lowQualScore : 2222222 3333333 1 11111 1 333333333333 11111111111111111111 1111 22222222 11111 222222222 1111 222 222222222 111 3333333333 1 3333333 2222 33333 1 33333333333 2222 1 1 55555555555555555555555 11 111 1 11 333 1 1111 1 11 1111 1111111 11 4444444444444444444 111 111111111 2222222 2222222222 111111111 111 3333333 11 11111111 111 111 2222222 11111 11 111111
lowQualScore : 4444444 6666 555 33 8888888 2 4 00000 3 3 44 555 3 1 3 44 3 000000000000 0 66 2 88888888888888888888 7 55 2 1 7 3333 77 66666666 44444 1 5 444444444 1 44 2222 5 6 666 8 444444444 444 8888888888 8 6 3 0 3 22 0 2222222 8 4 2222 7 55555 5 66666666666 3 9999 1 7 2 44444444444444444444444 2 4 99 222 5 88 333 2 4 6 7 88 4 8888 7 3 0 33 0 7777 5 1111111 55 8888888888888888888 000 5 77 555555555 6666666 9999999999 4 666666666 5 888 000 0 2222222 1 0 5 22 1 22222222 6 2 1 2 88 3 555 99 1 555 3 6 5 3 2222222 1 5 2 6 5 66666 0 99 66 1 44 77 999999
lowQualScore : ....... .... ... .. ....... . . ..... . . .. ... . . . .. . ............ . .. . .................... . .. . . . .... .. ........ ..... . . ......... . .. .... . . ... . ......... ... .......... . . . . . .. . ....... . . .... . ..... . ........... . .... . . . ....................... . . .. ... . .. ... . . . . .. . .... . . . .. . .... . ....... .. ................... ... . .. ......... ....... .......... . ......... . ... ... . ....... . . . .. . ........ . . . . .. . ... .. . ... . . . . ....... . . . . . ..... . .. .. . .. .. ......
lowQualScore : 0000000 1111 000 99 5555555 9 3 88888 1 1 22 444 3 0 8 22 0 999999999999 1 11 6 44444444444444444444 9 22 2 6 6 4444 77 44444444 33333 1 7 999999999 4 33 1111 7 6 777 2 666666666 000 6666666666 0 5 2 0 5 22 2 5555555 3 7 3333 3 33333 0 00000000000 0 0000 5 0 5 55555555555555555555555 5 0 00 000 0 00 555 5 0 0 0 55 0 3333 8 2 5 88 2 2222 2 3333333 00 0000000000000000000 999 7 33 111111111 4444444 0000000000 3 333333333 1 333 000 6 7777777 9 7 7 99 5 55555555 7 5 8 2 55 7 222 22 0 777 5 6 7 5 7777777 0 7 5 2 0 22222 3 66 99 4 00 99 222222
consensus : TAGTTTCAATACAGAAA---CGC-AC----AT---TCCCA--TTTCATTCCCAT--ATTTAA-CGTTTCAATTCG-----A-TG-TTCAT--ATTA---AG-TAGGAGCAGGA-CTAAAATTT---AA--AGT--CACGCTA--TTTTAA------GA---ATTCAT---ACCTATATAA-ATATATATATTTNGTGC--AGCTACGC---TN--NAAA-----AAGCA-AT-GATAT--NTCGTTNAGTA----AGTC-AAACTTTA-AAAAAAACAACCAAGTTACTTTT---CTACCT---------TGTCA-AAACATT-CTGNTGACGGCCATTT-------TGAAATATAACGGGATCTCGCGAGAATGGAACG--AGACTTCCGATTTCCATA-TTT---G--TTTGTTTACTGNGATTGTTGTTTACGAATGAAAATCTGACGTATGGCGGGAAACACANACGGAACGNGACATNNCATTTATTAAANCAGTNGGTAGGACGCCCAAAGCATCCGTTCCGTCACATATGAGGCTNNNAATGTTCTTCTGTTCTTTTTAAGCTGGATTCNGAAGCANTGTTTCTCTAAAACTCTTTGCAAACANTGGTTGAAATTNAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTNCCTTATATGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGNCGAAAGTATNCGAAT--GTTAACGG-AG-----GTA--NA-TTTT-A---TTTNG-AT-------TTACC--G------CAACACAA--TA-AGNAGGTTTTTG--A---ATAA-CGGTTAATTAAACC-CTCAAAAACGT--TTTACCGATTA-TNTNAACGACTANAGGTTAGAGANAAA-CGATA--TATTGTN--GCAACCATNACGTTTTATAGCCGCTAAA-AATGT-CG---AAGTACCTG-AAAACCTTGCAGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCGTGACG-AGA--GGGTATCGA--GTCAAAGGT------AGTAATATTATTT
Reference ( gi|1 ) : TAGTTTCAATACAGAAA---CAG-AC----AT---TCCCA--TTTCATTCCCAT-AATTTAA-CGTTTGAATTCG-----A-TG-TTCAT--ATTA---AG-TAGAAGCAGGA-TTAAACTTT---AA--AGT--CACGCTA--TTTTAA------GA---ATTCAT---ACCTATATAA-ATATATATATTTAGTAT--AAATACAC---TT--CAAA-----AAGTA-AT-GATGT--TTTGTTTAGTA----AGTC-AAACTTTATAAAAAAACAACCAAATTATTTTT---CTACCA---------TGTCA-AAACATT-CTGATGACGGCCATTT-------TAAAAAATAACAGGAACCTGCGAGAATGGAATA--ACACTTCCGATTTCAATAATTT---G--TTTGTTTACTATGATTGTTGTT-ACGAATGAAAATCTGACGTATGGCAGGATACACACAC--AATTCG-CATTTTATTTATTCAACCAGTTGGTAGGACGCCCAAAGCATCATTTCCGTCACATATGAGGCTTATAATCTTCTTCTGTTCTTC--AAGCTGGATTCCGAAGCATTGTTTCTCTGAAACTCTTTGTATACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTATTGCTTTACTACGATTACCTTATTTGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAAT--GCTAGCGA-AG-----GTA--CA-TTTT-A---TTTCG-AT-------TTACC--G------CAACACAA--TA-AGAAGGTTTTTG--A---ATAA-CTGTTAATTAAACC-CTCAAAAACAT--TTTACAGATTA-TGTAAACAGCTACGGGTTAGAGATAAA-CAATA--TATTGTA--GCAACCATAATGTTTTATAGCCGCTAAA-AATGT-CA---AAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCACACTGCTCCATTACAA-CCGTATGCATCGATTTACTACCGTGACA-AGA--GGGTATGAA--GTCAAAGGT------AGTAATATTATTT
gi|3 : TAGTTTCAATACAGAAA---CGC-AC----AT---TCCCA--TTT---------------AA-CATTTTAATTCG-----A-TG-TTCAT--ATTT---AA-TAGGAGCAGGA-CTAAAATTT---AG--TGT--CGCGCTA--TTTTAA------GA---ATTCAT---ACCTATATAA-ATATATATATTTAGTGT--AAATACGC---TT--CAAA-----AAGTA-AT-GTTAT--ATTGTTTAGTA----AGTC-AAA-TTTA-AAAAAAAAAAACAAGTTTCTTTT---CTACCT---------TGTCA-AAACATT-CTGATGATGGCCATTT-------TAAAAAATACTGGGGTCTCGCGAGAATGGAATG--AGACATCCGATTTCCATATTTG---G--TTTGTTTACTAGGATTGTT--T-ACGAATGAAAATCTGACATATGGCTGGAAACACACAC--AACTTG-CATAATATTTATTAAACCAGTAGGTAGGACGCCCAAAGCATCTTTTCTGTCACATATGAGGCTAAAAATGTTTTT--GTTCTTT--AAACTGGATTCGGAAGCATTGTTTCTCTAAAACTCTTTGCAAACAGTGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTGCTTTATATGG--TAGACT-C--TGTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATACAAAT--TTTTATGA-AACT---ATA--CA-TTTT-A---TTTTG-AT-------TTACC--G------CAACACAA--TA-AGGAGATTTTTG--A---ATAA-CAGTTAATTAAACC-CTCAAAAATCT--TTTACAGATTA-TGTAAACAGCTCAAGGTTAGAGCTAAA-CGATA--TATTGTA--GCAACAACCATGTTTTATAGCCGCTAAA-AATGT-CA---AAGTACCTG-AAAACCTTGCAGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCATGACG-AGA--GGGTATCGA--GTCAAAGGT------TATAATATTATTT
gi|24 : tTGGTTTCAATACAGAAA---CTC-AC----AT---TCCTA--TTTCATTCC----AATTTAA-C
gi|20 : TAGTTTCAGTACAGAAATGCCAG-ATTCAAATAAATCCCA--TTTCATTCCC----ATTAAA-CGTTTCAAT--G-----G-TA-TTTGT--AATA---agatggcagtaa
gi|10 : AGTTTCAATACCGAAA---TTC-AA----AT---TCCCA--TTTCATTCCCAC----TTAA-CTTTTCAATTCG-----A-TG-TTCAT--ATTA---AG-TAGAAGCA--A-TCAAAGGT--------AGT--TATATTA--TTTTTA------GA---TTTGAG---G---GTGTAC-ATATTTGTACATGGT-T--ACATACATGTGTG--TAAA-----AATTACAT--ATTTGATTTATCTAATATTTCAGT--AAACTTcaaaat
gi|19 : AGTTTCAATACAGAAA---CAC-AC----AT---TTCCA--TTTCATTCCCATGGATGTAG-C-----AAGTCGT----ATTG-TTTAT--ACTA---AACTAAAGGTAG
gi|18 : AGTTTCAATACAGACA---CGC-AC----AT---TCCCA--TTTCATTCCCAT-taatat
gi|2 : GTTTCAATACAGAA----TAGCAC----AT---TCCCA--TT------------A---AA-CGTTTCAATTCG-----A-TG-TTCAT--ATTA---AG-TAGAAGCAGAA-CTAAAATTT---AG--AGT--CACACTA--TTTCAA------GA---ATTCAT---ACCTATATAA-ATAAATATCCTTAGTAT--AAATATAC---TTTACAAATTTTAAAGTA-AT-ATTAT--ATTGTTTAGTA----AGTC-AAACTTTA-AAAAAAACTACCAAGTTACTTTT---CTACCT---------TGTCA-AAACATT-CTGATGACAGTCATTT-------TGAAATATAACAGGATCTCGTGAGAATGGAACG--AGATTTCCGGTTTTCATA-TTTCCGG--TTTGTTTACTGTGATTGTTGTTTACGAATGAAAATTTGACGTATGGTGAGAAACACAAACGGAATGAGACATTCCA---A---AAACAGTTGGTAAGACGCCCAAAGCATCCGTTCCGTCACATATGAGGCTTTTAATGTTCTTCTGTTCTTTTTAAGCTGGATTCCGAAGCAATATTTCTCTAAAACTCTTTGTAAACACTGGTTGAAATTAAGGTCCGCCATTGTGTTTTTATTTTACTACGATTTCCTTATTTGG--TAAACT-C--TTAAGCGCCGCCCAAAAATTT--TAGCCGAAAGTATCCGAAT--GTTAACGGTAGT----ATA--CA-TTTT-A---TTTGG-AT-------TTACC--G------CAACACAA--TA-TG-TGTTTTTTT--A---ATAA-CGGTTAATTAAACC-CTCAAAAACGT--TTGACAGATTA-TGTAAACAGCTACAGGTTAGAGAAAAA-CGATA--TACTGTA--GCAAACATAATGTTTTATAGCCGTTTAA-AATGT-CA---AAGTACCTGAAAAATCTTGCAGA-AGTGAATAGCTGCCACACTGCTCCATTACAA-CCATGTGCATCGATTTACTACCGTGACG-AGA--GGCTATCGA--GTCAAAAGT------AGTTATATCATTTttactgactagagggtatcgagtcaaaggtacctgaagtaatattattt
gi|15 : GTTTCAATGCAGAAG---CGC-AC----AT---TCCCA--TTTCATTCCCAT----TTAA-CGTTTCAATTCG-----A-TG-TTCAT--ATTA---AG-TAGGAGCAGGA-CTAAAATTT---AA--AGT--CACGCTA--TTTTAA------GA---ATTCAT---ACCCATATAT-ATATAT
gi|22 : GTTTCGATACAGAAA---CGC-AC----AT---AACTA--TTAAATTCCCAT---TTAAA-CATTTTAATTCA-----A-TG-TTCCT--GTT-------TAGGAGCAAGA-CT
gi|25 : GTTTCTA-ACAGAAA---CGC-AC----AT---TCCCA--TTTCATTCCC----ATTTAA-CAT
gi|23 : TTCAATACAGAAA---TGC-AC----AT---TCCC-----------------ATTTAA-CAATTCAATTTG-----A-TG-TTCAT--ATTA---AG-TAGGAGCAGGA-CTgaccaga
gi|13 : TCAATACAGAAA--------------T---TTCTA--TTTCATTCTC----ATTTAA-TGTTCTAATTTA-----A-TGTTTCATGAATTATAGAG-TATGAGTAGGA-CTAAAATTT---CA--TGA--CAAGCTG----TGAA------GATTGAGTAAT---ACCT
gi|12 : AATACAGAAA---T-G-CC----AA---TTCTAATTTTCATTTTAAA-AAAACAAACGTTTAAATTTG-----A-TG-TTCAT--TTTA---AA-TAGGAGCATGACTTAAGTTTC--------CT--GACAATAAGTTTTAAT-----G-----TTC-----ACC------A-ACATATGTATTTTATGC--AGCAACGC---TA--GAAA-----TAGAA-AG-GA-AT--CTTA--TGGTT----ATTC-AAAATTTA-AAAAtcaatgggatattgagtttagtgtcctttatgtgcttcattaaagccagtattg
gi|9 : ----AT---TCCCA--TTTTATCTCTAT-A-TATGG-TGTCT--ATCCG-----A-TG-CCCTT--ATTA---AG-CAGGAG----A-TGAA--TTT---AC--A-----ACGC-G--T-----------GA------CA----ACCTATTTAA-ATAT-------T-GTGC--AGCTACGC---T----AAA-----AAGCA-ATTGA-AT--CCCATTAAGTA----AGTC-AAATTTAAAAAAAGAATGACT-TATTAATTTT---TTACCT---------TGTAA-GAA
gi|8 : ttgacgtcacttagtttcaaTCATTGCCAT----TTAG-TGTTTGATTTTG-----A-T---------ATTA---AG-TAGAAGCATGA-TAAAATATT--------GTGACAAGCTA--TTTCAA------AA---GGTTAA---ATGCGTACAA-A---ACACATTTTCTAC--AGCTACGT---TA--AAAA-----AGGCA-AT-GAAAT--TTCATCAAATA----AGTCAAAACTAAATGAAGATA-AACCTATTTACTTTTTACCTATCAGATAGTATCTGTCA-GAA-ATTATTGCTGACAGGCATTT-------TGAGA
gi|6 : GTTTCAACTTGTCGTCA-TG-TTTAT--ATTT---AG-TAAGAGCATGG-CTAAAATTTCGTGACTAGT--C---TTA--TTAAAAAAGCTTGA---ATGCATCTAACC-ATATGCCATCTGTATTTTTACTTTTTAGCTGCAC---TC--AAGA-----AAACA-AT-GAAAT--TTCATGAAGTA----AGTC-AAAGTT---AAAAAATCAA---------TTTC---CTACCA---------TGTTAGAAATA-T-CTTTTGAGAGCCATTTTGAAATATAAAATATAACTGGATATTCCAAGAA--AAATGTTGAACTTCAAATTTCCAT-ATTT---GGCTTTATTt
gi|5 : taagtgtgagtCCATTTTTTCA---CCTTACTGCGATTTCCT-ATATAGACTAGAATACGATTTAGCTCTGCTCACAAATTC--TGAGGGAATGTA----AAT--G-----GA-AG------TG--AA-TTTG-AAAATGGAA-AT-------TTAC---A------CAA-ACAAATTA-ACA-TGTATTTA--A---AAAA-CAATGAATAAAAACACTCAGAAACAT--TTTATCAATTA-TTTTAAAGACTACAGGGTGGACAAAAA-TCATA--TTTTCTT--GCAACCATAACTTCTGATAGCCGATACA-TTTTC-TC---TATTAACTG-AAAACCTTGCAGA-AATAAATAGCTTCCATACTTCTCAACTGAAA-C
gi|4 : aATTACTTTATATAG--AATACA-G--TTTAGCTCCGCCAAT-AATTTGCTAGTCGAAAGTATTTTAAT--G-TA--GA-AGTACTTGTA--AA-TGCTAA---TCTTGAATAGAATAGTTACCAAA------TAACACAG--CATAGTAGGTGTTTG--ATAGAAAA-AGG--AGTTACGCA-CTC--AAACATTGTTTGCCGCTCATTGCATTCATC-AAAGATTAGAAGT-AA-C-ATT--TATTTTT--GCAACCATTACGTTTTATGTCCGGTAAATAACAT---------TGCTCG------CTC--------TGGATAACGTCCACGCTG--CAACTACAAGGCA-ATACATCGGCTAACAACCGCCACATAGATGGGGTAT
gi|11 : --TTTAGGTCCATTTTCAAATTT--CA------AGT---CGAAT--GAAAACGG-AG-----GTA--AA-TTGA-A---T-----AT-------TTACA--AAAAAAACAAAACAA--AA-AAAAAAC----A--A---ATAA------AA--AAAGT-TT--AAAACAC--AAAACCAATTA-TTTCAACGACTACATGTTCGAGATAAATCGA-----GTTGTGCTGCAACCATCATGTTTGATc
gi|7 : atacaaCCA-AAATTT--GCGATGAGTGTATGTGAATATGAAAG-GA-AG-----TTA--TAATTTG-A---TTTGA-ATAG-----TTACC---------CAAAACAAA-TT-AGCAGGTTTTTGCAA---ACAAACTG---ATTATACT-CT-----------------GATTA-TTTGGATGACTAAATGTTGGAGAGAAA-TGATAAATATCATT--GCAACCATTACATTTGATAGACG--ACA-AATGTTCATCTAAATGTTGG-AATACTTTGCTGT-AGTGACTAGTTTCCACACTGTTGTATTATAA-caccaa
gi|17 : tAGTA-CCGAAT--GTTAACGG-AA-----GTATACA-TTTT-A---TTTCG-AT-------TTACC--G------CAACACAA--TT-AGGAGGTTTTTA--A---ATAA--TGTT--TTATAGC-CGCTAAAAa
gi|17 : ATAATGTTTTATAGCCGCTAAA-At
gi|14 : agtaccgaatgttaacggaagtatacattttatttcgatttaccgcaacacaattaggaggtttttaaAATGTTTTATAGCCGCTAAA-A-TGT-CG---GAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCAGCACTGCTTCATTACAA-CCATATGCATCGATTAACTACCGTAACG-AGA--GGGTATCAA--GTCATAGGT------AGTAATATTATTTt
gi|16 : -AAAACTTT-CAAAGAGTGAATAGCATCGGCAATGCTCCATTACAA-GGTTATGTATTGATTTAGAACCATGA-----A--GGATGCAGAGGGTCAAAc
gi|21 : CCTTGCAGA-TGAGAATAGCCTCCGAGCTGCTCCATT--------------------TACTATGGAGACA-GAA--GA--ACGGA--GGCAATGGT------AATAATATTATTTctaagatggatttactatttc
gi|18 : ATTTACT-----GACT-AGA--GGGTATCGA--GTCAAAGGTACCTGAAGTAATATTATTTc
gi|26 : agtttcaatacagacacgcacattcccatttcattccc-AGA--GGGTATCGA--GTTAAAGGT------AGTAATATTATTT
Alignments
lowQualScore : 333333333333333 11111 22222222 111111 11111 11111111111 1 1 111111 3333333333333 1 2222222 11 1 333333 1111 333333333 11 33 11 1111 1111 22222 11 2222222 11 1111 111111 111111
lowQualScore : 8888888 444 22 1 888888888888888 4 00000 2 2 33 555 3 1 4 44444444 55 55 1 555555 9999 9999 5 0 0 44 44444 0 55555555555 0 5 2 1 66 5 1 5 99 444444 1 1 6666666666666 0 8 8 1 6666666 1 4 3 2 33 0 0 111111 11 2222 3 1 444444444 222 7 1 1 00 333 6 00 1 1 0 1 1 2 1 0 1 11 2222 3 0000 66 777 6 3 5 44444 5 1 11 9999 66 0 2 3333333 999 888 11 5 1 0 777 888 2 5555 88 0 4 7 1 4 1 1 0 1 0 1 5 3 77 888 1 6 5 1 2222 77 5 2 4 4 11 888888 66 666666
lowQualScore : ....... ... .. . ............... . ..... . . .. ... . . . ........ .. .. . ...... .... .... . . . .. ..... . ........... . . . . .. . . . .. ...... . . ............. . . . . ....... . . . . .. . . ...... .. .... . . ......... ... . . . .. ... . .. . . . . . . . . . .. .... . .... .. ... . . . ..... . . .. .... .. . . ....... ... ... .. . . . ... ... . .... .. . . . . . . . . . . . . . .. ... . . . . .... .. . . . . .. ...... .. ......
lowQualScore : 7777777 777 99 4 777777777777777 1 00000 9 9 99 000 8 0 0 22222222 55 55 4 555555 4444 8888 2 9 1 00 33333 7 99999999999 4 7 4 0 66 0 7 7 22 000000 0 0 7777777777777 0 0 0 0 0000000 4 2 2 0 88 2 0 222222 77 0000 7 0 000000000 777 3 0 0 33 000 7 77 0 0 7 0 0 5 0 8 4 00 2222 0 1111 00 888 6 4 0 44444 0 0 99 0000 99 1 8 1111111 111 888 99 0 0 2 111 888 6 0000 66 2 5 6 6 3 0 0 4 0 7 0 7 0 99 999 0 6 7 7 1111 99 0 7 4 4 77 999999 11 444444
consensus : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------CATA-TTTAACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTNGTGC-----AGCTACGCTNNA---A----AAAGCAAT-GATATNTCGTTNAGTAAGTCAAANTTTA-AAAAA--AACAA-CCAAGTTACTTTTCTACCT-------------TGTCAGAACAT-T-CTGATGACGGCCATTTTG-------AAATATAACGGGATCTCGCGAGAATGGAATG--AGACTTCCGATTTCCATA-TTT---GG-TTTGTTTACTATGATTGTTGTTTACGAATGAAAATCTGACGTATGGCGGGAAACACACAC--AATTCG-CATTNTATTTATTAAACCAGTTGGTAGGACGCCCAAAGCATCNTTTCCGTCACATATGAGGCTTATAATGTTCTTCTGTTCTTT--AAGCTGGATTCCGAAGCATTGTTTCTCTAAAACTCTTTGTAAACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTNCCTTATATGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--T-AGCCGAAAGTATCCGAATGTTAACGG-AG-----GT-ANA--TTTT---A--TTTNGAT-------TTACCG--CAA---CACAA--TA-AGNAGGTTTTTG--A---ANAACGGTTAAT-TAAACCCTCAAAAACGTTTTACCGATTATTTNAACGGCTACAGGTTAGAGANAAA-CGAT--ATATTGT--NGCAACCATNACGTTTTATAGCCGCTAAA-AATG----TCGAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCGTGACG-----AGA--GGGTATCGAGTCAAAGGT------AGTAATATTATTT
Reference ( family-930 ) : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------CATA-TTTAACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTNGTGC-----AGCTACGCTNNA---A----AAAGCAAT-GATATNTCGTTNAGTAAGTCAAACTTTA-AAAAA--AACAA-CCAAGTTACTTTTCTACCT-------------TGTCAAAACAT-T-CTGNTGACGGCCATTTTG-------AAATATAACGGGATCTCGCGAGAATGGAACG--AGACTTCCGATTTCCATA-TTT---G--TTTGTTTACTGNGATTGTTGTTTACGAATGAAAATCTGACGTATGGCGGGAAACACANACGGAACGNGACATNNCATTTATTAAANCAGTNGGTAGGACGCCCAAAGCATCCGTTCCGTCACATATGAGGCTNNNAATGTTCTTCTGTTCTTTTTAAGCTGGATTCNGAAGCANTGTTTCTCTAAAACTCTTTGCAAACANTGGTTGAAATTNAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTNCCTTATATGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--T-AGNCGAAAGTATNCGAATGTTAACGG-AG-----GT-ANA--TTTT---A--TTTNGAT-------TTACCG--CAA---CACAA--TA-AGNAGGTTTTTG--A---ATAACGGTTAAT-TAAACCCTCAAAAACGTTTTACCGATTATNTNAACGACTANAGGTTAGAGANAAA-CGAT--ATATTGT--NGCAACCATNACGTTTTATAGCCGCTAAA-AATG----TCGAAGTACCTG-AAAACCTTGCAGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCGTGACG-----AGA--GGGTATCGAGTCAAAGGT------AGTAATATTATTT
gi|1 : TAGTTTCAATACAGAAACAG-------ACAT---TCCCATTT-CATTCC-------CATAATTTAACGTTTGAATTCG-----A-TGTT-CAT--ATTA---AGTAGAAGCAGGATTAAACT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTAGTAT-----AAATACACTTCA---A----AAAGTAAT-GATGTTTTGTTTAGTAAGTCAAACTTTATAAAAA--AACAA-CCAAATTATTTTTCTACCA-------------TGTCAAAACAT-T-CTGATGACGGCCATTTTA-------AAAAATAACAGGAACCTGCGAGAATGGAATA--ACACTTCCGATTTCAATAATTT---G--TTTGTTTACTATGATTGTTGTT-ACGAATGAAAATCTGACGTATGGCAGGATACACACAC--AATTCG-CATTTTATTTATTCAACCAGTTGGTAGGACGCCCAAAGCATCATTTCCGTCACATATGAGGCTTATAATCTTCTTCTGTTCTTC--AAGCTGGATTCCGAAGCATTGTTTCTCTGAAACTCTTTGTATACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTATTGCTTTACTACGATTACCTTATTTGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--T-AGCCGAAAGTATCCGAATGCTAGCGA-AG-----GT-ACA--TTTT---A--TTTCGAT-------TTACCG--CAA---CACAA--TA-AGAAGGTTTTTG--A---ATAACTGTTAAT-TAAACCCTCAAAAACATTTTACAGATTATGTAAACAGCTACGGGTTAGAGATAAA-CAAT--ATATTGT--AGCAACCATAATGTTTTATAGCCGCTAAA-AATG----TCAAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCACACTGCTCCATTACAA-CCGTATGCATCGATTTACTACCGTGACA-----AGA--GGGTATGAAGTCAAAGGT------AGTAATATTATTT
gi|10 : AGTTTCAATACCGAAATTC-------AAAT---TCCCATTT-CATTCC-------CAC---TTAACTTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGAAGCA--ATCAAAGG-T--------AGTTAT--ATTA--TTTTTA------GA---TTT
gi|11 : --TTTAGGTCCATTTTCAAATTT--C-A------AGT---CGAATGAAAACGG-AG-----GT-AAA--TTGA---A--T----AT-------TTACAA--AAAAAACAAAA--CA-AAAA----------A---AAAACAAATAAA-AAAAGTTT--AAAACACAAAACCAATTATTTCAACGACTACATGTTCGAGATAAATCGA-----GTTGTGCTGCAACCATCATGTTTGATgagggtgtacatatttgtacatggttacatacatgtgtgtaaaaattacatatttgatttatctaatatttcagtaaactt
gi|12 : atacaaAATACAGAAATGC-------CAAT---TCTAATTTTCATTTTAAAAAAACA------AACGTTTAAATTTG-----A-TGTT-CAT--TTTA---AATAGGAGCATGACTTAAGT-TT-------CCTGAC--AATAAGTTTTAAT-----G-----TTC-----ACC------AACATATGTATTTTATGC-----AGCAACGCTAGA---A----ATAGAAAG-GA-ATCTTAT--GGTTATTCAAAATTTA-AAAAcaccaa
gi|13 : TCAATACAGAAA-------------T---TTCTATTT-CATTCT-------CAT---TTAATGTTCTAATTTA-----A-TGTTTCATGAATTATAGAGTATGAGTAGGACTAAAAT-TT---CA--TGACAA--GCTG----TGAA------GATTGAGTAAT---ACCT
gi|14 : ATGTTTTATAGCCGCTAAA-A-TG----TCGGAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCAGCACTGCTTCATTACAA-CCATATGCATCGATTAACTACCGTAACG-----AGA--GGGTATCAAGTCATAGGT------AGTAATATTATTTtcaatgggatattgagtttagtgtcctttatgtgcttcattaaagccagtattg
gi|15 : aGTTTCAATGCAGAAGCGC-------ACAT---TCCCATTT-CATTCC-------CAT---TTAACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCCATATATATATATc
gi|16 : -AAAACTTT-CAAAGAGTGAATAGCATCGGCAATGCTCCATTACAA-GGTTATGTATTGATTTAGAACCATGAAGGATGCAGA--GGGT
gi|17 : AGTA-CCGAATGTTAACGG-AA-----GT-ATACATTTT---A--TTTCGAT-------TTACCG--CAA---CACAA--TT-AGGAGGTTTTTA--A---ATAATGTTTTAT---AGCCGCTAAAAcaaactaagatggatttactatttc
gi|18 : AGTTTCAATACAGACACGC-------ACAT---TCCCATTT-CATTCC-------CATt
gi|18 : ATTTACT-----GACT-----AGA--GGGTATCGAGTCAAAGGTACCTGAAGTAATATTATTTttactgactagagggtatcgagtcaaaggtacctgaagtaatattattt
gi|19 : agtttcaatacagacacgcacattcccatttcattcccAGTTTCAATACAGAAACAC-------ACAT---TTCCATTT-CATTCC-------CATG----GATGTAGCAAGTCGT----ATTGTT-TAT--ACTA---A
gi|2 : GTTTCAATACAGAATAGC-------ACAT---TCCCATT------------------A----AACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGAAGCAGAACTAAAAT-TT---AG--AGTCAC--ACTA--TTTCAA------GA---ATTCAT---ACCTATATAAATAAATATCCTTAGTAT-----AAATATACTTTACAAATTTTAAAGTAAT-ATTATATTGTTTAGTAAGTCAAACTTTA-AAAAA--AACTA-CCAAGTTACTTTTCTACCT-------------TGTCAAAACAT-T-CTGATGACAGTCATTTTG-------AAATATAACAGGATCTCGTGAGAATGGAACG--AGATTTCCGGTTTTCATA-TTTCCGG--TTTGTTTACTGTGATTGTTGTTTACGAATGAAAATTTGACGTATGGTGAGAAACACAAACGGAATGAGACATTCCA------AAAACAGTTGGTAAGACGCCCAAAGCATCCGTTCCGTCACATATGAGGCTTTTAATGTTCTTCTGTTCTTTTTAAGCTGGATTCCGAAGCAATATTTCTCTAAAACTCTTTGTAAACACTGGTTGAAATTAAGGTCCGCCATTGTGTTTTTATTTTACTACGATTTCCTTATTTGG--TAAACT-C--TTAAGCGCCGCCCAAAAATTT--T-AGCCGAAAGTATCCGAATGTTAACGGTAGT----AT-ACA--TTTT---A--TTTGGAT-------TTACCG--CAA---CACAA--TA-TGT-GTTTTTTT--A---ATAACGGTTAAT-TAAACCCTCAAAAACGTTTGACAGATTATGTAAACAGCTACAGGTTAGAGAAAAA-CGAT--ATACTGT--AGCAAACATAATGTTTTATAGCCGTTTAA-AATG----TCAAAGTACCTGAAAAATCTTGCAGA-AGTGAATAGCTGCCACACTGCTCCATTACAA-CCATGTGCATCGATTTACTACCGTGACG-----AGA--GGCTATCGAGTCAAAAGT------AGTTATATCATTTactaaaggtagtaatat
gi|20 : TAGTTTCAGTACAGAAATGCCAGATTCAAATAAATCCCATTT-CATTCC-------C--A-TTAAACGTTTCAAT--G-----G-TATT-TGT--AATA---
gi|21 : CCTTGCAGA-TGAGAATAGCCTCCGAGCTGCTCC--------------------ATTTACTATGGAGAC------AGA--AGA-ACGGAGGCAATGGT------AATAATATTATTTcaaaat
gi|22 : GTTTCGATACAGAAACGC-------ACAT---AACTATTA-AATTCC-------CAT--TTAAACATTTTAATTCA-----A-TGTT-CCT--GTT------TAGGAGCAAGACTc
gi|23 : TTCAATACAGAAATGC-------ACAT---TCCCATTT----------------------AACAATTCAATTTG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACT
gi|24 : TGGTTTCAATACAGAAACTC-------ACAT---TCCTATTT-CATT-C-------CA-A-TTTAAC
gi|25 : GTTTCTA-ACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------C--A-TTTAACATagatggcagtaa
gi|26 : -----AGA--GGGTATCGAGTTAAAGGT------AGTAATATTATTTgaccaga
gi|3 : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT----------------------AACATTTTAATTCG-----A-TGTT-CAT--ATTT---AATAGGAGCAGGACTAAAAT-TT---AG--TGTCGC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTAGTGT-----AAATACGCTTCA---A----AAAGTAAT-GTTATATTGTTTAGTAAGTCAAA-TTTA-AAAAA--AAAAA-ACAAGTTTCTTTTCTACCT-------------TGTCAAAACAT-T-CTGATGATGGCCATTTTA-------AAAAATACTGGGGTCTCGCGAGAATGGAATG--AGACATCCGATTTCCATA-TTT---GG-TTTGTTTACTAGGATTGTT---TACGAATGAAAATCTGACATATGGCTGGAAACACACAC--AACTTG-CATAATATTTATTAAACCAGTAGGTAGGACGCCCAAAGCATCTTTTCTGTCACATATGAGGCTAAAAATGTTTTT--GTTCTTT--AAACTGGATTCGGAAGCATTGTTTCTCTAAAACTCTTTGCAAACAGTGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTGCTTTATATGG--TAGACT-C--TGTAGCTCCGCCCACAAATTT--T-AGCCGAAAGTATACAAATTTTTATGA-AACT---AT-ACA--TTTT---A--TTTTGAT-------TTACCG--CAA---CACAA--TA-AGGAGATTTTTG--A---ATAACAGTTAAT-TAAACCCTCAAAAATCTTTTACAGATTATGTAAACAGCTCAAGGTTAGAGCTAAA-CGAT--ATATTGT--AGCAACAACCATGTTTTATAGCCGCTAAA-AATG----TCAAAGTACCTG-AAAACCTTGCAGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCATGACG-----AGA--GGGTATCGAGTCAAAGGT------TATAATATTATTT
gi|4 : tATTACTTTATATAG--AATACA-G--TTTAGCTCCGCCAATAA-TTTGCT-AGTCGAAAGTATTTTAATGT--A-GA-AGTACTTGT-AAA--TGCT---AATCTTGAATAGAATAGTTACCAAATAA---CACAG--CATAGTAGGTGTTTG--ATAGAAAAAGG--AGT-TACGCACTCAAACATTGTTTGCCGCTCATTGCATTCATCAAAGATTAGA-AGTAA-C-AT--TTATTTT--TGCAACCATTACGTTTTATGTCCGGTAAATAACA----TTG---------------CTCGC----TCTGGATAACGTCCACGCTG--CAACTACAAGGCA-ATACATCGGCTAACAACCGCCACAT----AGATGGGGTATC
gi|5 : CCATTTT---TTCACCTTACTGCGATTTCCT-ATATAGACTAGAATACGATTTAGCTCTGCTCACAAATTC--TGAGG-----------GAATGTAAATGG-AA-----GT-GAA--TTTGAAAA--TGGAAAT-------TTA-CA--CAA----ACAAATTA-A-CATGTATTTA--A---AAAACAATGAATAAAAACACTCAGAAACATTTTATCAATTATTTTAAAGACTACAGGGTGGACAAAAA-TCAT--ATTTTCT--TGCAACCATAACTTCTGATAGCCGATACA-TTTT----CTCTATTAACTG-AAAACCTTGCAGA-AATAAATAGCTTCCATACTTCTCAACTGAAA-C
gi|6 : aGTTTCAACTTGTCGTCA-TGTT-TAT--ATTT---AGTAAGAGCATGGCTAAAAT-TTCGTGACTAGTC-----TTA--TTAAAAAAGCTTGA---ATGCATCTAACC-ATATGC-CATCTGTATTTT-TACTTTTTAGCTGCACTCAA---G----AAAACAAT-GAAATTTCATGAAGTAAGTCAAAGTT---AAAAA--ATCAA----------TTTCCTACCA-------------TGTTAGAA-ATAT-CTTTTGAGAGCCATTTTGAAATATAAAATATAACTGGATATTCCAAGAA--AAATGTTGAACTTCAAATTTCCATA-TTT---GGCTTTATT
gi|7 : taagtgtgagtCCA-AAATTT--G-CGATGAGTGTATGTGAATATGAAAGG-AA-----GTTATAA-TTTG---A--TTTGAATAG-----TTACC---CAA---AACAAA-TT-AGCAGGTTTTTGCAA---ACAA--ACTGAT-TATACTCT---------------GATTATTTGGATGACTAAATGTTGGAGAGAAA-TGATAAATATCAT--TGCAACCATTACATTTGATAGACG--ACA-AATGTTCATCTAAATGTTGG-AATACTTTGCTGT-AGTGACTAGTTTCCACACTGTTGTATTATAA-
gi|8 : tT-CATTGC-------CAT---TTAGTGTTT------G-----A-TTTT-GAT--ATTA---AGTAGAAGCATGA-TAAAATATT--------GTGACAAGCTA--TTTCAA------AA---GGTTAA---ATGCGTACAAA---ACACATTTTCTAC-----AGCTACGTTAAA---A----AAGGCAAT-GAAATTTCATCAAATAAGTCAAAACTAA-ATGAA--GATAAACCTATTTACTTTT-TACCTATCAGATAGTATCTGTCAGAA-AT-TATTGCTGACAGGCATTTTG-------AGATa
gi|9 : C-------AAAT---TCCCATTT-TATCTC-------TATA-TATGGTGTCT--ATCCG-----A-TGCC-CTT--ATTA---AGCAGGAG-ATGA-----AT-TT---AC--A---AC--GC-G--T-----------GA------CA----ACCTATTTAAATAT--------TGTGC-----AGCTACGCT--A---A----AAAGCAATTGA-ATCCCATTAAGTAAGTCAAA-TTTA-AAAAAAGAATGA-CTTA-TTAATTTTTTACCT-------------TGTAAGAA
Alignments
lowQualScore : 333333333333333 11111 22222222 111111 11111 11111111111 1 111111 3333333333333 1 2222222 11 11 1 1111 11 1 11 11 1111 22222 11 2222222 11 1111 111111 111111
lowQualScore : 8888888 444 22 1 888888888888888 4 00000 2 2 33 555 3 1 4 44444444 55 55 1 555555 9999 9999 5 0 0 44 44444 0 55555555555 0 5 2 1 66 6 5 5 6 444444 1 1 6666666666666 0 8 8 1 6666666 1 4 3 33 0 33 0 2222 3 88 3 3 1 7 1 7 88 0 2 1 0 1 11 2222 3 77 0 777 6 3 5 44444 5 1 11 9999 66 0 2 3333333 999 888 11 5 1 0 777 888 1 5555 88 0 4 7 1 4 1 1 0 0 0 1 5 3 77 888 1 6 5 1 2222 77 5 4 4 4 11 888888 66 666666
lowQualScore : ....... ... .. . ............... . ..... . . .. ... . . . ........ .. .. . ...... .... .... . . . .. ..... . ........... . . . . .. . . . . ...... . . ............. . . . . ....... . . . .. . .. . .... . .. . . . . . . .. . . . . . .. .... . .. . ... . . . ..... . . .. .... .. . . ....... ... ... .. . . . ... ... . .... .. . . . . . . . . . . . . . .. ... . . . . .... .. . . . . .. ...... .. ......
lowQualScore : 7777777 777 99 4 777777777777777 1 00000 9 9 99 000 8 0 0 22222222 55 55 4 555555 4444 8888 2 9 1 00 33333 7 99999999999 4 7 4 0 66 6 4 7 7 000000 0 0 7777777777777 0 0 0 0 0000000 4 2 2 88 2 88 0 0000 7 33 7 3 0 3 0 3 33 7 5 0 8 4 00 2222 0 99 7 888 6 4 0 44444 0 0 99 0000 99 1 8 1111111 111 888 99 0 0 2 111 888 0 0000 66 2 5 6 6 3 3 0 4 7 7 0 7 0 99 999 0 6 7 7 1111 99 0 4 4 4 77 999999 11 444444
consensus : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------CATA-TTTAACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTNGTGC-----AGCTACGCTNNA---A----AAAGCAAT-GATATNTCGTTNAGTAAGTCAAANTTTA-AAAAA-AACAA-CCAAGTTACTTTTCTACCT-------------TGTCAGAACAT-T-CTGATGACGGCCATTTTG-------AAATATAACGGGATCTCGCGAGAATGGAATG--AGACTTCCGATTTCCATATTT--GG-TTTGTTTACTATGATTGTTGTTTACGAATGAAAATCTGACGTATGGCGGGAAACACACAC--AATTCG-CATTNTATTTATTAAACCAGTTGGTAGGACGCCCAAAGCATCNTTTCCGTCACATATGAGGCTTATAATGTTCTTCTGTTCTTT--AAGCTGGATTCCGAAGCATTGTTTCTCTAAAACTCTTTGTAAACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTNCCTTATATGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAATGTTAACGG-AG-----GT-ANA--TTTT---A--TTTNGAT-------TTACCG--CAA---CACAA--TA-AGNAGGTTTTTG--A---ANAACGGTTAAT-TAAACCCTCAAAAACGTTTTACCGATTATTTNAACGGCTACAGGTTAGAGANAAA-CGAT--ATATTGTN--GCAACCATNACGTTTTATAGCCGCTAAA-AATG----TCGAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCGTGACG-----AGA--GGGTATCGAGTCAAAGGT------AGTAATATTATTT
Reference ( family-930 ) : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------CATA-TTTAACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTNGTGC-----AGCTACGCTNNA---A----AAAGCAAT-GATATNTCGTTNAGTAAGTCAAANTTTA-AAAAA-AACAA-CCAAGTTACTTTTCTACCT-------------TGTCAGAACAT-T-CTGATGACGGCCATTTTG-------AAATATAACGGGATCTCGCGAGAATGGAATG--AGACTTCCGATTTCCATATTT--GG-TTTGTTTACTATGATTGTTGTTTACGAATGAAAATCTGACGTATGGCGGGAAACACACAC--AATTCG-CATTNTATTTATTAAACCAGTTGGTAGGACGCCCAAAGCATCNTTTCCGTCACATATGAGGCTTATAATGTTCTTCTGTTCTTT--AAGCTGGATTCCGAAGCATTGTTTCTCTAAAACTCTTTGTAAACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTNCCTTATATGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAATGTTAACGG-AG-----GT-ANA--TTTT---A--TTTNGAT-------TTACCG--CAA---CACAA--TA-AGNAGGTTTTTG--A---ANAACGGTTAAT-TAAACCCTCAAAAACGTTTTACCGATTATTTNAACGGCTACAGGTTAGAGANAAA-CGAT--ATATTGTN--GCAACCATNACGTTTTATAGCCGCTAAA-AATG----TCGAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCGTGACG-----AGA--GGGTATCGAGTCAAAGGT------AGTAATATTATTT
gi|1 : TAGTTTCAATACAGAAACAG-------ACAT---TCCCATTT-CATTCC-------CATAATTTAACGTTTGAATTCG-----A-TGTT-CAT--ATTA---AGTAGAAGCAGGATTAAACT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTAGTAT-----AAATACACTTCA---A----AAAGTAAT-GATGTTTTGTTTAGTAAGTCAAACTTTATAAAAA-AACAA-CCAAATTATTTTTCTACCA-------------TGTCAAAACAT-T-CTGATGACGGCCATTTTA-------AAAAATAACAGGAACCTGCGAGAATGGAATA--ACACTTCCGATTTCAATAATT--TG-TTTGTTTACTATGATTGTTGTT-ACGAATGAAAATCTGACGTATGGCAGGATACACACAC--AATTCG-CATTTTATTTATTCAACCAGTTGGTAGGACGCCCAAAGCATCATTTCCGTCACATATGAGGCTTATAATCTTCTTCTGTTCTTC--AAGCTGGATTCCGAAGCATTGTTTCTCTGAAACTCTTTGTATACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTATTGCTTTACTACGATTACCTTATTTGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAATGCTAGCGA-AG-----GT-ACA--TTTT---A--TTTCGAT-------TTACCG--CAA---CACAA--TA-AGAAGGTTTTTG--A---ATAACTGTTAAT-TAAACCCTCAAAAACATTTTACAGATTATGTAAACAGCTACGGGTTAGAGATAAA-CAAT--ATATTGTA--GCAACCATAATGTTTTATAGCCGCTAAA-AATG----TCAAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCACACTGCTCCATTACAA-CCGTATGCATCGATTTACTACCGTGACA-----AGA--GGGTATGAAGTCAAAGGT------AGTAATATTATTT
gi|10 : AGTTTCAATACCGAAATTC-------AAAT---TCCCATTT-CATTCC-------CAC---TTAACTTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGAAGCA--ATCAAAGG-T--------AGTTAT--ATTA--TTTTTA------GA---TTT
gi|11 : --TTTAGGTCCATTTTCAAATTT--CA------AGT---CGAATGAAAACGG-AG-----GT-AAA--TTGA---A--T----AT-------TTACAA--AAAAAACAAAA--CA-AAAA----------A---AAAACAAATAAA-AAAAGTTT--AAAACACAAAACCAATTATTTCAACGACTACATGTTCGAGATAAATCGA-----GTTGTGCTGCAACCATCATGTTTGATgagggtgtacatatttgtacatggttacatacatgtgtgtaaaaattacatatttgatttatctaatatttcagtaaactt
gi|12 : atacaaAATACAGAAATGC-------CAAT---TCTAATTTTCATTTTAAAAAAACA------AACGTTTAAATTTG-----A-TGTT-CAT--TTTA---AATAGGAGCATGACTTAAGT-TT-------CCTGAC--AATAAGTTTTAAT-----G-----TTC-----ACC------AACATATGTATTTTATGC-----AGCAACGCTAGA---A----ATAGAAAG-GA-ATCTTAT--GGTTATTCAAAATTTA-AAAAcaccaa
gi|13 : TCAATACAGAAA-------------T---TTCTATTT-CATTCT-------CAT---TTAATGTTCTAATTTA-----A-TGTTTCATGAATTATAGAGTATGAGTAGGACTAAAAT-TT---CA--TGACAA--GCTG----TGAA------GATTGAGTAAT---ACCT
gi|14 : ATGTTTTATAGCCGCTAAA-A-TG----TCGGAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCAGCACTGCTTCATTACAA-CCATATGCATCGATTAACTACCGTAACG-----AGA--GGGTATCAAGTCATAGGT------AGTAATATTATTTtcaatgggatattgagtttagtgtcctttatgtgcttcattaaagccagtattg
gi|15 : aGTTTCAATGCAGAAGCGC-------ACAT---TCCCATTT-CATTCC-------CAT---TTAACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCCATATATATATATc
gi|16 : -AAAACTTT-CAAAGAGTGAATAGCATCGGCAATGCTCCATTACAA-GGTTATGTATTGATTTAGAACCATGAAGGATGCAGA--GGGT
gi|17 : AGTA-CCGAATGTTAACGG-AA-----GT-ATACATTTT---A--TTTCGAT-------TTACCG--CAA---CACAA--TT-AGGAGGTTTTTA--A---ATAATGTTTTAT---AGCCGCTAAAAcaaactaagatggatttactatttc
gi|18 : AGTTTCAATACAGACACGC-------ACAT---TCCCATTT-CATTCC-------CATt
gi|18 : ATTTACT-----GACT-----AGA--GGGTATCGAGTCAAAGGTACCTGAAGTAATATTATTTttactgactagagggtatcgagtcaaaggtacctgaagtaatattattt
gi|19 : agtttcaatacagacacgcacattcccatttcattcccAGTTTCAATACAGAAACAC-------ACAT---TTCCATTT-CATTCC-------CATG----GATGTAGCAAGTCGT----ATTGTT-TAT--ACTA---A
gi|2 : GTTTCAATACAGAATAGC-------ACAT---TCCCATT------------------A----AACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGAAGCAGAACTAAAAT-TT---AG--AGTCAC--ACTA--TTTCAA------GA---ATTCAT---ACCTATATAAATAAATATCCTTAGTAT-----AAATATACTTTACAAATTTTAAAGTAAT-ATTATATTGTTTAGTAAGTCAAACTTTA-AAAAA-AACTA-CCAAGTTACTTTTCTACCT-------------TGTCAAAACAT-T-CTGATGACAGTCATTTTG-------AAATATAACAGGATCTCGTGAGAATGGAACG--AGATTTCCGGTTTTCATATTTCCGG-TTTGTTTACTGTGATTGTTGTTTACGAATGAAAATTTGACGTATGGTGAGAAACACAAACGGAATGAGACATTCCA------AAAACAGTTGGTAAGACGCCCAAAGCATCCGTTCCGTCACATATGAGGCTTTTAATGTTCTTCTGTTCTTTTTAAGCTGGATTCCGAAGCAATATTTCTCTAAAACTCTTTGTAAACACTGGTTGAAATTAAGGTCCGCCATTGTGTTTTTATTTTACTACGATTTCCTTATTTGG--TAAACT-C--TTAAGCGCCGCCCAAAAATTT--TAGCCGAAAGTATCCGAATGTTAACGGTAGT----AT-ACA--TTTT---A--TTTGGAT-------TTACCG--CAA---CACAA--TA-TGT-GTTTTTTT--A---ATAACGGTTAAT-TAAACCCTCAAAAACGTTTGACAGATTATGTAAACAGCTACAGGTTAGAGAAAAA-CGAT--ATACTGTA--GCAAACATAATGTTTTATAGCCGTTTAA-AATG----TCAAAGTACCTGAAAAATCTTGCAGA-AGTGAATAGCTGCCACACTGCTCCATTACAA-CCATGTGCATCGATTTACTACCGTGACG-----AGA--GGCTATCGAGTCAAAAGT------AGTTATATCATTTactaaaggtagtaatat
gi|20 : TAGTTTCAGTACAGAAATGCCAGATTCAAATAAATCCCATTT-CATTCC-------C--A-TTAAACGTTTCAAT--G-----G-TATT-TGT--AATA---
gi|21 : CCTTGCAGA-TGAGAATAGCCTCCGAGCTGCTCC--------------------ATTTACTATGGAGAC------AGA--AGA-ACGGAGGCAATGGT------AATAATATTATTTcaaaat
gi|22 : GTTTCGATACAGAAACGC-------ACAT---AACTATTA-AATTCC-------CAT--TTAAACATTTTAATTCA-----A-TGTT-CCT--GTT------TAGGAGCAAGACTc
gi|23 : TTCAATACAGAAATGC-------ACAT---TCCCATTT----------------------AACAATTCAATTTG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACT
gi|24 : TGGTTTCAATACAGAAACTC-------ACAT---TCCTATTT-CATT-C-------CA-A-TTTAAC
gi|25 : GTTTCTA-ACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------C--A-TTTAACATagatggcagtaa
gi|26 : -----AGA--GGGTATCGAGTTAAAGGT------AGTAATATTATTTgaccaga
gi|3 : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT----------------------AACATTTTAATTCG-----A-TGTT-CAT--ATTT---AATAGGAGCAGGACTAAAAT-TT---AG--TGTCGC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTAGTGT-----AAATACGCTTCA---A----AAAGTAAT-GTTATATTGTTTAGTAAGTCAAA-TTTA-AAAAA-AAAAA-ACAAGTTTCTTTTCTACCT-------------TGTCAAAACAT-T-CTGATGATGGCCATTTTA-------AAAAATACTGGGGTCTCGCGAGAATGGAATG--AGACATCCGATTTCCATATTT--GG-TTTGTTTACTAGGATTGTT---TACGAATGAAAATCTGACATATGGCTGGAAACACACAC--AACTTG-CATAATATTTATTAAACCAGTAGGTAGGACGCCCAAAGCATCTTTTCTGTCACATATGAGGCTAAAAATGT--TTTTGTTCTTT--AAACTGGATTCGGAAGCATTGTTTCTCTAAAACTCTTTGCAAACAGTGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTGCTTTATATGG--TAGACT-C--TGTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATACAAATTTTTATGA-AACT---AT-ACA--TTTT---A--TTTTGAT-------TTACCG--CAA---CACAA--TA-AGGAGATTTTTG--A---ATAACAGTTAAT-TAAACCCTCAAAAATCTTTTACAGATTATGTAAACAGCTCAAGGTTAGAGCTAAA-CGAT--ATATTGTA--GCAACAACCATGTTTTATAGCCGCTAAA-AATG----TCAAAGTACCTG-AAAACCTTGCAGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCATGACG-----AGA--GGGTATCGAGTCAAAGGT------TATAATATTATTT
gi|4 : tATTACTTTATATAG--AATACA-G--TTTAGCTCCGCCAATAA-TTTGCTAGTCGAAAGTATTTTAATGT--A-GA-AGTACTTGT-AAA--TGCT---AATCTTGAATAGAATAGTTACCAAATAA---CACAG--CATAGTAGGTGTTTG--ATAGAAAAAGG--AGT-TACGCACTCAAACATTGTTTGCCGCTCATTGCATTCATCAAAGATTAGA-AGTAA-C-AT--TTATTTTT--GCAACCATTACGTTTTATGTCCGGTAAATAACA----TTG---------------CTCGCT----CTGGATAACGTCCACGCTG--CAACTACAAGGCA-ATACATCGGCTAACAACCGCCACAT----AGATGGGGTATC
gi|5 : CCATTTT---TTCACCTTACTGCGATTTCCT-ATATAGACTAGAATACGATTTAGCTCTGCTCACAAATT------CTGAGG------GAATGTAAATGG-AA-----GT-GAA--TTTGAAAA--TGGAAAT-------TTA-CA--CAA----ACAAATTA-A-CATGTATTTA--A---AAAACAATGAATAAAAACACTCAGAAACATTTTATCAATTATTTTAAAGACTACAGGGTGGACAAAAA-TCAT--ATTTTCTT--GCAACCATAACTTCTGATAGCCGATACA-TTTT----CTCTATTAACTG-AAAACCTTGCAGA-AATAAATAGCTTCCATACTTCTCAACTGAAA-C
gi|6 : aGTTTCAACTTGTCGTCA-TGTT-TAT--ATTT---AGTAAGAGCATGGCTAAAAT-TTCGTGACTAGTC-----TTA--TTAAAAAAGCTTGA---ATGCATCTAACC-ATATGC-CATCTGTATTTT-TACTTTTTAGCTGCACTCAA---G----AAAACAAT-GAAATTTCATGAAGTAAGTCAAAGTT---AAAAA-ATCAA----------TTTCCTACCA-------------TGTTAGAA-ATAT-CTTTTGAGAGCCATTTTGAAATATAAAATATAACTGGATATTCCAAGAA--AAATGTTGAACTTCAAATTTCCATATTT--GGCTTTATT
gi|7 : taagtgtgagtCCA-AAATTT--GCGATGAGTGTATGTGAATATGAAAGG-AA-----GTTATAA-TTTG---A--TTTGAATAG-----TTACC---CAA---AACAAA-TT-AGCAGGTTTTTGCAA---ACAA--ACTGAT-TATACTCT---------------GATTATTTGGATGACTAAATGTTGGAGAGAAA-TGATAAATATCATT--GCAACCATTACATTTGATAGACG--ACA-AATGTTCATCTAAATGTTGG-AATACTTTGCTGT-AGTGACTAGTTTCCACACTGTTGTATTATAA-
gi|8 : tT-CATTGC-------CAT---TTAGTGTTT------G-----A-TTTT-GAT--ATTA---AGTAGAAGCATGA-TAAAATATT--------GTGACAAGCTA--TTTCAA------AA---GGTTAA---ATGCGTACAAA---ACACATTTTCTAC-----AGCTACGTTAAA---A----AAGGCAAT-GAAATTTCATCAAATAAGTCAAAACTAA-ATGAA-GATAAACCTATTTACTTTT-TACCTATCAGATAGTATCTGTCAGAA-AT-TATTGCTGACAGGCATTTTG-------AGATa
gi|9 : C-------AAAT---TCCCATTT-TATCTC-------TATA-TATGGTGTCT--ATCCG-----A-TGCC-CTT--ATTA---AGCAGGAG-ATGA-----AT-TT---AC--A---AC--GC-G--T-----------GA------CA----ACCTATTTAAATAT--------TGTGC-----AGCTACGCT--A---A----AAAGCAATTGA-ATCCCATTAAGTAAGTCAAATTTAA-AAAAAGAATGA-CTTA-TTAATTTTTTACCT-------------TGTAAGAA
Alignments
lowQualScore : 333333333333333 11111 22222222 111111 11111 11111111111 1 111111 3333333333333 1 2222222 11 11 1 1111 11 1 11 11 1111 22222 11 2222222 11 1111 111111 111111
lowQualScore : 8888888 444 22 1 888888888888888 4 00000 2 2 33 555 3 1 4 44444444 55 55 1 555555 9999 9999 5 0 0 44 44444 0 55555555555 0 5 2 1 66 6 5 5 6 444444 1 1 6666666666666 0 8 8 1 6666666 1 4 3 33 0 33 0 2222 3 88 3 3 1 7 1 7 88 0 2 1 0 1 11 2222 3 77 0 777 6 3 5 44444 5 1 11 9999 66 0 2 3333333 999 888 11 5 1 0 777 888 1 5555 88 0 4 7 1 4 1 1 0 0 0 1 5 3 77 888 1 6 5 1 2222 77 5 4 4 4 11 888888 66 666666
lowQualScore : ....... ... .. . ............... . ..... . . .. ... . . . ........ .. .. . ...... .... .... . . . .. ..... . ........... . . . . .. . . . . ...... . . ............. . . . . ....... . . . .. . .. . .... . .. . . . . . . .. . . . . . .. .... . .. . ... . . . ..... . . .. .... .. . . ....... ... ... .. . . . ... ... . .... .. . . . . . . . . . . . . . .. ... . . . . .... .. . . . . .. ...... .. ......
lowQualScore : 7777777 777 99 4 777777777777777 1 00000 9 9 99 000 8 0 0 22222222 55 55 4 555555 4444 8888 2 9 1 00 33333 7 99999999999 4 7 4 0 66 6 4 7 7 000000 0 0 7777777777777 0 0 0 0 0000000 4 2 2 88 2 88 0 0000 7 33 7 3 0 3 0 3 33 7 5 0 8 4 00 2222 0 99 7 888 6 4 0 44444 0 0 99 0000 99 1 8 1111111 111 888 99 0 0 2 111 888 0 0000 66 2 5 6 6 3 3 0 4 7 7 0 7 0 99 999 0 6 7 7 1111 99 0 4 4 4 77 999999 11 444444
consensus : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------CATA-TTTAACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTNGTGC-----AGCTACGCTNNA---A----AAAGCAAT-GATATNTCGTTNAGTAAGTCAAANTTTA-AAAAA-AACAA-CCAAGTTACTTTTCTACCT-------------TGTCAGAACAT-T-CTGATGACGGCCATTTTG-------AAATATAACGGGATCTCGCGAGAATGGAATG--AGACTTCCGATTTCCATATTT--GG-TTTGTTTACTATGATTGTTGTTTACGAATGAAAATCTGACGTATGGCGGGAAACACACAC--AATTCG-CATTNTATTTATTAAACCAGTTGGTAGGACGCCCAAAGCATCNTTTCCGTCACATATGAGGCTTATAATGTTCTTCTGTTCTTT--AAGCTGGATTCCGAAGCATTGTTTCTCTAAAACTCTTTGTAAACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTNCCTTATATGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAATGTTAACGG-AG-----GT-ANA--TTTT---A--TTTNGAT-------TTACCG--CAA---CACAA--TA-AGNAGGTTTTTG--A---ANAACGGTTAAT-TAAACCCTCAAAAACGTTTTACCGATTATTTNAACGGCTACAGGTTAGAGANAAA-CGAT--ATATTGTN--GCAACCATNACGTTTTATAGCCGCTAAA-AATG----TCGAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCGTGACG-----AGA--GGGTATCGAGTCAAAGGT------AGTAATATTATTT
Reference ( family-930 ) : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------CATA-TTTAACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTNGTGC-----AGCTACGCTNNA---A----AAAGCAAT-GATATNTCGTTNAGTAAGTCAAANTTTA-AAAAA-AACAA-CCAAGTTACTTTTCTACCT-------------TGTCAGAACAT-T-CTGATGACGGCCATTTTG-------AAATATAACGGGATCTCGCGAGAATGGAATG--AGACTTCCGATTTCCATATTT--GG-TTTGTTTACTATGATTGTTGTTTACGAATGAAAATCTGACGTATGGCGGGAAACACACAC--AATTCG-CATTNTATTTATTAAACCAGTTGGTAGGACGCCCAAAGCATCNTTTCCGTCACATATGAGGCTTATAATGTTCTTCTGTTCTTT--AAGCTGGATTCCGAAGCATTGTTTCTCTAAAACTCTTTGTAAACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTNCCTTATATGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAATGTTAACGG-AG-----GT-ANA--TTTT---A--TTTNGAT-------TTACCG--CAA---CACAA--TA-AGNAGGTTTTTG--A---ANAACGGTTAAT-TAAACCCTCAAAAACGTTTTACCGATTATTTNAACGGCTACAGGTTAGAGANAAA-CGAT--ATATTGTN--GCAACCATNACGTTTTATAGCCGCTAAA-AATG----TCGAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCGTGACG-----AGA--GGGTATCGAGTCAAAGGT------AGTAATATTATTT
gi|1 : TAGTTTCAATACAGAAACAG-------ACAT---TCCCATTT-CATTCC-------CATAATTTAACGTTTGAATTCG-----A-TGTT-CAT--ATTA---AGTAGAAGCAGGATTAAACT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTAGTAT-----AAATACACTTCA---A----AAAGTAAT-GATGTTTTGTTTAGTAAGTCAAACTTTATAAAAA-AACAA-CCAAATTATTTTTCTACCA-------------TGTCAAAACAT-T-CTGATGACGGCCATTTTA-------AAAAATAACAGGAACCTGCGAGAATGGAATA--ACACTTCCGATTTCAATAATT--TG-TTTGTTTACTATGATTGTTGTT-ACGAATGAAAATCTGACGTATGGCAGGATACACACAC--AATTCG-CATTTTATTTATTCAACCAGTTGGTAGGACGCCCAAAGCATCATTTCCGTCACATATGAGGCTTATAATCTTCTTCTGTTCTTC--AAGCTGGATTCCGAAGCATTGTTTCTCTGAAACTCTTTGTATACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTATTGCTTTACTACGATTACCTTATTTGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAATGCTAGCGA-AG-----GT-ACA--TTTT---A--TTTCGAT-------TTACCG--CAA---CACAA--TA-AGAAGGTTTTTG--A---ATAACTGTTAAT-TAAACCCTCAAAAACATTTTACAGATTATGTAAACAGCTACGGGTTAGAGATAAA-CAAT--ATATTGTA--GCAACCATAATGTTTTATAGCCGCTAAA-AATG----TCAAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCACACTGCTCCATTACAA-CCGTATGCATCGATTTACTACCGTGACA-----AGA--GGGTATGAAGTCAAAGGT------AGTAATATTATTT
gi|10 : AGTTTCAATACCGAAATTC-------AAAT---TCCCATTT-CATTCC-------CAC---TTAACTTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGAAGCA--ATCAAAGG-T--------AGTTAT--ATTA--TTTTTA------GA---TTT
gi|11 : --TTTAGGTCCATTTTCAAATTT--CA------AGT---CGAATGAAAACGG-AG-----GT-AAA--TTGA---A--T----AT-------TTACAA--AAAAAACAAAA--CA-AAAA----------A---AAAACAAATAAA-AAAAGTTT--AAAACACAAAACCAATTATTTCAACGACTACATGTTCGAGATAAATCGA-----GTTGTGCTGCAACCATCATGTTTGATgagggtgtacatatttgtacatggttacatacatgtgtgtaaaaattacatatttgatttatctaatatttcagtaaactt
gi|12 : atacaaAATACAGAAATGC-------CAAT---TCTAATTTTCATTTTAAAAAAACA------AACGTTTAAATTTG-----A-TGTT-CAT--TTTA---AATAGGAGCATGACTTAAGT-TT-------CCTGAC--AATAAGTTTTAAT-----G-----TTC-----ACC------AACATATGTATTTTATGC-----AGCAACGCTAGA---A----ATAGAAAG-GA-ATCTTAT--GGTTATTCAAAATTTA-AAAAcaccaa
gi|13 : TCAATACAGAAA-------------T---TTCTATTT-CATTCT-------CAT---TTAATGTTCTAATTTA-----A-TGTTTCATGAATTATAGAGTATGAGTAGGACTAAAAT-TT---CA--TGACAA--GCTG----TGAA------GATTGAGTAAT---ACCT
gi|14 : ATGTTTTATAGCCGCTAAA-A-TG----TCGGAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCAGCACTGCTTCATTACAA-CCATATGCATCGATTAACTACCGTAACG-----AGA--GGGTATCAAGTCATAGGT------AGTAATATTATTTtcaatgggatattgagtttagtgtcctttatgtgcttcattaaagccagtattg
gi|15 : aGTTTCAATGCAGAAGCGC-------ACAT---TCCCATTT-CATTCC-------CAT---TTAACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCCATATATATATATc
gi|16 : -AAAACTTT-CAAAGAGTGAATAGCATCGGCAATGCTCCATTACAA-GGTTATGTATTGATTTAGAACCATGAAGGATGCAGA--GGGT
gi|17 : AGTA-CCGAATGTTAACGG-AA-----GT-ATACATTTT---A--TTTCGAT-------TTACCG--CAA---CACAA--TT-AGGAGGTTTTTA--A---ATAATGTTTTAT---AGCCGCTAAAAcaaactaagatggatttactatttc
gi|18 : AGTTTCAATACAGACACGC-------ACAT---TCCCATTT-CATTCC-------CATt
gi|18 : ATTTACT-----GACT-----AGA--GGGTATCGAGTCAAAGGTACCTGAAGTAATATTATTTttactgactagagggtatcgagtcaaaggtacctgaagtaatattattt
gi|19 : agtttcaatacagacacgcacattcccatttcattcccAGTTTCAATACAGAAACAC-------ACAT---TTCCATTT-CATTCC-------CATG----GATGTAGCAAGTCGT----ATTGTT-TAT--ACTA---A
gi|2 : GTTTCAATACAGAATAGC-------ACAT---TCCCATT------------------A----AACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGAAGCAGAACTAAAAT-TT---AG--AGTCAC--ACTA--TTTCAA------GA---ATTCAT---ACCTATATAAATAAATATCCTTAGTAT-----AAATATACTTTACAAATTTTAAAGTAAT-ATTATATTGTTTAGTAAGTCAAACTTTA-AAAAA-AACTA-CCAAGTTACTTTTCTACCT-------------TGTCAAAACAT-T-CTGATGACAGTCATTTTG-------AAATATAACAGGATCTCGTGAGAATGGAACG--AGATTTCCGGTTTTCATATTTCCGG-TTTGTTTACTGTGATTGTTGTTTACGAATGAAAATTTGACGTATGGTGAGAAACACAAACGGAATGAGACATTCCA------AAAACAGTTGGTAAGACGCCCAAAGCATCCGTTCCGTCACATATGAGGCTTTTAATGTTCTTCTGTTCTTTTTAAGCTGGATTCCGAAGCAATATTTCTCTAAAACTCTTTGTAAACACTGGTTGAAATTAAGGTCCGCCATTGTGTTTTTATTTTACTACGATTTCCTTATTTGG--TAAACT-C--TTAAGCGCCGCCCAAAAATTT--TAGCCGAAAGTATCCGAATGTTAACGGTAGT----AT-ACA--TTTT---A--TTTGGAT-------TTACCG--CAA---CACAA--TA-TGT-GTTTTTTT--A---ATAACGGTTAAT-TAAACCCTCAAAAACGTTTGACAGATTATGTAAACAGCTACAGGTTAGAGAAAAA-CGAT--ATACTGTA--GCAAACATAATGTTTTATAGCCGTTTAA-AATG----TCAAAGTACCTGAAAAATCTTGCAGA-AGTGAATAGCTGCCACACTGCTCCATTACAA-CCATGTGCATCGATTTACTACCGTGACG-----AGA--GGCTATCGAGTCAAAAGT------AGTTATATCATTTactaaaggtagtaatat
gi|20 : TAGTTTCAGTACAGAAATGCCAGATTCAAATAAATCCCATTT-CATTCC-------C--A-TTAAACGTTTCAAT--G-----G-TATT-TGT--AATA---
gi|21 : CCTTGCAGA-TGAGAATAGCCTCCGAGCTGCTCC--------------------ATTTACTATGGAGAC------AGA--AGA-ACGGAGGCAATGGT------AATAATATTATTTcaaaat
gi|22 : GTTTCGATACAGAAACGC-------ACAT---AACTATTA-AATTCC-------CAT--TTAAACATTTTAATTCA-----A-TGTT-CCT--GTT------TAGGAGCAAGACTc
gi|23 : TTCAATACAGAAATGC-------ACAT---TCCCATTT----------------------AACAATTCAATTTG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACT
gi|24 : TGGTTTCAATACAGAAACTC-------ACAT---TCCTATTT-CATT-C-------CA-A-TTTAAC
gi|25 : GTTTCTA-ACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------C--A-TTTAACATagatggcagtaa
gi|26 : -----AGA--GGGTATCGAGTTAAAGGT------AGTAATATTATTTgaccaga
gi|3 : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT----------------------AACATTTTAATTCG-----A-TGTT-CAT--ATTT---AATAGGAGCAGGACTAAAAT-TT---AG--TGTCGC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTAGTGT-----AAATACGCTTCA---A----AAAGTAAT-GTTATATTGTTTAGTAAGTCAAA-TTTA-AAAAA-AAAAA-ACAAGTTTCTTTTCTACCT-------------TGTCAAAACAT-T-CTGATGATGGCCATTTTA-------AAAAATACTGGGGTCTCGCGAGAATGGAATG--AGACATCCGATTTCCATATTT--GG-TTTGTTTACTAGGATTGTT---TACGAATGAAAATCTGACATATGGCTGGAAACACACAC--AACTTG-CATAATATTTATTAAACCAGTAGGTAGGACGCCCAAAGCATCTTTTCTGTCACATATGAGGCTAAAAATGT--TTTTGTTCTTT--AAACTGGATTCGGAAGCATTGTTTCTCTAAAACTCTTTGCAAACAGTGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTGCTTTATATGG--TAGACT-C--TGTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATACAAATTTTTATGA-AACT---AT-ACA--TTTT---A--TTTTGAT-------TTACCG--CAA---CACAA--TA-AGGAGATTTTTG--A---ATAACAGTTAAT-TAAACCCTCAAAAATCTTTTACAGATTATGTAAACAGCTCAAGGTTAGAGCTAAA-CGAT--ATATTGTA--GCAACAACCATGTTTTATAGCCGCTAAA-AATG----TCAAAGTACCTG-AAAACCTTGCAGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCATGACG-----AGA--GGGTATCGAGTCAAAGGT------TATAATATTATTT
gi|4 : tATTACTTTATATAG--AATACA-G--TTTAGCTCCGCCAATAA-TTTGCTAGTCGAAAGTATTTTAATGT--A-GA-AGTACTTGT-AAA--TGCT---AATCTTGAATAGAATAGTTACCAAATAA---CACAG--CATAGTAGGTGTTTG--ATAGAAAAAGG--AGT-TACGCACTCAAACATTGTTTGCCGCTCATTGCATTCATCAAAGATTAGA-AGTAA-C-AT--TTATTTTT--GCAACCATTACGTTTTATGTCCGGTAAATAACA----TTG---------------CTCGCT----CTGGATAACGTCCACGCTG--CAACTACAAGGCA-ATACATCGGCTAACAACCGCCACAT----AGATGGGGTATC
gi|5 : CCATTTT---TTCACCTTACTGCGATTTCCT-ATATAGACTAGAATACGATTTAGCTCTGCTCACAAATT------CTGAGG------GAATGTAAATGG-AA-----GT-GAA--TTTGAAAA--TGGAAAT-------TTA-CA--CAA----ACAAATTA-A-CATGTATTTA--A---AAAACAATGAATAAAAACACTCAGAAACATTTTATCAATTATTTTAAAGACTACAGGGTGGACAAAAA-TCAT--ATTTTCTT--GCAACCATAACTTCTGATAGCCGATACA-TTTT----CTCTATTAACTG-AAAACCTTGCAGA-AATAAATAGCTTCCATACTTCTCAACTGAAA-C
gi|6 : aGTTTCAACTTGTCGTCA-TGTT-TAT--ATTT---AGTAAGAGCATGGCTAAAAT-TTCGTGACTAGTC-----TTA--TTAAAAAAGCTTGA---ATGCATCTAACC-ATATGC-CATCTGTATTTT-TACTTTTTAGCTGCACTCAA---G----AAAACAAT-GAAATTTCATGAAGTAAGTCAAAGTT---AAAAA-ATCAA----------TTTCCTACCA-------------TGTTAGAA-ATAT-CTTTTGAGAGCCATTTTGAAATATAAAATATAACTGGATATTCCAAGAA--AAATGTTGAACTTCAAATTTCCATATTT--GGCTTTATT
gi|7 : taagtgtgagtCCA-AAATTT--GCGATGAGTGTATGTGAATATGAAAGG-AA-----GTTATAA-TTTG---A--TTTGAATAG-----TTACC---CAA---AACAAA-TT-AGCAGGTTTTTGCAA---ACAA--ACTGAT-TATACTCT---------------GATTATTTGGATGACTAAATGTTGGAGAGAAA-TGATAAATATCATT--GCAACCATTACATTTGATAGACG--ACA-AATGTTCATCTAAATGTTGG-AATACTTTGCTGT-AGTGACTAGTTTCCACACTGTTGTATTATAA-
gi|8 : tT-CATTGC-------CAT---TTAGTGTTT------G-----A-TTTT-GAT--ATTA---AGTAGAAGCATGA-TAAAATATT--------GTGACAAGCTA--TTTCAA------AA---GGTTAA---ATGCGTACAAA---ACACATTTTCTAC-----AGCTACGTTAAA---A----AAGGCAAT-GAAATTTCATCAAATAAGTCAAAACTAA-ATGAA-GATAAACCTATTTACTTTT-TACCTATCAGATAGTATCTGTCAGAA-AT-TATTGCTGACAGGCATTTTG-------AGATa
gi|9 : C-------AAAT---TCCCATTT-TATCTC-------TATA-TATGGTGTCT--ATCCG-----A-TGCC-CTT--ATTA---AGCAGGAG-ATGA-----AT-TT---AC--A---AC--GC-G--T-----------GA------CA----ACCTATTTAAATAT--------TGTGC-----AGCTACGCT--A---A----AAAGCAATTGA-ATCCCATTAAGTAAGTCAAATTTAA-AAAAAGAATGA-CTTA-TTAATTTTTTACCT-------------TGTAAGAA
blockSeqs : CAGATTC AAA TC C AAAAAAACA C TCGTC T T GA TAG T T A CGTGACTA AA AG T AAGCTT TTGA TCTA T TA TTTTT TTACAAATTTT T T C TT A T . G ACCTAT C C ATCAGATAGTATC C A A A AAATATA T A T TT CC C GTTT G GG A A C T C T TT G T T AC ACGA C GC ATC A C T TACTT T A CA GAAA AT C AGAATAG AAA AAA AT T A GCA TAG A CAAA AA T A A C T C T T G AA GCT C C T A TTCA GG A G G G AT GGATGC TG ACCTGA
blockSeqs : . . C T TATATAT A T . . . . G C . CAT . . T T T T C AG . AGAA . T A TT C T . . CCAAG C C . C . . A . A G T . . . T T . T . A . T . . G G A . C A . ATA T C . CT . T A A . G AG A . A . G A . T TGTT A C G G A G A A . G . A A T . A . AA . A . . TT AT . .
blockSeqs : . . C C CATTTA T . . . . . G C . AAA . . G . A T T AG . TCAA . A A GA G T . . ACAAG C C . . . . T . T T . . . . . A A . C C . ATT T C . T . C . T . T . G . . . T T . T CGGT T C C T A G A T . G . A C C . A . AA . A . . AT G . .
blockSeqs : . . C C CAATTT C . . . . . G C . AGA . . T . A T T TC . CAAG . A T CA A A . . CTTA A T . . . . C . T T A . G T . ATG T T . . . C . T . G . G . . . G G . T CAGT T C T T C T C G . C . T T G . T . CT . A . . AT T . .
blockSeqs : . . C C CACTT C . . . . . A C . AGT . . C . A T C TG . AAAA . . T TA T A . . . . . . C . AC A T . . . A . T . A . G . . . T G . A CAAT T C A T C T T A . G . T A A . A . TA . A . . A G . .
blockSeqs : . . C C CATTT C . . . . . G C . ACA . . T . A A T T . AA . . C . . . . . . . G A . . . A . T . G . A . . . C A . A AGG T . . . . T G G . . . T T . . . . G . T . . . G . .
blockSeqs : . . C C CATTT C . . . . . G C . A . . A . G . . . . . . . . T . G . . . . . . . C . . C AC . . . A . . . .
blockSeqs : . . A C CATTA T . . . . . T C . C . . C . . . . T . . .
blockSeqs : . . C C CATTT C . . . . . T C . . . . . . .
blockSeqs : . . C G CATTT T . . . . . T .
blockSeqs : . . C T CATG C . . . . . . .
blockSeqs : . . T . A . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . .
blockSeqCons : CATTT**********
originalCons : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------CATA-TTTAACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTNGTGC-----AGCTACGCTNNA---A----AAAGCAAT-GATATNTCGTTNAGTAAGTCAAANTTTA-AAAAA-AACAA-CCAAGTTACTTTTCTACCT-------------TGTCAGAACAT-T-CTGATGACGGCCATTTTG-------AAATATAACGGGATCTCGCGAGAATGGAATG--AGACTTCCGATTTCCATATTT--GG-TTTGTTTACTATGATTGTTGTTTACGAATGAAAATCTGACGTATGGCGGGAAACACACAC--AATTCG-CATTNTATTTATTAAACCAGTTGGTAGGACGCCCAAAGCATCNTTTCCGTCACATATGAGGCTTATAATGTTCTTCTGTTCTTT--AAGCTGGATTCCGAAGCATTGTTTCTCTAAAACTCTTTGTAAACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTNCCTTATATGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAATGTTAACGG-AG-----GT-ANA--TTTT---A--TTTNGAT-------TTACCG--CAA---CACAA--TA-AGNAGGTTTTTG--A---ANAACGGTTAAT-TAAACCCTCAAAAACGTTTTACCGATTATTTNAACGGCTACAGGTTAGAGANAAA-CGAT--ATATTGTN--GCAACCATNACGTTTTATAGCCGCTAAA-AATG----TCGAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCGTGACG-----AGA--GGGTATCGAGTCAAAGGT------AGTAATATTATTT
finalCons : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT-CATTCCCATTT----------AACGTTTCAATTCG-----A-TGTT-CAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTNGTGC-----AGCTACGCTNNA---A----AAAGCAAT-GATATNTCGTTNAGTAAGTCAAANTTTA-AAAAA-AACAA-CCAAGTTACTTTTCTACCT-------------TGTCAGAACAT-T-CTGATGACGGCCATTTTG-------AAATATAACGGGATCTCGCGAGAATGGAATG--AGACTTCCGATTTCCATATTT--GG-TTTGTTTACTATGATTGTTGTTTACGAATGAAAATCTGACGTATGGCGGGAAACACACAC--AATTCG-CATTNTATTTATTAAACCAGTTGGTAGGACGCCCAAAGCATCNTTTCCGTCACATATGAGGCTTATAATGTTCTTCTGTTCTTT--AAGCTGGATTCCGAAGCATTGTTTCTCTAAAACTCTTTGTAAACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTNCCTTATATGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAATGTTAACGG-AG-----GT-ANA--TTTT---A--TTTNGAT-------TTACCG--CAA---CACAA--TA-AGNAGGTTTTTG--A---ANAACGGTTAAT-TAAACCCTCAAAAACGTTTTACCGATTATTTNAACGGCTACAGGTTAGAGANAAA-CGAT--ATATTGTN--GCAACCATNACGTTTTATAGCCGCTAAA-AATG----TCGAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCGTGACG-----AGA--GGGTATCGAGTCAAAGGT------AGTAATATTATTT
Alignments
lowQualScore : 11111 22222222 111111 11111 11111111111 1 111111 3333333333333 1 2222222 11 11 1 1111 11 1 11 11 1111 22222 11 2222222 11 1111 111111 111111
lowQualScore : 8888888 444 2 8888888 7777 2 0 00000 2 2 33 555 3 1 4 44444444 55 55 1 555555 9999 9999 5 0 0 44 44444 0 55555555555 0 5 2 1 66 6 5 5 6 444444 1 1 6666666666666 0 8 8 1 6666666 1 4 3 33 0 33 0 2222 3 88 3 3 1 7 1 7 88 0 2 1 0 1 11 2222 3 77 0 777 6 3 5 44444 5 1 11 9999 66 0 2 3333333 999 888 11 5 1 0 777 888 1 5555 88 0 4 7 1 4 1 1 0 0 0 1 5 3 77 888 1 6 5 1 2222 77 5 4 4 4 11 888888 66 666666
lowQualScore : ....... ... . ....... .... . . ..... . . .. ... . . . ........ .. .. . ...... .... .... . . . .. ..... . ........... . . . . .. . . . . ...... . . ............. . . . . ....... . . . .. . .. . .... . .. . . . . . . .. . . . . . .. .... . .. . ... . . . ..... . . .. .... .. . . ....... ... ... .. . . . ... ... . .... .. . . . . . . . . . . . . . .. ... . . . . .... .. . . . . .. ...... .. ......
lowQualScore : 7777777 777 5 1111111 0000 5 6 00000 9 9 99 000 8 0 0 22222222 55 55 4 555555 4444 8888 2 9 1 00 33333 7 99999999999 4 7 4 0 66 6 4 7 7 000000 0 0 7777777777777 0 0 0 0 0000000 4 2 2 88 2 88 0 0000 7 33 7 3 0 3 0 3 33 7 5 0 8 4 00 2222 0 99 7 888 6 4 0 44444 0 0 99 0000 99 1 8 1111111 111 888 99 0 0 2 111 888 0 0000 66 2 5 6 6 3 3 0 4 7 7 0 7 0 99 999 0 6 7 7 1111 99 0 4 4 4 77 999999 11 444444
consensus : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------CAT---TT-AACGTTTCAATTCG-----A-TG-TTCAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTNGTGC-----AGCTACGCTNNA---A----AAAGCAAT-GATATNTCGTTNAGTAAGTCAAANTTTA-AAAAA-AACAA-CCAAGTTACTTTTCTACCT-------------TGTCAGAACAT-T-CTGATGACGGCCATTTTG-------AAATATAACGGGATCTCGCGAGAATGGAATG--AGACTTCCGATTTCCATATTT--GG-TTTGTTTACTATGATTGTTGTTTACGAATGAAAATCTGACGTATGGCGGGAAACACACAC--AATTCG-CATTNTATTTATTAAACCAGTTGGTAGGACGCCCAAAGCATCNTTTCCGTCACATATGAGGCTTATAATGTTCTTCTGTTCTTT--AAGCTGGATTCCGAAGCATTGTTTCTCTAAAACTCTTTGTAAACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTNCCTTATATGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAATGTTAACGG-AG-----GT-ANA--TTTT---A--TTTNGAT-------TTACCG--CAA---CACAA--TA-AGNAGGTTTTTG--A---ANAACGGTTAAT-TAAACCCTCAAAAACGTTTTACCGATTATTTNAACGGCTACAGGTTAGAGANAAA-CGAT--ATATTGTN--GCAACCATNACGTTTTATAGCCGCTAAA-AATG----TCGAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCGTGACG-----AGA--GGGTATCGAGTCAAAGGT------AGTAATATTATTT
Reference ( family-930 ) : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------CAT---TT-AACGTTTCAATTCG-----A-TG-TTCAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTNGTGC-----AGCTACGCTNNA---A----AAAGCAAT-GATATNTCGTTNAGTAAGTCAAANTTTA-AAAAA-AACAA-CCAAGTTACTTTTCTACCT-------------TGTCAGAACAT-T-CTGATGACGGCCATTTTG-------AAATATAACGGGATCTCGCGAGAATGGAATG--AGACTTCCGATTTCCATATTT--GG-TTTGTTTACTATGATTGTTGTTTACGAATGAAAATCTGACGTATGGCGGGAAACACACAC--AATTCG-CATTNTATTTATTAAACCAGTTGGTAGGACGCCCAAAGCATCNTTTCCGTCACATATGAGGCTTATAATGTTCTTCTGTTCTTT--AAGCTGGATTCCGAAGCATTGTTTCTCTAAAACTCTTTGTAAACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTNCCTTATATGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAATGTTAACGG-AG-----GT-ANA--TTTT---A--TTTNGAT-------TTACCG--CAA---CACAA--TA-AGNAGGTTTTTG--A---ANAACGGTTAAT-TAAACCCTCAAAAACGTTTTACCGATTATTTNAACGGCTACAGGTTAGAGANAAA-CGAT--ATATTGTN--GCAACCATNACGTTTTATAGCCGCTAAA-AATG----TCGAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCGTGACG-----AGA--GGGTATCGAGTCAAAGGT------AGTAATATTATTT
gi|1 : TAGTTTCAATACAGAAACAG-------ACAT---TCCCATTT-CATTCC-------CATAATTT-AACGTTTGAATTCG-----A-TG-TTCAT--ATTA---AGTAGAAGCAGGATTAAACT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTAGTAT-----AAATACACTTCA---A----AAAGTAAT-GATGTTTTGTTTAGTAAGTCAAACTTTATAAAAA-AACAA-CCAAATTATTTTTCTACCA-------------TGTCAAAACAT-T-CTGATGACGGCCATTTTA-------AAAAATAACAGGAACCTGCGAGAATGGAATA--ACACTTCCGATTTCAATAATT--TG-TTTGTTTACTATGATTGTTGTT-ACGAATGAAAATCTGACGTATGGCAGGATACACACAC--AATTCG-CATTTTATTTATTCAACCAGTTGGTAGGACGCCCAAAGCATCATTTCCGTCACATATGAGGCTTATAATCTTCTTCTGTTCTTC--AAGCTGGATTCCGAAGCATTGTTTCTCTGAAACTCTTTGTATACAGCGGTTGAAATTTAGGTCCGCCATTTTGTTATTGCTTTACTACGATTACCTTATTTGG--TAGACT-C--TTTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATCCGAATGCTAGCGA-AG-----GT-ACA--TTTT---A--TTTCGAT-------TTACCG--CAA---CACAA--TA-AGAAGGTTTTTG--A---ATAACTGTTAAT-TAAACCCTCAAAAACATTTTACAGATTATGTAAACAGCTACGGGTTAGAGATAAA-CAAT--ATATTGTA--GCAACCATAATGTTTTATAGCCGCTAAA-AATG----TCAAAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCCACACTGCTCCATTACAA-CCGTATGCATCGATTTACTACCGTGACA-----AGA--GGGTATGAAGTCAAAGGT------AGTAATATTATTT
gi|10 : AGTTTCAATACCGAAATTC-------AAAT---TCCCATTT-CATTCC-------CAC---TT-AACTTTTCAATTCG-----A-TG-TTCAT--ATTA---AGTAGAAGCA--ATCAAAGG-T--------AGTTAT--ATTA--TTTTTA------GA---TTT
gi|11 : --TTTAGGTCCATTTTCAAATTT--CA------AGT---CGAATGAAAACGG-AG-----GT-AAA--TTGA---A--T----AT-------TTACAA--AAAAAACAAAA--CA-AAAA----------A---AAAACAAATAAA-AAAAGTTT--AAAACACAAAACCAATTATTTCAACGACTACATGTTCGAGATAAATCGA-----GTTGTGCTGCAACCATCATGTTTGATgagggtgtacatatttgtacatggttacatacatgtgtgtaaaaattacatatttgatttatctaatatttcagtaaactt
gi|12 : atacaaAATACAGAAATGC-------CAAT---TCTAATTTTCATTTTAAAAAAACA-------AACGTTTAAATTTG-----A-TG-TTCAT--TTTA---AATAGGAGCATGACTTAAGT-TT-------CCTGAC--AATAAGTTTTAAT-----G-----TTC-----ACC------AACATATGTATTTTATGC-----AGCAACGCTAGA---A----ATAGAAAG-GA-ATCTTAT--GGTTATTCAAAATTTA-AAAAcaccaa
gi|13 : TCAATACAGAAA-------------T---TTCTATTT-CATTCT-------CAT---TT-AATGTTCTAATTTA-----A-TGTTTCATGAATTATAGAGTATGAGTAGGACTAAAAT-TT---CA--TGACAA--GCTG----TGAA------GATTGAGTAAT---ACCT
gi|14 : ATGTTTTATAGCCGCTAAA-A-TG----TCGGAGTACCTG-AAAACCTTGCGGA-AGTGAATAGCTTCAGCACTGCTTCATTACAA-CCATATGCATCGATTAACTACCGTAACG-----AGA--GGGTATCAAGTCATAGGT------AGTAATATTATTTtcaatgggatattgagtttagtgtcctttatgtgcttcattaaagccagtattg
gi|15 : aGTTTCAATGCAGAAGCGC-------ACAT---TCCCATTT-CATTCC-------CAT---TT-AACGTTTCAATTCG-----A-TG-TTCAT--ATTA---AGTAGGAGCAGGACTAAAAT-TT---AA--AGTCAC--GCTA--TTTTAA------GA---ATTCAT---ACCCATATATATATATc
gi|16 : -AAAACTTT-CAAAGAGTGAATAGCATCGGCAATGCTCCATTACAA-GGTTATGTATTGATTTAGAACCATGAAGGATGCAGA--GGGT
gi|17 : AGTA-CCGAATGTTAACGG-AA-----GT-ATACATTTT---A--TTTCGAT-------TTACCG--CAA---CACAA--TT-AGGAGGTTTTTA--A---ATAATGTTTTAT---AGCCGCTAAAAcaaactaagatggatttactatttc
gi|18 : AGTTTCAATACAGACACGC-------ACAT---TCCCATTT-CATTCC-------CAT---TT-At
gi|18 : ATTTACT-----GACT-----AGA--GGGTATCGAGTCAAAGGTACCTGAAGTAATATTATTTctgactagagggtatcgagtcaaaggtacctgaagtaatattattt
gi|19 : agtttcaatacagacacgcacattcccatttcattcccAGTTTCAATACAGAAACAC-------ACAT---TTCCATTT-CATTCC-------CA----TG-GATGTAGCAAGTCGT----ATTG-TTTAT--ACTA---A
gi|2 : GTTTCAATACAGAATAGC-------ACAT---TCCCATT----------------A-------AACGTTTCAATTCG-----A-TG-TTCAT--ATTA---AGTAGAAGCAGAACTAAAAT-TT---AG--AGTCAC--ACTA--TTTCAA------GA---ATTCAT---ACCTATATAAATAAATATCCTTAGTAT-----AAATATACTTTACAAATTTTAAAGTAAT-ATTATATTGTTTAGTAAGTCAAACTTTA-AAAAA-AACTA-CCAAGTTACTTTTCTACCT-------------TGTCAAAACAT-T-CTGATGACAGTCATTTTG-------AAATATAACAGGATCTCGTGAGAATGGAACG--AGATTTCCGGTTTTCATATTTCCGG-TTTGTTTACTGTGATTGTTGTTTACGAATGAAAATTTGACGTATGGTGAGAAACACAAACGGAATGAGACATTCCA------AAAACAGTTGGTAAGACGCCCAAAGCATCCGTTCCGTCACATATGAGGCTTTTAATGTTCTTCTGTTCTTTTTAAGCTGGATTCCGAAGCAATATTTCTCTAAAACTCTTTGTAAACACTGGTTGAAATTAAGGTCCGCCATTGTGTTTTTATTTTACTACGATTTCCTTATTTGG--TAAACT-C--TTAAGCGCCGCCCAAAAATTT--TAGCCGAAAGTATCCGAATGTTAACGGTAGT----AT-ACA--TTTT---A--TTTGGAT-------TTACCG--CAA---CACAA--TA-TGT-GTTTTTTT--A---ATAACGGTTAAT-TAAACCCTCAAAAACGTTTGACAGATTATGTAAACAGCTACAGGTTAGAGAAAAA-CGAT--ATACTGTA--GCAAACATAATGTTTTATAGCCGTTTAA-AATG----TCAAAGTACCTGAAAAATCTTGCAGA-AGTGAATAGCTGCCACACTGCTCCATTACAA-CCATGTGCATCGATTTACTACCGTGACG-----AGA--GGCTATCGAGTCAAAAGT------AGTTATATCATTTactaaaggtagtaatat
gi|20 : TAGTTTCAGTACAGAAATGCCAGATTCAAATAAATCCCATTT-CATTCC-------CAT---TA-AACGTTTCAAT--G-----G-TA-TTTGT--AATA---
gi|21 : CCTTGCAGA-TGAGAATAGCCTCCGAGCTGCTCC--------------------ATTTACTATGGAGAC------AGA--AGA-ACGGAGGCAATGGT------AATAATATTATTTcaaaat
gi|22 : GTTTCGATACAGAAACGC-------ACAT---AACTATTA-AATTCC-------CAT---TTAAACATTTTAATTCA-----A-TG-TTCCT--GTT------TAGGAGCAAGACTc
gi|23 : TTCAATACAGAAATGC-------ACAT---T------------CC-------CAT---TT-AACAATTCAATTTG-----A-TG-TTCAT--ATTA---AGTAGGAGCAGGACT
gi|24 : TGGTTTCAATACAGAAACTC-------ACAT---TCCTATTT-CATTCC-------AAT---TT-AAC
gi|25 : GTTTCTA-ACAGAAACGC-------ACAT---TCCCATTT-CATTCC-------CAT---TT-AACATagatggcagtaa
gi|26 : -----AGA--GGGTATCGAGTTAAAGGT------AGTAATATTATTTgaccaga
gi|3 : TAGTTTCAATACAGAAACGC-------ACAT---TCCCATTT-----------------------AACATTTTAATTCG-----A-TG-TTCAT--ATTT---AATAGGAGCAGGACTAAAAT-TT---AG--TGTCGC--GCTA--TTTTAA------GA---ATTCAT---ACCTATATAAATATATATATTTAGTGT-----AAATACGCTTCA---A----AAAGTAAT-GTTATATTGTTTAGTAAGTCAAA-TTTA-AAAAA-AAAAA-ACAAGTTTCTTTTCTACCT-------------TGTCAAAACAT-T-CTGATGATGGCCATTTTA-------AAAAATACTGGGGTCTCGCGAGAATGGAATG--AGACATCCGATTTCCATATTT--GG-TTTGTTTACTAGGATTGTT---TACGAATGAAAATCTGACATATGGCTGGAAACACACAC--AACTTG-CATAATATTTATTAAACCAGTAGGTAGGACGCCCAAAGCATCTTTTCTGTCACATATGAGGCTAAAAATGT--TTTTGTTCTTT--AAACTGGATTCGGAAGCATTGTTTCTCTAAAACTCTTTGCAAACAGTGGTTGAAATTTAGGTCCGCCATTTTGTTTTTGCTTTACTACGATTGCTTTATATGG--TAGACT-C--TGTAGCTCCGCCCACAAATTT--TAGCCGAAAGTATACAAATTTTTATGA-AACT---AT-ACA--TTTT---A--TTTTGAT-------TTACCG--CAA---CACAA--TA-AGGAGATTTTTG--A---ATAACAGTTAAT-TAAACCCTCAAAAATCTTTTACAGATTATGTAAACAGCTCAAGGTTAGAGCTAAA-CGAT--ATATTGTA--GCAACAACCATGTTTTATAGCCGCTAAA-AATG----TCAAAGTACCTG-AAAACCTTGCAGA-AGTGAATAGCTTCCGCACTGCTCCATTACAA-CCATATGCATCGATTTACTACCATGACG-----AGA--GGGTATCGAGTCAAAGGT------TATAATATTATTT
gi|4 : tATTACTTTATATAG--AATACA-G--TTTAGCTCCGCCAATAA-TTTGCTAGTCGAAAGTATTTTAATGT--A-GA-AGTACTTGT-AAA--TGCT---AATCTTGAATAGAATAGTTACCAAATAA---CACAG--CATAGTAGGTGTTTG--ATAGAAAAAGG--AGT-TACGCACTCAAACATTGTTTGCCGCTCATTGCATTCATCAAAGATTAGA-AGTAA-C-AT--TTATTTTT--GCAACCATTACGTTTTATGTCCGGTAAATAACA----TTG---------------CTCGCT----CTGGATAACGTCCACGCTG--CAACTACAAGGCA-ATACATCGGCTAACAACCGCCACAT----AGATGGGGTATC
gi|5 : CCATTTT---TTCACCTTACTGCGATTTCCT-ATATAGACTAGAATACGATTTAGCTCTGCTCACAAATT------CTGAGG------GAATGTAAATGG-AA-----GT-GAA--TTTGAAAA--TGGAAAT-------TTA-CA--CAA----ACAAATTA-A-CATGTATTTA--A---AAAACAATGAATAAAAACACTCAGAAACATTTTATCAATTATTTTAAAGACTACAGGGTGGACAAAAA-TCAT--ATTTTCTT--GCAACCATAACTTCTGATAGCCGATACA-TTTT----CTCTATTAACTG-AAAACCTTGCAGA-AATAAATAGCTTCCATACTTCTCAACTGAAA-C
gi|6 : aGTTTCAACTTGTCGTCA-TG-TTTAT--ATTT---AGTAAGAGCATGGCTAAAAT-TTCGTGACTAGTC-----TTA--TTAAAAAAGCTTGA---ATGCATCTAACC-ATATGC-CATCTGTATTTT-TACTTTTTAGCTGCACTCAA---G----AAAACAAT-GAAATTTCATGAAGTAAGTCAAAGTT---AAAAA-ATCAA----------TTTCCTACCA-------------TGTTAGAA-ATAT-CTTTTGAGAGCCATTTTGAAATATAAAATATAACTGGATATTCCAAGAA--AAATGTTGAACTTCAAATTTCCATATTT--GGCTTTATT
gi|7 : taagtgtgagtCCA-AAATTT--GCGATGAGTGTATGTGAATATGAAAGG-AA-----GTTATAA-TTTG---A--TTTGAATAG-----TTACC---CAA---AACAAA-TT-AGCAGGTTTTTGCAA---ACAA--ACTGAT-TATACTCT---------------GATTATTTGGATGACTAAATGTTGGAGAGAAA-TGATAAATATCATT--GCAACCATTACATTTGATAGACG--ACA-AATGTTCATCTAAATGTTGG-AATACTTTGCTGT-AGTGACTAGTTTCCACACTGTTGTATTATAA-
gi|8 : tT-CATTGC-------CAT---TT-AGTGTTT------G-----A-TT-TTGAT--ATTA---AGTAGAAGCATGA-TAAAATATT--------GTGACAAGCTA--TTTCAA------AA---GGTTAA---ATGCGTACAAA---ACACATTTTCTAC-----AGCTACGTTAAA---A----AAGGCAAT-GAAATTTCATCAAATAAGTCAAAACTAA-ATGAA-GATAAACCTATTTACTTTT-TACCTATCAGATAGTATCTGTCAGAA-AT-TATTGCTGACAGGCATTTTG-------AGATa
gi|9 : C-------AAAT---TCCCATTT-TATCTC-------TAT---AT-ATGGTGTCTATCCG-----A-TG-CCCTT--ATTA---AGCAGGAG-ATGA-----AT-TT---AC--A---AC--GC-G--T-----------GA------CA----ACCTATTTAAATAT--------TGTGC-----AGCTACGCT--A---A----AAAGCAATTGA-ATCCCATTAAGTAAGTCAAATTTAA-AAAAAGAATGA-CTTA-TTAATTTTTTACCT-------------TGTAAGAA