lowQualScore : 4444 1 1 3 111 1 111 1 1 1 111 33333333333 1111111
lowQualScore : 1 8 1 9999 0 6 8 6 9 0 2 66 1 2 0 1 5 555 4 0 4 3 4 3 3 6 6 111 1 7 5 2 7 0 2 6 0 6 000 77777777777 8888888 7 5 5 1 4
lowQualScore : . . . .... . . . . . . . .. . . . . . ... . . . . . . . . . ... . . . . . . . . . . ... ........... ....... . . . . .
lowQualScore : 0 0 4 0000 8 0 0 0 5 0 5 66 0 0 8 4 0 222 6 8 0 0 0 0 5 7 0 777 5 1 7 1 1 7 1 0 6 7 000 99999999999 6666666 9 7 9 0 0
consensus : NGCCAACACAGAGGTTCGGGTTTACGATATATCGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGAACCGTTTACA-GAGTTTACGATATCTCGTGACAGTGAGC-TGTTCTCTGGT-TCAAATCAAGGGTATACGCAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGCGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATAAGTCT-A-AAATGAATTGTGATATAGGAGTATATGTTCNGGANTNGGCTATTTNATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGTA-T-CTAATATATTTACAGCCAAGTNAATTATGAATGTATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAACAAAAATAACAAC---GCAGA--TA--CCGTCATTTC-------AAGCAAAACA-TGGACAANATATCAATTTATATACGTTTTCATAACACGCGGCAAAATGTACANCCAAGCTTAT
Reference ( gi|1 ) : CGCCAACACAGAGGTTCGGGTTTACGATATATCGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGAACCGTTTACA-TA-TTTACGATATCTCGTGACAGTGAAC-TGTTCTCTGGT-TCAAATCAAGGGTATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATACACAG-AGTCGTTTATACATTACCAAAATACTTCGACTTAAACAAGCGTCTCCTGGAATATTT-ACGAAATCCACTTACAGCTTTAGATACGTCT-A-AAATGAACTGTGATATAGGAGTATATGGTCAGGAATTGGCTATTTTATACAGAACATCTGCAGGGG-AACACCGCCTGCTACTTTATC---AATAATAATTATGTA-T-CTAATATATTTACAGCCAAGTTAATTATGAATATGTGTAAAACGTATTTGAAACAATAGAGCTAATTGTTAACAAAAATAACAAC---GCAGA--TA--CTGTCATTTC-------AAGGAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGCGACAAAATGTACAACCAAGCTTAT
gi|4 : GCCAACACAGAGTTTTGGGTTTACGATATATCGTGATAGTGAGTCGTTCCCTTGGCC-GGACTTGCCATCACATAGAACCGTTTACA-GAGTTTACGGTAAATTGTGATAGTGAGC-TGTTCTCTGGT-TCAAATCAAGGGTATACACAGAACCGTTTACGGATTAT--GTTAACAACATATTCCGAGTCGTTCACTAAATGGCAATAAACATTATCACAGGAACAGTTTAAGTTCCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGTGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATGAGTCT-A-AAATGAAGTGTGATATAGGAGTATATGTTCAGGAATTGACTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTCTATC---AATCATAATTATGTA-T-CTTATATATTTACAGCCAAGTAAATTATGAATATATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAA
gi|2 : GCCAAAACAGCGGTTCGGGTTTACGATATATCGTGATAGTGAGTCGTTCCCTTGGCC-GGACTTGCCATCACATAGAACCGTTTACA-GAGTTTACGATATCTCGTGACAGTGAGC-TGTTCTCTGGT-TCAAATCAAGTGTATACATAGAACCGTTAACGGATTCTCTGTTTACAAAATATTCCGAGTCGTTCACTTAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTTCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTTAACAAGCGTCTCCTGGAATATTTAACGAAATCCGCTAACAGCTTTAGATACGTCT-T-AAATGGATTGTGATATAGGAGTATATGTTCAGGAATTGGCTATTTTATACAGAACGTCTGCAGGGGAAACACCACCTGCTACTTTATC---AATCATAATTATGTA-T-CTAATATATTTACAGCCAAGTAAATTATGGATATATGCAGAACTTATTTGAAACAATAGAGCTATTTGTTAA
gi|6 : gcaCAACACAGAGGTTCGGGTTTACGATATATCGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGCACCGTTTACA-GAGTTTACGATATCTCGTGACAGTGAGC-TGTTCTCTGGT-TCAAATCAAGGTTATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAAAAGCAATAAACATTATCACAAGAACAGTTATAGTTCCAAAATAACAGTATACACAG-AGTCGTTTATACATTACCAAAACACTTCGACTAAAACAAGCGTCTCCTGGAATATTT-ACGAAATCCACTTACAGC-TTAAATACGTCT-G-AAATGAACTGTGATATAGGAGTATATGGTCAGGAATTGGCTATTTTATACATAACGTCCGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGTA-T-TTAAAATATTTACATCCAAGTTAATTATGAATATATGTAAAACGTATTTGAAACAATAGAGCTACTTGTTAA
gi|5 : GAGTTTACGATATCTCGTGATAGTAAGCCGTTCCCTGGGCC-GGACAAGACAAAACATATAACCGTTTACAGCG-TTTACGATATCTCATGACAGTGAGC-TGTTCTCTGGTGTCAGATCAAGGGTATAAGCTGAACCGTTTATGGATTCTCTGTTAACAGCGTATTCTGAGTC
gi|12 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacaGAGTTTGCGATATTTCATAATGGTAAGCCGTTCCCTGGGCCTAGA-TTGACAACACATGGAACCGTTTACA---------GATGTTTCG--ATAATGAGCCTTTTTTCTGATATAAAATATATGGTATACGCAGAACTGTTTATGGATTCTCTGTAAACAACATAGTCCGAGTCGTTCA
gi|8 : agtccgggtttacgatatctcgtgaaagtgagccattccctgggtcgaacttgaggacacatataattgtttacagagttttcgatatgtcatgataatgagccgttcgatgggccttacttgacaatacatacaattgttgacaGTTCCAAAATAACAGTATTCTCAGTAGT-------ACGTTACCAAAACCCTTTGACTGAAACAATCGTCTCCTAGAATATTTTACGAAATCCACTTACAGCTTTATACAATTCT-ACAAATAAATTGTAATAGATGAACATACGTTCTGGACAAGGTTGTTTGATACAGGACA-----------AACACCACCTGCTTCTGTATC---AATGGTAATGATGTAAT-CTAATAAACTCACAGTCAAGTAAATTCTGGATGTATGTAAAACGTATTTGAAACAACAAAACTATTTGATAACAAAACTAGCAAC---GTA-A--TA--T---------------------AAAC---GGGCAATATATCAGTTTCTACATATTTTCATTACACGCAGCAGAAAGTACATCCAAACT
gi|13 : AAAACCTTTTGAATTAAACACTCGTCTCCTAGAATGTTTTACGAAATCCACTTACAGCTTTAAATAAGTCTTA-AACTGAATTGTAATATAAAAATATATGTTCTGGACTAGGCCATCTGATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATCAATAATAATAATTATGTATT-CTAATG-A---------AAGTTAATTATGAACGAATGTAAAACGTATTTGAAACAAAAGAGCTATTTGTTAATCAAAATAACAAC---GCAGATTTT--CCGATATTTC-------AAGCAAAACA-TGGACAATATATCaactttaccatgtgttgaaaacaaa
gi|3 : TGTTCTGGACTAGGCCATCTGATACAGAACGTCTGCAGGGG-AACACCACTTGCTACTTTATC---AATAATAATTATGTATT-CTAATG-A---------AAGTTAATTATGAACGAATGTAAAACGTATTTGAAACAAAAGAGCTATTTGTTAATCAAAATAACAAC---GCAGATTTT--CCGATATTTC-------AAGCAAAACA-AGGACAATATATCAATTTATACAAATTTCCATAGCACACGGCAAAATGTACATCCAAGCTCATca
gi|7 : TGTA-TTCTAATAGATTTACAGCCAAGTTAATTATGAATGTATATAAAACG-ATTTGAAACAATAAAGCTATTAGTTAACAAAAATAACAAC---GCAGA--T---------TTTCTGGGGGGGGGGGGAATATTGGAAAATATATCAA---------GTTTTCATCACAAGCGGTAAAATGTACATCCGAGCTAATcgcgctgtatataaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttagtgctgaaatatatgtaaatacattttgtaatgaaagtatatgcagctagataaagctagagggccttaaacaggttaataataaaatag
gi|11 : TAACAAAAATAACAAC---GCAGA--TA--CTGTCATTTC-------AAGGAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGCGACAAAATGTACAACCAAGCTTATtttacattgtaaataaaattgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgaacacgagtttagttctgaacgatatgtatattttgcaatgaaagtatttgcagctagataaagccagagggcctcgaacagattaataataaaacagt
gi|9 : TAACAAAAACAACAAA---GCAGA--TATTCCGTCATTTC-------AAGCAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGATACAAAATGTACAACCAAGCTTATttaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctgaacaggagttaagttctgaacgatatgtataaacattttgcaatgaaagtattagcagctagataaagccagggggcctcaaacagattaataatcaaacagt
gi|10 : TAACAAAAACAACAACAACGAAGA--TATTCCGTCATTTC-------AAGCAAAACA-TGGACAAAATATTAATTTATATACGTTTTCATAACACGAGACAAAATGTACAACCAAGCTTATtttacaacgcgatgtaaattgtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtttagttctgaacgatatgtatatacattttgcaattaaagtattagcagctggataaagccagagggcctcaaacagattaataatcaaataattttaacactagt
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): ATGAAAGTTTTTGCAGCTACATAAAGACAGAGGGCCACAAACAGATCAATAATAAAATAAT
Unaligned ( gi|15 ): CTGTTGGAAGTGGGAGTGTGCTGATATGTGGTCATAGCTATTGTAATCGCTCC
Unaligned ( gi|16 ): GATAAAGCCAGAGGGCCTCGAACAGACTAATAATAAAACAGT
Unaligned ( gi|17 ): AACAGACTCGTATCTACAAATGAATCCGAGCGATGGTAGTG
Alignments
lowQualScore : 111 111 1 222222 1111111
lowQualScore : 3 2 5 55 3 5 5 3 999999 3 999999 1 1 3 8 4 1 3 2 3 8 3 3 111 1 1 1 1 5 000 5 0 5 9 5 1 888 222222 3 33 6666666 2 5 1 1
lowQualScore : . . . .. . . . . ...... . ...... . . . . . . . . . . . . ... . . . . . ... . . . . . . ... ...... . .. ....... . . . .
lowQualScore : 2 5 0 00 6 1 2 6 666666 3 666666 0 4 3 0 4 9 9 4 2 0 5 0 222 0 0 0 0 7 000 0 0 0 5 1 0 888 111111 4 88 2222222 5 0 0 0
consensus : NGCCAACACAGAGGTCCGGGTTTACGATATNT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACTTGNCANCACATAGAACCGTTTA-CA------GA-GT------TTACGATATCTCGTGATAGTGAGC-CGTTCCCTGGT-TC-AGATCAAGGGTATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATNCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGCGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATANGTCT-A-AAATGAATTGTGATATAGGAGTATATGTTCNGGAATNGGCTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGT-A-T-CTAATATATTTACAGCCAAGTTAATTATGAATGTATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAACAAAAATAACAAC---GCAGA--TA--CCGTCATTTC-------AAGCAAAACA-TGGACAANATATCAATTTATATACGTTTTCATAACACGCGGCAAAATGTACANCCAAGCTTAT
Reference ( family-9020 ) : NGCCAACACAGAGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------GA-GT------TTACGATATCTCGTGACAGTGAGC-TGTTCTCTGGT-TC-AAATCAAGGGTATACGCAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGCGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATAAGTCT-A-AAATGAATTGTGATATAGGAGTATATGTTCNGGANTNGGCTATTTNATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGT-A-T-CTAATATATTTACAGCCAAGTNAATTATGAATGTATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAACAAAAATAACAAC---GCAGA--TA--CCGTCATTTC-------AAGCAAAACA-TGGACAANATATCAATTTATATACGTTTTCATAACACGCGGCAAAATGTACANCCAAGCTTAT
gi|1 : GCCAACACAGAGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------TA--T------TTACGATATCTCGTGACAGTGAAC-TGTTCTCTGGT-TC-AAATCAAGGGTATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATACACAG-AGTCGTTTATACATTACCAAAATACTTCGACTTAAACAAGCGTCTCCTGGAATATTT-ACGAAATCCACTTACAGCTTTAGATACGTCT-A-AAATGAACTGTGATATAGGAGTATATGGTCAGGAATTGGCTATTTTATACAGAACATCTGCAGGGG-AACACCGCCTGCTACTTTATC---AATAATAATTATGT-A-T-CTAATATATTTACAGCCAAGTTAATTATGAATATGTGTAAAACGTATTTGAAACAATAGAGCTAATTGTTAACAAAAATAACAAC---GCAGA--TA--CTGTCATTTC-------AAGGAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGCGACAAAATGTACAACCAAGCTTAT
gi|10 : cTAACAAAAACAACAACAACGAAGA--TATTCCGTCATTTC-------AAGCAAAACA-TGGACAAAATATTAATTTATATACGTTTTCATAACACGAGACAAAATGTACAACCAAGCTTAT
gi|11 : TAACAAAAATAACAAC---GCAGA--TA--CTGTCATTTC-------AAGGAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGCGACAAAATGTACAACCAAGCTTATtttacaacgcgatgtaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagttctgaacgatatgtatatacattttgctatgaaagtattagcagctagataaagccagagggtctcaaatagattaataatcaaatagt
gi|12 : GTCCGGGTTTACGATATCT--CGTGAAAGTGAGCCATTCCCTGGGTC-GAACTTGAGGACACATATAATTGTTTA-CA------GA-GT------TTTCGATATGTCATGATAATGAGC-CGTTCttaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctgaacaggagttaagttctgaacgatatgtataaacattttgcaatgaaagtattagcagctagataaagccagggggcctcaaacagattaataatcaaacagt
gi|12 : aGAGTTTTCGATATGT--CATGATAATGAGCCGTTCGATGGGCC-TTACTTGACAATACATACAATTGTTGA-CA------GA-GT------TTGCGATATTTCATAATGGTAAGC-CGTTCCCTGGG-CCTAGATTGACA--ACACATGGAACCGTTTACAGATgatgggccttacttgacaatacatacaattgttgacagagtttgcgatatttcataatggtaagccgttccctgggcctagattgacaacacatggaaccgtttacagatgtttcgataatgagccttttttctgatataaaatatatggtatacgcagaactgtttatggattctctgtaaacaacatagtccgagtcgttca
gi|12 : agtccgggtttacgatatctcgtgaaagtgagccattccctgggtcgaacttgaggacacatataattgtttacaGAGTTTGCGATATTT--CATAATGGTAAGCCGTTCCCTGGGCCTAGA-TTGACAACACATGGAACCGTTTA-CA------GATGT------TT-CGATA----------ATGAGCCTTTTTTCTGATATA-AAATATATGGTATACGCAGAACTGTTTATGGATTCTCTGTAAACAACATAGTCCGAGTCGTTCAgtttcgataatgagccttttttctgatataaaatatatggtatacgcagaactgtttatggattctctgtaaacaacatagtccgagtcgttca
gi|13 : agtccgggtttacgatatctcgtgaaagtgagccattccctgggtcgaacttgaggacacatataattgtttacagagttttcgatatgtcatgataatgagccgttcgatgggccttacttgacaatacatacaattgttgacaAAAACCTTTTGAATTAAACACTCGTCTCCTAGAATGTTTTACGAAATCCACTTACAGCTTTAAATAAGTCTTA-AACTGAATTGTAATATAAAAATATATGTTCTGGACTAGGCCATCTGATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATCAATAATAATAATTATGT-ATT-CTAATG-A---------AAGTTAATTATGAACGAATGTAAAACGTATTTGAAACAAAAGAGCTATTTGTTAATCAAAATAACAAC---GCAGATTTT--CCGATATTTC-------AAGCAAAACA-TGGACAATATATC
gi|2 : GCCAAAACAGCGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTTGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------GA-GT------TTACGATATCTCGTGACAGTGAGC-TGTTCTCTGGT-TC-AAATCAAGTGTATACATAGAACCGTTAACGGATTCTCTGTTTACAAAATATTCCGAGTCGTTCACTTAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTTCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTTAACAAGCGTCTCCTGGAATATTTAACGAAATCCGCTAACAGCTTTAGATACGTCT-T-AAATGGATTGTGATATAGGAGTATATGTTCAGGAATTGGCTATTTTATACAGAACGTCTGCAGGGGAAACACCACCTGCTACTTTATC---AATCATAATTATGT-A-T-CTAATATATTTACAGCCAAGTAAATTATGGATATATGCAGAACTTATTTGAAACAATAGAGCTATTTGTTAAca
gi|3 : gcaTGTTCTGGACTAGGCCATCTGATACAGAACGTCTGCAGGGG-AACACCACTTGCTACTTTATC---AATAATAATTATGT-ATT-CTAATG-A---------AAGTTAATTATGAACGAATGTAAAACGTATTTGAAACAAAAGAGCTATTTGTTAATCAAAATAACAAC---GCAGATTTT--CCGATATTTC-------AAGCAAAACA-AGGACAATATATCAATTTATACAAATTTCCATAGCACACGGCAAAATGTACATCCAAGCTCAT
gi|4 : GCCAACACAGAGTTTTGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTTGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------GA-GT------TTACGGTAAATTGTGATAGTGAGC-TGTTCTCTGGT-TC-AAATCAAGGGTATACACAGAACCGTTTACGGATTAT--GTTAACAACATATTCCGAGTCGTTCACTAAATGGCAATAAACATTATCACAGGAACAGTTTAAGTTCCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGTGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATGAGTCT-A-AAATGAAGTGTGATATAGGAGTATATGTTCAGGAATTGACTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTCTATC---AATCATAATTATGT-A-T-CTTATATATTTACAGCCAAGTAAATTATGAATATATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAAcgcgctgtatataaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttagtgctgaaatatatgtaaatacattttgtaatgaaagtatatgcagctagataaagctagagggccttaaacaggttaataataaaatag
gi|5 : ------GA-AT------TAGCGATATCTCATGATATTGAGC-CATTCCATGGT-T
gi|5 : agttcGTCCGAGTTAACGGTATGTTTCGTGATATTGAGTC-TTTTTTGAGCC-CAACGTGTTATGAC--AGAACAGTTTA-CACAGTCCGA-GT------CAACGGTGTTTTATGATAGTGAAC-CTTTGCCTGttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacagagtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacataACACAG---TCCGAGTCAACGGTGTTT--TATGATAGTGAACCTTTGCCTGAAC--GAACTTGATAATACATAGAACAGTTAAACA------GA-GTCCGGGTTTGCGATATCTCGTGATAGTGAGC-CGTTCCCTGGG-CC-GGA-CAAGACAAAACATATAACCGTTTACAGAaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacagagtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttACAGAG-TCCGGGTTTGCGATATCT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACAAGACAAAACATATAACCGTTTA-CA------GA-GT------TTACGATATCTCGTGATAGTAAGC-CGTTCCCTGGG-CC-GGA-CAAGACAAAACATATAACCGTTTACAGgtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaGAGTTTACGATATCT--CGTGATAGTAAGCCGTTCCCTGGGCC-GGACAAGACAAAACATATAACCGTTTA-CA------GC-GT------TTACGATATCTCATGACAGTGAGC-TGTTCTCTGGTGTC-AGATCAAGGGTATAAGCTGAACCGTTTATGGATTCTCTGTTAACAGCGTATTCTGAGTCcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|6 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacaCAACACAGAGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGCACCGTTTA-CA------GA-GT------TTACGATATCTCGTGACAGTGAGC-TGTTCTCTGGT-TC-AAATCAAGGTTATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAAAAGCAATAAACATTATCACAAGAACAGTTATAGTTCCAAAATAACAGTATACACAG-AGTCGTTTATACATTACCAAAACACTTCGACTAAAACAAGCGTCTCCTGGAATA-TTTACGAAATCCACTTACAGC-TTAAATACGTCT-G-AAATGAACTGTGATATAGGAGTATATGGTCAGGAATTGGCTATTTTATACATAACGTCCGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGT-A-T-TTAAAATATTTACATCCAAGTTAATTATGAATATATGTAAAACGTATTTGAAACAATAGAGCTACTTGTTAA
gi|7 : TGT-A-TTCTAATAGATTTACAGCCAAGTTAATTATGAATGTATATAAAACG-ATTTGAAACAATAAAGCTATTAGTTAACAAAAATAACAAC---GCAGA--T---------TTTCTGGGGGGGGGGGGAATATTGGAAAATATATCAA---------GTTTTCATCACAAGCGGTAAAATGTACATCCGAGCTAAT
gi|8 : GTTCCAAAATAACAGTATTCTCAGTAGT-------ACGTTACCAAAACCCTTTGACTGAAACAATCGTCTCCTAGAATATTTTACGAAATCCACTTACAGCTTTATACAATTCT-ACAAATAAATTGTAATAGATGAACATACGTTCTGGACAAGGTTGTTTGATACAGGAC----------A-AACACCACCTGCTTCTGTATC---AATGGTAATGATGTAA-T-CTAATAAACTCACAGTCAAGTAAATTCTGGATGTATGTAAAACGTATTTGAAACAACAAAACTATTTGATAACAAAACTAGCAAC---GTA-A--TA--T---------------------AAAC---GGGCAATATATCAGTTTCTACATATTTTCATTACACGCAGCAGAAAGTACATCCAAACTtttacattgtaaataaaattgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgaacacgagtttagttctgaacgatatgtatattttgcaatgaaagtatttgcagctagataaagccagagggcctcgaacagattaataataaaacagt
gi|9 : TAACAAAAACAACAAA---GCAGA--TATTCCGTCATTTC-------AAGCAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGATACAAAATGTACAACCAAGCTTATaactttaccatgtgttgaaaacaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATGAAAGTTTTTGCAGCTACATAAAGACAGAGGGCCACAAACAGATCAATAATAAAATAAT
Unaligned ( gi|15 ): CTGTTGGAAGTGGGAGTGTGCTGATATGTGGTCATAGCTATTGTAATCGCTCC
Unaligned ( gi|16 ): GATAAAGCCAGAGGGCCTCGAACAGACTAATAATAAAACAGT
Unaligned ( gi|17 ): AACAGACTCGTATCTACAAATGAATCCGAGCGATGGTAGTG
Alignments
lowQualScore : 1111111 111 111 1 222222 1111111
lowQualScore : 3 1 1 44 3 1 1 3 999999 999999 0 3 7 4 3 1111111 1 8 3 1 111 1 1 1 1 5 000 5 5 9 5 0 888 222222 3 33 6666666 2 5 1 1
lowQualScore : . . . .. . . . . ...... ...... . . . . . ....... . . . . ... . . . . . ... . . . . . ... ...... . .. ....... . . . .
lowQualScore : 2 1 0 66 3 0 0 6 666666 666666 8 3 3 0 4 0000000 0 0 5 0 222 0 3 0 3 7 000 0 0 5 1 8 888 111111 4 88 2222222 5 0 0 0
consensus : NGCCAACACAGAGGTCCGGGTTTACGATATNT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACTTGNCANCACATAGAACCGTTTA-CA------GAGT------TTACGATATCTCGTGATAGTGAGCC-GTTCCCTGGT-TC-AGATCAAG---GGT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATNCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGCGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATANGTCT-A-AAATGAATTGTGATATAGGAGTATATGTTCNGGAATNGGCTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGTA-T-CTAATATATTTACAGCCAAGTTAATTATGAATGTATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAACAAAAATAACAAC---GCAGA--TA--CCGTCATTTC-------AAGCAAAACA-TGGACAANATATCAATTTATATACGTTTTCATAACACGCGGCAAAATGTACANCCAAGCTTAT
Reference ( family-9020 ) : NGCCAACACAGAGGTCCGGGTTTACGATATNT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACTTGNCANCACATAGAACCGTTTA-CA------GAGT------TTACGATATCTCGTGATAGTGAGCC-GTTCCCTGGT-TC-AGATCAAG---GGT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATNCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGCGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATANGTCT-A-AAATGAATTGTGATATAGGAGTATATGTTCNGGAATNGGCTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGTA-T-CTAATATATTTACAGCCAAGTTAATTATGAATGTATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAACAAAAATAACAAC---GCAGA--TA--CCGTCATTTC-------AAGCAAAACA-TGGACAANATATCAATTTATATACGTTTTCATAACACGCGGCAAAATGTACANCCAAGCTTAT
gi|1 : GCCAACACAGAGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------TA-T------TTACGATATCTCGTGACAGTGAACT-GTTCTCTGGT-TC-AAATCAAG---GGT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATACACAG-AGTCGTTTATACATTACCAAAATACTTCGACTTAAACAAGCGTCTCCTGGAATATTT-ACGAAATCCACTTACAGCTTTAGATACGTCT-A-AAATGAACTGTGATATAGGAGTATATGGTCAGGAATTGGCTATTTTATACAGAACATCTGCAGGGG-AACACCGCCTGCTACTTTATC---AATAATAATTATGTA-T-CTAATATATTTACAGCCAAGTTAATTATGAATATGTGTAAAACGTATTTGAAACAATAGAGCTAATTGTTAACAAAAATAACAAC---GCAGA--TA--CTGTCATTTC-------AAGGAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGCGACAAAATGTACAACCAAGCTTAT
gi|10 : cTAACAAAAACAACAACAACGAAGA--TATTCCGTCATTTC-------AAGCAAAACA-TGGACAAAATATTAATTTATATACGTTTTCATAACACGAGACAAAATGTACAACCAAGCTTAT
gi|11 : TAACAAAAATAACAAC---GCAGA--TA--CTGTCATTTC-------AAGGAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGCGACAAAATGTACAACCAAGCTTATtttacaacgcgatgtaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagttctgaacgatatgtatatacattttgctatgaaagtattagcagctagataaagccagagggtctcaaatagattaataatcaaatagt
gi|12 : GTCCGGGTTTACGATATCT--CGTGAAAGTGAGCCATTCCCTGGGTC-GAACTTGAGGACACATATAATTGTTTA-CA------GAGT------TTTCGATATGTCATGATAATGAGCC-GTTCttaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctgaacaggagttaagttctgaacgatatgtataaacattttgcaatgaaagtattagcagctagataaagccagggggcctcaaacagattaataatcaaacagt
gi|12 : aGAGTTTTCGATATGT--CATGATAATGAGCCGTTCGATGGGCC-TTACTTGACAATACATACAATTGTTGA-CA------GAGT------TTGCGATATTTCATAATGGTAAGCC-GTTCCCTGGG-CCTAGATTGAC---A---ACACATGGAACCGTTTACAGATgatgggccttacttgacaatacatacaattgttgacagagtttgcgatatttcataatggtaagccgttccctgggcctagattgacaacacatggaaccgtttacagatgtttcgataatgagccttttttctgatataaaatatatggtatacgcagaactgtttatggattctctgtaaacaacatagtccgagtcgttca
gi|12 : agtccgggtttacgatatctcgtgaaagtgagccattccctgggtcgaacttgaggacacatataattgtttacaGAGTTTGCGATATTT--CATAATGGTAAGCCGTTCCCTGGGCCTAGA-TTGACAACACATGGAACCGTTTA-CA--------------------GATGTTTC--GATAATGAGCCTTTTTTCTGATATA-AAATATAT---GGT-ATACGCAGAACTGTTTATGGATTCTCTGTAAACAACATAGTCCGAGTCGTTCAgtttcgataatgagccttttttctgatataaaatatatggtatacgcagaactgtttatggattctctgtaaacaacatagtccgagtcgttca
gi|13 : agtccgggtttacgatatctcgtgaaagtgagccattccctgggtcgaacttgaggacacatataattgtttacagagttttcgatatgtcatgataatgagccgttcgatgggccttacttgacaatacatacaattgttgacaAAAACCTTTTGAATTAAACACTCGTCTCCTAGAATGTTTTACGAAATCCACTTACAGCTTTAAATAAGTCTTA-AACTGAATTGTAATATAAAAATATATGTTCTGGACTAGGCCATCTGATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATCAATAATAATAATTATGTATT-CTAATG-A---------AAGTTAATTATGAACGAATGTAAAACGTATTTGAAACAAAAGAGCTATTTGTTAATCAAAATAACAAC---GCAGATTTT--CCGATATTTC-------AAGCAAAACA-TGGACAATATATC
gi|2 : GCCAAAACAGCGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTTGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------GAGT------TTACGATATCTCGTGACAGTGAGCT-GTTCTCTGGT-TC-AAATCAAG---TGT-ATACATAGAACCGTTAACGGATTCTCTGTTTACAAAATATTCCGAGTCGTTCACTTAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTTCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTTAACAAGCGTCTCCTGGAATATTTAACGAAATCCGCTAACAGCTTTAGATACGTCT-T-AAATGGATTGTGATATAGGAGTATATGTTCAGGAATTGGCTATTTTATACAGAACGTCTGCAGGGGAAACACCACCTGCTACTTTATC---AATCATAATTATGTA-T-CTAATATATTTACAGCCAAGTAAATTATGGATATATGCAGAACTTATTTGAAACAATAGAGCTATTTGTTAAca
gi|3 : gcaTGTTCTGGACTAGGCCATCTGATACAGAACGTCTGCAGGGG-AACACCACTTGCTACTTTATC---AATAATAATTATGTATT-CTAATG-A---------AAGTTAATTATGAACGAATGTAAAACGTATTTGAAACAAAAGAGCTATTTGTTAATCAAAATAACAAC---GCAGATTTT--CCGATATTTC-------AAGCAAAACA-AGGACAATATATCAATTTATACAAATTTCCATAGCACACGGCAAAATGTACATCCAAGCTCAT
gi|4 : GCCAACACAGAGTTTTGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTTGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------GAGT------TTACGGTAAATTGTGATAGTGAGCT-GTTCTCTGGT-TC-AAATCAAG---GGT-ATACACAGAACCGTTTACGGATTAT--GTTAACAACATATTCCGAGTCGTTCACTAAATGGCAATAAACATTATCACAGGAACAGTTTAAGTTCCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGTGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATGAGTCT-A-AAATGAAGTGTGATATAGGAGTATATGTTCAGGAATTGACTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTCTATC---AATCATAATTATGTA-T-CTTATATATTTACAGCCAAGTAAATTATGAATATATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAAcgcgctgtatataaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttagtgctgaaatatatgtaaatacattttgtaatgaaagtatatgcagctagataaagctagagggccttaaacaggttaataataaaatag
gi|5 : GTTCGAATTAGCGATATCT--CATGATATTGAGCCATTCCATGGTTT-TGACTT
gi|5 : a------GAAT------TAGCGATATCTCATGATATTGAGCC-ATTCCATGGT-Taatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacagagtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcGTCCGAGTTAACGGTATGTTTCGTGATATTGAGTC-TTTTTTGAGCC-CAACGTGTTATGACA--GAACAGTTTA-CACAGTCCGAGT------CAACGGTGTTTTATGATAGTGAACC-TTTGCCT--------GAACGAACTTGATAATACATAGAACAGTTttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacagagtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacataACACAG---TCCGAGTCAACGGTGTTT--TATGATAGTGAACCTTTGCCTGAAC--GAACTTGATAATACATAGAACAGTTAAACA------GAGTCCGGGTTTGCGATATCTCGTGATAGTGAGCC-GTTCCCTGGG-CC-GGA-CAAG---ACA-AAACATATAACCGTTTACAGAaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacagagtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttACAGAG-TCCGGGTTTGCGATATCT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACAAGACAAAACATATAACCGTTTA-CA------GAGT------TTACGATATCTCGTGATAGTAAGCC-GTTCCCTGGG-CC-GGA-CAAG---ACA-AAACATATAACCGTTTACAGgtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaGAGTTTACGATATCT--CGTGATAGTAAGCCGTTCCCTGGGCC-GGACAAGACAAAACATATAACCGTTTA-CA------GCGT------TTACGATATCTCATGACAGTGAGCT-GTTCTCTGGTGTC-AGATCAAG---GGT-ATAAGCTGAACCGTTTATGGATTCTCTGTTAACAGCGTATTCTGAGTCcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|6 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacaCAACACAGAGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGCACCGTTTA-CA------GAGT------TTACGATATCTCGTGACAGTGAGCT-GTTCTCTGGT-TC-AAATCAAG---GTT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAAAAGCAATAAACATTATCACAAGAACAGTTATAGTTCCAAAATAACAGTATACACAG-AGTCGTTTATACATTACCAAAACACTTCGACTAAAACAAGCGTCTCCTGGAATA-TTTACGAAATCCACTTACAGC-TTAAATACGTCT-G-AAATGAACTGTGATATAGGAGTATATGGTCAGGAATTGGCTATTTTATACATAACGTCCGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGTA-T-TTAAAATATTTACATCCAAGTTAATTATGAATATATGTAAAACGTATTTGAAACAATAGAGCTACTTGTTAA
gi|7 : TGTA-TTCTAATAGATTTACAGCCAAGTTAATTATGAATGTATATAAAACG-ATTTGAAACAATAAAGCTATTAGTTAACAAAAATAACAAC---GCAGA--T---------TTTCTGGGGGGGGGGGGAATATTGGAAAATATATCAA---------GTTTTCATCACAAGCGGTAAAATGTACATCCGAGCTAAT
gi|8 : GTTCCAAAATAACAGTATTCTCAGTAGT-------ACGTTACCAAAACCCTTTGACTGAAACAATCGTCTCCTAGAATATTTTACGAAATCCACTTACAGCTTTATACAATTCT-ACAAATAAATTGTAATAGATGAACATACGTTCTGGACAAGGTTGTTTGATACAGGACA-----------AACACCACCTGCTTCTGTATC---AATGGTAATGATGTAAT-CTAATAAACTCACAGTCAAGTAAATTCTGGATGTATGTAAAACGTATTTGAAACAACAAAACTATTTGATAACAAAACTAGCAAC---GTA-A--TA--T---------------------AAAC---GGGCAATATATCAGTTTCTACATATTTTCATTACACGCAGCAGAAAGTACATCCAAACTtttacattgtaaataaaattgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgaacacgagtttagttctgaacgatatgtatattttgcaatgaaagtatttgcagctagataaagccagagggcctcgaacagattaataataaaacagt
gi|9 : TAACAAAAACAACAAA---GCAGA--TATTCCGTCATTTC-------AAGCAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGATACAAAATGTACAACCAAGCTTATaactttaccatgtgttgaaaacaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATGAAAGTTTTTGCAGCTACATAAAGACAGAGGGCCACAAACAGATCAATAATAAAATAAT
Unaligned ( gi|15 ): CTGTTGGAAGTGGGAGTGTGCTGATATGTGGTCATAGCTATTGTAATCGCTCC
Unaligned ( gi|16 ): GATAAAGCCAGAGGGCCTCGAACAGACTAATAATAAAACAGT
Unaligned ( gi|17 ): AACAGACTCGTATCTACAAATGAATCCGAGCGATGGTAGTG
Alignments
lowQualScore : 1111111 111 111 1 222222 1111111
lowQualScore : 3 1 1 44 3 1 1 3 999999 999999 0 3 7 4 3 1111111 1 8 3 1 111 1 1 1 1 5 000 5 5 9 5 0 888 222222 3 33 6666666 2 5 1 1
lowQualScore : . . . .. . . . . ...... ...... . . . . . ....... . . . . ... . . . . . ... . . . . . ... ...... . .. ....... . . . .
lowQualScore : 2 1 0 66 3 0 0 6 666666 666666 8 3 3 0 4 0000000 0 0 5 0 222 0 3 0 3 7 000 0 0 5 1 8 888 111111 4 88 2222222 5 0 0 0
consensus : NGCCAACACAGAGGTCCGGGTTTACGATATNT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACTTGNCANCACATAGAACCGTTTA-CA------GAGT------TTACGATATCTCGTGATAGTGAGCC-GTTCCCTGGT-TC-AGATCAAG---GGT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATNCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGCGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATANGTCT-A-AAATGAATTGTGATATAGGAGTATATGTTCNGGAATNGGCTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGTA-T-CTAATATATTTACAGCCAAGTTAATTATGAATGTATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAACAAAAATAACAAC---GCAGA--TA--CCGTCATTTC-------AAGCAAAACA-TGGACAANATATCAATTTATATACGTTTTCATAACACGCGGCAAAATGTACANCCAAGCTTAT
Reference ( family-9020 ) : NGCCAACACAGAGGTCCGGGTTTACGATATNT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACTTGNCANCACATAGAACCGTTTA-CA------GAGT------TTACGATATCTCGTGATAGTGAGCC-GTTCCCTGGT-TC-AGATCAAG---GGT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATNCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGCGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATANGTCT-A-AAATGAATTGTGATATAGGAGTATATGTTCNGGAATNGGCTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGTA-T-CTAATATATTTACAGCCAAGTTAATTATGAATGTATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAACAAAAATAACAAC---GCAGA--TA--CCGTCATTTC-------AAGCAAAACA-TGGACAANATATCAATTTATATACGTTTTCATAACACGCGGCAAAATGTACANCCAAGCTTAT
gi|1 : GCCAACACAGAGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------TA-T------TTACGATATCTCGTGACAGTGAACT-GTTCTCTGGT-TC-AAATCAAG---GGT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATACACAG-AGTCGTTTATACATTACCAAAATACTTCGACTTAAACAAGCGTCTCCTGGAATATTT-ACGAAATCCACTTACAGCTTTAGATACGTCT-A-AAATGAACTGTGATATAGGAGTATATGGTCAGGAATTGGCTATTTTATACAGAACATCTGCAGGGG-AACACCGCCTGCTACTTTATC---AATAATAATTATGTA-T-CTAATATATTTACAGCCAAGTTAATTATGAATATGTGTAAAACGTATTTGAAACAATAGAGCTAATTGTTAACAAAAATAACAAC---GCAGA--TA--CTGTCATTTC-------AAGGAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGCGACAAAATGTACAACCAAGCTTAT
gi|10 : cTAACAAAAACAACAACAACGAAGA--TATTCCGTCATTTC-------AAGCAAAACA-TGGACAAAATATTAATTTATATACGTTTTCATAACACGAGACAAAATGTACAACCAAGCTTAT
gi|11 : TAACAAAAATAACAAC---GCAGA--TA--CTGTCATTTC-------AAGGAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGCGACAAAATGTACAACCAAGCTTATtttacaacgcgatgtaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagttctgaacgatatgtatatacattttgctatgaaagtattagcagctagataaagccagagggtctcaaatagattaataatcaaatagt
gi|12 : GTCCGGGTTTACGATATCT--CGTGAAAGTGAGCCATTCCCTGGGTC-GAACTTGAGGACACATATAATTGTTTA-CA------GAGT------TTTCGATATGTCATGATAATGAGCC-GTTCttaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctgaacaggagttaagttctgaacgatatgtataaacattttgcaatgaaagtattagcagctagataaagccagggggcctcaaacagattaataatcaaacagt
gi|12 : aGAGTTTTCGATATGT--CATGATAATGAGCCGTTCGATGGGCC-TTACTTGACAATACATACAATTGTTGA-CA------GAGT------TTGCGATATTTCATAATGGTAAGCC-GTTCCCTGGG-CCTAGATTGAC---A---ACACATGGAACCGTTTACAGATgatgggccttacttgacaatacatacaattgttgacagagtttgcgatatttcataatggtaagccgttccctgggcctagattgacaacacatggaaccgtttacagatgtttcgataatgagccttttttctgatataaaatatatggtatacgcagaactgtttatggattctctgtaaacaacatagtccgagtcgttca
gi|12 : agtccgggtttacgatatctcgtgaaagtgagccattccctgggtcgaacttgaggacacatataattgtttacaGAGTTTGCGATATTT--CATAATGGTAAGCCGTTCCCTGGGCCTAGA-TTGACAACACATGGAACCGTTTA-CA--------------------GATGTTTC--GATAATGAGCCTTTTTTCTGATATA-AAATATAT---GGT-ATACGCAGAACTGTTTATGGATTCTCTGTAAACAACATAGTCCGAGTCGTTCAgtttcgataatgagccttttttctgatataaaatatatggtatacgcagaactgtttatggattctctgtaaacaacatagtccgagtcgttca
gi|13 : agtccgggtttacgatatctcgtgaaagtgagccattccctgggtcgaacttgaggacacatataattgtttacagagttttcgatatgtcatgataatgagccgttcgatgggccttacttgacaatacatacaattgttgacaAAAACCTTTTGAATTAAACACTCGTCTCCTAGAATGTTTTACGAAATCCACTTACAGCTTTAAATAAGTCTTA-AACTGAATTGTAATATAAAAATATATGTTCTGGACTAGGCCATCTGATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATCAATAATAATAATTATGTATT-CTAATG-A---------AAGTTAATTATGAACGAATGTAAAACGTATTTGAAACAAAAGAGCTATTTGTTAATCAAAATAACAAC---GCAGATTTT--CCGATATTTC-------AAGCAAAACA-TGGACAATATATC
gi|2 : GCCAAAACAGCGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTTGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------GAGT------TTACGATATCTCGTGACAGTGAGCT-GTTCTCTGGT-TC-AAATCAAG---TGT-ATACATAGAACCGTTAACGGATTCTCTGTTTACAAAATATTCCGAGTCGTTCACTTAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTTCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTTAACAAGCGTCTCCTGGAATATTTAACGAAATCCGCTAACAGCTTTAGATACGTCT-T-AAATGGATTGTGATATAGGAGTATATGTTCAGGAATTGGCTATTTTATACAGAACGTCTGCAGGGGAAACACCACCTGCTACTTTATC---AATCATAATTATGTA-T-CTAATATATTTACAGCCAAGTAAATTATGGATATATGCAGAACTTATTTGAAACAATAGAGCTATTTGTTAAca
gi|3 : gcaTGTTCTGGACTAGGCCATCTGATACAGAACGTCTGCAGGGG-AACACCACTTGCTACTTTATC---AATAATAATTATGTATT-CTAATG-A---------AAGTTAATTATGAACGAATGTAAAACGTATTTGAAACAAAAGAGCTATTTGTTAATCAAAATAACAAC---GCAGATTTT--CCGATATTTC-------AAGCAAAACA-AGGACAATATATCAATTTATACAAATTTCCATAGCACACGGCAAAATGTACATCCAAGCTCAT
gi|4 : GCCAACACAGAGTTTTGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTTGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------GAGT------TTACGGTAAATTGTGATAGTGAGCT-GTTCTCTGGT-TC-AAATCAAG---GGT-ATACACAGAACCGTTTACGGATTAT--GTTAACAACATATTCCGAGTCGTTCACTAAATGGCAATAAACATTATCACAGGAACAGTTTAAGTTCCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGTGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATGAGTCT-A-AAATGAAGTGTGATATAGGAGTATATGTTCAGGAATTGACTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTCTATC---AATCATAATTATGTA-T-CTTATATATTTACAGCCAAGTAAATTATGAATATATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAAcgcgctgtatataaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttagtgctgaaatatatgtaaatacattttgtaatgaaagtatatgcagctagataaagctagagggccttaaacaggttaataataaaatag
gi|5 : GTTCGAATTAGCGATATCT--CATGATATTGAGCCATTCCATGGTTT-TGACTT
gi|5 : a------GAAT------TAGCGATATCTCATGATATTGAGCC-ATTCCATGGT-Taatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacagagtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcGTCCGAGTTAACGGTATGTTTCGTGATATTGAGTC-TTTTTTGAGCC-CAACGTGTTATGACA--GAACAGTTTA-CACAGTCCGAGT------CAACGGTGTTTTATGATAGTGAACC-TTTGCCT--------GAACGAACTTGATAATACATAGAACAGTTttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacagagtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacataACACAG---TCCGAGTCAACGGTGTTT--TATGATAGTGAACCTTTGCCTGAAC--GAACTTGATAATACATAGAACAGTTAAACA------GAGTCCGGGTTTGCGATATCTCGTGATAGTGAGCC-GTTCCCTGGG-CC-GGA-CAAG---ACA-AAACATATAACCGTTTACAGAaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacagagtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttACAGAG-TCCGGGTTTGCGATATCT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACAAGACAAAACATATAACCGTTTA-CA------GAGT------TTACGATATCTCGTGATAGTAAGCC-GTTCCCTGGG-CC-GGA-CAAG---ACA-AAACATATAACCGTTTACAGgtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaGAGTTTACGATATCT--CGTGATAGTAAGCCGTTCCCTGGGCC-GGACAAGACAAAACATATAACCGTTTA-CA------GCGT------TTACGATATCTCATGACAGTGAGCT-GTTCTCTGGTGTC-AGATCAAG---GGT-ATAAGCTGAACCGTTTATGGATTCTCTGTTAACAGCGTATTCTGAGTCcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|6 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacaCAACACAGAGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGCACCGTTTA-CA------GAGT------TTACGATATCTCGTGACAGTGAGCT-GTTCTCTGGT-TC-AAATCAAG---GTT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAAAAGCAATAAACATTATCACAAGAACAGTTATAGTTCCAAAATAACAGTATACACAG-AGTCGTTTATACATTACCAAAACACTTCGACTAAAACAAGCGTCTCCTGGAATA-TTTACGAAATCCACTTACAGC-TTAAATACGTCT-G-AAATGAACTGTGATATAGGAGTATATGGTCAGGAATTGGCTATTTTATACATAACGTCCGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGTA-T-TTAAAATATTTACATCCAAGTTAATTATGAATATATGTAAAACGTATTTGAAACAATAGAGCTACTTGTTAA
gi|7 : TGTA-TTCTAATAGATTTACAGCCAAGTTAATTATGAATGTATATAAAACG-ATTTGAAACAATAAAGCTATTAGTTAACAAAAATAACAAC---GCAGA--T---------TTTCTGGGGGGGGGGGGAATATTGGAAAATATATCAA---------GTTTTCATCACAAGCGGTAAAATGTACATCCGAGCTAAT
gi|8 : GTTCCAAAATAACAGTATTCTCAGTAGT-------ACGTTACCAAAACCCTTTGACTGAAACAATCGTCTCCTAGAATATTTTACGAAATCCACTTACAGCTTTATACAATTCT-ACAAATAAATTGTAATAGATGAACATACGTTCTGGACAAGGTTGTTTGATACAGGACA-----------AACACCACCTGCTTCTGTATC---AATGGTAATGATGTAAT-CTAATAAACTCACAGTCAAGTAAATTCTGGATGTATGTAAAACGTATTTGAAACAACAAAACTATTTGATAACAAAACTAGCAAC---GTA-A--TA--T---------------------AAAC---GGGCAATATATCAGTTTCTACATATTTTCATTACACGCAGCAGAAAGTACATCCAAACTtttacattgtaaataaaattgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgaacacgagtttagttctgaacgatatgtatattttgcaatgaaagtatttgcagctagataaagccagagggcctcgaacagattaataataaaacagt
gi|9 : TAACAAAAACAACAAA---GCAGA--TATTCCGTCATTTC-------AAGCAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGATACAAAATGTACAACCAAGCTTATaactttaccatgtgttgaaaacaaa
blockSeqs : C G C TT T A A A CAGTCC CCGGGT T A T T CTTGATA C T T A TA T C A G A AAT T T T T AAC TATT C TC TGGGGGG C T A A
blockSeqs : A G G . . A A . . . . G . T GGT C . A C AC A A T T . . T . T T . TTTT T TC . G . A A
blockSeqs : A T T . . A A . . . . . . T TGT A . T A T T C A G . . A . T T . TTTT C AT . C . T T
blockSeqs : A G A . . C T . . . . . . T GGT T . T C A A A T T . . . . G T . TATT C AT . C . T T
blockSeqs : . G A . . C T . . . . . . A ACA T A G A A T T . . . . A C . TA C TC . G . T T
blockSeqs : G C . . T T . . . . . . T ACA T C A G . . . . . . . TA . . . C . T A
blockSeqs : . G . . A A . . . . . . T GGT . . . . . T . . . . . A
blockSeqs : . T . . A A . . . . . . . GTT
blockSeqs : C . . A A . . . . . . . A
blockSeqs : C . . C T . . . . .
blockSeqs : A . . . . .
blockSeqCons : TNTT**
originalCons : NGCCAACACAGAGGTCCGGGTTTACGATATNT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACTTGNCANCACATAGAACCGTTTA-CA------GAGT------TTACGATATCTCGTGATAGTGAGCC-GTTCCCTGGT-TC-AGATCAAG---GGT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATNCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGCGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATANGTCT-A-AAATGAATTGTGATATAGGAGTATATGTTCNGGAATNGGCTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGTA-T-CTAATATATTTACAGCCAAGTTAATTATGAATGTATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAACAAAAATAACAAC---GCAGA--TA--CCGTCATTTC-------AAGCAAAACA-TGGACAANATATCAATTTATATACGTTTTCATAACACGCGGCAAAATGTACANCCAAGCTTAT
finalCons : NGCCAACACAGAGGTCCGGGTTTACGATATNT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACTTGNCANCACATAGAACCGTTTA-CA------GAGT------TTACGATATCTCGTGATAGTGAGCC-GTTCCCTGGT-TC-AGATCAAG---GGT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATNCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGCGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATANGTCT-A-AAATGAATTGTGATATAGGAGTATATGTTCNGGAATNGGCTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATC---AATAATAATTATGTA-T-CTAATATATTTACAGCCAAGTTAATTATGAATGTATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAACAAAAATAACAAC---GCAGATNTT--CCGTCATTTC-------AAGCAAAACA-TGGACAANATATCAATTTATATACGTTTTCATAACACGCGGCAAAATGTACANCCAAGCTTAT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATGAAAGTTTTTGCAGCTACATAAAGACAGAGGGCCACAAACAGATCAATAATAAAATAAT
Unaligned ( gi|15 ): CTGTTGGAAGTGGGAGTGTGCTGATATGTGGTCATAGCTATTGTAATCGCTCC
Unaligned ( gi|16 ): GATAAAGCCAGAGGGCCTCGAACAGACTAATAATAAAACAGT
Unaligned ( gi|17 ): AACAGACTCGTATCTACAAATGAATCCGAGCGATGGTAGTG
Alignments
lowQualScore : 1111111 111 111 1
lowQualScore : 3 2 1 55 3 1 1 3 999999 999999 0 3 7 4 3 1111111 1 8 7 1 111 1 1 1 1 5 000 5 5 9 5 0 888 777 66 2 5 1 1
lowQualScore : . . . .. . . . . ...... ...... . . . . . ....... . . . . ... . . . . . ... . . . . . ... ... .. . . . .
lowQualScore : 2 5 0 00 6 0 0 6 666666 666666 8 3 3 0 4 0000000 0 0 3 0 222 0 3 0 3 7 000 0 0 5 6 8 888 444 99 5 0 0 0
consensus : NGCCAACACAGAGGTCCGGGTTTACGATATNT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACTTGNCANCACATAGAACCGTTTA-CA------GAGT------TTACGATATCTCGTGATAGTGAGCC-GTTCCCTGGT-TC-AGATCAAG---GGT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATNCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGCGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATANGTCT-A-AAATGAATTGTGATATAGGAGTATATGTTCNGGAATNGGCTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATCAATAATAAT---TATGTA-TTCTAATATATTTACAGCCAAGTTAATTATGAATGTATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAACAAAAATAACAAC---GCAGATATTCCGTCATTTCAAGCAAAACA-TGGACAANATATCAATTTATATACGTTTTCATAACACGCGGCAAAATGTACANCCAAGCTTAT
Reference ( family-9020 ) : NGCCAACACAGAGGTCCGGGTTTACGATATNT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACTTGNCANCACATAGAACCGTTTA-CA------GAGT------TTACGATATCTCGTGATAGTGAGCC-GTTCCCTGGT-TC-AGATCAAG---GGT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATNCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGCGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATANGTCT-A-AAATGAATTGTGATATAGGAGTATATGTTCNGGAATNGGCTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATCAATAATAAT---TATGTA-T-CTAATATATTTACAGCCAAGTTAATTATGAATGTATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAACAAAAATAACAAC---GCAGATNTTCCGTCATTTCAAGCAAAACA-TGGACAANATATCAATTTATATACGTTTTCATAACACGCGGCAAAATGTACANCCAAGCTTAT
gi|1 : GCCAACACAGAGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------TA-T------TTACGATATCTCGTGACAGTGAACT-GTTCTCTGGT-TC-AAATCAAG---GGT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTCCAAAATAACAGTATACACAG-AGTCGTTTATACATTACCAAAATACTTCGACTTAAACAAGCGTCTCCTGGAATA-TTTACGAAATCCACTTACAGCTTTAGATACGTCT-A-AAATGAACTGTGATATAGGAGTATATGGTCAGGAATTGGCTATTTTATACAGAACATCTGCAGGGG-AACACCGCCTGCTACTTTATCAATAATAAT---TATGTA-T-CTAATATATTTACAGCCAAGTTAATTATGAATATGTGTAAAACGTATTTGAAACAATAGAGCTAATTGTTAACAAAAATAACAAC---GCAGATA--CTGTCATTTCAAGGAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGCGACAAAATGTACAACCAAGCTTAT
gi|10 : cTAACAAAAACAACAACAACGAAGATATTCCGTCATTTCAAGCAAAACA-TGGACAAAATATTAATTTATATACGTTTTCATAACACGAGACAAAATGTACAACCAAGCTTAT
gi|11 : TAACAAAAATAACAAC---GCAGATA--CTGTCATTTCAAGGAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGCGACAAAATGTACAACCAAGCTTATtttacaacgcgatgtaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagttctgaacgatatgtatatacattttgctatgaaagtattagcagctagataaagccagagggtctcaaatagattaataatcaaatagt
gi|12 : GTCCGGGTTTACGATATCT--CGTGAAAGTGAGCCATTCCCTGGGTC-GAACTTGAGGACACATATAATTGTTTA-CA------GAGT------TTTCGATATGTCATGATAATGAGCC-GTTCttaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctgaacaggagttaagttctgaacgatatgtataaacattttgcaatgaaagtattagcagctagataaagccagggggcctcaaacagattaataatcaaacagt
gi|12 : aGAGTTTTCGATATGT--CATGATAATGAGCCGTTCGATGGGCC-TTACTTGACAATACATACAATTGTTGA-CA------GAGT------TTGCGATATTTCATAATGGTAAGCC-GTTCCCTGGG-CCTAGATTGAC---A---ACACATGGAACCGTTTACAGATgatgggccttacttgacaatacatacaattgttgacagagtttgcgatatttcataatggtaagccgttccctgggcctagattgacaacacatggaaccgtttacagatgtttcgataatgagccttttttctgatataaaatatatggtatacgcagaactgtttatggattctctgtaaacaacatagtccgagtcgttca
gi|12 : agtccgggtttacgatatctcgtgaaagtgagccattccctgggtcgaacttgaggacacatataattgtttacaGAGTTTGCGATATTT--CATAATGGTAAGCCGTTCCCTGGGCCTAGA-TTGACAACACATGGAACCGTTTA-CA--------------------GATGTTTC--GATAATGAGCCTTTTTTCTGATATA-AAATATAT---GGT-ATACGCAGAACTGTTTATGGATTCTCTGTAAACAACATAGTCCGAGTCGTTCAgtttcgataatgagccttttttctgatataaaatatatggtatacgcagaactgtttatggattctctgtaaacaacatagtccgagtcgttca
gi|13 : agtccgggtttacgatatctcgtgaaagtgagccattccctgggtcgaacttgaggacacatataattgtttacagagttttcgatatgtcatgataatgagccgttcgatgggccttacttgacaatacatacaattgttgacaAAAACCTTTTGAATTAAACACTCGTCTCCTAGAATGTTTTACGAAATCCACTTACAGCTTTAAATAAGTCTTA-AACTGAATTGTAATATAAAAATATATGTTCTGGACTAGGCCATCTGATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTTTATCAATAATAATAATTATGTA-TTCTAATG-------A---AAGTTAATTATGAACGAATGTAAAACGTATTTGAAACAAAAGAGCTATTTGTTAATCAAAATAACAAC---GCAGATTTTCCGATATTTCAAGCAAAACA-TGGACAATATATC
gi|2 : GCCAAAACAGCGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTTGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------GAGT------TTACGATATCTCGTGACAGTGAGCT-GTTCTCTGGT-TC-AAATCAAG---TGT-ATACATAGAACCGTTAACGGATTCTCTGTTTACAAAATATTCCGAGTCGTTCACTTAATAGCAATAAACATTATCACAAGAACAGTTAAAGTTTCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTTAACAAGCGTCTCCTGGAATATTTAACGAAATCCGCTAACAGCTTTAGATACGTCT-T-AAATGGATTGTGATATAGGAGTATATGTTCAGGAATTGGCTATTTTATACAGAACGTCTGCAGGGGAAACACCACCTGCTACTTTATCAATCATAAT---TATGTA-T-CTAATATATTTACAGCCAAGTAAATTATGGATATATGCAGAACTTATTTGAAACAATAGAGCTATTTGTTAAca
gi|3 : gcaTGTTCTGGACTAGGCCATCTGATACAGAACGTCTGCAGGGG-AACACCACTTGCTACTTTATCAATAATAAT---TATGTA-TTCTAATG-------A---AAGTTAATTATGAACGAATGTAAAACGTATTTGAAACAAAAGAGCTATTTGTTAATCAAAATAACAAC---GCAGATTTTCCGATATTTCAAGCAAAACA-AGGACAATATATCAATTTATACAAATTTCCATAGCACACGGCAAAATGTACATCCAAGCTCAT
gi|4 : GCCAACACAGAGTTTTGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTTGGCC-GGACTTGCCATCACATAGAACCGTTTA-CA------GAGT------TTACGGTAAATTGTGATAGTGAGCT-GTTCTCTGGT-TC-AAATCAAG---GGT-ATACACAGAACCGTTTACGGATTAT--GTTAACAACATATTCCGAGTCGTTCACTAAATGGCAATAAACATTATCACAGGAACAGTTTAAGTTCCAAAATAACAGTATCCACAG-AGTCGTTTATACATTACCAAAACACTTCGACTTAAACAAGTGTCTCCTGGAATATTTTACGAAATCCACTTACAGCTTTAGATGAGTCT-A-AAATGAAGTGTGATATAGGAGTATATGTTCAGGAATTGACTATTTTATACAGAACGTCTGCAGGGG-AACACCACCTGCTACTCTATCAATCATAAT---TATGTA-T-CTTATATATTTACAGCCAAGTAAATTATGAATATATGTAAAACGTATTTGAAACAATAGAGCTATTTGTTAAcgcgctgtatataaaattgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttagtgctgaaatatatgtaaatacattttgtaatgaaagtatatgcagctagataaagctagagggccttaaacaggttaataataaaatag
gi|5 : ------GAAT------TAGCGATATCTCATGATATTGAGCC-ATTCCATGGT-T
gi|5 : agttcGTCCGAGTTAACGGTATGTTTCGTGATATTGAGTC-TTTTTTGAGCC-CAACGTGTTATGACA--GAACAGTTTA-CACAGTCCGAGT------CAACGGTGTTTTATGATAGTGAACC-TTTGCCT--------GAACGAACTTGATAATACATAGAACAGTTttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacagagtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacataACACAG---TCCGAGTCAACGGTGTTT--TATGATAGTGAACCTTTGCCTGAAC--GAACTTGATAATACATAGAACAGTTAAACA------GAGTCCGGGTTTGCGATATCTCGTGATAGTGAGCC-GTTCCCTGGG-CC-GGA-CAAG---ACA-AAACATATAACCGTTTACAGAaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacagagtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttACAGAG-TCCGGGTTTGCGATATCT--CGTGATAGTGAGCCGTTCCCTGGGCC-GGACAAGACAAAACATATAACCGTTTA-CA------GAGT------TTACGATATCTCGTGATAGTAAGCC-GTTCCCTGGG-CC-GGA-CAAG---ACA-AAACATATAACCGTTTACAGgtttacgatatctcgtgatagtaagccgttccctgggccggacaagacaaaacatataaccgtttacagcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|5 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaGAGTTTACGATATCT--CGTGATAGTAAGCCGTTCCCTGGGCC-GGACAAGACAAAACATATAACCGTTTA-CA------GCGT------TTACGATATCTCATGACAGTGAGCT-GTTCTCTGGTGTC-AGATCAAG---GGT-ATAAGCTGAACCGTTTATGGATTCTCTGTTAACAGCGTATTCTGAGTCcgtttacgatatctcatgacagtgagctgttctctggtgtcagatcaagggtataagctgaaccgtttatggattctctgttaacagcgtattctgagtc
gi|6 : agttcgaattagcgatatctcatgatattgagccattccatggttttgacttaatatatatatataatacatataaacgaagataggcacgggtttatatcgctcctgctttgtacatagtccgagttaacggtatgtttcgtgatattgagtcttttttgagcccaacgtgttatgacagaacagtttacacagtccgagtcaacggtgttttatgatagtgaacctttgcctgaacgaacttgataatacatagaacagttaaacagagtccgggtttgcgatatctcgtgatagtgagccgttccctgggccggacaagacaaaacatataaccgtttacaCAACACAGAGGTTCGGGTTTACGATATAT--CGTGATAGTGAGTCGTTCCCTGGGCC-GGACTTGCCATCACATAGCACCGTTTA-CA------GAGT------TTACGATATCTCGTGACAGTGAGCT-GTTCTCTGGT-TC-AAATCAAG---GTT-ATACACAGAACCGTTTACGGATTCTCTGTTAACAACATATTCCGAGTCGTTCACTAAAAAGCAATAAACATTATCACAAGAACAGTTATAGTTCCAAAATAACAGTATACACAG-AGTCGTTTATACATTACCAAAACACTTCGACTAAAACAAGCGTCTCCTGGAATA-TTTACGAAATCCACTTACAGC-TTAAATACGTCT-G-AAATGAACTGTGATATAGGAGTATATGGTCAGGAATTGGCTATTTTATACATAACGTCCGCAGGGG-AACACCACCTGCTACTTTATCAATAATAAT---TATGTA-T-TTAAAATATTTACATCCAAGTTAATTATGAATATATGTAAAACGTATTTGAAACAATAGAGCTACTTGTTAA
gi|7 : TGTA-TTCTAATAGATTTACAGCCAAGTTAATTATGAATGTATATAAAACG-ATTTGAAACAATAAAGCTATTAGTTAACAAAAATAACAAC---GCAGATTTTCTG--GGGGGGGGGGGAATATTGGAAAATATATCAA---------GTTTTCATCACAAGCGGTAAAATGTACATCCGAGCTAAT
gi|8 : GTTCCAAAATAACAGTATTCTCAGTAGT-------ACGTTACCAAAACCCTTTGACTGAAACAATCGTCTCCTAGAATATTTTACGAAATCCACTTACAGCTTTATACAATTCT-ACAAATAAATTGTAATAGATGAACATACGTTCTGGACAAGGTTGTTTGATACAGGACA-----------AACACCACCTGCTTCTGTATCAATGGTAAT---GATGTAAT-CTAATAAACTCACAGTCAAGTAAATTCTGGATGTATGTAAAACGTATTTGAAACAACAAAACTATTTGATAACAAAACTAGCAAC---GTA-ATAT----------------AAAC---GGGCAATATATCAGTTTCTACATATTTTCATTACACGCAGCAGAAAGTACATCCAAACTtttacattgtaaataaaattgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgaacacgagtttagttctgaacgatatgtatattttgcaatgaaagtatttgcagctagataaagccagagggcctcgaacagattaataataaaacagt
gi|9 : TAACAAAAACAACAAA---GCAGATATTCCGTCATTTCAAGCAAAACA-TGGACAAAATATCAATTTATATACGTTTTCATAACACGATACAAAATGTACAACCAAGCTTATaactttaccatgtgttgaaaacaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATGAAAGTTTTTGCAGCTACATAAAGACAGAGGGCCACAAACAGATCAATAATAAAATAAT
Unaligned ( gi|15 ): CTGTTGGAAGTGGGAGTGTGCTGATATGTGGTCATAGCTATTGTAATCGCTCC
Unaligned ( gi|16 ): GATAAAGCCAGAGGGCCTCGAACAGACTAATAATAAAACAGT
Unaligned ( gi|17 ): AACAGACTCGTATCTACAAATGAATCCGAGCGATGGTAGTG