattattggttcaatattataaatagtgtaacaattccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAGACATTTATTTTAGATTTTCCTGAAAACAAACCAAGACCAATGTAAATTATTGCTGGAGTAGATATGTACATCCATTATCAGATATA--CTTTATTGGATAG-GAATGGGAGTGGGCCAC-TACCATTTTATATAGAGTAGGTTTTTGGCAACCAAATTTG------TATTTCATTTGCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCACTTTCTCATTGTTTCTT--AAATACGCGTGCAACAAAGATTTTTTATTGAAGTTTCTTTTTATTTAA-AAA-TCTCAACTTATT-ACAACATATTTCACAAATTGCAT----TTT-CAGCATGTATGATATAGCTTTCAACAGTAATAAAAAGA-TTTGTTTTGTCTCA----A----------AG-----TAACAC-------------------------TCTGATAACAAAAAGTCGCTAAA-----C-TGAATGGATGCACAGAAAATTCCAAAC--------TA--T-------TACGTACTCGGTCTGCGACAAAAGCATTCACATAATTGA-GTTCAGATTCATTTC--GTGGTTACATTGTAATAGGGAATGCTATAATAATAC
gi|7 : atatattaaagagtaacaaattctaaggctgcgttcagttcaacacCA-TCA------CTCC----------------------CATCTGTA---A--AAG-CAGCATGTTTTATCTATA-AAA-CTGGATGTT-TTATTTATAAAAACAGGATGTTTTTATCGGATCCGCTGTTTCTTAAATATTCTGGAAATTTGGAAAA-ATA-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAATCATCACGTGTTCATGTACGCATCCATGCACGCACATGCT----------TT-----TC---GTGA---ATCA---AAACTGAAAAT------AACA--------ATATGTTTATGCTAA------ATACG------AAAA---AAAACACGAAACCATATAATTAT----AATACATATA--------AA-AAT-TATGTAT--GTTT-----TGTTATACAA---TATGTTCTATG-TTTG-TATT-T-TA-ATACGA--CTTTTTTAT---TTAT-ATTAACAATATGTTAAGATTGTTTATTGTTTATGTTTTAGTAagaacatataatacaaaatttgttttgttttaaaatgtgacaaggatttaaatatagtgcctcaaattttgtttgtacctagtccgaaaaacctgggcctcagattagctatgggcctg
gi|7 : CGTGAATCAAAACTGAAAATAACAATATGT----TTATGCTAAAT------ACG--AA--AA-AAA---------------ACA--------CGAAACCATA---TA------ATTATAATACATATA-AAAATTAT-GTATGTTTTGTTAT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAC--GACTTTTTTATTT-ATATTAACAATATGTTAAGAT-TGTTTATTGTT--TATGTTTTAGTAACCTCCACATCCTGACAGCCCACATGTCTAAGT-GGAG-CCTTCAGGAAGTCGTTGCTATCCCTGTATGCGTCTGTACGAAATATAAGCTTTAATT-ATT----GATGCATTAATTTTATATAAAATTAACTACTACAATCATGTTTTGATTATCCGTCCAATAT---AAATAGAGTAACAGAacctccacatcctgacagcccacatgtctaagtggagccttcaggaagtcgttgctatccctgtatgcgtctgtacgaaatataagctttaattattgatgcattaattttatataaaattaactactacaatcatgttttgattatccgtccaatataaatagagtaacaga
gi|8 : catcactcccatctgtaaaagcagcatgttttatctataaaactggatgttttatttataaaaacaggatgtttttatcggatccgctgtttcttaaatattctggaaatttggaaaaataatcagataagcttggtgacattgcaatacacattcaatcatcacgtgttcatgtacgcatccatgcacgcacatgcttttGAAAATATTCACATTATGAATCA-TAA------CTCC----------------------CGTCT------A--AAA---------------------A--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAT-A-A-A--TCAGATAAGATTGATGACATT----GCAATACACATTCAGGTATCACGCATTCATGCA-----------A-GCACATGCT----------TTACA-ATA---ATAATATATCACAGAAGTTACGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAA-------TAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AATAAA-CATATATCAGGTTGACAACGTAAT-CAAAGTTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAATAT---TTGT-AT--ATAATATGT--------TCTA-TGTTTGTTTTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTAT
gi|9 : tgGCGTGTAA------TTTTAAATTGCTGTTTCTTTTTTTTTTTTAAT-TTTCAACACATT-GCCACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGGTATAGCTATCAACAGTTATAAAAATATCTTGTTAGGTCTCATCTGAACAATCTTCCAG-----TAGCACTCGGTAACTTTCGGT------TATCTCCGATAACAAAAAGTCGCGAGG-----C-TGATTGGATGCACGGAAGATTCCGAA-CGTTAC-GT---TATA--TATATGTACTTCGCCTACGACAACAGCATCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGAAAGATTATAATAATACTGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCTAGCCCGAAAAACAGGGAGTGTGGTGCCTCAGAGTAACTATGGGCCTGATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333333333333333 111111 33333333333333333333 11 2222222222 11 11111111 1111 2222 22222222 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111 111 111111 22 333333 22222222 1 3333333333 11 222222 222 111 1 444444 1111 11111 111111 11111 111111111 11111
lowQualScore : 4 111111 5555555555555555555555 888888 55 77777777777777777777 00 4 4 0 777 4 4 4 55 8888 1 7777777777 4 777 22 1 1 0 66 0 1 66 00 4 4 0 77777 6 4 777 2 4 4 4 2 77 777 4 66 88888888 5 77 5 1 3 4444 6 3333 0 0 55555555 5 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 444 1 88 3 6 6 6 1 1 6 6 3 6 4444 111 3 8 99 3 777777 0 00 0 888888 0 1 99999999 3 1111111111 0 3 11 1 8 0 3 1 888888 1 000 1 1 444 0 999999 666 5 5 3 5 3 2222 5 0 22 1 0 1 0 44444 0 3 333 666666 6 4 44444 5 2 2 11 555555555 66 11 22222 0 1 3 1
lowQualScore : . ...... ...................... ...... .. .................... .. . . . ... . . . .. .... . .......... . ... .. . . . .. . . .. .. . . . ..... . . ... . . . . . .. ... . .. ........ . .. . . . .... . .... . . ........ . ............................................................................................................................... ... . .. . . . . . . . . . . .... ... . . .. . ...... . .. . ...... . . ........ . .......... . . .. . . . . . ...... . ... . . ... . ...... ... . . . . . .... . . .. . . . . ..... . . ... ...... . . ..... . . . .. ......... .. .. ..... . . . .
lowQualScore : 0 555555 5555555555555555555555 555555 55 88888888888888888888 66 4 6 9 888 0 0 0 55 5555 9 2222222222 4 888 88 4 4 3 11 8 8 11 66 4 4 1 11111 9 4 888 2 4 4 4 2 77 888 4 11 11111111 0 99 7 7 5 2222 7 7777 7 3 22222222 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 4 88 5 7 7 7 0 0 7 7 7 7 2222 777 7 0 00 0 222222 8 77 7 333333 2 0 00000000 2 4444444444 8 2 00 4 0 8 2 0 888888 0 888 0 0 888 0 222222 999 9 0 4 0 6 1111 7 7 66 7 6 7 4 33333 1 0 777 444444 6 0 33333 7 7 4 44 333333333 99 44 55555 1 4 0 4
consensus : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA-CAGGATGTTTTATCTATA-AA--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAA-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAATT-ATTT---GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATACTCTGGGAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-AC--AGGTTTCTGAGGAATTCGTGA-AAAAAAATGTAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAGACATTTGTTTTAGATNTTCCTGAAAACGTA--------AACGTAAATGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTATATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATNTG------CTTTTCATNTCCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCGCTTTCTNGCTGTTTTNT--NAAT-CGCGTGTAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTTGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TTA--TATA--TATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAATGNTATAGTAATACTGTA
Reference ( family-951 ) : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA-CAGGATGTTTTATCTATA-AA--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAA-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAATT-ATTT---GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATACTCTGGGAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-AC--AGGTTTCTGAGGAATTCGTGA-AAAAAAATGTAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAGACATTTGTTTTAGATNTTCCTGAAAACGTA--------AACGTAAATGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTATATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATNTG------CTTTTCATNTCCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCGCTTTCTNGCTGTTTTNT--NAAT-CGCGTGTAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTTGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TTA--TATA--TATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAATGNTATAGTAATACTGTA
gi|1 : GAAAATATTCACATTATAAATCA-TTA------CTTC----------------------CATCT------A--AAA-CAGGATGTTTTATCTATATAA--CAGGATGTT-T-ATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAT-A-A-A--TCAGATGAGCTTGGTGACATT----GCAATACACATTGAAGTATCACGCATCCATGCACGCACCCATGTACGCGCATACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGTTGTTGATAAAAATATGTACGTGACTCAAATCTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTAAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-AAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTCCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-TCTTTAGAAAGTCGTTTACATCCATGTAAGCATCAGTATGAAATATCAGGTTTAATTTATTTAGTGATTCATTAATTTTATGTAATCTTAACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGTGTAGCAAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAATTATTCTGGGAATTTGAA---AAAAAAAATCAGTTACGCTTGGTGACGTTGCAATATACATTCAAGTGTGTAT-TGCCACCCA-TA-AAAATAAAATACAATACAATATCAAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAATTTCACTGC-AAAAAGAAAC-ACCCAGGTTTCTGAGGAATTCGTGA-AAAAAAATATAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAAACATTTCTTTTAGATATTCTTGAAAATGTA--------AACGTAAA-GAT------AGTAGATATGTACATTCATGGC-GGTTATA--CTATGCTGGATAG-GAATAGGAGTGGGGGAAATACCATTTTATAAAGAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATATCCGGTCTAGTTGCAAATATACTTATTATAAACCAACCAACCGCTTTCTGGCTGTTTTGT--CTAT-CGCGTGTAA------TTTTTTATTGCTGTTTCTTTTTATTTCT-AAT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGTTTGTATGATATAGCTTTCAACAGTTATAAAAAGATTCTGTTTGGTCTCATCTGAACAATCCTCCAG-----TAACACTTGGTAATTTTCGGT------TATCTCCTATAAAAAAAAGTCGCAAAG-----C-TGATTGGATGCACGGAAGATTACGGACCGTTACGTTA--TATA--TATATGTACTCCGTCTACGACAACAGCGTCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGGAATACTATAGTTATACTGTA
gi|10 : ATTGCTGTTCCTTTTTAATTCA-ATT-TTTCAACACATT-ATAACATGGTTCACAAATTGTAT----TTA-CAGCATG----ATATAGTTTTCAACAGTTATAAAATTATTTTGTGAGGTATCATCTGAACAACCCTCAAG-----AAACACTTGTTTGTTTTCGGTCACTAGTATCTCTGATAACAAAATGTCGCTAAG-----C-TGATAGGATGCACGGAAAATTCCAAACCGTTTC-TTAAATATG--TATACATACACCATCTGCGACAACAGCGTCCACA-----TAGGTTCAGATTCATTTCTTCTGGTTCTGTTGTACTAGCGAATGGTACAGTA
gi|11 : AAAATATTTACATTACAAATTA-TCA------CTCC-----------------------ATCT------ATAAAA-C-------TTTA-----A-AA--CAGGATGGT-TTGTTTATAAAA-CAGGATGTTATTATCGGATTCG---TTTCTGAAATATTCTGAGAA--------------A--TCAGATAAGCTTGGTGACCAT----GCAATATACATTCAAGTACCATGCATCCATGCACGCATCAATACGCGCACATGCTTAAATTATGATTAAAGATA---ATAATATATCATGGAAGTTAAGAATCATTGTGACATTGCATGAATATGTTGTTGATAACAA-AAACACGTTAATCAAA----AAAATAACAATACGTA----TATGCTAAATGTAAATACG--AGAAAA-AAA-CATATATCA--T-----ATGTATT-CAAAATTATG---TAAGTTTTGTTATC-TAAA-ATA-AATG--ATA--------TGT-AT--ACAATATGttgtaatttataaagttttaaaatgcaacaagtgcctcaattttttcatacctagttaaaaaactgggaggcccttaagggcaagggccttcctgggtctcaaagcagctacaggcc
gi|12 : gaTTTATTGCTGTTTCTTTTTATTTCA-A-T-TTTCAACATATT-ACA---TGCTTCACAAATTGTAT----TTG-CAACATGTATGGTATAGTTTGCAACAGTTATAAAACTATTTTGTTTGGTTTCATCTGAACAGCCCTACAG-----TAACATCCGTTTGTTTTCGGT------TATCTTCGATAACAAAATGTCGCAAAG-----C-TGATCGGATGCACGGAATATTCCGAACCGT--------------------G---------TGCGACAACAGTGTCCACA-----TAGGTTCAGATTCATT
gi|13 : GTA--------AA--TAAGCGGG------AGT-GCTATGTACATTCATGGCCAGTTATATACTTTATTGGATAG-GAATGGAAGTTGGGACAATACCATTTTATATAGAGTAGGTTTTGGGAAACCAAATTTGTTTTGTTTTTTTATTTCCGGCCTAGTTGCGAATCCACTTATTATA--TCAACCAATCGCTTTCTTACTGTTTTCTTAAAAT-TGCGTCCAACAAAG-TTTTTTTCTCTTGTTTCTTTTTACTT---AGTATTTCAA---ATTAACAACaatagtaatacagttttataatttatttagttttaaaatgcaacaaggatatttaatatagtgcctcaaatttgtttcgtacctagcccgaaaaatagggggataccggctttcctgggtctcagagtagctacgggcct
gi|14 : tAAAATATTCACATTATAAAGCA-TTA------CTCC----------------------CATCT------A--AAAACAGGATGTTTTATCTATATAA--CAGGATGTT-TTATTTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGTGAATTTGAAAAA-A-A-A--TCAGAATAGCTTTGTGACATT----GCAATGCACATTCAAGTATCACGCATCCATGCACGCACCCATGTATGCACATGCT----------TTACA-ATA---ATAATATATCAC-GAAGTTAAGAATCATTGCAGC
gi|15 : TGTTTCCTTTTATTTCA-ATT-TTTCAGC-CGTT-ACAACATGTTTCACAAATTGTATACTATTGGCAGCATGTAT--TATAGCTTTCAACAGTTATGAAACAAAATTGTTCGGTTTCATCTGAACAGCCCTCTAGAAGCCTAGCATTCGCTTGATTTCGGT------TATCTCCGACAACAAAACGTCGCGAAACTGATC-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TAA--TAT
gi|16 : A--TATA--TATACACACTCCGTCTGCGGCAACAACGTCCACA-----TAGGTTTAGATTCATTTCTTGTGGTTCTGTTGTAATAGGGAATGTTATCATAATGCAGTAcagtacatt
gi|17 : GAAAATATTCACATTACAAAAAAATCA------CTCCAATCTGTTAACACAAAATGTTTTATCTGAAAAAA--AAA-CGGGATGTTTTATCTTTA-AAAACAGGATGTTCTTATCTATAA---CTGGGTGTTTTTATCGGATCCG---TTT--AAAGTATTCTTGGAATTTGAAAAA-T-A-A--TCAGATGAGATTGGTGACATT----GCAATACACATTCAAGTATCTTGCATACATGCACttataatttgtttagttttaaaatgcaatatggatgttcaatatagtgtctcaaaatttgttcgtacctagcacgaaaaacagggagtgaccggcttccctgggcctcagagtagctacaggcctgcg
gi|18 : TA--TATA--TATACGTAATTCTCCTGCAACAACAGCGTCTATA-----GGTTTTCAGATTCATTTCCTGTGATTCCGTTGTACTGAGGAATGATATGGCGATACAGTatg
gi|19 : GAAAATATTCACATTATCACT---TTGGGGAGTCTCC----------------------CATCT------A--AAA-AA-----TTTTA-----A-AA--CAGGAAGAT-TTATCTATAATA-CAG--TATTT-----------G---TTTCTAAAATATTCTGGGAATTGGAAAAA-A-A-A--TCAGATAAGCGTGGTGACATT----GCAATACACATTCATGTATCACACATCCATGCATGCA--CATGCCCAT-CATGATTAA-------TTAAG-ATA---ATAATATATCtttataatttatttactttaaaatgaaacacatatttttcgtactaatagcccgaaaaacagggaggccggcacagggaggcatcggcctcccgctgtgcctcagagtagctacgggcct
gi|2 : ttgGAATTTGAAAAAGA-A-A--TCAGATAAACTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGGTGTTGATCAAAATACATACGTGACTCAAATCTGAAAATAATAATACGTATAATTATGCTAAATGTAAATACGAAAA--AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--ATTAATAT-TTTTTTTATAAACAATATGTTAAGATGTGTTTATTTCTAATAAT----AGTAATCTCCACGTCCGGATAGCTCACATATCTAAGC-GA----CTTTAGAAAGTCGTTTATATCCATGTAAGCATCAGTATGAAATATTAAGTTTAATT-A-TT---GATGCATTAATTGTATGTAAACCTTACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGCAAATCC
gi|2 : TTTCCTAAATACTCTGGGAATTTGAA---AATAAA--TCAGTTAAGCTTGGTAACATTGCAATATACATTCAAGTGTGTAT-TACTACCCA-TA-GAAATAGAATAAGATACAATATTGAGATGTTGTGAGGTAGAAATA-ATGA-TACAATCATTCGCCATGTT-AAAAATGTTTTTGTTTT----TTTTCTGACTTCACTGCAAAAAA-AAACAAC--AGGTGTTTGAGGAATTTGTG--ATAATAATGTAAAAATGAAAATGACATA------ATCGTAATCAATTTTTAAAACATTTGTTTTAGATATTCTTGAAAACGTA--------AA-GTAAA-GAT------AGTAAATATGTACATTCATGG-CAGTTATA--CTATTTTGGAAAACAAATGGGAGTGGGGAAAATACCATTTTATATAAAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATGTCCGATCTAGTTGCAAATCCACATATTATA----AACCAACCGCTATCTGGCTGTTTTGT--TAAT-CGCGTGTAA------TCTTTAATTGCTGTTTCTTTTTCTTTCA-AGT-TTTCAACACATT-ACAACATG-TTCAAAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTGAACAGTTATAAAAAGATTTTACTTGGTCTCAACTGAACAATCCTCCAG-----TAACACTCGGTAATGTTCGAT------TATCTCCGGTAACAAAA-GTCACAAAG-----CTTTTTTGAATGCACG--------------GTTACGTTA--TACAATTATATATACTCCACCTGCGACAACAGCATCCACA-----GAGGTTCAGGTTAGATTCTTGCGATTCTGTTTTACTAGGGA-----ACAGTAACACTGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcctaaatactctgggaatttgaaaataaatcagttaagcttggtaacattgcaatatacattcaagtgtgtattactacccatagaaatagaataagatacaatattgagatgttgtgaggtagaaataatgatacaatcattcgccatgttaaaaatgtttttgttttttttctgacttcactgcaaaaaaaaacaacaggtgtttgaggaatttgtgataataatgtaaaaatgaaaatgacataatcgtaatcaatttttaaaacatttgttttagatattcttgaaaacgtaaagtaaagatagtaaatatgtacattcatggcagttatactattttggaaaacaaatgggagtggggaaaataccattttatataaagtagattttgggcaaccaaatgtgcttttcatgtccgatctagttgcaaatccacatattataaaccaaccgctatctggctgttttgttaatcgcgtgtaatctttaattgctgtttctttttctttcaagttttcaacacattacaacatgttcaaaaattgtatttacagcatgtatgatatagctttgaacagttataaaaagattttacttggtctcaactgaacaatcctccagtaacactcggtaatgttcgattatctccggtaacaaaagtcacaaagcttttttgaatgcacggttacgttatacaattatatatactccacctgcgacaacagcatccacagaggttcaggttagattcttgcgattctgttttactagggaacagtaacactgtattacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|20 : gaatttgaaaaagaaatcagataaacttggtgacattgcaatacacattcaagtatcacgcatccatgcacgcacccatgcacgcacatactttacaataataatatatcacggaagttaagaatcatggcagcactgtatgtatatggtgttgatcaaaatacatacgtgactcaaatctgaaaataataatacgtataattatgctaaatgtaaatacgaaaaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctaaaatagaagctatagcatttgtatacaatatgttctatgtttgtattttaatatattaatattttttttataaacaatatgttaagatgtgtttatttctaataatagtaatctccacgtccggatagctcacatatctaagcgactttagaaagtcgtttatatccatgtaagcatcagtatgaaatattaagtttaattattgatgcattaattgtatgtaaaccttactacataatcatgttttgattatccgtccaatattacaaatagtttagcaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGATAAGCTTGGCGACATTGCAATATACATTTATGTATGTAT-CACCACCCA-TC-AAAATAAAATTAGATACACAATCGAGATGTAGTAAAGCGGAAATACACAACTACT---ATTCGCCCTATT-AAAAATAGGGTTGATGT----TT---TAACTTCACTGC-AAAAA-Attacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|22 : GAAAGTATTCACATTCTAAATCA-TTA------CTCC----------------------AATCT------A--AAA-caaaaa
gi|3 : gAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAAACAGGATGTTTTATCTATATAG--CAAGATGTT-TTATCTATAAAAACAGGATGTTTTCCTAGAATCCG---TTTCTAAAGTGTTCTTGGAATTTGAAAAA-A-ATA--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCATGCACCCATGTACGCACATGCT----------TTACA-ATA---ATTATATATCACGGAAGTTATGAATCAGGGCAGCGCTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCCAAACTGAAAATAACAATACGTATAACTATGCTAAATGAAAATACG--AG--AA-AAAACATATATCAGGTTGACAACGTAAT-CAAAAGTGTG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATAATAAGATGTGTTTGTTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-GGTCTTTAGAAAGT---TTATATCCATGTAATCATCCGTATGAAATATCAGGTTTAATTTATTTAGTGATGCATTAATTTTATGTAAACTAAACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGCGTAGCAAATC-CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTTTAAAATACTCTGGAAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TG-AAAATGAAATAAAATACAATATCAAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCAATGTA-AAAAATGTTGTTGATGTTCAATT---TTTTTTCACTGC-AAAAT-ACAT-CC--AGGTTTCTGAGGAATTCGacg
gi|4 : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA---------------------A--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTAATCAAATCAG---TT--------ATTCTTTGAATTTGAAAAA-A-A-AAATCAGATAAGCTTGGTGACATTCAGTGCAATACACATTCGAGTATCGTGCATCCATGCATGCACCTATGCACGCACATGCT----------TTACA-ATAATAATAATATATCAGGGAAGTTAAGAATCGTGACAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTTAAAACTGAAAATAACAATTAGTACAATTATGCTTAATGTAAATACT--AGA-AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TGAA-ATA-GAAGCTATAGCAT---T------------------------------TGTTCGCATTTTAATATAAAAAAATAA-ATTTCATATCAACAATATGTAAAGATGTGTTTATTTCTAATATG----AGTAAACTCCATGTCCGGCCAGCCCACATATCTAAAC-GA----CTTTAGAAAGTCGTTTATATCCGTGTAAGCATCAGTATGAAATATTAGGTTTGATT-A-TT---GATACATTAATTTTTTTTAAACTTAACTACTACAGTCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGAAAATCC
gi|4 : tgTTTCTAAAATACTCTGGGAATTTGAAGAAAAAAAAA-TCAGTTAAGCTTGATGACATTGCAGTATACATTGAAGTGTGTTT-TGCCACCTA-TA-AAAACAAAATTAGATACAAAATCGAGATGTAGTGAGGCTGAAATA-ATGA-TACTGTCATTCGCCATGTTAAAAAATGTTGTTGATGT----TT---TAACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttctaaaatactctgggaatttgaagaaaaaaaaatcagttaagcttgatgacattgcagtatacattgaagtgtgttttgccacctataaaaacaaaattagatacaaaatcgagatgtagtgaggctgaaataatgatactgtcattcgccatgttaaaaaatgttgttgatgttttaact
gi|5 : tggaaaatattcacattataaatcattactcccatctaaaaacaggatgttttatctataaaaacaggatgttttaatcaaatcagttattctttgaatttgaaaaaaaaaatcagataagcttggtgacattcagtgcaatacacattcgagtatcgtgcatccatgcatgcacctatgcacgcacatgctttacaataataataatatatcagggaagttaagaatcgtgacagcactgcatgtatatgttgttgataaaaatatatacgtgacttaaaactgaaaataacaattagtacaattatgcttaatgtaaatactagaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctgaaatagaagctatagcatttgttcgcattttaatataaaaaaataaatttcatatcaacaatatgtaaagatgtgtttatttctaatatgagtaaactccatgtccggccagcccacatatctaaacgactttagaaagtcgtttatatccgtgtaagcatcagtatgaaatattaggtttgattattgatacattaattttttttaaacttaactactacagtcatgttttgattatccgtccaatattacaaatagtttagaaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCAAAACTGAATATAACACTACGTATA-TT---CTAAATGTAAATACG--AG--AA-AAA-CATATATTA---T----ATGT-AT-TAAAATTATG---TAAGTTTGGTTATC-TAAA-ATA-AATGCTAT--C-T---TTG-------CAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAACATAA-ATTTTATATTAACAATATGTAAAGATGTGCTTATTTTTTATATG----AATAAATTCAACGTCTGGACAGCCCATATATCTAAGCGGG-G-CCTTCAGAAAGTCGATTATATCCATGTATGCGTCAGTAAGAAATATTAGCTTTAA-T-ATTT---GATGCATT-ATTTTATGTAAACTTAACTATTACATTCATGTTTTGATTATTGGTTCAATATTATAAATAGTGTAACAATTCC
gi|5 : AGTTTCTAAAATATTCTGGGAATTTGAA---AATAAAA-TCACATAAGCTTGGTGACATTGCAAT-----TTTA-GTATGTAAACACCACCCAACATAAAATAAAGTTGGATATAATAACGAGATGTAATAAGGCCGAAATA-AAGA-TATTAACAT----AA-----AAAAATGTTGCTGATGT----TT---TAA------------------A--AC--AGGGCTCTGAGGAATTTTAGAGAAAAAAATGTAAAAATGAAAATGACATAGATCCGATTCTAATTTGTTTTTAAGACATTTGTTTTAGATTTTCCTGAAAACGTT--------AACGTAAAT-AT------ACTATATATGTACATTCATGGCCAGTTATA--CTATATTTGATAG-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttctaaaatattctgggaatttgaaaataaaatcacataagcttggtgacattgcaattttagtatgtaaacaccacccaacataaaataaagttggatataataacgagatgtaataaggccgaaataaagatattaacataaaaaaatgttgctgatgttttaaaacagggctctgaggaattttagagaaaaaaatgtaaaaatgaaaatgacatagatccgattctaatttgtttttaagacatttgttttagattttcctgaaaacgttaacgtaaatatactatatatgtacattcatggccagttatactatatttgatag
gi|6 : ctcaaaactgaatataacactacgtatattctaaatgtaaatacgagaaaaacatatattatatgtattaaaattatgtaagtttggttatctaaaataaatgctatctttgcaatatgttctatgtttgtattttaatataaacataaattttatattaacaatatgtaaagatgtgcttattttttatatgaataaattcaacgtctggacagcccatatatctaagcggggccttcagaaagtcgattatatccatgtatgcgtcagtaagaaatattagctttaatatttgatgcattattttatgtaaacttaactattacattcatgttttgattattggttcaatattataaatagtgtaacaattccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAGACATTTATTTTAGATTTTCCTGAAAACAAACCAAGACCAATGTAAATTATTGCTGGAGTAGATATGTACATCCATTATCAGATATA--CTTTATTGGATAG-GAATGGGAGTGGGCCAC-TACCATTTTATATAGAGTAGGTTTTTGGCAACCAAATTTG------TATTTCATTTGCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCACTTTCTCATTGTTTCTT--AAATACGCGTGCAACAAAGATTTTTTATTGAAGTTTCTTTTTATTTAA-AAA-TCTCAACTTATT-ACAACATATTTCACAAATTGCAT----TTT-CAGCATGTATGATATAGCTTTCAACAGTAATAAAAAGA-TTTGTTTTGTCTCA----A----------AG-----TAACAC-------------------------TCTGATAACAAAAAGTCGCTAAA-----C-TGAATGGATGCACAGAAAATTCCAAAC--------TA--T-------TACGTACTCGGTCTGCGACAAAAGCATTCACATAATTGA-GTTCAGATTCATTTC--GTGGTTACATTGTAATAGGGAATGCTATAATAATAC
gi|7 : atatattaaagagtaacaaattctaaggctgcgttcagttcaacacCA-TCA------CTCC----------------------CATCTGTA---A--AAG-CAGCATGTTTTATCTATA-AAA-CTGGATGTT-TTATTTATAAAAACAGGATGTTTTTATCGGATCCGCTGTTTCTTAAATATTCTGGAAATTTGGAAAA-ATA-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAATCATCACGTGTTCATGTACGCATCCATGCACGCACATGCT----------TT-----TC---GTGA---ATCA---AAACTGAAAAT------AACA--------ATATGTTTATGCTAA------ATACG------AAAA---AAAACACGAAACCATATAATTAT----AATACATATA--------AA-AAT-TATGTAT--GTTT-----TGTTATACAA---TATGTTCTATG-TTTG-TATT-T-TA-ATACGA--CTTTTTTAT---TTAT-ATTAACAATATGTTAAGATTGTTTATTGTTTATGTTTTAGTAagaacatataatacaaaatttgttttgttttaaaatgtgacaaggatttaaatatagtgcctcaaattttgtttgtacctagtccgaaaaacctgggcctcagattagctatgggcctg
gi|7 : CGTGAATCAAAACTGAAAATAACAATATGT----TTATGCTAAAT------ACG--AA--AA-AAA---------------ACA--------CGAAACCATA---TA------ATTATAATACATATA-AAAATTAT-GTATGTTTTGTTAT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAC--GACTTTTTTATTT-ATATTAACAATATGTTAAGAT-TGTTTATTGTT--TATGTTTTAGTAACCTCCACATCCTGACAGCCCACATGTCTAAGT-GGAG-CCTTCAGGAAGTCGTTGCTATCCCTGTATGCGTCTGTACGAAATATAAGCTTTAATT-ATT----GATGCATTAATTTTATATAAAATTAACTACTACAATCATGTTTTGATTATCCGTCCAATAT---AAATAGAGTAACAGAacctccacatcctgacagcccacatgtctaagtggagccttcaggaagtcgttgctatccctgtatgcgtctgtacgaaatataagctttaattattgatgcattaattttatataaaattaactactacaatcatgttttgattatccgtccaatataaatagagtaacaga
gi|8 : catcactcccatctgtaaaagcagcatgttttatctataaaactggatgttttatttataaaaacaggatgtttttatcggatccgctgtttcttaaatattctggaaatttggaaaaataatcagataagcttggtgacattgcaatacacattcaatcatcacgtgttcatgtacgcatccatgcacgcacatgcttttGAAAATATTCACATTATGAATCA-TAA------CTCC----------------------CGTCT------A--AAA---------------------A--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAT-A-A-A--TCAGATAAGATTGATGACATT----GCAATACACATTCAGGTATCACGCATTCATGCA-----------A-GCACATGCT----------TTACA-ATA---ATAATATATCACAGAAGTTACGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAA-------TAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AATAAA-CATATATCAGGTTGACAACGTAAT-CAAAGTTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAATAT---TTGT-AT--ATAATATGT--------TCTA-TGTTTGTTTTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTAT
gi|9 : tgGCGTGTAA------TTTTAAATTGCTGTTTCTTTTTTTTTTTTAAT-TTTCAACACATT-GCCACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGGTATAGCTATCAACAGTTATAAAAATATCTTGTTAGGTCTCATCTGAACAATCTTCCAG-----TAGCACTCGGTAACTTTCGGT------TATCTCCGATAACAAAAAGTCGCGAGG-----C-TGATTGGATGCACGGAAGATTCCGAA-CGTTAC-GT---TATA--TATATGTACTTCGCCTACGACAACAGCATCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGAAAGATTATAATAATACTGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCTAGCCCGAAAAACAGGGAGTGTGGTGCCTCAGAGTAACTATGGGCCTGATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333333333333333 111111 33333333333333333333 11 2222222222 11 11111111 1111 2222 22222222 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111 111 111111 22 333333 22222222 1 3333333333 11 222222 222 111 1 444444 1111 11111 111111 11111 111111111 11111
lowQualScore : 4 111111 5555555555555555555555 888888 55 77777777777777777777 00 4 4 0 777 4 4 4 55 8888 1 7777777777 4 777 22 1 1 0 66 0 1 66 00 4 4 0 77777 6 4 777 2 4 4 4 2 77 777 4 66 88888888 5 77 5 1 3 4444 6 3333 0 0 55555555 5 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 444 1 88 3 6 6 6 1 1 6 6 3 6 4444 111 3 8 99 3 777777 0 00 0 888888 0 1 99999999 3 1111111111 0 3 11 1 8 0 3 1 888888 1 000 1 1 444 0 999999 666 5 5 3 5 3 2222 5 0 22 1 0 1 0 44444 0 3 333 666666 6 4 44444 5 2 2 11 555555555 66 11 22222 0 1 3 1
lowQualScore : . ...... ...................... ...... .. .................... .. . . . ... . . . .. .... . .......... . ... .. . . . .. . . .. .. . . . ..... . . ... . . . . . .. ... . .. ........ . .. . . . .... . .... . . ........ . ............................................................................................................................... ... . .. . . . . . . . . . . .... ... . . .. . ...... . .. . ...... . . ........ . .......... . . .. . . . . . ...... . ... . . ... . ...... ... . . . . . .... . . .. . . . . ..... . . ... ...... . . ..... . . . .. ......... .. .. ..... . . . .
lowQualScore : 0 555555 5555555555555555555555 555555 55 88888888888888888888 66 4 6 9 888 0 0 0 55 5555 9 2222222222 4 888 88 4 4 3 11 8 8 11 66 4 4 1 11111 9 4 888 2 4 4 4 2 77 888 4 11 11111111 0 99 7 7 5 2222 7 7777 7 3 22222222 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 4 88 5 7 7 7 0 0 7 7 7 7 2222 777 7 0 00 0 222222 8 77 7 333333 2 0 00000000 2 4444444444 8 2 00 4 0 8 2 0 888888 0 888 0 0 888 0 222222 999 9 0 4 0 6 1111 7 7 66 7 6 7 4 33333 1 0 777 444444 6 0 33333 7 7 4 44 333333333 99 44 55555 1 4 0 4
consensus : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA-CAGGATGTTTTATCTATA-AA--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAA-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAATT-ATTT---GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATACTCTGGGAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-AC--AGGTTTCTGAGGAATTCGTGA-AAAAAAATGTAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAGACATTTGTTTTAGATNTTCCTGAAAACGTA--------AACGTAAATGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTATATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATNTG------CTTTTCATNTCCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCGCTTTCTNGCTGTTTTNT--NAAT-CGCGTGTAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTTGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TTA--TATA--TATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAATGNTATAGTAATACTGTA
Reference ( family-951 ) : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA-CAGGATGTTTTATCTATA-AA--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAA-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAATT-ATTT---GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATACTCTGGGAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-AC--AGGTTTCTGAGGAATTCGTGA-AAAAAAATGTAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAGACATTTGTTTTAGATNTTCCTGAAAACGTA--------AACGTAAATGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTATATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATNTG------CTTTTCATNTCCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCGCTTTCTNGCTGTTTTNT--NAAT-CGCGTGTAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTTGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TTA--TATA--TATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAATGNTATAGTAATACTGTA
gi|1 : GAAAATATTCACATTATAAATCA-TTA------CTTC----------------------CATCT------A--AAA-CAGGATGTTTTATCTATATAA--CAGGATGTT-T-ATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAT-A-A-A--TCAGATGAGCTTGGTGACATT----GCAATACACATTGAAGTATCACGCATCCATGCACGCACCCATGTACGCGCATACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGTTGTTGATAAAAATATGTACGTGACTCAAATCTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTAAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-AAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTCCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-TCTTTAGAAAGTCGTTTACATCCATGTAAGCATCAGTATGAAATATCAGGTTTAATTTATTTAGTGATTCATTAATTTTATGTAATCTTAACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGTGTAGCAAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAATTATTCTGGGAATTTGAA---AAAAAAAATCAGTTACGCTTGGTGACGTTGCAATATACATTCAAGTGTGTAT-TGCCACCCA-TA-AAAATAAAATACAATACAATATCAAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAATTTCACTGC-AAAAAGAAAC-ACCCAGGTTTCTGAGGAATTCGTGA-AAAAAAATATAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAAACATTTCTTTTAGATATTCTTGAAAATGTA--------AACGTAAA-GAT------AGTAGATATGTACATTCATGGC-GGTTATA--CTATGCTGGATAG-GAATAGGAGTGGGGGAAATACCATTTTATAAAGAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATATCCGGTCTAGTTGCAAATATACTTATTATAAACCAACCAACCGCTTTCTGGCTGTTTTGT--CTAT-CGCGTGTAA------TTTTTTATTGCTGTTTCTTTTTATTTCT-AAT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGTTTGTATGATATAGCTTTCAACAGTTATAAAAAGATTCTGTTTGGTCTCATCTGAACAATCCTCCAG-----TAACACTTGGTAATTTTCGGT------TATCTCCTATAAAAAAAAGTCGCAAAG-----C-TGATTGGATGCACGGAAGATTACGGACCGTTACGTTA--TATA--TATATGTACTCCGTCTACGACAACAGCGTCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGGAATACTATAGTTATACTGTA
gi|10 : ATTGCTGTTCCTTTTTAATTCA-ATT-TTTCAACACATT-ATAACATGGTTCACAAATTGTAT----TTA-CAGCATG----ATATAGTTTTCAACAGTTATAAAATTATTTTGTGAGGTATCATCTGAACAACCCTCAAG-----AAACACTTGTTTGTTTTCGGTCACTAGTATCTCTGATAACAAAATGTCGCTAAG-----C-TGATAGGATGCACGGAAAATTCCAAACCGTTTC-TTAAATATG--TATACATACACCATCTGCGACAACAGCGTCCACA-----TAGGTTCAGATTCATTTCTTCTGGTTCTGTTGTACTAGCGAATGGTACAGTA
gi|11 : AAAATATTTACATTACAAATTA-TCA------CTCC-----------------------ATCT------ATAAAA-C-------TTTA-----A-AA--CAGGATGGT-TTGTTTATAAAA-CAGGATGTTATTATCGGATTCG---TTTCTGAAATATTCTGAGAA--------------A--TCAGATAAGCTTGGTGACCAT----GCAATATACATTCAAGTACCATGCATCCATGCACGCATCAATACGCGCACATGCTTAAATTATGATTAAAGATA---ATAATATATCATGGAAGTTAAGAATCATTGTGACATTGCATGAATATGTTGTTGATAACAA-AAACACGTTAATCAAA----AAAATAACAATACGTA----TATGCTAAATGTAAATACG--AGAAAA-AAA-CATATATCA--T-----ATGTATT-CAAAATTATG---TAAGTTTTGTTATC-TAAA-ATA-AATG--ATA--------TGT-AT--ACAATATGttgtaatttataaagttttaaaatgcaacaagtgcctcaattttttcatacctagttaaaaaactgggaggcccttaagggcaagggccttcctgggtctcaaagcagctacaggcc
gi|12 : gaTTTATTGCTGTTTCTTTTTATTTCA-A-T-TTTCAACATATT-ACA---TGCTTCACAAATTGTAT----TTG-CAACATGTATGGTATAGTTTGCAACAGTTATAAAACTATTTTGTTTGGTTTCATCTGAACAGCCCTACAG-----TAACATCCGTTTGTTTTCGGT------TATCTTCGATAACAAAATGTCGCAAAG-----C-TGATCGGATGCACGGAATATTCCGAACCGT--------------------G---------TGCGACAACAGTGTCCACA-----TAGGTTCAGATTCATT
gi|13 : GTA--------AA--TAAGCGGG------AGT-GCTATGTACATTCATGGCCAGTTATATACTTTATTGGATAG-GAATGGAAGTTGGGACAATACCATTTTATATAGAGTAGGTTTTGGGAAACCAAATTTGTTTTGTTTTTTTATTTCCGGCCTAGTTGCGAATCCACTTATTATA--TCAACCAATCGCTTTCTTACTGTTTTCTTAAAAT-TGCGTCCAACAAAG-TTTTTTTCTCTTGTTTCTTTTTACTT---AGTATTTCAA---ATTAACAACaatagtaatacagttttataatttatttagttttaaaatgcaacaaggatatttaatatagtgcctcaaatttgtttcgtacctagcccgaaaaatagggggataccggctttcctgggtctcagagtagctacgggcct
gi|14 : tAAAATATTCACATTATAAAGCA-TTA------CTCC----------------------CATCT------A--AAAACAGGATGTTTTATCTATATAA--CAGGATGTT-TTATTTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGTGAATTTGAAAAA-A-A-A--TCAGAATAGCTTTGTGACATT----GCAATGCACATTCAAGTATCACGCATCCATGCACGCACCCATGTATGCACATGCT----------TTACA-ATA---ATAATATATCAC-GAAGTTAAGAATCATTGCAGC
gi|15 : TGTTTCCTTTTATTTCA-ATT-TTTCAGC-CGTT-ACAACATGTTTCACAAATTGTATACTATTGGCAGCATGTAT--TATAGCTTTCAACAGTTATGAAACAAAATTGTTCGGTTTCATCTGAACAGCCCTCTAGAAGCCTAGCATTCGCTTGATTTCGGT------TATCTCCGACAACAAAACGTCGCGAAACTGATC-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TAA--TAT
gi|16 : A--TATA--TATACACACTCCGTCTGCGGCAACAACGTCCACA-----TAGGTTTAGATTCATTTCTTGTGGTTCTGTTGTAATAGGGAATGTTATCATAATGCAGTAcagtacatt
gi|17 : GAAAATATTCACATTACAAAAAAATCA------CTCCAATCTGTTAACACAAAATGTTTTATCTGAAAAAA--AAA-CGGGATGTTTTATCTTTA-AAAACAGGATGTTCTTATCTATAA---CTGGGTGTTTTTATCGGATCCG---TTT--AAAGTATTCTTGGAATTTGAAAAA-T-A-A--TCAGATGAGATTGGTGACATT----GCAATACACATTCAAGTATCTTGCATACATGCACttataatttgtttagttttaaaatgcaatatggatgttcaatatagtgtctcaaaatttgttcgtacctagcacgaaaaacagggagtgaccggcttccctgggcctcagagtagctacaggcctgcg
gi|18 : TA--TATA--TATACGTAATTCTCCTGCAACAACAGCGTCTATA-----GGTTTTCAGATTCATTTCCTGTGATTCCGTTGTACTGAGGAATGATATGGCGATACAGTatg
gi|19 : GAAAATATTCACATTATCACT---TTGGGGAGTCTCC----------------------CATCT------A--AAA-AA-----TTTTA-----A-AA--CAGGAAGAT-TTATCTATAATA-CAG--TATTT-----------G---TTTCTAAAATATTCTGGGAATTGGAAAAA-A-A-A--TCAGATAAGCGTGGTGACATT----GCAATACACATTCATGTATCACACATCCATGCATGCA--CATGCCCAT-CATGATTAA-------TTAAG-ATA---ATAATATATCtttataatttatttactttaaaatgaaacacatatttttcgtactaatagcccgaaaaacagggaggccggcacagggaggcatcggcctcccgctgtgcctcagagtagctacgggcct
gi|2 : ttgGAATTTGAAAAAGA-A-A--TCAGATAAACTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGGTGTTGATCAAAATACATACGTGACTCAAATCTGAAAATAATAATACGTATAATTATGCTAAATGTAAATACGAAAA--AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--ATTAATAT-TTTTTTTATAAACAATATGTTAAGATGTGTTTATTTCTAATAAT----AGTAATCTCCACGTCCGGATAGCTCACATATCTAAGC-GA----CTTTAGAAAGTCGTTTATATCCATGTAAGCATCAGTATGAAATATTAAGTTTAATT-A-TT---GATGCATTAATTGTATGTAAACCTTACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGCAAATCC
gi|2 : TTTCCTAAATACTCTGGGAATTTGAA---AATAAA--TCAGTTAAGCTTGGTAACATTGCAATATACATTCAAGTGTGTAT-TACTACCCA-TA-GAAATAGAATAAGATACAATATTGAGATGTTGTGAGGTAGAAATA-ATGA-TACAATCATTCGCCATGTT-AAAAATGTTTTTGTTTT----TTTTCTGACTTCACTGCAAAAAA-AAACAAC--AGGTGTTTGAGGAATTTGTG--ATAATAATGTAAAAATGAAAATGACATA------ATCGTAATCAATTTTTAAAACATTTGTTTTAGATATTCTTGAAAACGTA--------AA-GTAAA-GAT------AGTAAATATGTACATTCATGG-CAGTTATA--CTATTTTGGAAAACAAATGGGAGTGGGGAAAATACCATTTTATATAAAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATGTCCGATCTAGTTGCAAATCCACATATTATA----AACCAACCGCTATCTGGCTGTTTTGT--TAAT-CGCGTGTAA------TCTTTAATTGCTGTTTCTTTTTCTTTCA-AGT-TTTCAACACATT-ACAACATG-TTCAAAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTGAACAGTTATAAAAAGATTTTACTTGGTCTCAACTGAACAATCCTCCAG-----TAACACTCGGTAATGTTCGAT------TATCTCCGGTAACAAAA-GTCACAAAG-----CTTTTTTGAATGCACG--------------GTTACGTTA--TACAATTATATATACTCCACCTGCGACAACAGCATCCACA-----GAGGTTCAGGTTAGATTCTTGCGATTCTGTTTTACTAGGGA-----ACAGTAACACTGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcctaaatactctgggaatttgaaaataaatcagttaagcttggtaacattgcaatatacattcaagtgtgtattactacccatagaaatagaataagatacaatattgagatgttgtgaggtagaaataatgatacaatcattcgccatgttaaaaatgtttttgttttttttctgacttcactgcaaaaaaaaacaacaggtgtttgaggaatttgtgataataatgtaaaaatgaaaatgacataatcgtaatcaatttttaaaacatttgttttagatattcttgaaaacgtaaagtaaagatagtaaatatgtacattcatggcagttatactattttggaaaacaaatgggagtggggaaaataccattttatataaagtagattttgggcaaccaaatgtgcttttcatgtccgatctagttgcaaatccacatattataaaccaaccgctatctggctgttttgttaatcgcgtgtaatctttaattgctgtttctttttctttcaagttttcaacacattacaacatgttcaaaaattgtatttacagcatgtatgatatagctttgaacagttataaaaagattttacttggtctcaactgaacaatcctccagtaacactcggtaatgttcgattatctccggtaacaaaagtcacaaagcttttttgaatgcacggttacgttatacaattatatatactccacctgcgacaacagcatccacagaggttcaggttagattcttgcgattctgttttactagggaacagtaacactgtattacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|20 : gaatttgaaaaagaaatcagataaacttggtgacattgcaatacacattcaagtatcacgcatccatgcacgcacccatgcacgcacatactttacaataataatatatcacggaagttaagaatcatggcagcactgtatgtatatggtgttgatcaaaatacatacgtgactcaaatctgaaaataataatacgtataattatgctaaatgtaaatacgaaaaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctaaaatagaagctatagcatttgtatacaatatgttctatgtttgtattttaatatattaatattttttttataaacaatatgttaagatgtgtttatttctaataatagtaatctccacgtccggatagctcacatatctaagcgactttagaaagtcgtttatatccatgtaagcatcagtatgaaatattaagtttaattattgatgcattaattgtatgtaaaccttactacataatcatgttttgattatccgtccaatattacaaatagtttagcaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGATAAGCTTGGCGACATTGCAATATACATTTATGTATGTAT-CACCACCCA-TC-AAAATAAAATTAGATACACAATCGAGATGTAGTAAAGCGGAAATACACAACTACT---ATTCGCCCTATT-AAAAATAGGGTTGATGT----TT---TAACTTCACTGC-AAAAA-Attacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|22 : GAAAGTATTCACATTCTAAATCA-TTA------CTCC----------------------AATCT------A--AAA-caaaaa
gi|3 : gAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAAACAGGATGTTTTATCTATATAG--CAAGATGTT-TTATCTATAAAAACAGGATGTTTTCCTAGAATCCG---TTTCTAAAGTGTTCTTGGAATTTGAAAAA-A-ATA--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCATGCACCCATGTACGCACATGCT----------TTACA-ATA---ATTATATATCACGGAAGTTATGAATCAGGGCAGCGCTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCCAAACTGAAAATAACAATACGTATAACTATGCTAAATGAAAATACG--AG--AA-AAAACATATATCAGGTTGACAACGTAAT-CAAAAGTGTG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATAATAAGATGTGTTTGTTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-GGTCTTTAGAAAGT---TTATATCCATGTAATCATCCGTATGAAATATCAGGTTTAATTTATTTAGTGATGCATTAATTTTATGTAAACTAAACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGCGTAGCAAATC-CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTTTAAAATACTCTGGAAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TG-AAAATGAAATAAAATACAATATCAAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCAATGTA-AAAAATGTTGTTGATGTTCAATT---TTTTTTCACTGC-AAAAT-ACAT-CC--AGGTTTCTGAGGAATTCGacg
gi|4 : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA---------------------A--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTAATCAAATCAG---TT--------ATTCTTTGAATTTGAAAAA-A-A-AAATCAGATAAGCTTGGTGACATTCAGTGCAATACACATTCGAGTATCGTGCATCCATGCATGCACCTATGCACGCACATGCT----------TTACA-ATAATAATAATATATCAGGGAAGTTAAGAATCGTGACAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTTAAAACTGAAAATAACAATTAGTACAATTATGCTTAATGTAAATACT--AGA-AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TGAA-ATA-GAAGCTATAGCAT---T------------------------------TGTTCGCATTTTAATATAAAAAAATAA-ATTTCATATCAACAATATGTAAAGATGTGTTTATTTCTAATATG----AGTAAACTCCATGTCCGGCCAGCCCACATATCTAAAC-GA----CTTTAGAAAGTCGTTTATATCCGTGTAAGCATCAGTATGAAATATTAGGTTTGATT-A-TT---GATACATTAATTTTTTTTAAACTTAACTACTACAGTCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGAAAATCC
gi|4 : tgTTTCTAAAATACTCTGGGAATTTGAAGAAAAAAAAA-TCAGTTAAGCTTGATGACATTGCAGTATACATTGAAGTGTGTTT-TGCCACCTA-TA-AAAACAAAATTAGATACAAAATCGAGATGTAGTGAGGCTGAAATA-ATGA-TACTGTCATTCGCCATGTTAAAAAATGTTGTTGATGT----TT---TAACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttctaaaatactctgggaatttgaagaaaaaaaaatcagttaagcttgatgacattgcagtatacattgaagtgtgttttgccacctataaaaacaaaattagatacaaaatcgagatgtagtgaggctgaaataatgatactgtcattcgccatgttaaaaaatgttgttgatgttttaact
gi|5 : tggaaaatattcacattataaatcattactcccatctaaaaacaggatgttttatctataaaaacaggatgttttaatcaaatcagttattctttgaatttgaaaaaaaaaatcagataagcttggtgacattcagtgcaatacacattcgagtatcgtgcatccatgcatgcacctatgcacgcacatgctttacaataataataatatatcagggaagttaagaatcgtgacagcactgcatgtatatgttgttgataaaaatatatacgtgacttaaaactgaaaataacaattagtacaattatgcttaatgtaaatactagaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctgaaatagaagctatagcatttgttcgcattttaatataaaaaaataaatttcatatcaacaatatgtaaagatgtgtttatttctaatatgagtaaactccatgtccggccagcccacatatctaaacgactttagaaagtcgtttatatccgtgtaagcatcagtatgaaatattaggtttgattattgatacattaattttttttaaacttaactactacagtcatgttttgattatccgtccaatattacaaatagtttagaaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCAAAACTGAATATAACACTACGTATA-TT---CTAAATGTAAATACG--AG--AA-AAA-CATATATTA---T----ATGT-AT-TAAAATTATG---TAAGTTTGGTTATC-TAAA-ATA-AATGCTAT--C-T---TTG-------CAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAACATAA-ATTTTATATTAACAATATGTAAAGATGTGCTTATTTTTTATATG----AATAAATTCAACGTCTGGACAGCCCATATATCTAAGCGGG-G-CCTTCAGAAAGTCGATTATATCCATGTATGCGTCAGTAAGAAATATTAGCTTTAA-T-ATTT---GATGCATT-ATTTTATGTAAACTTAACTATTACATTCATGTTTTGATTATTGGTTCAATATTATAAATAGTGTAACAATTCC
gi|5 : AGTTTCTAAAATATTCTGGGAATTTGAA---AATAAAA-TCACATAAGCTTGGTGACATTGCAAT-----TTTA-GTATGTAAACACCACCCAACATAAAATAAAGTTGGATATAATAACGAGATGTAATAAGGCCGAAATA-AAGA-TATTAACAT----AA-----AAAAATGTTGCTGATGT----TT---TAA------------------A--AC--AGGGCTCTGAGGAATTTTAGAGAAAAAAATGTAAAAATGAAAATGACATAGATCCGATTCTAATTTGTTTTTAAGACATTTGTTTTAGATTTTCCTGAAAACGTT--------AACGTAAAT-AT------ACTATATATGTACATTCATGGCCAGTTATA--CTATATTTGATAG-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttctaaaatattctgggaatttgaaaataaaatcacataagcttggtgacattgcaattttagtatgtaaacaccacccaacataaaataaagttggatataataacgagatgtaataaggccgaaataaagatattaacataaaaaaatgttgctgatgttttaaaacagggctctgaggaattttagagaaaaaaatgtaaaaatgaaaatgacatagatccgattctaatttgtttttaagacatttgttttagattttcctgaaaacgttaacgtaaatatactatatatgtacattcatggccagttatactatatttgatag
gi|6 : ctcaaaactgaatataacactacgtatattctaaatgtaaatacgagaaaaacatatattatatgtattaaaattatgtaagtttggttatctaaaataaatgctatctttgcaatatgttctatgtttgtattttaatataaacataaattttatattaacaatatgtaaagatgtgcttattttttatatgaataaattcaacgtctggacagcccatatatctaagcggggccttcagaaagtcgattatatccatgtatgcgtcagtaagaaatattagctttaatatttgatgcattattttatgtaaacttaactattacattcatgttttgattattggttcaatattataaatagtgtaacaattccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAGACATTTATTTTAGATTTTCCTGAAAACAAACCAAGACCAATGTAAATTATTGCTGGAGTAGATATGTACATCCATTATCAGATATA--CTTTATTGGATAG-GAATGGGAGTGGGCCAC-TACCATTTTATATAGAGTAGGTTTTTGGCAACCAAATTTG------TATTTCATTTGCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCACTTTCTCATTGTTTCTT--AAATACGCGTGCAACAAAGATTTTTTATTGAAGTTTCTTTTTATTTAA-AAA-TCTCAACTTATT-ACAACATATTTCACAAATTGCAT----TTT-CAGCATGTATGATATAGCTTTCAACAGTAATAAAAAGA-TTTGTTTTGTCTCA----A----------AG-----TAACAC-------------------------TCTGATAACAAAAAGTCGCTAAA-----C-TGAATGGATGCACAGAAAATTCCAAAC--------TA--T-------TACGTACTCGGTCTGCGACAAAAGCATTCACATAATTGA-GTTCAGATTCATTTC--GTGGTTACATTGTAATAGGGAATGCTATAATAATAC
gi|7 : atatattaaagagtaacaaattctaaggctgcgttcagttcaacacCA-TCA------CTCC----------------------CATCTGTA---A--AAG-CAGCATGTTTTATCTATA-AAA-CTGGATGTT-TTATTTATAAAAACAGGATGTTTTTATCGGATCCGCTGTTTCTTAAATATTCTGGAAATTTGGAAAA-ATA-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAATCATCACGTGTTCATGTACGCATCCATGCACGCACATGCT----------TT-----TC---GTGA---ATCA---AAACTGAAAAT------AACA--------ATATGTTTATGCTAA------ATACG------AAAA---AAAACACGAAACCATATAATTAT----AATACATATA--------AA-AAT-TATGTAT--GTTT-----TGTTATACAA---TATGTTCTATG-TTTG-TATT-T-TA-ATACGA--CTTTTTTAT---TTAT-ATTAACAATATGTTAAGATTGTTTATTGTTTATGTTTTAGTAagaacatataatacaaaatttgttttgttttaaaatgtgacaaggatttaaatatagtgcctcaaattttgtttgtacctagtccgaaaaacctgggcctcagattagctatgggcctg
gi|7 : CGTGAATCAAAACTGAAAATAACAATATGT----TTATGCTAAAT------ACG--AA--AA-AAA---------------ACA--------CGAAACCATA---TA------ATTATAATACATATA-AAAATTAT-GTATGTTTTGTTAT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAC--GACTTTTTTATTT-ATATTAACAATATGTTAAGAT-TGTTTATTGTT--TATGTTTTAGTAACCTCCACATCCTGACAGCCCACATGTCTAAGT-GGAG-CCTTCAGGAAGTCGTTGCTATCCCTGTATGCGTCTGTACGAAATATAAGCTTTAATT-ATT----GATGCATTAATTTTATATAAAATTAACTACTACAATCATGTTTTGATTATCCGTCCAATAT---AAATAGAGTAACAGAacctccacatcctgacagcccacatgtctaagtggagccttcaggaagtcgttgctatccctgtatgcgtctgtacgaaatataagctttaattattgatgcattaattttatataaaattaactactacaatcatgttttgattatccgtccaatataaatagagtaacaga
gi|8 : catcactcccatctgtaaaagcagcatgttttatctataaaactggatgttttatttataaaaacaggatgtttttatcggatccgctgtttcttaaatattctggaaatttggaaaaataatcagataagcttggtgacattgcaatacacattcaatcatcacgtgttcatgtacgcatccatgcacgcacatgcttttGAAAATATTCACATTATGAATCA-TAA------CTCC----------------------CGTCT------A--AAA---------------------A--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAT-A-A-A--TCAGATAAGATTGATGACATT----GCAATACACATTCAGGTATCACGCATTCATGCA-----------A-GCACATGCT----------TTACA-ATA---ATAATATATCACAGAAGTTACGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAA-------TAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AATAAA-CATATATCAGGTTGACAACGTAAT-CAAAGTTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAATAT---TTGT-AT--ATAATATGT--------TCTA-TGTTTGTTTTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTAT
gi|9 : tgGCGTGTAA------TTTTAAATTGCTGTTTCTTTTTTTTTTTTAAT-TTTCAACACATT-GCCACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGGTATAGCTATCAACAGTTATAAAAATATCTTGTTAGGTCTCATCTGAACAATCTTCCAG-----TAGCACTCGGTAACTTTCGGT------TATCTCCGATAACAAAAAGTCGCGAGG-----C-TGATTGGATGCACGGAAGATTCCGAA-CGTTAC-GT---TATA--TATATGTACTTCGCCTACGACAACAGCATCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGAAAGATTATAATAATACTGTA
blockSeqs : A GGGAGT AATCTGTTAACACAAAATGTTT GAAAAA TA ACAGGATGTTTTATCTATAT AA C A CTG G T T AA CAGT T TAAATTATGA G ATA TG C T TC A AA AA T A GGTTG A A TTC A A T C T AG GTT T TA TAAGATTG T AA T T A TTTT G GGT TATTTAGT T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN GAA T A A A A T A A C C A A TCAA TTC C A A A CAAC AG GATCCG A CCAAGACC C TTATTGCTGG C TA T C A T TTTTGT T T T C TAA A CAAAGA TTT T A A A G ACTA G TT T T AAGCC T TGT CACTAG T T CTGAT T A A CC TTCTTAAA AT AT TAATT T G A
blockSeqs : . . . GTA . ACAGGATGTTTTATCTATAT A . A . . . . . . C TAA . . CG A T AC A . A . . GGTTG T . . T . . . A AG . . . . . . . C A . . AGC ATTT T . A A T . . . T G . . G . . . C . A C TCC . . T . T CGGG C . A . A G . G T G G T . CAAAG CA G . A . C . . CT T T . T TGT . T A . . C T CC TACGTTA . GT . T T A
blockSeqs : . . . . . CGGGATGTTTTATCTTTA . . A . . . . . . C . . . CG A T AC A . . . . GGTTG A . . T . . . A AG . . . . . . . C A . . GC ATT T . A A A . . . A C . . G . . . T . T . AC T . . GAT T . A . . T . T . C T A . . CA T . A . T . . CA A T . C TGA . C G . . C A CC TACTAA . TC . C A T
blockSeqs : . . . . . CAGCATGTTTTATCTATA . . A . . . . . . C . . . GG A T AC A . . . . GGTTG T . . T . . . A TT . . . . . . . T T . . . ATT . . T . A . . . T T . . A . . . C . . . . TAT . . T . . CA G . T . T . . AG T A . G AAT . A A . . T A C TACGT . AC . T C T
blockSeqs : . . . . . AATTTTAA . . A . . . . . . C . . . CA A . AC A . . . . GTTT T . . A . . . T AA . . . . . . . C . . . . ATT . . . . . T C . . . . . . . CA A . A . T . . AG T T . G AAC . A T . . T G C TA . GT . C T
blockSeqs : . . . . . CTTTAA . . . . . . . . . T . . . C . . A . . . . . T A . . T . . . A A . . . . . . . . AA A . . . . . . AT . . . . . . . G . . T . . . . GC . T .
blockSeqs : . . . . . . . . . . . . . . . . . . . . A . . . . . T . . . T . . . A G . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : CAGGATGTTTTATCTTA*** GC** ATT***** A* A* TACTA****
originalCons : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA-CAGGATGTTTTATCTATA-AA--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAA-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAATT-ATTT---GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATACTCTGGGAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-AC--AGGTTTCTGAGGAATTCGTGA-AAAAAAATGTAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAGACATTTGTTTTAGATNTTCCTGAAAACGTA--------AACGTAAATGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTATATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATNTG------CTTTTCATNTCCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCGCTTTCTNGCTGTTTTNT--NAAT-CGCGTGTAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTTGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC-TTA--TATA--TATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAATGNTATAGTAATACTGTA
finalCons : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAACAGGATGTTTTATCTTA---AA--CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAA-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GGGC--CTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAATTATT-----GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATACTCTGGGAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-AC--AGGTTTCTGAGGAATTCGTGA-AAAAAAATGTAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAGACATTTGTTTTAGATNTTCCTGAAAACGTA--------AACGTAAATGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTATATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATNTG------CTTTTCATNTCCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCGCTTTCTNGCTGTTTTNT--NAAT-CGCGTGTAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTTGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTACTA----TATA--TATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAATGNTATAGTAATACTGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCTAGCCCGAAAAACAGGGAGTGTGGTGCCTCAGAGTAACTATGGGCCTGATA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 3333333333333333333333 111111 55555555555555555555555 2222222222 11 11111111 1111 2222 1 2222 1 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111 111 111111 22 333333 22222222 1 3333333333 11 222222 222 111 1 444444 1111 11111 111111 11111 111111111111 11111
lowQualScore : 4 111111 5555555555555555555555 888888 55 88888888888888888888888 4 4 4 0 777 4 4 4 55 8888 1 7777777777 4 777 22 1 1 0 66 0 1 66 00 4 4 0 77777 6 4 777 2 4 4 4 2 77 777 4 66 88888888 5 77 5 1 3 4444 6 3333 0 0 3 8888 5 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 444 1 88 3 6 6 6 1 1 6 6 3 6 4444 111 3 8 99 3 777777 0 00 0 888888 0 1 99999999 3 1111111111 0 3 11 1 8 0 3 1 888888 1 000 1 1 444 0 999999 666 5 5 3 5 3 2222 5 0 22 1 0 1 0 44444 0 3 333 666666 6 4 44444 5 2 2 0 99 1 444444444444 3 11 22222 0 1 3 1
lowQualScore : . ...... ...................... ...... .. ....................... . . . . ... . . . .. .... . .......... . ... .. . . . .. . . .. .. . . . ..... . . ... . . . . . .. ... . .. ........ . .. . . . .... . .... . . . .... . ............................................................................................................................... ... . .. . . . . . . . . . . .... ... . . .. . ...... . .. . ...... . . ........ . .......... . . .. . . . . . ...... . ... . . ... . ...... ... . . . . . .... . . .. . . . . ..... . . ... ...... . . ..... . . . . .. . ............ . .. ..... . . . .
lowQualScore : 0 555555 5555555555555555555555 555555 55 88888888888888888888888 4 4 6 9 888 0 0 0 55 5555 9 2222222222 4 888 88 4 4 3 11 8 8 11 66 4 4 1 11111 9 4 888 2 4 4 4 2 77 888 4 11 11111111 0 99 7 7 5 2222 7 7777 7 3 3 3333 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 4 88 5 7 7 7 0 0 7 7 7 7 2222 777 7 0 00 0 222222 8 77 7 333333 2 0 00000000 2 4444444444 8 2 00 4 0 8 2 0 888888 0 888 0 0 888 0 222222 999 9 0 4 0 6 1111 7 7 66 7 6 7 4 33333 1 0 777 444444 6 0 33333 7 7 4 7 33 4 999999999999 4 44 55555 1 4 0 4
consensus : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA-CAGGATGTTTTATCTAT---A-AA-CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAA-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAATT-ATT----GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATACTCTGGGAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-AC--AGGTTTCTGAGGAATTCGTGA-AAAAAAATGTAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAGACATTTGTTTTAGATNTTCCTGAAAACGTA--------AACGTAAATGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTATATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATNTG------CTTTTCATNTCCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCGCTTTCTNGCTGTTTTNT--NAAT-CGCGTGTAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTTGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC--T---ATA--TATATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAATGNTATAGTAATACTGTA
Reference ( family-951 ) : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA-CAGGATGTTTTATCT-T---A-AA-CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAA-A-A-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATGCT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAACTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTNAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-CCTTTAGAAAGTCGTTTATATCCATGTAAGCGTCAGTATGAAATATTAGGTTTAATT-ATT----GATGCATTAATTTTATGTAAACTTAACTACTACAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTGTAGCAAATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAAATACTCTGGGAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TA-AAAATAAAATNAGATACAATATCGAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAACTTCACTGC-AAAAA-AAAC-AC--AGGTTTCTGAGGAATTCGTGA-AAAAAAATGTAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAGACATTTGTTTTAGATNTTCCTGAAAACGTA--------AACGTAAATGAT------AGTAGATATGTACATTCATGGCCAGTTATA--CTATATTGGATAG-GAATGGGAGTGGGGAAAATACCATTTTATATAGAGTAGGTTTTGGGCAACCAAATNTG------CTTTTCATNTCCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCGCTTTCTNGCTGTTTTNT--NAAT-CGCGTGTAACAAAG-TTTTTTATTGCTGTTTCTTTTTATTTCA-ANT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTCAACAGTTATAAAAANATTTTGTTTGGTCTCATCTGAACAACCCTCCAG-----TAACACTCGNTNGTTTTCGGT------TATCTCCGATAACAAAANGTCGCGAAG-----C-TGATCGGATGCACGGAAAATTCCGAACCGTTAC--T---ATA--TATATACGTACTCCGCCTGCGACAACAGCGTCCACA-----GAGGTTCAGATTCATTTCTTGTGGTTCCGTTGTACTAGGGAATGNTATAGTAATACTGTA
gi|1 : GAAAATATTCACATTATAAATCA-TTA------CTTC----------------------CATCT------A--AAA-CAGGATGTTTTATCTAT---ATAA-CAGGATGTT-T-ATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAT-A-A-A--TCAGATGAGCTTGGTGACATT----GCAATACACATTGAAGTATCACGCATCCATGCACGCACCCATGTACGCGCATACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGTTGTTGATAAAAATATGTACGTGACTCAAATCTGAAAATAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AA-AAA-CATATATCAGGTTGACAACGTAAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-AAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTCCATATCAACAATATGTTAAGATGTGTTTATTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-G-TCTTTAGAAAGTCGTTTACATCCATGTAAGCATCAGTATGAAATATCAGGTTTAATTTATTTAGTGATTCATTAATTTTATGTAATCTTAACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGTGTAGCAAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTCTAAATTATTCTGGGAATTTGAA---AAAAAAAATCAGTTACGCTTGGTGACGTTGCAATATACATTCAAGTGTGTAT-TGCCACCCA-TA-AAAATAAAATACAATACAATATCAAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCCATGTT-AAAAATGTTGTTGATGT----TT---TAATTTCACTGC-AAAAAGAAAC-ACCCAGGTTTCTGAGGAATTCGTGA-AAAAAAATATAAAAACGAAAATGACATA------ATCCTAATCAATTTTTAAAACATTTCTTTTAGATATTCTTGAAAATGTA--------AACGTAAA-GAT------AGTAGATATGTACATTCATGGC-GGTTATA--CTATGCTGGATAG-GAATAGGAGTGGGGGAAATACCATTTTATAAAGAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATATCCGGTCTAGTTGCAAATATACTTATTATAAACCAACCAACCGCTTTCTGGCTGTTTTGT--CTAT-CGCGTGTAA------TTTTTTATTGCTGTTTCTTTTTATTTCT-AAT-TTTCAACACATT-ACAACATGTTTCACAAATTGTAT----TTA-CAGTTTGTATGATATAGCTTTCAACAGTTATAAAAAGATTCTGTTTGGTCTCATCTGAACAATCCTCCAG-----TAACACTTGGTAATTTTCGGT------TATCTCCTATAAAAAAAAGTCGCAAAG-----C-TGATTGGATGCACGGAAGATTACGGACCGTTACGTT---ATA--TATATATGTACTCCGTCTACGACAACAGCGTCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGGAATACTATAGTTATACTGTA
gi|10 : ATTGCTGTTCCTTTTTAATTCA-ATT-TTTCAACACATT-ATAACATGGTTCACAAATTGTAT----TTA-CAGCATG----ATATAGTTTTCAACAGTTATAAAATTATTTTGTGAGGTATCATCTGAACAACCCTCAAG-----AAACACTTGTTTGTTTTCGGTCACTAGTATCTCTGATAACAAAATGTCGCTAAG-----C-TGATAGGATGCACGGAAAATTCCAAACCGTTTC--TTAAATA--TGTATACATACACCATCTGCGACAACAGCGTCCACA-----TAGGTTCAGATTCATTTCTTCTGGTTCTGTTGTACTAGCGAATGGTACAGTA
gi|11 : AAAATATTTACATTACAAATTA-TCA------CTCC-----------------------ATCT------ATAAAA-C-------TTTA--------A-AA-CAGGATGGT-TTGTTTATAAAA-CAGGATGTTATTATCGGATTCG---TTTCTGAAATATTCTGAGAA--------------A--TCAGATAAGCTTGGTGACCAT----GCAATATACATTCAAGTACCATGCATCCATGCACGCATCAATACGCGCACATGCTTAAATTATGATTAAAGATA---ATAATATATCATGGAAGTTAAGAATCATTGTGACATTGCATGAATATGTTGTTGATAACAA-AAACACGTTAATCAAA----AAAATAACAATACGTA----TATGCTAAATGTAAATACG--AGAAAA-AAA-CATATATCA--T-----ATGTATT-CAAAATTATG---TAAGTTTTGTTATC-TAAA-ATA-AATG--ATA--------TGT-AT--ACAATATGttgtaatttataaagttttaaaatgcaacaagtgcctcaattttttcatacctagttaaaaaactgggaggcccttaagggcaagggccttcctgggtctcaaagcagctacaggcc
gi|12 : gaTTTATTGCTGTTTCTTTTTATTTCA-A-T-TTTCAACATATT-ACA---TGCTTCACAAATTGTAT----TTG-CAACATGTATGGTATAGTTTGCAACAGTTATAAAACTATTTTGTTTGGTTTCATCTGAACAGCCCTACAG-----TAACATCCGTTTGTTTTCGGT------TATCTTCGATAACAAAATGTCGCAAAG-----C-TGATCGGATGCACGGAATATTCCGAACCGT---------------------G---------TGCGACAACAGTGTCCACA-----TAGGTTCAGATTCATT
gi|13 : GTA--------AA--TAAGCGGG------AGT-GCTATGTACATTCATGGCCAGTTATATACTTTATTGGATAG-GAATGGAAGTTGGGACAATACCATTTTATATAGAGTAGGTTTTGGGAAACCAAATTTGTTTTGTTTTTTTATTTCCGGCCTAGTTGCGAATCCACTTATTATA--TCAACCAATCGCTTTCTTACTGTTTTCTTAAAAT-TGCGTCCAACAAAG-TTTTTTTCTCTTGTTTCTTTTTACTT---AGTATTTCAA---ATTAACAACaatagtaatacagttttataatttatttagttttaaaatgcaacaaggatatttaatatagtgcctcaaatttgtttcgtacctagcccgaaaaatagggggataccggctttcctgggtctcagagtagctacgggcct
gi|14 : tAAAATATTCACATTATAAAGCA-TTA------CTCC----------------------CATCT------A--AAAACAGGATGTTTTATCTAT---ATAA-CAGGATGTT-TTATTTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGTGAATTTGAAAAA-A-A-A--TCAGAATAGCTTTGTGACATT----GCAATGCACATTCAAGTATCACGCATCCATGCACGCACCCATGTATGCACATGCT----------TTACA-ATA---ATAATATATCAC-GAAGTTAAGAATCATTGCAGC
gi|15 : TGTTTCCTTTTATTTCA-ATT-TTTCAGC-CGTT-ACAACATGTTTCACAAATTGTATACTATTGGCAGCATGTAT--TATAGCTTTCAACAGTTATGAAACAAAATTGTTCGGTTTCATCTGAACAGCCCTCTAGAAGCCTAGCATTCGCTTGATTTCGGT------TATCTCCGACAACAAAACGTCGCGAAACTGATC-TGATCGGATGCACGGAAAATTCCGAACCGTTAC--T---A-A--TAT
gi|16 : ---ATA--TATATACACACTCCGTCTGCGGCAACAACGTCCACA-----TAGGTTTAGATTCATTTCTTGTGGTTCTGTTGTAATAGGGAATGTTATCATAATGCAGTAcagtacatt
gi|17 : GAAAATATTCACATTACAAAAAAATCA------CTCCAATCTGTTAACACAAAATGTTTTATCTGAAAAAA--AAA-CGGGATGTTTTATCT-TTAAA-AA-CAGGATGTTCTTATCTATAA---CTGGGTGTTTTTATCGGATCCG---TTT--AAAGTATTCTTGGAATTTGAAAAA-T-A-A--TCAGATGAGATTGGTGACATT----GCAATACACATTCAAGTATCTTGCATACATGCACttataatttgtttagttttaaaatgcaatatggatgttcaatatagtgtctcaaaatttgttcgtacctagcacgaaaaacagggagtgaccggcttccctgggcctcagagtagctacaggcctgcg
gi|18 : --T---ATA--TATATACGTAATTCTCCTGCAACAACAGCGTCTATA-----GGTTTTCAGATTCATTTCCTGTGATTCCGTTGTACTGAGGAATGATATGGCGATACAGTatg
gi|19 : GAAAATATTCACATTATCACT---TTGGGGAGTCTCC----------------------CATCT------A--AAA-AA-----TTTTA--------A-AA-CAGGAAGAT-TTATCTATAATA-CAG--TATTT-----------G---TTTCTAAAATATTCTGGGAATTGGAAAAA-A-A-A--TCAGATAAGCGTGGTGACATT----GCAATACACATTCATGTATCACACATCCATGCATGCA--CATGCCCAT-CATGATTAA-------TTAAG-ATA---ATAATATATCtttataatttatttactttaaaatgaaacacatatttttcgtactaatagcccgaaaaacagggaggccggcacagggaggcatcggcctcccgctgtgcctcagagtagctacgggcct
gi|2 : ttgGAATTTGAAAAAGA-A-A--TCAGATAAACTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCACGCACCCATGCACGCACATACT----------TTACA-ATA---ATAATATATCACGGAAGTTAAGAATCATGGCAGCACTGTATGTATATGGTGTTGATCAAAATACATACGTGACTCAAATCTGAAAATAATAATACGTATAATTATGCTAAATGTAAATACGAAAA--AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--ATTAATAT-TTTTTTTATAAACAATATGTTAAGATGTGTTTATTTCTAATAAT----AGTAATCTCCACGTCCGGATAGCTCACATATCTAAGC-GA----CTTTAGAAAGTCGTTTATATCCATGTAAGCATCAGTATGAAATATTAAGTTTAATT-ATT----GATGCATTAATTGTATGTAAACCTTACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGCAAATCC
gi|2 : TTTCCTAAATACTCTGGGAATTTGAA---AATAAA--TCAGTTAAGCTTGGTAACATTGCAATATACATTCAAGTGTGTAT-TACTACCCA-TA-GAAATAGAATAAGATACAATATTGAGATGTTGTGAGGTAGAAATA-ATGA-TACAATCATTCGCCATGTT-AAAAATGTTTTTGTTTT----TTTTCTGACTTCACTGCAAAAAA-AAACAAC--AGGTGTTTGAGGAATTTGTG--ATAATAATGTAAAAATGAAAATGACATA------ATCGTAATCAATTTTTAAAACATTTGTTTTAGATATTCTTGAAAACGTA--------AA-GTAAA-GAT------AGTAAATATGTACATTCATGG-CAGTTATA--CTATTTTGGAAAACAAATGGGAGTGGGGAAAATACCATTTTATATAAAGTAGATTTTGGGCAACCAAATGTG------CTTTTCATGTCCGATCTAGTTGCAAATCCACATATTATA----AACCAACCGCTATCTGGCTGTTTTGT--TAAT-CGCGTGTAA------TCTTTAATTGCTGTTTCTTTTTCTTTCA-AGT-TTTCAACACATT-ACAACATG-TTCAAAAATTGTAT----TTA-CAGCATGTATGATATAGCTTTGAACAGTTATAAAAAGATTTTACTTGGTCTCAACTGAACAATCCTCCAG-----TAACACTCGGTAATGTTCGAT------TATCTCCGGTAACAAAA-GTCACAAAG-----CTTTTTTGAATGCACGG----TT---A--CGTTA---T---ACAATTATATA--TACTCCACCTGCGACAACAGCATCCACA-----GAGGTTCAGGTTAGATTCTTGCGATTCTGTTTTACTAGGGA-----ACAGTAACACTGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcctaaatactctgggaatttgaaaataaatcagttaagcttggtaacattgcaatatacattcaagtgtgtattactacccatagaaatagaataagatacaatattgagatgttgtgaggtagaaataatgatacaatcattcgccatgttaaaaatgtttttgttttttttctgacttcactgcaaaaaaaaacaacaggtgtttgaggaatttgtgataataatgtaaaaatgaaaatgacataatcgtaatcaatttttaaaacatttgttttagatattcttgaaaacgtaaagtaaagatagtaaatatgtacattcatggcagttatactattttggaaaacaaatgggagtggggaaaataccattttatataaagtagattttgggcaaccaaatgtgcttttcatgtccgatctagttgcaaatccacatattataaaccaaccgctatctggctgttttgttaatcgcgtgtaatctttaattgctgtttctttttctttcaagttttcaacacattacaacatgttcaaaaattgtatttacagcatgtatgatatagctttgaacagttataaaaagattttacttggtctcaactgaacaatcctccagtaacactcggtaatgttcgattatctccggtaacaaaagtcacaaagcttttttgaatgcacggttacgttatacaattatatatactccacctgcgacaacagcatccacagaggttcaggttagattcttgcgattctgttttactagggaacagtaacactgtattacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|20 : gaatttgaaaaagaaatcagataaacttggtgacattgcaatacacattcaagtatcacgcatccatgcacgcacccatgcacgcacatactttacaataataatatatcacggaagttaagaatcatggcagcactgtatgtatatggtgttgatcaaaatacatacgtgactcaaatctgaaaataataatacgtataattatgctaaatgtaaatacgaaaaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctaaaatagaagctatagcatttgtatacaatatgttctatgtttgtattttaatatattaatattttttttataaacaatatgttaagatgtgtttatttctaataatagtaatctccacgtccggatagctcacatatctaagcgactttagaaagtcgtttatatccatgtaagcatcagtatgaaatattaagtttaattattgatgcattaattgtatgtaaaccttactacataatcatgttttgattatccgtccaatattacaaatagtttagcaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGATAAGCTTGGCGACATTGCAATATACATTTATGTATGTAT-CACCACCCA-TC-AAAATAAAATTAGATACACAATCGAGATGTAGTAAAGCGGAAATACACAACTACT---ATTCGCCCTATT-AAAAATAGGGTTGATGT----TT---TAACTTCACTGC-AAAAA-Attacgatttatttagttttaaaatgaaaaaaaaaatatagtg
gi|22 : GAAAGTATTCACATTCTAAATCA-TTA------CTCC----------------------AATCT------A--AAA-caaaaa
gi|3 : gAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAAACAGGATGTTTTATCTAT---ATAG-CAAGATGTT-TTATCTATAAAAACAGGATGTTTTCCTAGAATCCG---TTTCTAAAGTGTTCTTGGAATTTGAAAAA-A-ATA--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAAGTATCACGCATCCATGCATGCACCCATGTACGCACATGCT----------TTACA-ATA---ATTATATATCACGGAAGTTATGAATCAGGGCAGCGCTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCCAAACTGAAAATAACAATACGTATAACTATGCTAAATGAAAATACG--AG--AA-AAAACATATATCAGGTTGACAACGTAAT-CAAAAGTGTG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAGCAT---TTGT-AT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAAAATAA-ATTTCATATCAACAATATAATAAGATGTGTTTGTTTCTAATATG----AGTAAACTCCACGTCCGGACAGCCCACATATCTAAGC-GG-GGTCTTTAGAAAGT---TTATATCCATGTAATCATCCGTATGAAATATCAGGTTTAATTTATTTAGTGATGCATTAATTTTATGTAAACTAAACTAC-ATAATCATGTTTTGATTATCCGTCCAATATTACAGATAGCGTAGCAAATC-CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTAGTTTTTAAAATACTCTGGAAATTTGAA---AAAAAAA-TCAGTTAAGCTTGGTGACATTGCAATATACATTCAAGTGTGTAT-TACCACCCA-TG-AAAATGAAATAAAATACAATATCAAGATGTAGTGAGGCCGAAATA-ACGA-TACTGTCATTCGCAATGTA-AAAAATGTTGTTGATGTTCAATT---TTTTTTCACTGC-AAAAT-ACAT-CC--AGGTTTCTGAGGAATTCGacg
gi|4 : GAAAATATTCACATTATAAATCA-TTA------CTCC----------------------CATCT------A--AAA------------------------A-CAGGATGTT-TTATCTATAAAAACAGGATGTTTTAATCAAATCAG---TT--------ATTCTTTGAATTTGAAAAA-A-A-AAATCAGATAAGCTTGGTGACATTCAGTGCAATACACATTCGAGTATCGTGCATCCATGCATGCACCTATGCACGCACATGCT----------TTACA-ATAATAATAATATATCAGGGAAGTTAAGAATCGTGACAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTTAAAACTGAAAATAACAATTAGTACAATTATGCTTAATGTAAATACT--AGA-AA-AAA-CATATATCAGGTTGACAACGTTAT-CAAAATTATG---TATGTTTTGTTATC-TGAA-ATA-GAAGCTATAGCAT---T------------------------------TGTTCGCATTTTAATATAAAAAAATAA-ATTTCATATCAACAATATGTAAAGATGTGTTTATTTCTAATATG----AGTAAACTCCATGTCCGGCCAGCCCACATATCTAAAC-GA----CTTTAGAAAGTCGTTTATATCCGTGTAAGCATCAGTATGAAATATTAGGTTTGATT-ATT----GATACATTAATTTTTTTTAAACTTAACTACTACAGTCATGTTTTGATTATCCGTCCAATATTACAAATAGTTTAGAAAATCC
gi|4 : tgTTTCTAAAATACTCTGGGAATTTGAAGAAAAAAAAA-TCAGTTAAGCTTGATGACATTGCAGTATACATTGAAGTGTGTTT-TGCCACCTA-TA-AAAACAAAATTAGATACAAAATCGAGATGTAGTGAGGCTGAAATA-ATGA-TACTGTCATTCGCCATGTTAAAAAATGTTGTTGATGT----TT---TAACTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttctaaaatactctgggaatttgaagaaaaaaaaatcagttaagcttgatgacattgcagtatacattgaagtgtgttttgccacctataaaaacaaaattagatacaaaatcgagatgtagtgaggctgaaataatgatactgtcattcgccatgttaaaaaatgttgttgatgttttaact
gi|5 : tggaaaatattcacattataaatcattactcccatctaaaaacaggatgttttatctataaaaacaggatgttttaatcaaatcagttattctttgaatttgaaaaaaaaaatcagataagcttggtgacattcagtgcaatacacattcgagtatcgtgcatccatgcatgcacctatgcacgcacatgctttacaataataataatatatcagggaagttaagaatcgtgacagcactgcatgtatatgttgttgataaaaatatatacgtgacttaaaactgaaaataacaattagtacaattatgcttaatgtaaatactagaaaaaacatatatcaggttgacaacgttatcaaaattatgtatgttttgttatctgaaatagaagctatagcatttgttcgcattttaatataaaaaaataaatttcatatcaacaatatgtaaagatgtgtttatttctaatatgagtaaactccatgtccggccagcccacatatctaaacgactttagaaagtcgtttatatccgtgtaagcatcagtatgaaatattaggtttgattattgatacattaattttttttaaacttaactactacagtcatgttttgattatccgtccaatattacaaatagtttagaaaatccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTCAAAACTGAATATAACACTACGTATA-TT---CTAAATGTAAATACG--AG--AA-AAA-CATATATTA---T----ATGT-AT-TAAAATTATG---TAAGTTTGGTTATC-TAAA-ATA-AATGCTAT--C-T---TTG-------CAATATGT--------TCTA-TGTTTGTATTTTAATAT--AAACATAA-ATTTTATATTAACAATATGTAAAGATGTGCTTATTTTTTATATG----AATAAATTCAACGTCTGGACAGCCCATATATCTAAGCGGG-G-CCTTCAGAAAGTCGATTATATCCATGTATGCGTCAGTAAGAAATATTAGCTTTAATA-TTT----GATGCATT-ATTTTATGTAAACTTAACTATTACATTCATGTTTTGATTATTGGTTCAATATTATAAATAGTGTAACAATTCC
gi|5 : AGTTTCTAAAATATTCTGGGAATTTGAA---AATAAAA-TCACATAAGCTTGGTGACATTGCAAT-----TTTA-GTATGTAAACACCACCCAACATAAAATAAAGTTGGATATAATAACGAGATGTAATAAGGCCGAAATA-AAGA-TATTAACAT----AA-----AAAAATGTTGCTGATGT----TT---TAA------------------A--AC--AGGGCTCTGAGGAATTTTAGAGAAAAAAATGTAAAAATGAAAATGACATAGATCCGATTCTAATTTGTTTTTAAGACATTTGTTTTAGATTTTCCTGAAAACGTT--------AACGTAAAT-AT------ACTATATATGTACATTCATGGCCAGTTATA--CTATATTTGATAG-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttctaaaatattctgggaatttgaaaataaaatcacataagcttggtgacattgcaattttagtatgtaaacaccacccaacataaaataaagttggatataataacgagatgtaataaggccgaaataaagatattaacataaaaaaatgttgctgatgttttaaaacagggctctgaggaattttagagaaaaaaatgtaaaaatgaaaatgacatagatccgattctaatttgtttttaagacatttgttttagattttcctgaaaacgttaacgtaaatatactatatatgtacattcatggccagttatactatatttgatag
gi|6 : ctcaaaactgaatataacactacgtatattctaaatgtaaatacgagaaaaacatatattatatgtattaaaattatgtaagtttggttatctaaaataaatgctatctttgcaatatgttctatgtttgtattttaatataaacataaattttatattaacaatatgtaaagatgtgcttattttttatatgaataaattcaacgtctggacagcccatatatctaagcggggccttcagaaagtcgattatatccatgtatgcgtcagtaagaaatattagctttaatatttgatgcattattttatgtaaacttaactattacattcatgttttgattattggttcaatattataaatagtgtaacaattccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAGACATTTATTTTAGATTTTCCTGAAAACAAACCAAGACCAATGTAAATTATTGCTGGAGTAGATATGTACATCCATTATCAGATATA--CTTTATTGGATAG-GAATGGGAGTGGGCCAC-TACCATTTTATATAGAGTAGGTTTTTGGCAACCAAATTTG------TATTTCATTTGCGGCCTAGTTGCAAATCCACTTATTATA--TCAACCAACCACTTTCTCATTGTTTCTT--AAATACGCGTGCAACAAAGATTTTTTATTGAAGTTTCTTTTTATTTAA-AAA-TCTCAACTTATT-ACAACATATTTCACAAATTGCAT----TTT-CAGCATGTATGATATAGCTTTCAACAGTAATAAAAAGA-TTTGTTTTGTCTCA----A----------AG-----TAACAC-------------------------TCTGATAACAAAAAGTCGCTAAA-----C-TGAATGGATGCACAGAAAATTCCAA------AC--T---AT-------TACGTACTCGGTCTGCGACAAAAGCATTCACATAATTGA-GTTCAGATTCATTTC--GTGGTTACATTGTAATAGGGAATGCTATAATAATAC
gi|7 : atatattaaagagtaacaaattctaaggctgcgttcagttcaacacCA-TCA------CTCC----------------------CATCTGTA---A--AAG-CAGCATGTTTTATCTAT---A-AAACTGGATGTT-TTATTTATAAAAACAGGATGTTTTTATCGGATCCGCTGTTTCTTAAATATTCTGGAAATTTGGAAAA-ATA-A--TCAGATAAGCTTGGTGACATT----GCAATACACATTCAATCATCACGTGTTCATGTACGCATCCATGCACGCACATGCT----------TT-----TC---GTGA---ATCA---AAACTGAAAAT------AACA--------ATATGTTTATGCTAA------ATACG------AAAA---AAAACACGAAACCATATAATTAT----AATACATATA--------AA-AAT-TATGTAT--GTTT-----TGTTATACAA---TATGTTCTATG-TTTG-TATT-T-TA-ATACGA--CTTTTTTAT---TTAT-ATTAACAATATGTTAAGATTGTTTATTGTTTATGTTTTAGTAagaacatataatacaaaatttgttttgttttaaaatgtgacaaggatttaaatatagtgcctcaaattttgtttgtacctagtccgaaaaacctgggcctcagattagctatgggcctg
gi|7 : CGTGAATCAAAACTGAAAATAACAATATGT----TTATGCTAAAT------ACG--AA--AA-AAA---------------ACA--------CGAAACCATA---TA------ATTATAATACATATA-AAAATTAT-GTATGTTTTGTTAT--ACAATATGT--------TCTA-TGTTTGTATTTTAATAC--GACTTTTTTATTT-ATATTAACAATATGTTAAGAT-TGTTTATTGTT--TATGTTTTAGTAACCTCCACATCCTGACAGCCCACATGTCTAAGT-GGAG-CCTTCAGGAAGTCGTTGCTATCCCTGTATGCGTCTGTACGAAATATAAGCTTTAATT-ATT----GATGCATTAATTTTATATAAAATTAACTACTACAATCATGTTTTGATTATCCGTCCAATAT---AAATAGAGTAACAGAacctccacatcctgacagcccacatgtctaagtggagccttcaggaagtcgttgctatccctgtatgcgtctgtacgaaatataagctttaattattgatgcattaattttatataaaattaactactacaatcatgttttgattatccgtccaatataaatagagtaacaga
gi|8 : catcactcccatctgtaaaagcagcatgttttatctataaaactggatgttttatttataaaaacaggatgtttttatcggatccgctgtttcttaaatattctggaaatttggaaaaataatcagataagcttggtgacattgcaatacacattcaatcatcacgtgttcatgtacgcatccatgcacgcacatgcttttGAAAATATTCACATTATGAATCA-TAA------CTCC----------------------CGTCT------A--AAA------------------------A-CAGGATGTT-TTATCTATAAAAACAGGATGTTTTCATCGAATCCG---TTTCTAAAGTATTCTGGGAATTTGAAAAT-A-A-A--TCAGATAAGATTGATGACATT----GCAATACACATTCAGGTATCACGCATTCATGCA-----------A-GCACATGCT----------TTACA-ATA---ATAATATATCACAGAAGTTACGAATCATGGCAGCACTGCATGTATATGTTGTTGATAAAAATATATACGTGACTCAAAA-------TAACAATACGTATAATTATGCTAAATGTAAATACG--AG--AATAAA-CATATATCAGGTTGACAACGTAAT-CAAAGTTATG---TATGTTTTGTTATC-TAAA-ATA-GAAGCTATAATAT---TTGT-AT--ATAATATGT--------TCTA-TGTTTGTTTTTTAATAT--AAAAATAA-ATTTCATATCAACAATATGTTAAGATGTGTTTAT
gi|9 : tgGCGTGTAA------TTTTAAATTGCTGTTTCTTTTTTTTTTTTAAT-TTTCAACACATT-GCCACATGTTTCACAAATTGTAT----TTA-CAGCATGTATGGTATAGCTATCAACAGTTATAAAAATATCTTGTTAGGTCTCATCTGAACAATCTTCCAG-----TAGCACTCGGTAACTTTCGGT------TATCTCCGATAACAAAAAGTCGCGAGG-----C-TGATTGGATGCACGGAAGATTCCGAA-CGTTAC--G---TTA--TATATATGTACTTCGCCTACGACAACAGCATCCACA-----GAGGTTCAGATTAATTTCTTGTGGTTCTGTTGTACTAGGAAAGATTATAATAATACTGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ACCTAGCCCGAAAAACAGGGAGTGTGGTGCCTCAGAGTAACTATGGGCCTGATA