lowQualScore : 1111 111 2222222222222222222 1 44444444444444444444444444 88888888888 22
lowQualScore : 1111 333 3333333333333333333 2 1 3 3 1 55555555555555555555555555 3 3 3 99999999999 3 3 555 0 33 3 8 0 9
lowQualScore : .... ... ................... . . . . . .......................... . . . ........... . . ... . .. . . . .
lowQualScore : 7777 444 8888888888888888888 3 4 0 5 7 66666666666666666666666666 1 3 3 11111111111 1 1 444 8 55 1 0 2 9
consensus : GACTAAAGTACACG----ATCTTCCATAAATGTAAGAT-------------------CTGATGACGACCTATTCAAATTCNTCTTCTNGNN----TNACCG------------GATTT-CCAATATCGCTAT-TTTT-AG---CA--AA-CT-ATT-T---TTATTTCAA-CCAATCAGAGTACTCGTTTCAACAGCCGTTCGGCATAACCTTC
Reference ( gi|8 ) : GACTAAAGTACACG----ATCTTTCATAAATGTAAGAT-------------------CTGATGGCGATCCATTCGAATTCATCTTCTTGTT----TTATCG------------GATTT-CCAATATCGCTAT-TTTT-AGATCCACCAATCT-ATT-T---TTAGATCAA-CCAATCAGAGGACTCGTTTCAACAGCCGTTTGGCTTAACCTTC
gi|6 : GACTAAAGTACACGCACGATCTTCCATAAATGTAAGAT-------------------CTGATGGCGATCCATTCGAATTCATCTTCTTGTT----TTATCG------------GATTT-CCAATATAGCTAT-TTTT-AGATCCACCAAGCT-ATT-T---TTAGATCCG-CCAATCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTT
gi|7 : ctGACTAAAGTACACG----ATCTTCCATAAATGTAAGAT-------------------CTGATGGCGATCCATTCGAATTCATCTTCTTGTT----TTATCG------------GATTT-CTTATATCGCTA--TATA-AGATCCACCAAGCT-ATT-T---TTAGATCCA-CCAGTCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTTC
gi|5 : tctGACTAAAGTACACG----ATCTTCCATAAATGTAAGATCTGATGGCGATCCATAGATCTGATGGCGATCCATACAAATTCATCTTCTTGTT----TTATCG------------GATTT-CCAATATCGCTAT-TTTT-AGATCCACCAAGCT-ATT-T---TTAGATCCA-CTAATCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTTC
gi|9 : ctGAGTAAAGTACACG----ATCTT-CTTCAATGTAAGAT-------------------CTGATGATGACCTATTCAAATTCTTCTTCTGGAA----TAACTG------------GATTT-CCATTATCGCTAT-TTT-----------AAGCT-ATT-C---TTATTTCCA-CCATTCAGAGAACTCGTTTCAACAGCCATTTGGCATAACCTTC
gi|10 : ctGACTAAAGTATATG----ATCTTCC-TAAATGTAAGAT-------------------CTGATGACAATCTATTTAAATTCTACTTCTAGAA----TAACTG------------GATTT-CTAATATCACTAT-TTTT-AG----------CT-ATT-T---TTATTTCAA--CAATCAGAGTACTCATTTCAATAGCTTTTAGTCATAACTT
gi|18 : tGACTAAAGTACACG----ATCTCCC-TAAATGTAAGAT-------------------CTGATGACGACCTATTTAAATTCTCCTTTTAGTA----AAACTG------------GATTT-CCAATATTGCTAT-TTTA-AG---CA--------ACT-T---TCATTTCAA-CCAATCAc
gi|14 : tctGACCAAAGTACACGGT--ATCTTTCATAA-TGTAAGAT-------------------ATGATGACGTCCTATTCAAA---AACT-----------------------------GATTTTCCAATATCGCTTT-TTTTTAG------CAATTTTATT-T---T------AA-ACAACCAGAGTACTCGTTTCAACAGCTGTTCAGTATAAC
gi|17 : tctGATTAAAGTACACG----ATCTTCTA-AAATGTAAGAT-------------------CTGATAATGACCTGTTCAAA---GTCTTCTT-TTAAAATAACTG------------GATTT-CCAAT
gi|11 : ctCTAAAGTACACG----ACCTTCC-TAAATGTAAGAT-------------------CTGATGACGACCTATTCAAATTCTTCTTCTAGAA----TAACTG------------TATTT-CAAATATCGCTAG-TTTT-AG----------CT-ATTAT---TTATTTCAA-CCAATCAGAGTACTCATTTTAACAGCCGTTTGGCATAACTTTtttcaacaagagtactcattacaacagtcgttggcaca
gi|13 : CTTAAGTACACG----ATCTTCC-TAAATGTAAGAT-------------------CTAATGACAACCTACCCAAATTCTTATTCTCGAA----CAATTG------------GATTT-CCGATATCGCTAT-TTTT-AG----------CT-ATT-T---TCATTTCAA-TCAATCAGAGTA-TCATTTCAACAG-CGTTCGGCATAACC
gi|12 : CTAAA-TACACG----ATCTT-CTTAAATGTAAGAT-------------------CCGGTGACGACATATTCAAATTCTTCTTCTAGAA----TGACTG------------GAATT-CCACTATC-CTAC-TTTT-AG----------TT-ATT-TGTGTTA---CAA-CTAATCAGAGTATTTATTTCAACAGCCGTTCGGCATAACCTTC
gi|16 : tCTAAAGTACACG----ATC-TTCGTAAATATAAGAC-------------------CTGATGACGACATATTCAAATTC----------T----TTAT-GTAGAAAAAAAAAGATTT-CCAATATCGCTATATTTT-AG-----------T-ATT-T---TTATTTCAA-CCAATCAAAGTAC
gi|15 : cAT-------------------CTGATGAAGACCAATTCAAATTT---TTCTT-----------------------------T-CCAACA-CACTAT-TTTT-AGCTTTA---AT-T-ATT-T---T------AA-CTAATGGGAATACTCGTTTCAACAGCTGCTCCCCATAACCTT
gi|19 : tctgactgaaatcagtgatcaT-ATT-T---TTA--TCAAACCAATCAGAGTACACGTTTCATCAGCTGTTCGGCATAACCTT
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): AAAATGGTGTCAATTGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACAAGAGCAAAGAACAGTTTTCGATGCTGTATGGTCAGGGAAAGACTGTATCGGTGTTTTGCCGACAGGTTTTGGAAAATTGCTTCCGTATCAAGTGCTGTCTTTGGTAAACCGCATGTGGAATAAGTGGAATAGAACTAGAACACGCGTGTAAATCACTATGCGAAAAT
Unaligned ( gi|2 ): AAATGGCGTCAATTGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAATCAGAGCAAAGACCACTTCGTCAGCTGCTCTAAAACCAGATATTTTTCAATTTACGGAACGTAATTTTATTTCCGCGTAGCCATGATGCGGTCGTCATAAGAACTAGAACACGCGTGTAAATCACTATGCGAAAAT
Unaligned ( gi|3 ): ATGGCGTCAATAGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACCAAAGCAAAGACCACTTCGTCCGCTGCTCTAAAACCAGATCTTTTACAATTTATGGAACGTAATTTTATTTCCGCGTAGCCATGATGCTGTCGTTATAAGAACTAGAACACGCGTGTAAATCACTATGCAAAAAT
Unaligned ( gi|4 ): ATGGCGTCAATTGACGGAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACCAGAGCAAAGACCACTTCGTCCGCTGCTCTAAAACCAGATCTTTTACAATTTACGGAACGTAATTTTATTTCTGCCTAGCCATGATGCGGTCGTCATAAGAACTAGAACACGCGTGTAAATCACTATACGAAAA
Alignments
lowQualScore : 1111 1 2222222222222222222 11111 55555555555
lowQualScore : 0000 4 2222222222222222222 2 3 00000 2 5 6666 2 88888888888 2 33 2 2 3
lowQualScore : .... . ................... . . ..... . . .... . ........... . .. . . .
lowQualScore : 8888 8 1111111111111111111 0 0 11111 7 7 1111 9 44444444444 7 77 8 7 2
consensus : GACTAAAGTACACG----ATCTTCCATAAATGTAAGA-------------------TCTGATGACGACCTATTCAAATTCTTCTTCTNG-AATAACCGGATTTCCAATATCGCTAT-T----TTT-AG------CAA-CTATT-T--TTATTTCAA-CCAATCAGAGTACTCGTTTCAACAGCCGTTCGGCATAACCTTC
Reference ( family-9301 ) : GACTAAAGTACACG----ATCTTCCATAAATGTAAGA-------------------TCTGATGACGACCTATTCAAATTCNTCTTCTNG-NNTNACCGGATTTCCAATATCGCTAT-T----TTT-AG------CAAACTATT-T--TTATTTCAA-CCAATCAGAGTACTCGTTTCAACAGCCGTTCGGCATAACCTTC
gi|10 : GACTAAAGTATATG----ATCTTCC-TAAATGTAAGA-------------------TCTGATGACAATCTATTTAAATTCTACTTCTAG-AATAACTGGATTTCTAATATCACTAT-T----TTT-AG----------CTATT-T--TTATTTCAA--CAATCAGAGTACTCATTTCAATAGCTTTTAGTCATAACTT
gi|11 : tCTAAAGTACACG----ACCTTCC-TAAATGTAAGA-------------------TCTGATGACGACCTATTCAAATTCTTCTTCTAG-AATAACTGTATTTCAAATATCGCTAG-T----TTT-AG----------CTATTAT--TTATTTCAA-CCAATCAGAGTACTCATTTTAACAGCCGTTTGGCATAACTTTc
gi|12 : CTAAA-TACACG----ATCTTCT-TAAATGTAAGA-------------------TCCGGTGACGACATATTCAAATTCTTCTTCTAG-AATGACTGGAATTCCACTATC-CTAC-T----TTT-AG------T----TATT-T--GTGTTACAA-CTAATCAGAGTATTTATTTCAACAGCCGTTCGGCATAACCTTC
gi|13 : tCTTAAGTACACG----ATCTTCC-TAAATGTAAGA-------------------TCTAATGACAACCTACCCAAATTCTTATTCTCG-AACAATTGGATTTCCGATATCGCTAT-T----TTT-AG----------CTATT-T--TCATTTCAA-TCAATCAGAGTA-TCATTTCAACAG-CGTTCGGCATAACC
gi|14 : GACCAAAGTACACGGT--ATCTTTCATAA-TGTAAGA-------------------TATGATGACGTCCTATTCAAA----------------AACTGATTTTCCAATATCGCTTT-T----TTTTAG------CAA-----T-T--TTATTTTAA-ACAACCAGAGTACTCGTTTCAACAGCTGTTCAGTATAAC
gi|15 : tctA-------------------TCTGATGAAGACCAATTCAAATTTTTC-----------------TTTCCAACA-CACTAT-T----TTT-AG------C------TT-TAATTATTTTAA-CTAATGGGAATACTCGTTTCAACAGCTGCTCCCCATAACCTT
gi|16 : tctgactgaaatcagtgatcaCTAAAGTACACG----ATCTTC-GTAAATATAAGA-------------------CCTGATGACGACATATTCAAATTCTTTATGTAGAAAAAAAAAGATTTCCAATATCGCTATAT----TTT-AG-----------TATT-T--TTATTTCAA-CCAATCAAAGTAC
gi|17 : cGATTAAAGTACACG----ATCTTCTA-AAATGTAAGA-------------------TCTGATAATGACCTGTTCAAAGTCTTCTTTTAA-AATAACTGGATTTCCA--------AT-T----TTC-AA------CAA---------------------------GAGTACTCATTACAACAGTCGTT-GGCACA
gi|18 : ctGACTAAAGTACACG----ATCTCCC-TAAATGTAAGA-------------------TCTGATGACGACCTATTTAAATTCTCCTTTTAG-TAAAACTGGATTTCCAATATTGCTAT-T----TTA-AG------CA----ACT-T--TCATTTCAA-CCAATCA
gi|19 : tctTATT-T--TTAT--CAAACCAATCAGAGTACACGTTTCATCAGCTGTTCGGCATAACCTT
gi|5 : GACTAAAGTACACG----ATCTTCCATAAATGTAAGATCTGATGGCGATCCATAGATCTGATGGCGATCCATACAAATTCATCTTCTTG-TTTTATCGGATTTCCAATATCGCTAT-T----TTT-AGATCCACCAAGCTATT-T--TTAGATCCA-CTAATCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTTC
gi|6 : ctGACTAAAGTACACGCACGATCTTCCATAAATGTAAGA-------------------TCTGATGGCGATCCATTCGAATTCATCTTCTTG-TTTTATCGGATTTCCAATATAGCTAT-T----TTT-AGATCCACCAAGCTATT-T--TTAGATCCG-CCAATCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTT
gi|7 : ctGACTAAAGTACACG----ATCTTCCATAAATGTAAGA-------------------TCTGATGGCGATCCATTCGAATTCATCTTCTTG-TTTTATCGGATTTCTTATATCGCTATATAAGATCC-AC------CAAGCTATT-T--TTAGATCCA-CCAGTCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTTC
gi|8 : tctGACTAAAGTACACG----ATCTTTCATAAATGTAAGA-------------------TCTGATGGCGATCCATTCGAATTCATCTTCTTG-TTTTATCGGATTTCCAATATCGCTAT-T----TTT-AGATCCACCAATCTATT-T--TTAGATCAA-CCAATCAGAGGACTCGTTTCAACAGCCGTTTGGCTTAACCTTC
gi|9 : GAGTAAAGTACACG----ATCTTCT-TCAATGTAAGA-------------------TCTGATGATGACCTATTCAAATTCTTCTTCTGG-AATAACTGGATTTCCATTATCGCTAT-T----TT-----------AAGCTATT-C--TTATTTCCA-CCATTCAGAGAACTCGTTTCAACAGCCATTTGGCATAACCTTC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAAATGGTGTCAATTGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACAAGAGCAAAGAACAGTTTTCGATGCTGTATGGTCAGGGAAAGACTGTATCGGTGTTTTGCCGACAGGTTTTGGAAAATTGCTTCCGTATCAAGTGCTGTCTTTGGTAAACCGCATGTGGAATAAGTGGAATAGAACTAGAACACGCGTGTAAATCACTATGCGAAAAT
Unaligned ( gi|2 ): AAATGGCGTCAATTGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAATCAGAGCAAAGACCACTTCGTCAGCTGCTCTAAAACCAGATATTTTTCAATTTACGGAACGTAATTTTATTTCCGCGTAGCCATGATGCGGTCGTCATAAGAACTAGAACACGCGTGTAAATCACTATGCGAAAAT
Unaligned ( gi|3 ): ATGGCGTCAATAGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACCAAAGCAAAGACCACTTCGTCCGCTGCTCTAAAACCAGATCTTTTACAATTTATGGAACGTAATTTTATTTCCGCGTAGCCATGATGCTGTCGTTATAAGAACTAGAACACGCGTGTAAATCACTATGCAAAAAT
Unaligned ( gi|4 ): ATGGCGTCAATTGACGGAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACCAGAGCAAAGACCACTTCGTCCGCTGCTCTAAAACCAGATCTTTTACAATTTACGGAACGTAATTTTATTTCTGCCTAGCCATGATGCGGTCGTCATAAGAACTAGAACACGCGTGTAAATCACTATACGAAAA
Alignments
lowQualScore : 1111 1 2222222222222222222 66666666666
lowQualScore : 0000 4 2222222222222222222 0 3 88888 2 5 6666 2 00000000000 2 33 1 2 3
lowQualScore : .... . ................... . . ..... . . .... . ........... . .. . . .
lowQualScore : 8888 8 1111111111111111111 1 0 99999 7 7 1111 9 66666666666 7 77 2 7 2
consensus : GACTAAAGTACACG----ATCTTCCATAAATGTAAGA-------------------TCTGATGACGACCTATTCAAATTCTTCTTCTNG-AATAACCGGATTTCCAATATCGCTAT-T----TTT-AG------CAA-CTATT-T--TTATTTCAA-CCAATCAGAGTACTCGTTTCAACAGCCGTTCGGCATAACCTTC
Reference ( family-9301 ) : GACTAAAGTACACG----ATCTTCCATAAATGTAAGA-------------------TCTGATGACGACCTATTCAAATTCTTCTTCTNG-AATAACCGGATTTCCAATATCGCTAT-T----TTT-AG------CAA-CTATT-T--TTATTTCAA-CCAATCAGAGTACTCGTTTCAACAGCCGTTCGGCATAACCTTC
gi|10 : GACTAAAGTATATG----ATCTTCC-TAAATGTAAGA-------------------TCTGATGACAATCTATTTAAATTCTACTTCTAG-AATAACTGGATTTCTAATATCACTAT-T----TTT-AG----------CTATT-T--TTATTTCAA--CAATCAGAGTACTCATTTCAATAGCTTTTAGTCATAACTT
gi|11 : tCTAAAGTACACG----ACCTTCC-TAAATGTAAGA-------------------TCTGATGACGACCTATTCAAATTCTTCTTCTAG-AATAACTGTATTTCAAATATCGCTAG-T----TTT-AG----------CTATTAT--TTATTTCAA-CCAATCAGAGTACTCATTTTAACAGCCGTTTGGCATAACTTTc
gi|12 : CTAAA-TACACG----ATCTTCT-TAAATGTAAGA-------------------TCCGGTGACGACATATTCAAATTCTTCTTCTAG-AATGACTGGAATTCCACTATC-CTAC-T----TTT-AG----------TTATT-T--GTGTTACAA-CTAATCAGAGTATTTATTTCAACAGCCGTTCGGCATAACCTTC
gi|13 : tCTTAAGTACACG----ATCTTCC-TAAATGTAAGA-------------------TCTAATGACAACCTACCCAAATTCTTATTCTCG-AACAATTGGATTTCCGATATCGCTAT-T----TTT-AG----------CTATT-T--TCATTTCAA-TCAATCAGAGTA-TCATTTCAACAG-CGTTCGGCATAACC
gi|14 : GACCAAAGTACACGGT--ATCTTTCATAA-TGTAAGA-------------------TATGATGACGTCCTATTCAAA----------------AACTGATTTTCCAATATCGCTTT-T----TTTTAG------CAA-----T-T--TTATTTTAA-ACAACCAGAGTACTCGTTTCAACAGCTGTTCAGTATAAC
gi|15 : tctA-------------------TCTGATGAAGACCAATTCAAATTTTTCTT-----------------TCCAACA-CACTAT-T----TTT-AG------C------TT-TAATTATTTTAA-CTAATGGGAATACTCGTTTCAACAGCTGCTCCCCATAACCTT
gi|16 : tctgactgaaatcagtgatcaCTAAAGTACACG----ATCTTC-GTAAATATAAGA-------------------CCTGATGACGACATATTCAAATTCTTTATGTAGAAAAAAAAAGATTTCCAATATCGCTATAT----TTT-AG-----------TATT-T--TTATTTCAA-CCAATCAAAGTAC
gi|17 : cGATTAAAGTACACG----ATCTTCTA-AAATGTAAGA-------------------TCTGATAATGACCTGTTCAAAGTCTTCTTTTAA-AATAACTGGATTTCCAAT------------------------------------------TTTCAA--CA---AGAGTACTCATTACAACAGTCGTT-GGCACA
gi|18 : ctGACTAAAGTACACG----ATCTCCC-TAAATGTAAGA-------------------TCTGATGACGACCTATTTAAATTCTCCTTTTAG-TAAAACTGGATTTCCAATATTGCTAT-T----TTA-AG------CAA-C---T-T--TCATTTCAA-CCAATCA
gi|19 : tctTATT-T--TTAT--CAAACCAATCAGAGTACACGTTTCATCAGCTGTTCGGCATAACCTT
gi|5 : GACTAAAGTACACG----ATCTTCCATAAATGTAAGATCTGATGGCGATCCATAGATCTGATGGCGATCCATACAAATTCATCTTCTTG-TTTTATCGGATTTCCAATATCGCTAT-T----TTT-AGATCCACCAAGCTATT-T--TTAGATCCA-CTAATCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTTC
gi|6 : ctGACTAAAGTACACGCACGATCTTCCATAAATGTAAGA-------------------TCTGATGGCGATCCATTCGAATTCATCTTCTTG-TTTTATCGGATTTCCAATATAGCTAT-T----TTT-AGATCCACCAAGCTATT-T--TTAGATCCG-CCAATCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTT
gi|7 : ctGACTAAAGTACACG----ATCTTCCATAAATGTAAGA-------------------TCTGATGGCGATCCATTCGAATTCATCTTCTTG-TTTTATCGGATTTCTTATATCGCTATATAAGATCC-AC------CAAGCTATT-T--TTAGATCCA-CCAGTCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTTC
gi|8 : tctGACTAAAGTACACG----ATCTTTCATAAATGTAAGA-------------------TCTGATGGCGATCCATTCGAATTCATCTTCTTG-TTTTATCGGATTTCCAATATCGCTAT-T----TTT-AGATCCACCAATCTATT-T--TTAGATCAA-CCAATCAGAGGACTCGTTTCAACAGCCGTTTGGCTTAACCTTC
gi|9 : GAGTAAAGTACACG----ATCTTCT-TCAATGTAAGA-------------------TCTGATGATGACCTATTCAAATTCTTCTTCTGG-AATAACTGGATTTCCATTATCGCTAT-T----TTA-AG----------CTATT-C--TTATTTCCA-CCATTCAGAGAACTCGTTTCAACAGCCATTTGGCATAACCTTC
blockSeqs : CACG A TCTGATGGCGATCCATAGA A AAAAA T A AAGA T ATCCACCAAGC A AA T A T
blockSeqs : GT G . A AATA T A . . ATCCACCAAGC . . T . C
blockSeqs : . A . C AATG T . . . ATCCACCAATC . . T . C
blockSeqs : . A . A AACA T . . . CAAGC . . T . C
blockSeqs : . A . A AATA A . . . CAAC . . T . C
blockSeqs : . A . A TAAA T . . . CAA . . T . C
blockSeqs : . A . T TTTT T . . . C . . T . T
blockSeqs : . . . T TTTT C . . . T . . T . T
blockSeqs : . . . T TTTT C . . . C . . A . T
blockSeqs : . . . T TTTT C . . . C . . A . T
blockSeqs : . . . G AATA C . . . C . . A . T
blockSeqs : . . . . A T . . . . . . A . .
blockSeqs : . . . . . . . . . . T .
blockSeqs : . . . .
blockSeqCons :
originalCons : GACTAAAGTACACG----ATCTTCCATAAATGTAAGA-------------------TCTGATGACGACCTATTCAAATTCTTCTTCTNG-AATAACCGGATTTCCAATATCGCTAT-T----TTT-AG------CAA-CTATT-T--TTATTTCAA-CCAATCAGAGTACTCGTTTCAACAGCCGTTCGGCATAACCTTC
finalCons : GACTAAAGTACACG----ATCTTCCATAAATGTAAGA-------------------TCTGATGACGACCTATTCAAATTCTTCTTCTNG-AATAACCGGATTTCCAATATCGCTAT-T----TTT-AG------CAA-CTATT-T--TTATTTCAA-CCAATCAGAGTACTCGTTTCAACAGCCGTTCGGCATAACCTTC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAAATGGTGTCAATTGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACAAGAGCAAAGAACAGTTTTCGATGCTGTATGGTCAGGGAAAGACTGTATCGGTGTTTTGCCGACAGGTTTTGGAAAATTGCTTCCGTATCAAGTGCTGTCTTTGGTAAACCGCATGTGGAATAAGTGGAATAGAACTAGAACACGCGTGTAAATCACTATGCGAAAAT
Unaligned ( gi|2 ): AAATGGCGTCAATTGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAATCAGAGCAAAGACCACTTCGTCAGCTGCTCTAAAACCAGATATTTTTCAATTTACGGAACGTAATTTTATTTCCGCGTAGCCATGATGCGGTCGTCATAAGAACTAGAACACGCGTGTAAATCACTATGCGAAAAT
Unaligned ( gi|3 ): ATGGCGTCAATAGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACCAAAGCAAAGACCACTTCGTCCGCTGCTCTAAAACCAGATCTTTTACAATTTATGGAACGTAATTTTATTTCCGCGTAGCCATGATGCTGTCGTTATAAGAACTAGAACACGCGTGTAAATCACTATGCAAAAAT
Unaligned ( gi|4 ): ATGGCGTCAATTGACGGAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACCAGAGCAAAGACCACTTCGTCCGCTGCTCTAAAACCAGATCTTTTACAATTTACGGAACGTAATTTTATTTCTGCCTAGCCATGATGCGGTCGTCATAAGAACTAGAACACGCGTGTAAATCACTATACGAAAA
Alignments
lowQualScore : 1111 1 2222222222222222222 66666666666
lowQualScore : 0000 4 2222222222222222222 0 3 88888 2 5 6666 2 00000000000 2 33 1 2 3
lowQualScore : .... . ................... . . ..... . . .... . ........... . .. . . .
lowQualScore : 8888 8 1111111111111111111 1 0 99999 7 7 1111 9 66666666666 7 77 2 7 2
consensus : GACTAAAGTACACG----ATCTTCCATAAATGTAAGA-------------------TCTGATGACGACCTATTCAAATTCTTCTTCTNG-AATAACCGGATTTCCAATATCGCTAT-T----TTT-AG------CAA-CTATT-T--TTATTTCAA-CCAATCAGAGTACTCGTTTCAACAGCCGTTCGGCATAACCTTC
Reference ( family-9301 ) : GACTAAAGTACACG----ATCTTCCATAAATGTAAGA-------------------TCTGATGACGACCTATTCAAATTCTTCTTCTNG-AATAACCGGATTTCCAATATCGCTAT-T----TTT-AG------CAA-CTATT-T--TTATTTCAA-CCAATCAGAGTACTCGTTTCAACAGCCGTTCGGCATAACCTTC
gi|10 : GACTAAAGTATATG----ATCTTCC-TAAATGTAAGA-------------------TCTGATGACAATCTATTTAAATTCTACTTCTAG-AATAACTGGATTTCTAATATCACTAT-T----TTT-AG----------CTATT-T--TTATTTCAA--CAATCAGAGTACTCATTTCAATAGCTTTTAGTCATAACTT
gi|11 : tCTAAAGTACACG----ACCTTCC-TAAATGTAAGA-------------------TCTGATGACGACCTATTCAAATTCTTCTTCTAG-AATAACTGTATTTCAAATATCGCTAG-T----TTT-AG----------CTATTAT--TTATTTCAA-CCAATCAGAGTACTCATTTTAACAGCCGTTTGGCATAACTTTc
gi|12 : CTAAA-TACACG----ATCTTCT-TAAATGTAAGA-------------------TCCGGTGACGACATATTCAAATTCTTCTTCTAG-AATGACTGGAATTCCACTATC-CTAC-T----TTT-AG----------TTATT-T--GTGTTACAA-CTAATCAGAGTATTTATTTCAACAGCCGTTCGGCATAACCTTC
gi|13 : tCTTAAGTACACG----ATCTTCC-TAAATGTAAGA-------------------TCTAATGACAACCTACCCAAATTCTTATTCTCG-AACAATTGGATTTCCGATATCGCTAT-T----TTT-AG----------CTATT-T--TCATTTCAA-TCAATCAGAGTA-TCATTTCAACAG-CGTTCGGCATAACC
gi|14 : GACCAAAGTACACGGT--ATCTTTCATAA-TGTAAGA-------------------TATGATGACGTCCTATTCAAA----------------AACTGATTTTCCAATATCGCTTT-T----TTTTAG------CAA-----T-T--TTATTTTAA-ACAACCAGAGTACTCGTTTCAACAGCTGTTCAGTATAAC
gi|15 : tctA-------------------TCTGATGAAGACCAATTCAAATTTTTCTT-----------------TCCAACA-CACTAT-T----TTT-AG------C------TT-TAATTATTTTAA-CTAATGGGAATACTCGTTTCAACAGCTGCTCCCCATAACCTT
gi|16 : tctgactgaaatcagtgatcaCTAAAGTACACG----ATCTTC-GTAAATATAAGA-------------------CCTGATGACGACATATTCAAATTCTTTATGTAGAAAAAAAAAGATTTCCAATATCGCTATAT----TTT-AG-----------TATT-T--TTATTTCAA-CCAATCAAAGTAC
gi|17 : cGATTAAAGTACACG----ATCTTCTA-AAATGTAAGA-------------------TCTGATAATGACCTGTTCAAAGTCTTCTTTTAA-AATAACTGGATTTCCAAT------------------------------------------TTTCAA--CA---AGAGTACTCATTACAACAGTCGTT-GGCACA
gi|18 : ctGACTAAAGTACACG----ATCTCCC-TAAATGTAAGA-------------------TCTGATGACGACCTATTTAAATTCTCCTTTTAG-TAAAACTGGATTTCCAATATTGCTAT-T----TTA-AG------CAA-C---T-T--TCATTTCAA-CCAATCA
gi|19 : tctTATT-T--TTAT--CAAACCAATCAGAGTACACGTTTCATCAGCTGTTCGGCATAACCTT
gi|5 : GACTAAAGTACACG----ATCTTCCATAAATGTAAGATCTGATGGCGATCCATAGATCTGATGGCGATCCATACAAATTCATCTTCTTG-TTTTATCGGATTTCCAATATCGCTAT-T----TTT-AGATCCACCAAGCTATT-T--TTAGATCCA-CTAATCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTTC
gi|6 : ctGACTAAAGTACACGCACGATCTTCCATAAATGTAAGA-------------------TCTGATGGCGATCCATTCGAATTCATCTTCTTG-TTTTATCGGATTTCCAATATAGCTAT-T----TTT-AGATCCACCAAGCTATT-T--TTAGATCCG-CCAATCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTT
gi|7 : ctGACTAAAGTACACG----ATCTTCCATAAATGTAAGA-------------------TCTGATGGCGATCCATTCGAATTCATCTTCTTG-TTTTATCGGATTTCTTATATCGCTATATAAGATCC-AC------CAAGCTATT-T--TTAGATCCA-CCAGTCAGAGGACTCGTTTCAACAACCGTTTGGCTTAACCTTC
gi|8 : tctGACTAAAGTACACG----ATCTTTCATAAATGTAAGA-------------------TCTGATGGCGATCCATTCGAATTCATCTTCTTG-TTTTATCGGATTTCCAATATCGCTAT-T----TTT-AGATCCACCAATCTATT-T--TTAGATCAA-CCAATCAGAGGACTCGTTTCAACAGCCGTTTGGCTTAACCTTC
gi|9 : GAGTAAAGTACACG----ATCTTCT-TCAATGTAAGA-------------------TCTGATGATGACCTATTCAAATTCTTCTTCTGG-AATAACTGGATTTCCATTATCGCTAT-T----TTA-AG----------CTATT-C--TTATTTCCA-CCATTCAGAGAACTCGTTTCAACAGCCATTTGGCATAACCTTC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAAATGGTGTCAATTGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACAAGAGCAAAGAACAGTTTTCGATGCTGTATGGTCAGGGAAAGACTGTATCGGTGTTTTGCCGACAGGTTTTGGAAAATTGCTTCCGTATCAAGTGCTGTCTTTGGTAAACCGCATGTGGAATAAGTGGAATAGAACTAGAACACGCGTGTAAATCACTATGCGAAAAT
Unaligned ( gi|2 ): AAATGGCGTCAATTGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAATCAGAGCAAAGACCACTTCGTCAGCTGCTCTAAAACCAGATATTTTTCAATTTACGGAACGTAATTTTATTTCCGCGTAGCCATGATGCGGTCGTCATAAGAACTAGAACACGCGTGTAAATCACTATGCGAAAAT
Unaligned ( gi|3 ): ATGGCGTCAATAGACGAAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACCAAAGCAAAGACCACTTCGTCCGCTGCTCTAAAACCAGATCTTTTACAATTTATGGAACGTAATTTTATTTCCGCGTAGCCATGATGCTGTCGTTATAAGAACTAGAACACGCGTGTAAATCACTATGCAAAAAT
Unaligned ( gi|4 ): ATGGCGTCAATTGACGGAGTTTTAAATGATGCTTTGAGCAAATTTAAAATAAAACATTTAAAACCAGAGCAAAGACCACTTCGTCCGCTGCTCTAAAACCAGATCTTTTACAATTTACGGAACGTAATTTTATTTCTGCCTAGCCATGATGCGGTCGTCATAAGAACTAGAACACGCGTGTAAATCACTATACGAAAA