lowQualScore : 3 22222 11111 11 11111 333333333333333 1 77777777777 1
lowQualScore : 11 0 55 0 22 5 3 1 44 1 11111 44 555 99999 4 4 4 4 55 4 11111 11 999999999999999 0 6 5 33333333333 1 7 5 3 5
lowQualScore : .. . .. . .. . . . .. . ..... .. ... ..... . . . . .. . ..... .. ............... . . . ........... . . . . .
lowQualScore : 11 1 99 9 77 5 3 6 66 8 88888 66 777 99999 0 0 0 0 66 0 11111 88 000000000000000 1 7 1 77777777777 8 8 2 0 0
consensus : NNAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTT-GTCGACGAG-GAATAAATATT--TCTAACAAG-TG-A--TTTGCGTTGGTCTCGACCTAC-TTACA-CC-T-TCA-AC-TTGTGAC-----ACGTCCTCTC-----C-AAT---TGTTGTTTTCATAACAGTTTGA-C-AAACTCA-AGCACCAAAGCGCCGACTAATTGAC
Reference ( gi|1 ) : TGAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTTCGTTGACAAG-GAATAAATATT--TCTAACAAG-TG-A--TTTGCATTGGTCGCAAACTAT-TTACA-CC-T-TCT-AC-TTGTGAC-----ATGTCCTCTC-----C-AAT---TGTTGTTTTCTTAATAGTTTGA-CAAAACTCATAACATCAAAGCACCAACTCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gi|2 : AAAAAATAGCCTATTGGGCTATTTTGTTTTT-ATTTCATTTT-ATTGACGAA-GAAAAAATATT--TCTAATGAG-TATA--TTTGCGTTAGTCATGACCTAC-TTACA-CC-T-TCA-AC-TTGTGAG-----ACATCCACTC-----C-AGT---TGTTGTTTTCATAACAGCTTTA-------TCA-AACACCAAAGCACAGACTAATTGAC
gi|16 : AAAAAGTAGCCTATTAAGCTTTTGTTTTTTT-ATTTCTTTTT-GCCGACGAG-GAATAAATATT--TGTAATGAG-TG-A--AT----TTGGTCTTGACCTAC-TTACA-CC-T-TCA-AC-TTGTGAC-----Annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|3 : ttAAAAGTAGCCTGTTGGGTTATTGTGTTTTT-ATTGCTTTGT-GTCGATGAG-GAATTAATATT--TCTAACGAG-TGAA--TGTGGGTTGGTCTCAACCTAC-TTACA-CC-T-TCA-AA-TTGTGAC-----ACGTCGTCT--------AA------TTGTTTTCATAACAGTTTGA-------TCA-AGCACCAAAGCTCCGAC
gi|8 : tAAAAGTAGCCTATCAGGCTATTGTGTTAAT-ATTTCTTTTT-GTCGACGAG-GAATAAATATT--TCTAACAAG-TGAA--TTTCCGTTGGTTTCGACCTAC-TTTCAGCC-G-ACT-AA-TTGgcctcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|18 : AAAAGTAGCCTATTTGGCTATTGTGTTTTTTATTTTTTTTTGGTTGACGAG-GAATAAATATT--TCAAACAAG-TGAA--TTTGGGTTGGTCgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
gi|5 : tttAAAAGTAATCTATTAGGTTACTGTGTTTTT-ATTCCTTTTT-GTC----AT-GAATAAATATTAATATAATAA--TA-A--T---AATAAGT-G-AATTTGTGTTAGA-CC-T-TCA-AT-TTGTGAC-----ATGTTTTCTCCAAATC-AAT---TGTTGTTTTCttga
gi|4 : AAAGTAGTCTATTAGGCTTTTATGTTTT--ATTTCTTTTT-GTCGACAAG-GAATAAATATG--TATAACAAA-TGAA--TTTGCGTTGGTCTCGGCCTTT-TTACA-CC-T-TCA-AT-TAGTGAC-----ACGTCCTCT------C-A----------------TAACAATTTGA-------TCA-AACACCAAAGAGCCGCCTAATTGACaccaaagagttgactaattgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|10 : AAAGTAGCCTATTAGACTATTGTGCTTTT-ATTTCTTTTT-GTTGATGAG-GAATAGATATT--TCTAACAAG-AA-AATTTTGCactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : AAGAAACCTATGAG-----CGTGTTTT--ATTTTTTTTT-GTCTACGAGAGAAT---TATT--T---ACA----G-C--CTT----TGGCAGTAAGC-AT-T------C-TGTAA-AC-TTGTGAC-----ATGTCCTCTC-----C-AATCAATGTTATTTTCATAACAGTTTgactaattgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|6 : AATAGCCTATCA--CTAAT---TTTTA-ATTTCTATC-CATCTATGAG-GAATTAGTATA--ACTTGTATT-TGTA--TTTGCATTGGTCTCTGCCTAT-TTACA-CT-T-TCTCAC-AACTAACACTCAACTTCCTCTC-----C-AA----AGTTGTTTTCATAATTGCCTAATCTAAACT---------GAAGCGACGACTAATTGACt
gi|9 : GTAGGCTATTA-----TTGTGTTTTT-AATTCTCTCT-GTCTATGAA-GATTTAGTATT--TTTAAAAAGTTA-A--TCTGCGCTGGTTTCAACTCAT-TTACA-CCTT-TCG-ACAATA-GAC-----AT-TCACCTTGTGA-C-AA----TGTCACTTTCATA--AGTTTAA-CCAAAacctctccccaggataaacatttatgtgaagcgtgttttctatggcatgtgtctgtattgt
gi|17 : TTTTTGTCGACGAG-GAATAAATATT--TCTAACAA-----A--TTTGCGTTGG-CTTGACCTAC-TTACA-CC-T-TCA-AC-TTGTGAC-----ACGTCCTTTC-----CAAAT---CG--GTTTTCATAACAGTTTGaagctgactaattgacatct
gi|12 : GTTTGATCAAAACTGGTAGCACCAAAGTGCCAACTAATTG
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TACCATTTTTATACCACCAAAGCGCCGACTAATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTATTATATAACGTATTTAGCGCGTAACGCGTTTTAGCATTAAGTAATAGAAATACTCAAATTCAAAGATCGCACTAAAACA
Unaligned ( gi|13 ): TTTCACAACAGTTAGATCAAACACCAACATGCCGACTAATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|14 ): CACCAAAGTGCCGACCTATTGACACCTTTCCCCACTAAATGTTAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|15 ): GAAACACCAAAGCACTGTCTAATTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|19 ): TAATTAAAACGCGTTTTGTAACAGAAATACTCGAATTCAAAGATCGCTCTAAAAC
Unaligned ( gi|20 ): TAATTAAAACGTGTTATATAATAGAAATCCTCAAATTCAAAGGTCACACTAAAA
Unaligned ( gi|21 ): ATTAAAACGCGTTGTGTAATAGAAATATTCAAATTCAAAGGTCGCACTCAAA
Alignments
lowQualScore : 1111111111 1111 1111 11111 2222222222 77777777777777
lowQualScore : 44 3 3 3 0 3333333333 3 3 8888 8888 0 00000 0 99999 4 9999999999 1 33333333333333 1
lowQualScore : .. . . . . .......... . . .... .... . ..... . ..... . .......... . .............. .
lowQualScore : 77 1 1 1 8 5555555555 3 3 9999 9999 7 00000 1 66666 4 8888888888 6 88888888888888 2
consensus : NNAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT----------TC-TAACAAG-TG-A--TTTGCGTTGGTCTCGACCTACTTACACCTT----CAACTTGTGAC-----ACGTCCTCTC----C-AA-----T---TGTTGTTTTCATAACAGTTTGA-------TCA-AACACCAAAGCGCCGACTAATTGAC
Reference ( family-915 ) : NNAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT----------TC-TAACAAG-TG-A--TTTGCGTTGGTCTCGACCTACTTACACCTT----CAACTTGTGAC-----ACGTCCTCTC----C-AA-----T---TGTTGTTTTCATAACAGTTTGAC--AAACTCA-AGCACCAAAGCGCCGACTAATTGAC
gi|1 : AAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTTCG-TTGACAAG-GAATAAATATT----------TC-TAACAAG-TG-A--TTTGCATTGGTCGCAAACTATTTACACCTT----CTACTTGTGAC-----ATGTCCTCTC----C-AA-----T---TGTTGTTTTCTTAATAGTTTGACA-AAACTCATAACATCAAAGCACCAACTCATTGAC
gi|10 : tgAAAGTAGCCTATTAGACTATTGTGCTTTT-ATTTCTTTTT-G-TTGATGAG-GAATAGATATT----------TC-TAACAAG-AA-AATTTTGCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : AAGAAACCTATGAG-----CGTGTTTT--ATTTTTTTTT-G-TCTACGAGAGAAT---TATT----------Tactaattgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : AACTTGTGAC-----ATGTCCTCTC----C-AA-----TCAATGTTATTTTCATAACAGTTTacagcctttggcagtaagcattctgtaaacttgtgacatgtcctctccaatcaatgttattttcataacagtttt
gi|12 : aagaaacctatgagcgtgttttatttttttttgtctacgagagaattatttacagcctttggcagtaagcattctgtaGTTTGATCAAAACTGGTAGCACCAAAGTGCCAACTAATTGt
gi|13 : ttTTTCACAACAGTTAGA-------TCA-AACACCAACATGCCGACTAATTGACtcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|14 : CACCAAAGTGCCGACCTATTGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|16 : AAAAAGTAGCCTATTAAGCTTTTGTTTTTTT-ATTTCTTTTT-G-CCGACGAG-GAATAAATATT----------TG-TAATGAG-TG-A--AT----TTGGTCTTGACCTACTTACACCTT----CAACTTGTGAC-----Aacctttccccactaaatgttagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : ttTTTTT-G-TCGACGAG-GAATAAATATT----------TC-TAACAA-----A--TTTGCGTTGG-CTTGACCTACTTACACCTT----CAACTTGTGAC-----ACGTCCTTTC----CAAA-----T---CG--GTTTTCATAACAGTTTG
gi|18 : AAAAGTAGCCTATTTGGCTATTGTGTTTTTTATTTTTTTTT-GGTTGACGAG-GAATAAATATT----------TC-AAACAAG-TGAA--TTTGGGTTGGTCTTGA
gi|2 : tttAAAAAATAGCCTATTGGGCTATTTTGTTTTT-ATTTCATTTT-A-TTGACGAA-GAAAAAATATT----------TC-TAATGAG-TATA--TTTGCGTTAGTCATGACCTACTTACACCTT----CAACTTGTGAG-----ACATCCACTC----C-AG-----T---TGTTGTTTTCATAACAGCTTTA-------TCA-AACACCAAAGCACAGACTAATTGAC
gi|3 : AAAAGTAGCCTGTTGGGTTATTGTGTTTTT-ATTGCTTTGT-G-TCGATGAG-GAATTAATATT----------TC-TAACGAG-TGAA--TGTGGGTTGGTCTCAACCTACTTACACCTT----CAAATTGTGAC-----ACGTCGTCT-------AA-----------TTGTTTTCATAACAGTTTGA-------TCA-AGCACCAAAGCTCCGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : tAAAGTAGTCTATTAGGCTTTTATGTTTT--ATTTCTTTTT-G-TCGACAAG-GAATAAATATG----------TA-TAACAAA-TG-AA-TTTGCGTTGGTCTCGGCCTTTTTACACCTT----CAATTAGTGAC-----ACGTCCTC---------------------------TCATAACAATTTGA-------TCA-AACACCAAAGAGCCGCCTAATTGACgcctcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : AAAAGTAATCTATTAGGTTACTGTGTTTTT-ATTCCTTTTT-G-TC----AT-GAATAAATATTAATATAATAATAATAATAAG-TG-AA-TTTGTGTTAG---------------ACCTT----CAATTTGTGAC-----ATGTTTTCTC----C-AAATCAAT---TGTTGTTTTCA--------------------------CCAAAGAGTTGACTAATTGACactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|6 : AATAGCCTATCA--CTAAT---TTTTA-ATTTCTATCC-A-TCTATGAG-GAATTAGTATA----------AC-TTGTATT-TGTA--TTTGCATTGGTCTCTGCCTATTTACACTTTCTCACAAC---TAACACTCAACTTCCTCTC----C-AA---------AGTTGTTTTCATAA----TTGCC--TAATCTA-A--ACTGAAGCGACGACTAATTGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|7 : CACCAAAGCGCCGACTAATTGACacctctccccaggataaacatttatgtgaagcgtgttttctatggcatgtgtctgtattgt
gi|8 : taccatttttatacAAAAGTAGCCTATCAGGCTATTGTGTTAAT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT----------TC-TAACAAG-TGAA--TTTCCGTTGGTTTCGACCTACTTTCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtattatataacgtatttagcgcgtaacgcgttttagcattaagtaatagaaatactcaaattcaaagatcgcactaaaaca
gi|9 : GTAGGCTATTA-----TTGTGTTTTT-AATTCTCTCT-G-TCTATGAA-GATTTAGTATT----------TT-TAAAAAGTTA-A--TCTGCGCTGGTTTCAACTCATTTACACCTTTCGACAA--TA-GAC-----AT-TCACCTTGTGAC-AA---------TGTCACTTTCATA--AGTTTA---------------ACCAAAAAGCTGACTAATTGACgccgactaattggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAAACACCAAAGCACTGTCTAATTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|19 ): TAATTAAAACGCGTTTTGTAACAGAAATACTCGAATTCAAAGATCGCTCTAAAAC
Unaligned ( gi|20 ): TAATTAAAACGTGTTATATAATAGAAATCCTCAAATTCAAAGGTCACACTAAAA
Unaligned ( gi|21 ): ATTAAAACGCGTTGTGTAATAGAAATATTCAAATTCAAAGGTCGCACTCAAA
Alignments
lowQualScore : 111111111 2 1111 11111 222222222222222 111111 11111111
lowQualScore : 44 3 3 3 0 44 222222222 3 0 77 8888 0 00000 0 888888888888888 111111 4 33333333 1
lowQualScore : .. . . . . .. ......... . . .. .... . ..... . ............... ...... . ........ .
lowQualScore : 77 1 1 1 8 22 333333333 3 0 99 9999 7 00000 1 333333333333333 555555 0 22222222 2
consensus : NNAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAAG-TG-A--TTTGCGTTGGTCTCGACCTACTTACACCTT----CAACTTGTGAC-----ACGTCCTCTC-----C-AAT---TGTTGTTTTCATAACAGTTTGA------TCA-AA--------CACCAAAGCGCCGACTAATTGAC
Reference ( family-915 ) : NNAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAAG-TG-A--TTTGCGTTGGTCTCGACCTACTTACACCTT----CAACTTGTGAC-----ACGTCCTCTC-----C-AAT---TGTTGTTTTCATAACAGTTTGA------TCA-AA--------CACCAAAGCGCCGACTAATTGAC
gi|1 : AAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTTCG-TTGACAAG-GAATAAATATT--T---------CTAACAAG-TG-A--TTTGCATTGGTCGCAAACTATTTACACCTT----CTACTTGTGAC-----ATGTCCTCTC-----C-AAT---TGTTGTTTTCTTAATAGTTTGACAAAACTCATAA--------CATCAAAGCACCAACTCATTGAC
gi|10 : tgAAAGTAGCCTATTAGACTATTGTGCTTTT-ATTTCTTTTT-G-TTGATGAG-GAATAGATATT--T---------CTAACAAG-AA-AATTTTGCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : AAGAAACCTATGAG-----CGTGTTTT--ATTTTTTTTT-G-TCTACGAGAGAAT---TATT--T---------actaattgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : AACTTGTGAC-----ATGTCCTCTC-----C-AATCAATGTTATTTTCATAACAGTTTacagcctttggcagtaagcattctgtaaacttgtgacatgtcctctccaatcaatgttattttcataacagtttt
gi|12 : aagaaacctatgagcgtgttttatttttttttgtctacgagagaattatttacagcctttggcagtaagcattctgtaGTTTGA------TCA-AAACTGGTAGCACCAAAGTGCCAACTAATTGt
gi|13 : ttTTTCACAACAGTTAGA------TCA-AA--------CACCAACATGCCGACTAATTGACtcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|14 : --------CACCAAAGTGCCGACCTATTGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|16 : AAAAAGTAGCCTATTAAGCTTTTGTTTTTTT-ATTTCTTTTT-G-CCGACGAG-GAATAAATATT--T---------GTAATGAG-TG-A--AT----TTGGTCTTGACCTACTTACACCTT----CAACTTGTGAC-----Aacctttccccactaaatgttagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : ttTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAA-----A--TTTGCGTTGG-CTTGACCTACTTACACCTT----CAACTTGTGAC-----ACGTCCTTTC-----CAAAT---CG--GTTTTCATAACAGTTTG
gi|18 : AAAAGTAGCCTATTTGGCTATTGTGTTTTTTATTTTTTTTT-GGTTGACGAG-GAATAAATATT--T---------CAAACAAG-TGAA--TTTGGGTTGGTCTTGA
gi|2 : tttAAAAAATAGCCTATTGGGCTATTTTGTTTTT-ATTTCATTTT-A-TTGACGAA-GAAAAAATATT--T---------CTAATGAG-TATA--TTTGCGTTAGTCATGACCTACTTACACCTT----CAACTTGTGAG-----ACATCCACTC-----C-AGT---TGTTGTTTTCATAACAGCTTTA------TCA-AA--------CACCAAAGCACAGACTAATTGAC
gi|3 : AAAAGTAGCCTGTTGGGTTATTGTGTTTTT-ATTGCTTTGT-G-TCGATGAG-GAATTAATATT--T---------CTAACGAG-TGAA--TGTGGGTTGGTCTCAACCTACTTACACCTT----CAAATTGTGAC-----ACGTCGTCT--------AA------TTGTTTTCATAACAGTTTGA------TCA-AG--------CACCAAAGCTCCGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : tAAAGTAGTCTATTAGGCTTTTATGTTTT--ATTTCTTTTT-G-TCGACAAG-GAATAAATATG--T---------ATAACAAA-TG-AA-TTTGCGTTGGTCTCGGCCTTTTTACACCTT----CAATTAGTGAC-----ACGTCCTC-----------------------TCATAACAATTTGA------TCA-AA--------CACCAAAGAGCCGCCTAATTGACgcctcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : AAAAGTAATCTATTAGGTTACTGTGTTTTT-ATTCCTTTTT-G-TC----AT-GAATAAATATTAATATAATAATAATAATAAG-TGAA--TTTGTGTTAG---------------ACCTT----CAATTTGTGAC-----ATGTTTTCTCCAAATC-AAT---TGTTGTTTT---------------------------------CACCAAAGAGTTGACTAATTGACactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|6 : AATAGCCTATCA--CTAAT---TTTTA-ATTTCTATCC-A-TCTATGAG-GAATTAGTATA--A---------CTTGTATT-TGTA--TTTGCATTGGTCTCTGCCTATTTACACTTTCTCACAAC---TAACACTCAACTTCCTCTC-----C-AA----AGTTGTTTTCATAATTGCCTAA------TCT-AA---------ACTGAAGCGACGACTAATTGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|7 : TACCATTTTTA------T---AC--------CACCAAAGCGCCGACTAATTGACacctctccccaggataaacatttatgtgaagcgtgttttctatggcatgtgtctgtattgt
gi|8 : AAAAGTAGCCTATCAGGCTATTGTGTTAAT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAAG-TGAA--TTTCCGTTGGTTTCGACCTACTTTCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtattatataacgtatttagcgcgtaacgcgttttagcattaagtaatagaaatactcaaattcaaagatcgcactaaaaca
gi|9 : GTAGGCTATTA-----TTGTGTTTTT-AATTCTCTCT-G-TCTATGAA-GATTTAGTATT--T---------TTAAAAAGTTA-A--TCTGCGCTGGTTTCAACTCATTTACACCTTTCGACAA--TA-GAC-----AT-TCACCTTGTGA-C-AA----TGTCACTTTCATA--AGTTTAA------CCA-AA------------AA---GCTGACTAATTGACgccgactaattggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAAACACCAAAGCACTGTCTAATTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|19 ): TAATTAAAACGCGTTTTGTAACAGAAATACTCGAATTCAAAGATCGCTCTAAAAC
Unaligned ( gi|20 ): TAATTAAAACGTGTTATATAATAGAAATCCTCAAATTCAAAGGTCACACTAAAA
Unaligned ( gi|21 ): ATTAAAACGCGTTGTGTAATAGAAATATTCAAATTCAAAGGTCGCACTCAAA
Alignments
lowQualScore : 111111111 2 1111 11111 222222222222222 111111 11111111
lowQualScore : 44 3 3 3 0 44 222222222 3 0 77 8888 0 00000 0 888888888888888 111111 4 33333333 1
lowQualScore : .. . . . . .. ......... . . .. .... . ..... . ............... ...... . ........ .
lowQualScore : 77 1 1 1 8 22 333333333 3 0 99 9999 7 00000 1 333333333333333 555555 0 22222222 2
consensus : NNAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAAG-TG-A--TTTGCGTTGGTCTCGACCTACTTACACCTT----CAACTTGTGAC-----ACGTCCTCTC-----C-AAT---TGTTGTTTTCATAACAGTTTGA------TCA-AA--------CACCAAAGCGCCGACTAATTGAC
Reference ( family-915 ) : NNAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAAG-TG-A--TTTGCGTTGGTCTCGACCTACTTACACCTT----CAACTTGTGAC-----ACGTCCTCTC-----C-AAT---TGTTGTTTTCATAACAGTTTGA------TCA-AA--------CACCAAAGCGCCGACTAATTGAC
gi|1 : AAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTTCG-TTGACAAG-GAATAAATATT--T---------CTAACAAG-TG-A--TTTGCATTGGTCGCAAACTATTTACACCTT----CTACTTGTGAC-----ATGTCCTCTC-----C-AAT---TGTTGTTTTCTTAATAGTTTGACAAAACTCATAA--------CATCAAAGCACCAACTCATTGAC
gi|10 : tgAAAGTAGCCTATTAGACTATTGTGCTTTT-ATTTCTTTTT-G-TTGATGAG-GAATAGATATT--T---------CTAACAAG-AA-AATTTTGCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : AAGAAACCTATGAG-----CGTGTTTT--ATTTTTTTTT-G-TCTACGAGAGAAT---TATT--T---------actaattgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : AACTTGTGAC-----ATGTCCTCTC-----C-AATCAATGTTATTTTCATAACAGTTTacagcctttggcagtaagcattctgtaaacttgtgacatgtcctctccaatcaatgttattttcataacagtttt
gi|12 : aagaaacctatgagcgtgttttatttttttttgtctacgagagaattatttacagcctttggcagtaagcattctgtaGTTTGA------TCA-AAACTGGTAGCACCAAAGTGCCAACTAATTGt
gi|13 : ttTTTCACAACAGTTAGA------TCA-AA--------CACCAACATGCCGACTAATTGACtcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|14 : --------CACCAAAGTGCCGACCTATTGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|16 : AAAAAGTAGCCTATTAAGCTTTTGTTTTTTT-ATTTCTTTTT-G-CCGACGAG-GAATAAATATT--T---------GTAATGAG-TG-A--AT----TTGGTCTTGACCTACTTACACCTT----CAACTTGTGAC-----Aacctttccccactaaatgttagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : ttTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAA-----A--TTTGCGTTGG-CTTGACCTACTTACACCTT----CAACTTGTGAC-----ACGTCCTTTC-----CAAAT---CG--GTTTTCATAACAGTTTG
gi|18 : AAAAGTAGCCTATTTGGCTATTGTGTTTTTTATTTTTTTTT-GGTTGACGAG-GAATAAATATT--T---------CAAACAAG-TGAA--TTTGGGTTGGTCTTGA
gi|2 : tttAAAAAATAGCCTATTGGGCTATTTTGTTTTT-ATTTCATTTT-A-TTGACGAA-GAAAAAATATT--T---------CTAATGAG-TATA--TTTGCGTTAGTCATGACCTACTTACACCTT----CAACTTGTGAG-----ACATCCACTC-----C-AGT---TGTTGTTTTCATAACAGCTTTA------TCA-AA--------CACCAAAGCACAGACTAATTGAC
gi|3 : AAAAGTAGCCTGTTGGGTTATTGTGTTTTT-ATTGCTTTGT-G-TCGATGAG-GAATTAATATT--T---------CTAACGAG-TGAA--TGTGGGTTGGTCTCAACCTACTTACACCTT----CAAATTGTGAC-----ACGTCGTCT--------AA------TTGTTTTCATAACAGTTTGA------TCA-AG--------CACCAAAGCTCCGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : tAAAGTAGTCTATTAGGCTTTTATGTTTT--ATTTCTTTTT-G-TCGACAAG-GAATAAATATG--T---------ATAACAAA-TG-AA-TTTGCGTTGGTCTCGGCCTTTTTACACCTT----CAATTAGTGAC-----ACGTCCTC-----------------------TCATAACAATTTGA------TCA-AA--------CACCAAAGAGCCGCCTAATTGACgcctcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : AAAAGTAATCTATTAGGTTACTGTGTTTTT-ATTCCTTTTT-G-TC----AT-GAATAAATATTAATATAATAATAATAATAAG-TGAA--TTTGTGTTAG---------------ACCTT----CAATTTGTGAC-----ATGTTTTCTCCAAATC-AAT---TGTTGTTTT---------------------------------CACCAAAGAGTTGACTAATTGACactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|6 : AATAGCCTATCA--CTAAT---TTTTA-ATTTCTATCC-A-TCTATGAG-GAATTAGTATA--A---------CTTGTATT-TGTA--TTTGCATTGGTCTCTGCCTATTTACACTTTCTCACAAC---TAACACTCAACTTCCTCTC-----C-AA----AGTTGTTTTCATAATTGCCTAA------TCT-AA---------ACTGAAGCGACGACTAATTGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|7 : TACCATTTTTA------T---AC--------CACCAAAGCGCCGACTAATTGACacctctccccaggataaacatttatgtgaagcgtgttttctatggcatgtgtctgtattgt
gi|8 : AAAAGTAGCCTATCAGGCTATTGTGTTAAT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAAG-TGAA--TTTCCGTTGGTTTCGACCTACTTTCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtattatataacgtatttagcgcgtaacgcgttttagcattaagtaatagaaatactcaaattcaaagatcgcactaaaaca
gi|9 : GTAGGCTATTA-----TTGTGTTTTT-AATTCTCTCT-G-TCTATGAA-GATTTAGTATT--T---------TTAAAAAGTTA-A--TCTGCGCTGGTTTCAACTCATTTACACCTTTCGACAA--TA-GAC-----AT-TCACCTTGTGA-C-AA----TGTCACTTTCATA--AGTTTAA------CCA-AA------------AA---GCTGACTAATTGACgccgactaattggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
blockSeqs : TT . G A AA ATAATAATA T A AT CTCA ACTCA CCAAATCAATT . . ACTGGTAG T
blockSeqs : T . . . . . . T A TCGA . CCAATCAAT . . . T
blockSeqs : T . . . . . . A . . . TGTGACAAT . . . T
blockSeqs : T . . . . . . A . . . CCAAATC . . . C
blockSeqs : T . . . . . . T . . . CCAGTT . . . C
blockSeqs : T . . . . . . A . . . CCAAA . . . A
blockSeqs : A . . . . . . . . . . AA . . . A
blockSeqs : T . . . . . . . . . . . . . . C
blockSeqs : T . . . . . . . . . . . . C
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : CCAAAT********* ******
originalCons : NNAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAAG-TG-A--TTTGCGTTGGTCTCGACCTACTTACACCTT----CAACTTGTGAC-----ACGTCCTCTC-----C-AAT---TGTTGTTTTCATAACAGTTTGA------TCA-AA--------CACCAAAGCGCCGACTAATTGAC
finalCons : NNAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAAG-TG-A--TTTGCGTTGGTCTCGACCTACTTACACCTT----CAACTTGTGAC-----ACGTCCTCTCCAAAT---------GTTGTTTTCATAACAGTTTGA------TCA-AA--------CACCAAAGCGCCGACTAATTGAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAAACACCAAAGCACTGTCTAATTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|19 ): TAATTAAAACGCGTTTTGTAACAGAAATACTCGAATTCAAAGATCGCTCTAAAAC
Unaligned ( gi|20 ): TAATTAAAACGTGTTATATAATAGAAATCCTCAAATTCAAAGGTCACACTAAAA
Unaligned ( gi|21 ): ATTAAAACGCGTTGTGTAATAGAAATATTCAAATTCAAAGGTCGCACTCAAA
Alignments
lowQualScore : 111111111 2 1111 11111111111 11111 22222222 111111 11111111
lowQualScore : 44 3 3 3 0 44 222222222 3 0 77 8888 99999999999 00000 1 00000000 2 111111 4 33333333 1
lowQualScore : .. . . . . .. ......... . . .. .... ........... ..... . ........ . ...... . ........ .
lowQualScore : 77 1 1 1 8 22 333333333 3 0 99 9999 00000000000 00000 1 33333333 0 555555 0 22222222 2
consensus : NNAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAAG-TG-A--TTTGCGTTGGTCTCGACCTACTTACACCTT----CAA-----------CTTGTGAC-----ACGTCCTCTCCA---AAT--GTTGTTTTCATAACAGTTTGA------TCA-AA--------CACCAAAGCGCCGACTAATTGAC
Reference ( family-915 ) : NNAAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAAG-TG-A--TTTGCGTTGGTCTCGACCTACTTACACCTT----CAA-----------CTTGTGAC-----ACGTCCTCTCCA---AAT--GTTGTTTTCATAACAGTTTGA------TCA-AA--------CACCAAAGCGCCGACTAATTGAC
gi|1 : AAAAAGTAGCCTATTAGGCTATTGTGTTTTT-ATTTCTTTTTCG-TTGACAAG-GAATAAATATT--T---------CTAACAAG-TG-A--TTTGCATTGGTCGCAAACTATTTACACCTT----CTA-----------CTTGTGAC-----ATGTCCTCTCCA---ATT--GTTGTTTTCTTAATAGTTTGACAAAACTCATAA--------CATCAAAGCACCAACTCATTGAC
gi|10 : tgAAAGTAGCCTATTAGACTATTGTGCTTTT-ATTTCTTTTT-G-TTGATGAG-GAATAGATATT--T---------CTAACAAG-AA-AATTTTGCGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : AAGAAACCTATGAG-----CGTGTTTT--ATTTTTTTTT-G-TCTACGAGAGAAT---TATT--T---------actaattgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|11 : AA-----------CTTGTGAC-----ATGTCCTCTCCAATCAAT--GTTATTTTCATAACAGTTTacagcctttggcagtaagcattctgtaaacttgtgacatgtcctctccaatcaatgttattttcataacagtttt
gi|12 : aagaaacctatgagcgtgttttatttttttttgtctacgagagaattatttacagcctttggcagtaagcattctgtaGTTTGA------TCA-AAACTGGTAGCACCAAAGTGCCAACTAATTGt
gi|13 : ttTTTCACAACAGTTAGA------TCA-AA--------CACCAACATGCCGACTAATTGACtcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|14 : --------CACCAAAGTGCCGACCTATTGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|16 : AAAAAGTAGCCTATTAAGCTTTTGTTTTTTT-ATTTCTTTTT-G-CCGACGAG-GAATAAATATT--T---------GTAATGAG-TG-A--AT----TTGGTCTTGACCTACTTACACCTT----CAA-----------CTTGTGAC-----Aacctttccccactaaatgttagccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|17 : ttTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAA-----A--TTTGCGTTGG-CTTGACCTACTTACACCTT----CAA-----------CTTGTGAC-----ACGTCCTTTCCA---AATC-G--GTTTTCATAACAGTTTG
gi|18 : AAAAGTAGCCTATTTGGCTATTGTGTTTTTTATTTTTTTTT-GGTTGACGAG-GAATAAATATT--T---------CAAACAAG-TGAA--TTTGGGTTGGTCTTGA
gi|2 : tttAAAAAATAGCCTATTGGGCTATTTTGTTTTT-ATTTCATTTT-A-TTGACGAA-GAAAAAATATT--T---------CTAATGAG-TATA--TTTGCGTTAGTCATGACCTACTTACACCTT----CAA-----------CTTGTGAG-----ACATCCACTCCA---GTT--GTTGTTTTCATAACAGCTTTA------TCA-AA--------CACCAAAGCACAGACTAATTGAC
gi|3 : AAAAGTAGCCTGTTGGGTTATTGTGTTTTT-ATTGCTTTGT-G-TCGATGAG-GAATTAATATT--T---------CTAACGAG-TGAA--TGTGGGTTGGTCTCAACCTACTTACACCTT----CAA-----------ATTGTGAC-----ACGTCGTCT--A---A-----TTGTTTTCATAACAGTTTGA------TCA-AG--------CACCAAAGCTCCGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : tAAAGTAGTCTATTAGGCTTTTATGTTTT--ATTTCTTTTT-G-TCGACAAG-GAATAAATATG--T---------ATAACAAA-TG-AA-TTTGCGTTGGTCTCGGCCTTTTTACACCTT----CAA-----------TTAGTGAC-----ACGTCCTC-------------------TCATAACAATTTGA------TCA-AA--------CACCAAAGAGCCGCCTAATTGACgcctcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : AAAAGTAATCTATTAGGTTACTGTGTTTTT-ATTCCTTTTT-G-TC----AT-GAATAAATATTAATATAATAATAATAATAAG-TGAA--TTTGTGTTAG---------------ACCTT----CAA-----------TTTGTGAC-----ATGTTTTCTCCA---AATCAATTGTT---------GTTT--------T-------------CACCAAAGAGTTGACTAATTGACactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|6 : AATAGCCTATCA--CTAAT---TTTTA-ATTTCTATCC-A-TCTATGAG-GAATTAGTATA--A---------CTTGTATT-TGTA--TTTGCATTGGTCTCTGCCTATTTACACTTTCTCACAA-----------C---TAACACTCAACTTCCTCTCCA---AA---GTTGTTTTCATAATTGCCTAA------TCT-AA---------ACTGAAGCGACGACTAATTGACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|7 : TACCATTTTTA------T---AC--------CACCAAAGCGCCGACTAATTGACacctctccccaggataaacatttatgtgaagcgtgttttctatggcatgtgtctgtattgt
gi|8 : AAAAGTAGCCTATCAGGCTATTGTGTTAAT-ATTTCTTTTT-G-TCGACGAG-GAATAAATATT--T---------CTAACAAG-TGAA--TTTCCGTTGGTTTCGACCTACTTTCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtattatataacgtatttagcgcgtaacgcgttttagcattaagtaatagaaatactcaaattcaaagatcgcactaaaaca
gi|9 : GTAGGCTATTA-----TTGTGTTTTT-AATTCTCTCT-G-TCTATGAA-GATTTAGTATT--T---------TTAAAAAGTTA-A--TCTGCGCTGGTTTCAACTCATTTACACCTTTCGACAATAGACATTCACCTTGTGAC--------------------AAT--GTCACTTTCATA--AGTTTAA------CCA-AA------------AA---GCTGACTAATTGACgccgactaattggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnna
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GAAACACCAAAGCACTGTCTAATTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|19 ): TAATTAAAACGCGTTTTGTAACAGAAATACTCGAATTCAAAGATCGCTCTAAAAC
Unaligned ( gi|20 ): TAATTAAAACGTGTTATATAATAGAAATCCTCAAATTCAAAGGTCACACTAAAA
Unaligned ( gi|21 ): ATTAAAACGCGTTGTGTAATAGAAATATTCAAATTCAAAGGTCGCACTCAAA