lowQualScore : 111111111111111111111
lowQualScore : 1 1111 11111 333333333333333333333333 44444444444 1 333333333333333333333
lowQualScore : 0 1 6666 1 1 2 6 88 2 66 55 44444 0 2 888888888888888888888888 8 2 55555555555 5 999999999999999999999
lowQualScore : . . .... . . . . .. . .. .. ..... . . ........................ . . ........... . .....................
lowQualScore : 1 8 2222 9 9 0 2 88 2 22 66 00000 9 9 000000000000000000000000 8 0 88888888888 0 000000000000000000000
consensus : AAGGGACACACGGC-AATGTTGAAATC-GA-T-TT-T-ACTC-NTGT-TCACGCATC--AAA----TCAATCTTT-ACAC------A------GCAT-NACT--ATGAAGATAT-----TAAC--CCAAAGCAATTATGCTATCAGAAACT-TG-GTATT
Reference ( gi|5 ) : AAGGGACACACTGC-AATGTTGAAATC-AACT-TT-T-ATTC-CTGT-TCATGCATC--AAC----TCAGTCTTT-ACAC------A------GCAT-TATT--ATGAACACAT-----TA----CCAAAGGAA----GATATT--AAACTGTGAGTATTACT
gi|13 : AAGGGACACTTTAC-AAAGTTGAAGTC-A----TT-T-AGCC-TTGT-TCGTGCATCT-AACTTTATCAGTCTTT-ACAC------A------
gi|9 : aAAGGGACACACCAC-AGTGTTGAAATC-AA-T-TT-T-ACTC-ATTT-TCACGC-TCTAAAC----T-ATTTTTT-ACA
gi|19 : cAAGGGACACACGGC-AATGTTGACATC-AGCC-TT-G-ATTG-GTGT-TTATGCAtttatga
gi|4 : AAGGG-CATACCAC-AATGTTGAAATC-GGAT-TT-T-AATC-TTGT-TCACGCGTC--GAA----TCAATC---------------------G-A-----T--ATGAACATAT-----TAATATCCAAAaataaaccttcg
gi|18 : ttAAGGGACACACAGC-AACGTAGAAATC-CACC-TTGTAACTT-CTGT-TCACACATC--AAtatcactgtttgaaactcaatattttagaaaatactagc
gi|8 : ttaAAGGGACAAATGGC-AATGCAGAAATC-GA-T-TT-T-ACTG-ACGT-TCCCGCATC--AAA----TCAATACTT-ACAC------ataa
gi|17 : taAAGGAGCAC-TTGCCAATGTTGATATC-AA-T-TT-T-ATTC-ATGT-TCATTTTTC--AAC----TTActataaacgctg
gi|26 : ttaAAGGGACACACTGC-AATGTTGAAATTGAACC-TT-tcc
gi|11 : ttaAAGGGACACACAGC-AATGTTGAAATC-AAATGTT-T-Aacacatgtttaa
gi|14 : tttaAAGGGACACACGGC-ACTGCT--AATC--ACT-TT-T-AATC-ATTT-TCAC--------AC----TCAATCTTTGACAC------A-------CATATATaagggacacacagcaatgttaaaattaaatgt
gi|30 : ttaAAGGGACACACAGA-GATGTTGAAATC-AAAT-TT-T-
gi|29 : ttaAAGGGACACACAAC-AATGTTGAAATC-At
gi|23 : tttaAAGGACACATGAC-AATGTTGAAATC-AA------------------TTGTGCATC--AGG----TCAGTCTTT-ACCC------A------tagtgt
gi|25 : tatAGAGACACATGGC-AATGTTGAAATCTAA---TT-T-ACTA-CTGT-TTACTAATC--A
gi|12 : GGGACACATGGC-AATGATGTAATT-TGAT-TT-T-ACTC-CTGCCTCA--CATC--AAA----TCAGTCTTT-ACAC------A------
gi|16 : tatgACACAGAGC-AATTTTGAAATT-GA-T-TT-T-ACTC-ATTT-TCACAAAAC--AAA----TCAATATTT-Atg
gi|6 : aagtACACAGA-AATGTTGAAATC-AAGT-TT-T-GCCC-ATAT-TCACAAATC--AAA----TTAATATTT-ACACCATGATA------GCAT-TACTGGATGGAGATAT-----TA----TCA
gi|21 : ggttACACAAC-CATGTTGAAATG-TGAT-TT-T-ACTC-TCGT---ATACATC--AAA----TCAGCCTTT-ACAC------tccaaatactattgtctaaaa
gi|20 : CACAGG-AATGTTGAAATC-AATT-CT-T-------TG---CAT--ATC--AAA----TCAATTCTT-ACAc
gi|2 : TGC-AATGTTGAAATT-GAAT-TT-T-ACTCGC--T-TCACGCATC--AAA----TCAAACTTC-GCCC------ACCGGACACAT-AATT--ATGAAAACCTTGTAATA----CCAAAtccatgtata
gi|24 : gaC-AATGTGAAAAGC-AAAT-TT-T-GTTC-ATGT-CCATGCATC--AAA----TCAGTCTTT-ACAC------tttttctatcaggaattacttaagtaattatttacatttttttt
gi|1 : -AATGTTGAAATC-TACT-TT-T-ACTC-CAGT-TCACACATC--AAA----TCAATTTT--------------------CAT-GACT--ATGAAGATAT-----TAACC-TCAAAGCAATTATGCTATCAGAAACT-TG-GTATTtat
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TTAAAGGGACACTGTTGAAAATTCATTTTACTCAAGTGCACTCATTCAATCATTTTTTTCCTATGATCGCACAAACCTATGAAAACATTGACCTCGGCCAAATGCCCTTGTCTGAATCTTCATGTTTAAGAAA
Unaligned ( gi|7 ): AAAGGGAAACACGGTGTAGTCGAGGGCTACTGTTACTCATATTCACACACCAAATTGATCTTTTTATTATAAGTTATCAA
Unaligned ( gi|10 ): CTAAAGCACCATCTCAACATTACTTTCTTCTTATAACTGAGGTTGCAAATTCAAGCAATGCTTGTTAAAAA
Unaligned ( gi|15 ): TCTTAAAACATTTGAACGTACATGTATAACTATACCCATGCAAAATAGTAGACTTTAAGTATACTTATC
Unaligned ( gi|22 ): TAAAATGACACAGGGCAATATTGAAGTTGAATTATACTCATGTTTACGAATCAAATCA
Unaligned ( gi|27 ): TATTGAAAAATAGTAATCGGACAAATTGAACAATTTGTATAAA
Unaligned ( gi|28 ): CCTAAATTACCAAAATAATGAAAACCTTTCAAATATAACTGA
Alignments
lowQualScore : 11111 22222222222222 111111 222222222222222222222 1111
lowQualScore : 2 22 1 22222 1 444 1 1 0 2 4444 2 66666 55555555555555 1 333333 3 99 999999999999999999999 9 4444
lowQualScore : . .. . ..... . ... . . . . .... . ..... .............. . ...... . .. ..................... . ....
lowQualScore : 8 11 5 77777 7 888 6 8 6 0 5555 5 77777 11111111111111 0 000000 7 22 111111111111111111111 8 7777
consensus : AAGGGACACACGGCAATGTTGAAA--T-C-G-A-TTT-T---ACTCNTGT-TCACGCATC-AA----ATCAATCTTT-AC-----AC------A------GCATNA--CT--ATGAANACAT--TA--AT-C-CAAAG-AATTAT-GCTATCAGAAACT-CG-GTATT
Reference ( family-913 ) : AAGGGACACACGGCAATGTTGAAA--T-C-G-A-TTT-T---ACTCNTGT-TCACGCATC-AA----ATCAATCTTT-AC-----AC------A------GCATNA--CT--ATGAAGATAT--TA--AC-C-CAAAGCAATTAT-GCTATCAGAAACT-TG-GTATT
gi|1 : AATGTTGAAA--T-C-T-ACTTT-T---ACTCCAGT-TCACACATC-AA----ATCAATTTT-------------------------CATGA--CT--ATGAAGATAT--TA--AC-CTCAAAGCAATTAT-GCTATCAGAAACT-TG-GTATT
gi|11 : gggattAAGGGACACACAGCAATGTTGAAA--T-C-A-A-gaagaagttaacattttcattaagggccctctgtggctgaatggtctaaggccccatctcaagatcactaccctctcactgctaaggttgtacatttgagtcacgcttgtcctaaaatatttatgtgtgcttctattcgcctgagatgttactcaaccattaacacatcatatgccacttgttcatttaagatatatgccccttttcaaaatagaaatagaatgatctcacataatgagatatttttatttcatcatgtagcttgtgggaagatgggtgttcttcattgggatttatcttgtgccttccccaccagta
gi|11 : tttaAAGGGACACACAGCAATGTTAAAA--T-atgtttaaagggacacacagcaatgttaaaattaaatgt
gi|12 : tttaaagggacacacagcaatgttgaaatcaaatgtttaGGGACACATGGCAATGATGTAA--T-TTG-A-TTT-T---ACTCCTGCCTCAC--ATC-AA----ATCAGTCTTT-AC-----AC------A------taaatgt
gi|13 : tatgAAGGGACACTTTACAAAGTTGAAG--T-C-A----TT-T---AGCCTTGT-TCGTGCATCTAACTTTATCAGTCTTT-AC-----AC------A------tg
gi|14 : aAAGGGACACACGGCACTGCT--AA--T-C-A-C-TTT-T---AATCATTT-TCACAC-----------TCAATCTTTGAC-----AC------A-------CAT
gi|16 : ttaACACAGAGCAATTTTGAAA--T-T-G-A-TTT-T---ACTCATTT-TCACAAAAC-AA----ATCAATATTT-Aatat
gi|17 : aagtAAGGAGCACTTGCCAATGTTGATA--T-C-A-A-TTT-T---ATTCATGT-TCA
gi|18 : ttaAAGGGACACACAGCAACGTAGAAA--T-C-C-A-CCT-TGTAACTTCTGT-TCACACATC-AA----ATtttttcaacttatcc
gi|19 : ttaAAGGGACACACGGCAATGTTGACA--T-C-A-G-CCT-TG--ATTGGTGT-TTATG---C-AA----ATAAACCTTaa
gi|2 : GCAATGTTGAAA--T-T-GAA-TTT-T---ACTCGC-T-TCACGCATC-AA----ATCAAACTTC-GC-----CC------ACCGGACACATAA--TT--ATGAAAACCTTGTA--ATAC-CA----AATTTT-TCTATCAGGAATT-cg
gi|20 : gatCACAGGAATGTTGAAA--T-C-A-A-TTC-T-------TTG-----CATATC-AA----ATCAATTCTT-AC-----Aacttaagtaattatttacatttttttt
gi|21 : ACACAACCATGTTGAAA--TGT-G-A-TTT-T---ACTCTCGT---ATACATC-AA----ATCAGCCTTT-AC-----AC------tccatgtata
gi|22 : GACACAGGGCAATATTGAAG--T-T-G-A-ATTAT---ACTCATGT-TTACGAATC-AA----ATCAc
gi|23 : taaaatAAGGACACATGACAATGTTGAAA--T-C-A-A-T------------TGT-----GCATC-AG----GTCAGTCTTT-AC-----CC------A------
gi|24 : tatCAATGTGAAAA--G-C-A-AATTT-T---GTTCATGT-CCATGCATC-AA----ATCAGTCTTT-AC-----AC------
gi|25 : AGAGACACATGGCAATGTTGAAA--T-C-T-A-ATT-T---ACTACTGT-TTACTAATC-Atat
gi|26 : AAGGGACACACTGCAATGTTGAAA--T-T-GAA-CCT-T---ACACATGT-TTA
gi|29 : ttaAAGGGACACACAACAATGTTGAAA--T-C-a
gi|3 : tttaAAGGGACAC-------TGTTGAAAATT-C---A-TTT-T---ACTCAAGT-GCACTCATT-CA----ATCATTTTTT-TCCTATGAT------C------GCACAAACCT--ATGAAAACAT--TG--AC-C-atagtgt
gi|30 : ttaAAGGGACACACAGAGATGTTGAAA--T-CAA-A-TTT-T---tcggccaaatgcccttgtctgaatcttcatgtttaagaaa
gi|4 : ttaAAGGG-CATACCACAATGTTGAAA--T-C-GGA-TTT-T---AATCTTGT-TCACGCGTC-GA----ATCAATC------------------------------GA---T--ATGAACATAT--TAATAT-C-CAAA-----TATCACTGTTTGAAACT-CA-ATATTt
gi|5 : ttAAGGGACACACTGCAATGTTGAAA--T-C-A-ACTTT-T---ATTCCTGT-TCATGCATC-AA----CTCAGTCTTT-AC-----AC------A------GCATTA--TT--ATGAACACAT--TA-----C-CAAAGGAA-----GATATT--AAACTGTGAGTATTttagaaaatactagc
gi|6 : ACACAGAAATGTTGAAA--T-C-A-AGTTT-T---GCCCATAT-TCACAAATC-AA----ATTAATATTT-AC-----ACCATGATA------GCATTA--CTGGATGGAGATAT--TATCAT-C-CAAAact
gi|8 : ggttAAGGGACAAATGGCAATGCAGAAA--T-C-G-A-TTT-T---ACTGACGT-TCCCGCATC-AA----ATCAATACTT-AC-----AC------tactattgtctaaaa
gi|9 : taAAGGGACACACCACAGTGTTGAAA--T-C-A-A-TTT-T---ACTCATTT-TCACGCTCT-AA----ACTATTTTTT-AC-----Actataaacgctg
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAAGGGAAACACGGTGTAGTCGAGGGCTACTGTTACTCATATTCACACACCAAATTGATCTTTTTATTATAAGTTATCAA
Unaligned ( gi|10 ): CTAAAGCACCATCTCAACATTACTTTCTTCTTATAACTGAGGTTGCAAATTCAAGCAATGCTTGTTAAAAA
Unaligned ( gi|15 ): TCTTAAAACATTTGAACGTACATGTATAACTATACCCATGCAAAATAGTAGACTTTAAGTATACTTATC
Unaligned ( gi|27 ): TATTGAAAAATAGTAATCGGACAAATTGAACAATTTGTATAAA
Unaligned ( gi|28 ): CCTAAATTACCAAAATAATGAAAACCTTTCAAATATAACTGA
Alignments
lowQualScore : 11111 22222222222222 111111 22222 111 11
lowQualScore : 2 22 1 22222 1 444 1 1 0 2 4444 2 66666 55555555555555 1 333333 1 99 44444 6 0 999 77
lowQualScore : . .. . ..... . ... . . . . .... . ..... .............. . ...... . .. ..... . . ... ..
lowQualScore : 8 11 5 77777 7 888 6 8 6 0 5555 5 77777 11111111111111 0 000000 0 22 22222 7 8 555 00
consensus : AAGGGACACACGGCAATGTTGAAA--T-C-G-A-TTT-T---ACTCNTGT-TCACGCATC-AA----ATCAATCTTT-AC-----AC------A------GCATNA--CT--ATGAANACAT--TA--AT-C-CAAAG-AATTAT-NCTATCAGAAACTCGGTATT
Reference ( family-913 ) : AAGGGACACACGGCAATGTTGAAA--T-C-G-A-TTT-T---ACTCNTGT-TCACGCATC-AA----ATCAATCTTT-AC-----AC------A------GCATNA--CT--ATGAANACAT--TA--AT-C-CAAAG-AATTAT-GCTATCAGAAACTCGGTATT
gi|1 : AATGTTGAAA--T-C-T-ACTTT-T---ACTCCAGT-TCACACATC-AA----ATCAATTTT-------------------------CATGA--CT--ATGAAGATAT--TA--AC-CTCAAAGCAATTAT-GCTATCAGAAACTTGGTATT
gi|11 : gggattAAGGGACACACAGCAATGTTGAAA--T-C-A-A-gaagaagttaacattttcattaagggccctctgtggctgaatggtctaaggccccatctcaagatcactaccctctcactgctaaggttgtacatttgagtcacgcttgtcctaaaatatttatgtgtgcttctattcgcctgagatgttactcaaccattaacacatcatatgccacttgttcatttaagatatatgccccttttcaaaatagaaatagaatgatctcacataatgagatatttttatttcatcatgtagcttgtgggaagatgggtgttcttcattgggatttatcttgtgccttccccaccagta
gi|11 : tttaAAGGGACACACAGCAATGTTAAAA--T-atgtttaaagggacacacagcaatgttaaaattaaatgt
gi|12 : tttaaagggacacacagcaatgttgaaatcaaatgtttaGGGACACATGGCAATGATGTAA--T-TTG-A-TTT-T---ACTCCTGCCTCAC--ATC-AA----ATCAGTCTTT-AC-----AC------A------taaatgt
gi|13 : tatgAAGGGACACTTTACAAAGTTGAAG--T-C-A----TT-T---AGCCTTGT-TCGTGCATCTAACTTTATCAGTCTTT-AC-----AC------A------tg
gi|14 : aAAGGGACACACGGCACTGCT--AA--T-C-A-C-TTT-T---AATCATTT-TCACAC-----------TCAATCTTTGAC-----AC------A-------CAT
gi|16 : ttaACACAGAGCAATTTTGAAA--T-T-G-A-TTT-T---ACTCATTT-TCACAAAAC-AA----ATCAATATTT-Aatat
gi|17 : aagtAAGGAGCACTTGCCAATGTTGATA--T-C-A-A-TTT-T---ATTCATGT-TCA
gi|18 : ttaAAGGGACACACAGCAACGTAGAAA--T-C-C-A-CCT-TGTAACTTCTGT-TCACACATC-AA----ATtttttcaacttatcc
gi|19 : ttaAAGGGACACACGGCAATGTTGACA--T-C-A-G-CCT-TG--ATTGGTGT-TTATG---C-AA----ATAAACCTTaa
gi|2 : GCAATGTTGAAA--T-T-GAA-TTT-T---ACTCGC-T-TCACGCATC-AA----ATCAAACTTC-GC-----CC------ACCGGACACATAA--TT--ATGAAAACCTTGTA--ATAC-CA----AATTTT-TCTATCAGGAATTcg
gi|20 : gatCACAGGAATGTTGAAA--T-C-A-A-TTC-T-------TTG-----CATATC-AA----ATCAATTCTT-AC-----Aacttaagtaattatttacatttttttt
gi|21 : ACACAACCATGTTGAAA--TGT-G-A-TTT-T---ACTCTCGT---ATACATC-AA----ATCAGCCTTT-AC-----AC------tccatgtata
gi|22 : GACACAGGGCAATATTGAAG--T-T-G-A-ATTAT---ACTCATGT-TTACGAATC-AA----ATCAc
gi|23 : taaaatAAGGACACATGACAATGTTGAAA--T-C-A-A-TT------------GT-----GCATC-AG----GTCAGTCTTT-AC-----CC------A------
gi|24 : tatCAATGTGAAAA--G-C-A-AATTT-T---GTTCATGT-CCATGCATC-AA----ATCAGTCTTT-AC-----AC------
gi|25 : AGAGACACATGGCAATGTTGAAA--T-C-T-A-ATT-T---ACTACTGT-TTACTAATC-Atat
gi|26 : AAGGGACACACTGCAATGTTGAAA--T-T-GAA-CCT-T---ACACATGT-TTA
gi|29 : ttaAAGGGACACACAACAATGTTGAAA--T-C-a
gi|3 : tttaAAGGGACAC-------TGTTGAAAATT-C---A-TTT-T---ACTCAAGT-GCACTCATT-CA----ATCATTTTTT-TCCTATGAT------C------GCACAAACCT--ATGAAAACAT--TG--AC-C-atagtgt
gi|30 : ttaAAGGGACACACAGAGATGTTGAAA--T-CAA-A-TTT-T---tcggccaaatgcccttgtctgaatcttcatgtttaagaaa
gi|4 : ttaAAGGG-CATACCACAATGTTGAAA--T-C-GGA-TTT-T---AATCTTGT-TCACGCGTC-GA----ATCAATC------------------------------GA---T--ATGAACATAT--TAATAT-C-CAAA-----TATCACTGTTTGAAACTCAATATTt
gi|5 : ttAAGGGACACACTGCAATGTTGAAA--T-C-A-ACTTT-T---ATTCCTGT-TCATGCATC-AA----CTCAGTCTTT-AC-----AC------A------GCATTA--TT--ATGAACACAT--TA-----C-CAAAG-GAttagaaaatactagc
gi|6 : ACACAGAAATGTTGAAA--T-C-A-AGTTT-T---GCCCATAT-TCACAAATC-AA----ATTAATATTT-AC-----ACCATGATA------GCATTA--CTGGATGGAGATAT--TATCAT-C-CAAAagatattaaactgtgagtattact
gi|8 : ggttAAGGGACAAATGGCAATGCAGAAA--T-C-G-A-TTT-T---ACTGACGT-TCCCGCATC-AA----ATCAATACTT-AC-----AC------tactattgtctaaaa
gi|9 : taAAGGGACACACCACAGTGTTGAAA--T-C-A-A-TTT-T---ACTCATTT-TCACGCTCT-AA----ACTATTTTTT-AC-----Actataaacgctg
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAAGGGAAACACGGTGTAGTCGAGGGCTACTGTTACTCATATTCACACACCAAATTGATCTTTTTATTATAAGTTATCAA
Unaligned ( gi|10 ): CTAAAGCACCATCTCAACATTACTTTCTTCTTATAACTGAGGTTGCAAATTCAAGCAATGCTTGTTAAAAA
Unaligned ( gi|15 ): TCTTAAAACATTTGAACGTACATGTATAACTATACCCATGCAAAATAGTAGACTTTAAGTATACTTATC
Unaligned ( gi|27 ): TATTGAAAAATAGTAATCGGACAAATTGAACAATTTGTATAAA
Unaligned ( gi|28 ): CCTAAATTACCAAAATAATGAAAACCTTTCAAATATAACTGA
Alignments
lowQualScore : 11111 22222222222222 111111 22222 111 11
lowQualScore : 2 22 1 22222 1 444 1 1 0 2 4444 2 66666 55555555555555 1 333333 1 99 44444 6 0 999 44
lowQualScore : . .. . ..... . ... . . . . .... . ..... .............. . ...... . .. ..... . . ... ..
lowQualScore : 8 11 5 77777 7 888 6 8 6 0 5555 5 77777 11111111111111 0 000000 0 22 22222 7 8 555 33
consensus : AAGGGACACACGGCAATGTTGAAA--T-C-G-A-TTT-T---ACTCNTGT-TCACGCATC-AA----ATCAATCTTT-AC-----AC------A------GCATNA--CT--ATGAANACAT--TA--AT-C-CAAAG-AATTAT-NCTATCAGAAACTCGGTATT
Reference ( family-913 ) : AAGGGACACACGGCAATGTTGAAA--T-C-G-A-TTT-T---ACTCNTGT-TCACGCATC-AA----ATCAATCTTT-AC-----AC------A------GCATNA--CT--ATGAANACAT--TA--AT-C-CAAAG-AATTAT-NCTATCAGAAACTCGGTATT
gi|1 : AATGTTGAAA--T-C-T-ACTTT-T---ACTCCAGT-TCACACATC-AA----ATCAATTTT-------------------------CATGA--CT--ATGAAGATAT--TA--AC-CTCAAAGCAATTAT-GCTATCAGAAACTTGGTATT
gi|11 : gggattAAGGGACACACAGCAATGTTGAAA--T-C-A-A-gaagaagttaacattttcattaagggccctctgtggctgaatggtctaaggccccatctcaagatcactaccctctcactgctaaggttgtacatttgagtcacgcttgtcctaaaatatttatgtgtgcttctattcgcctgagatgttactcaaccattaacacatcatatgccacttgttcatttaagatatatgccccttttcaaaatagaaatagaatgatctcacataatgagatatttttatttcatcatgtagcttgtgggaagatgggtgttcttcattgggatttatcttgtgccttccccaccagta
gi|11 : tttaAAGGGACACACAGCAATGTTAAAA--T-atgtttaaagggacacacagcaatgttaaaattaaatgt
gi|12 : tttaaagggacacacagcaatgttgaaatcaaatgtttaGGGACACATGGCAATGATGTAA--T-TTG-A-TTT-T---ACTCCTGCCTCAC--ATC-AA----ATCAGTCTTT-AC-----AC------A------taaatgt
gi|13 : tatgAAGGGACACTTTACAAAGTTGAAG--T-C-A----TT-T---AGCCTTGT-TCGTGCATCTAACTTTATCAGTCTTT-AC-----AC------A------tg
gi|14 : aAAGGGACACACGGCACTGCT--AA--T-C-A-C-TTT-T---AATCATTT-TCACAC-----------TCAATCTTTGAC-----AC------A-------CAT
gi|16 : ttaACACAGAGCAATTTTGAAA--T-T-G-A-TTT-T---ACTCATTT-TCACAAAAC-AA----ATCAATATTT-Aatat
gi|17 : aagtAAGGAGCACTTGCCAATGTTGATA--T-C-A-A-TTT-T---ATTCATGT-TCA
gi|18 : ttaAAGGGACACACAGCAACGTAGAAA--T-C-C-A-CCT-TGTAACTTCTGT-TCACACATC-AA----ATtttttcaacttatcc
gi|19 : ttaAAGGGACACACGGCAATGTTGACA--T-C-A-G-CCT-TG--ATTGGTGT-TTATG---C-AA----ATAAACCTTaa
gi|2 : GCAATGTTGAAA--T-T-GAA-TTT-T---ACTCGC-T-TCACGCATC-AA----ATCAAACTTC-GC-----CC------ACCGGACACATAA--TT--ATGAAAACCTTGTA--ATAC-CA----AATTTT-TCTATCAGGAATTcg
gi|20 : gatCACAGGAATGTTGAAA--T-C-A-A-TTC-T-------TTG-----CATATC-AA----ATCAATTCTT-AC-----Aacttaagtaattatttacatttttttt
gi|21 : ACACAACCATGTTGAAA--TGT-G-A-TTT-T---ACTCTCGT---ATACATC-AA----ATCAGCCTTT-AC-----AC------tccatgtata
gi|22 : GACACAGGGCAATATTGAAG--T-T-G-A-ATTAT---ACTCATGT-TTACGAATC-AA----ATCAc
gi|23 : taaaatAAGGACACATGACAATGTTGAAA--T-C-A-A-TT------------GT-----GCATC-AG----GTCAGTCTTT-AC-----CC------A------
gi|24 : tatCAATGTGAAAA--G-C-A-AATTT-T---GTTCATGT-CCATGCATC-AA----ATCAGTCTTT-AC-----AC------
gi|25 : AGAGACACATGGCAATGTTGAAA--T-C-T-A-ATT-T---ACTACTGT-TTACTAATC-Atat
gi|26 : AAGGGACACACTGCAATGTTGAAA--T-T-GAA-CCT-T---ACACATGT-TTA
gi|29 : ttaAAGGGACACACAACAATGTTGAAA--T-C-a
gi|3 : tttaAAGGGACAC-------TGTTGAAAATT-C---A-TTT-T---ACTCAAGT-GCACTCATT-CA----ATCATTTTTT-TCCTATGAT------C------GCACAAACCT--ATGAAAACAT--TG--AC-C-atagtgt
gi|30 : ttaAAGGGACACACAGAGATGTTGAAA--T-CAA-A-TTT-T---tcggccaaatgcccttgtctgaatcttcatgtttaagaaa
gi|4 : ttaAAGGG-CATACCACAATGTTGAAA--T-C-GGA-TTT-T---AATCTTGT-TCACGCGTC-GA----ATCAATC------------------------------GA---T--ATGAACATAT--TAATAT-C-CAAA-----TATCACTGTTTGAAACTCAATATTt
gi|5 : ttAAGGGACACACTGCAATGTTGAAA--T-C-A-ACTTT-T---ATTCCTGT-TCATGCATC-AA----CTCAGTCTTT-AC-----AC------A------GCATTA--TT--ATGAACACAT--TA-----C-CAAAG-GAttagaaaatactagc
gi|6 : ACACAGAAATGTTGAAA--T-C-A-AGTTT-T---GCCCATAT-TCACAAATC-AA----ATTAATATTT-AC-----ACCATGATA------GCATTA--CTGGATGGAGATAT--TATCAT-C-CAAAagatattaaactgtgagtattact
gi|8 : ggttAAGGGACAAATGGCAATGCAGAAA--T-C-G-A-TTT-T---ACTGACGT-TCCCGCATC-AA----ATCAATACTT-AC-----AC------tactattgtctaaaa
gi|9 : taAAGGGACACACCACAGTGTTGAAA--T-C-A-A-TTT-T---ACTCATTT-TCACGCTCT-AA----ACTATTTTTT-AC-----Actataaacgctg
blockSeqs : A AT G TGA A GTA C C T CTTT G CTATG ACCGGACA A ACCT A TG ATAT . GG CA
blockSeqs : G . . GAA . G T . . . . . CATGATAG A CTGG A . TCAT . A T
blockSeqs : T . . AAA . . A . . . . . CG G TT C . ATA . .
blockSeqs : G . . GAA . . A . . . . . AG T TT C . AC .
blockSeqs : A . . AAA . . A . . . . . A T T G . . .
blockSeqs : G . . GGA . . C . . . . . .
blockSeqs : A . . AAC . . G . . . . .
blockSeqs : G . . AAG . . G . . . . .
blockSeqs : A . . AA . . T . . . . .
blockSeqs : A . . AC . . T . . . . .
blockSeqs : G . . GA . . A . . . . .
blockSeqs : G . . AA . . A . . . . .
blockSeqs : G . . CA . . C . . . . .
blockSeqs : T . . AG . . A . . . . .
blockSeqs : A . . AA . . A . . . .
blockSeqs : A . . GA . . T . . .
blockSeqs : C . . GA . . C . . .
blockSeqs : T . . AA . . A . . .
blockSeqs : A . . TA . . A . .
blockSeqs : G . . GA . . A .
blockSeqs : C . . AA . . . .
blockSeqs : . . . A . .
blockSeqs : . . A
blockSeqs : . .
blockSeqs : . .
blockSeqCons : AA*** AG************ ACAC*
originalCons : AAGGGACACACGGCAATGTTGAAA--T-C-G-A-TTT-T---ACTCNTGT-TCACGCATC-AA----ATCAATCTTT-AC-----AC------A------GCATNA--CT--ATGAANACAT--TA--AT-C-CAAAG-AATTAT-NCTATCAGAAACTCGGTATT
finalCons : AAGGGACACACGGCAATGTTGAAA--T-CAA---TTT-T---ACTCNTGT-TCACGCATC-AA----ATCAATCTTT-AC-----ACAG------------CATNA--CT--ATGAANACAT--TAACAC-C-CAAAG-AATTAT-NCTATCAGAAACTCGGTATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAAGGGAAACACGGTGTAGTCGAGGGCTACTGTTACTCATATTCACACACCAAATTGATCTTTTTATTATAAGTTATCAA
Unaligned ( gi|10 ): CTAAAGCACCATCTCAACATTACTTTCTTCTTATAACTGAGGTTGCAAATTCAAGCAATGCTTGTTAAAAA
Unaligned ( gi|15 ): TCTTAAAACATTTGAACGTACATGTATAACTATACCCATGCAAAATAGTAGACTTTAAGTATACTTATC
Unaligned ( gi|27 ): TATTGAAAAATAGTAATCGGACAAATTGAACAATTTGTATAAA
Unaligned ( gi|28 ): CCTAAATTACCAAAATAATGAAAACCTTTCAAATATAACTGA
Alignments
lowQualScore : 22222222222222 111111 1111 111 11
lowQualScore : 2 22 1 9 1 4 444 1 1 0 2 4444 2 66666 55555555555555 1 333333 1 99 0000 777 44
lowQualScore : . .. . . . . ... . . . . .... . ..... .............. . ...... . .. .... ... ..
lowQualScore : 8 11 5 2 5 8 888 6 8 6 0 5555 5 77777 11111111111111 0 000000 0 22 0000 222 33
consensus : AAGGGACACACGGCAATGTTGAAA--T-C-A-A-TTTT---ACTCNTGT-TCACGCATC-AA----ATCAATCTTT-AC-----AC------A------GCATNA--CT--ATGAANACAT--TAACACCCAAAG-AATTAT-NCTATCAGAAACTCGGTATT
Reference ( family-913 ) : AAGGGACACACGGCAATGTTGAAA--T-C-A-A-TTTT---ACTCNTGT-TCACGCATC-AA----ATCAATCTTT-AC-----AC------A------GCATNA--CT--ATGAANACAT--TAACACCCAAAG-AATTAT-NCTATCAGAAACTCGGTATT
gi|1 : AATGTTGAAA--T-CTA-C-TTTT---ACTCCAGT-TCACACATC-AA----ATCAATTTT-------------------------CATGA--CT--ATGAAGATAT--TAAC-CTCAAAGCAATTAT-GCTATCAGAAACTTGGTATT
gi|11 : gggattAAGGGACACACAGCAATGTTGAAA--T-C-A-A-gaagaagttaacattttcattaagggccctctgtggctgaatggtctaaggccccatctcaagatcactaccctctcactgctaaggttgtacatttgagtcacgcttgtcctaaaatatttatgtgtgcttctattcgcctgagatgttactcaaccattaacacatcatatgccacttgttcatttaagatatatgccccttttcaaaatagaaatagaatgatctcacataatgagatatttttatttcatcatgtagcttgtgggaagatgggtgttcttcattgggatttatcttgtgccttccccaccagta
gi|11 : tttaAAGGGACACACAGCAATGTTAAAA--T-T-A-A-atgtttaaagggacacacagcaatgttaaaattaaatgt
gi|12 : tttaaagggacacacagcaatgttgaaatcaaatgtttaGGGACACATGGCAATGATGTAA--T-TTG-A-TTTT---ACTCCTGCCTCAC--ATC-AA----ATCAGTCTTT-AC-----AC------A------atgt
gi|13 : tatgAAGGGACACTTTACAAAGTTGAAG--T-C-A----TTT---AGCCTTGT-TCGTGCATCTAACTTTATCAGTCTTT-AC-----AC------A------tg
gi|14 : aAAGGGACACACGGCACTGCT--AA--T-C-A-C-TTTT---AATCATTT-TCACAC-----------TCAATCTTTGAC-----AC------A-------CAT
gi|16 : ttaACACAGAGCAATTTTGAAA--T-T-G-A-TTTT---ACTCATTT-TCACAAAAC-AA----ATCAATATTT-Aatat
gi|17 : aagtAAGGAGCACTTGCCAATGTTGATA--T-C-A-A-TTTT---ATTCATGT-TCA
gi|18 : ttaAAGGGACACACAGCAACGTAGAAA--T-C-C-A-CCTTGTAACTTCTGT-TCACACATC-AA----ATtttttcaacttatcc
gi|19 : ttaAAGGGACACACGGCAATGTTGACA--T-C-A-G-CCTTG--ATTGGTGT-TTATG---C-AA----ATAAACCTTaa
gi|2 : GCAATGTTGAAA--T-TGA-A-TTTT---ACTCGC-T-TCACGCATC-AA----ATCAAACTTC-GC-----CC------ACCGGACACATAA--TT--ATGAAAACCTTGTAATACC----A-AATTTT-TCTATCAGGAATTcg
gi|20 : gatCACAGGAATGTTGAAA--T-C-A-A-TTCT-------TTG-----CATATC-AA----ATCAATTCTT-AC-----Aacttaagtaattatttacatttttttt
gi|21 : ACACAACCATGTTGAAA--TGT-G-A-TTTT---ACTCTCGT---ATACATC-AA----ATCAGCCTTT-AC-----AC------tccatgtata
gi|22 : GACACAGGGCAATATTGAAG--T-TGA-A-TTAT---ACTCATGT-TTACGAATC-AA----ATCAc
gi|23 : taaaatAAGGACACATGACAATGTTGAAA--T-C-A-A-T-----------TGT-----GCATC-AG----GTCAGTCTTT-AC-----CC------A------
gi|24 : tatCAATGTGAAAA--G-C-A-AATTTT---GTTCATGT-CCATGCATC-AA----ATCAGTCTTT-AC-----AC------
gi|25 : AGAGACACATGGCAATGTTGAAA--T-C-T-A-ATTT---ACTACTGT-TTACTAATC-Atat
gi|26 : AAGGGACACACTGCAATGTTGAAA--T-TGA-A-CCTT---ACACATGT-TTA
gi|29 : ttaAAGGGACACACAACAATGTTGAAA--T-C-A-a
gi|3 : tttaAAGGGACAC-------TGTTGAAAATT-C-A---TTTT---ACTCAAGT-GCACTCATT-CA----ATCATTTTTT-TCCTATGAT------C------GCACAAACCT--ATGAAAACAT--TGACtagtgt
gi|30 : ttaAAGGGACACACAGAGATGTTGAAA--T-CAA-A-TTTT---ctcggccaaatgcccttgtctgaatcttcatgtttaagaaa
gi|4 : ttaAAGGG-CATACCACAATGTTGAAA--T-C-GGA-TTTT---AATCTTGT-TCACGCGTC-GA----ATCAATC------------------------------GA---T--ATGAACATAT--TAATATCCAAA-----TATCACTGTTTGAAACTCAATATTt
gi|5 : ttAAGGGACACACTGCAATGTTGAAA--T-C-A-ACTTTT---ATTCCTGT-TCATGCATC-AA----CTCAGTCTTT-AC-----AC------A------GCATTA--TT--ATGAACACAT--TA----CCAAAG-GAttagaaaatactagc
gi|6 : ACACAGAAATGTTGAAA--T-C-A-AGTTTT---GCCCATAT-TCACAAATC-AA----ATTAATATTT-AC-----ACCATGATA------GCATTA--CTGGATGGAGATAT--TATCATCCAAAagatattaaactgtgagtattact
gi|8 : ggttAAGGGACAAATGGCAATGCAGAAA--T-C-G-A-TTTT---ACTGACGT-TCCCGCATC-AA----ATCAATACTT-AC-----AC------tactattgtctaaaa
gi|9 : taAAGGGACACACCACAGTGTTGAAA--T-C-A-A-TTTT---ACTCATTT-TCACGCTCT-AA----ACTATTTTTT-AC-----Actataaacgctg
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AAAGGGAAACACGGTGTAGTCGAGGGCTACTGTTACTCATATTCACACACCAAATTGATCTTTTTATTATAAGTTATCAA
Unaligned ( gi|10 ): CTAAAGCACCATCTCAACATTACTTTCTTCTTATAACTGAGGTTGCAAATTCAAGCAATGCTTGTTAAAAA
Unaligned ( gi|15 ): TCTTAAAACATTTGAACGTACATGTATAACTATACCCATGCAAAATAGTAGACTTTAAGTATACTTATC
Unaligned ( gi|27 ): TATTGAAAAATAGTAATCGGACAAATTGAACAATTTGTATAAA
Unaligned ( gi|28 ): CCTAAATTACCAAAATAATGAAAACCTTTCAAATATAACTGA