lowQualScore : 111111111111111111111111111111111 111111111111111111111
lowQualScore : 1 1 3333 33333 1 1 1 666666666666666666666666666666666 1 11 2222 4444444444444444444444444444 33333333333333 111 2222222 1 1 111111111111111111111 66666666666666666666666666 1111 111111111 1111 11 33 1 1
lowQualScore : 7 6 0 3333 6 3 88888 0 6 6 6 0 555555555555555555555555555555555 3 3 4 2 88 3333 666 555 3 6 8 3 6666666666666666666666666666 2 3 55 2 99 777 66666666666666 88 4 5 4 777 444 777 777 4444444 7 33 2 333 1 1 3 6 4 666 22 0 00 111111111111111111111 1 55 3 3 8888 55 4 44444444444444444444444444 4 0000 44 999999999 0000 11 99 4 5 1
lowQualScore : . . . .... . . ..... . . . . . ................................. . . . . .. .... ... ... . . . . ............................ . . .. . .. ... .............. .. . . . ... ... ... ... ....... . .. . ... . . . . . ... .. . .. ..................... . .. . . .... .. . .......................... . .... .. ......... .... .. .. . . .
lowQualScore : 0 7 0 8888 5 2 00000 0 8 0 0 0 444444444444444444444444444444444 7 7 4 2 11 5555 444 444 7 7 8 3 1111111111111111111111111111 5 6 00 0 55 000 44444444444444 11 0 4 0 555 111 000 000 9999999 0 00 4 444 5 0 0 7 7 444 55 8 99 111111111111111111111 6 55 6 6 5555 00 3 77777777777777777777777777 8 6666 00 666666666 8888 00 00 0 0 5
consensus : NTTGCTATGAGCGAG-TT--T-ATTTTCAATATA----TTTTC-TGTTACCATGGAAACA-AATAGCC-AAA-TT---AAA--TTCNCC-TTA-TGTTTCCGGAGCA-CAACTNCAAAACNNT---TC---AAGGTAACTTCACGAAACTTTGTACACATGTCAAC-CTNGTGGT---CTAGT-----AGTGC---CTTTCGC-TA--TGAGGGAG--T---TTTCATTTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-TAGCCA---AAA---TT---ACAAAATTCNCCGTTTCCGGAGCA-CAA-C-TCCAAAACTGTTCANGGTAACTTCATGA---AACTTTGTATACATGTCAACC---T--GGT-TG--A--TGTAGT--AGTGC-CTTTCGC-TATGAG-GGAG--TTTTCAT--------TT-------------T--GTTACCA----TCGAAAC--A--T---AG-CA-AAA--ACATAAGNTGTCNCT
Reference ( gi|4 ) : ATTGCAATGAGGGAG-TT--A-ATTTTCAATATG----TTTTC-TGTTGCTATGAAAACA-AATTGCC-AAA-TT---GAA--TTTTTTTTTA-TGTTTCCGGTGTA-CAACCACAAAGCAAT---TC---AAGGTAACTTCACGGAACTCTGTACACATGTCAAC-CTGGAGGC---CTAGT-----AATGC--GTTTTTGC-TA--TGAGGGAG--T---TTTTAATGTCAACAT--TTTTTTTC-TGTTACCATGAAAAC-A-A-TAGCCA---AAA---TG---ACAAAATTCACCGTTTCCGGAGCA-CAA-C-TCCAAAATTGTTCAAGGTAACATCACGA---AACTTTGTTTACATGTCAACC--ATG-GGT-TG--AGTTGTAGT--AGTGC-CTTTTGC-TATGAG-GGAG--TTTTCAT--------TT-------------T--GTTACCA----TCAAAAC--A--T---AG-TA-AAA--ACAAGAAATGTCACT
gi|1 : TTGCTGTGAGGGAAATT--T-TTTTTTAGTAT-----TTTTCATATT-CCACGGAAACATGA--GCC-AAAATT---AAAAGTTCTCCATTA------CAGGAGCA-TA-CTTCAAA--AATCGTTC---AAGATAATTTAATGA------GTGTACATGTCAAC-CATGTGGT---CTTAT-----AGTAC---CTTTCAC-TA--TGAGAGAG--T---TTTCATTTTCAGTA----TTTGTTC-TGTTACCATGGAAAC-A-GTTAGCCA---AAAATGTG----------TCTCCCTCTCTGCTGTA-CAA-C-TCCAA
gi|6 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattTTGCTATGAGTGAG-TTTTA-ATTTTCAAT-TA----TTTTC-TGTTTCCATGGAAACA-AATAGCCAAAA-TTACAAAA--TTCGCTT------TTTCCAGAGTA-CAACT-CGAAACAGT---AC---ATGGTATTTCCACAAAACTTTCCATACATG-CTAC-CTATTGAT---CTGGTAATTAAATGC---CTTTCACTTA--T-AGGGAG--T---TTcccttaagtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|3 : ttcttgaatacaattttaaactgttcagcttcatgtaactttgtattcatgtcaacctagttgtgtatcagtaccagTTGCTATGATCAAG-TT--TTATTTT--ATATTATTTTTTTC-TATTACCGTGGAAACA-AA----------------------------TA-T----CCAGAGCA-CCACTCCAAAACTGT---TC---AAGGTAACTTCATGAAACTTTGTAAACATGTCAAC-CTAGTGGC---CTAGcc
gi|2 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgcctt-TT--C-ATTTTCAATATA----TTTTC-TGGTACCATGGAAACA-AATAGC--AAA-------AA--TTACT----A-AATTCTC-----A-TAACTTTAAAACTGT---TC---AAGATAGTTTCGTGAATATTTGTATACATGTCAGT-CTAGTGGG---CAAGT-----AGTTC---CTTTTGC-TC--CGAAGGAGTTT---TTTTATTTCCAGTAT--T--------TGTTACCATGAAAAC-A-A-Taagtatcttctgttaccatggaaacaaatagccaagacagttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaagtttttattttccgtatctttctgtaactatggaaacacatcaccaaaacctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|7 : tctatattaccttgacctttgtggataattgacgtagcgaacaacatataagctccaaaacctttttaggtaacttcactaaactttgtacacatgtcaacctcataatctagtagtgccatttggtatgtttgagttTTACTGTTTCCGGAGCA-CATCTACAAA---AT---CCCTAAAGGTAACTTCtacgaaacataagttgtctcttagtatgaatggttgtttgatatattattcaaatcctgtacaaactttctaacacagtgtacatgtgttgttatatactcggtctg
gi|12 : aaGTTTCCGGGGCA-CAACTACAATACATT---TC---CCGGTAACTTCAAGAAATTTTTAACAAATGAAAGA-ATAAAAACTATCTA-TCA---AATAT--GTTTTTGC-CATTTGAGGGttgatataagttcacttgtccggctgatagtgaagaagtgcctatagctgtgattgagttttgattt
gi|21 : TTTCCGGAACA-CAACTTCCAAACTTG---TC---ATGGTACCTTCATGAAACGTTGCTCACATGTCAGC-
gi|5 : TTTCAGGTGTA-TATTTCTAAAACCTT---TC---TATATAACTTTGCAAAATT-TGTACAAAGGTCAA---------C---CTAGT--------------------------------G--T---TTTCA---TTCACAG--TTTTATTC-TGTAACTATGCAAAC-A-ATTAGCAC---AGA---TA---TCGAAATTCTGTTTTTTCGGTGCA-CAATT-TCCGAAa
gi|9 : ccaTTCCGGAGCATCAATTG-AAAATTGT---TG---AGGATAATTTCAAGAAACTAAGCATACATATCCACTCTTGTTGA---CTA-------AGTGT--ATTTTTGC-TA--TTGGAGAG--TCTATTTTAcctagtgattccgtagtgccttttactgtgtggaaatttgattttcatgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|2 : CAAAACCTT---TT---TAGGTAACTTCACTAAACTTTGTACACATGTCAAC-CTCATAAT---CTAGT-----AGTGC---CATTTGG-TA--TGTTTGAG--T---TTTCATTTTCAATAT--ATTTT--C-TGGTACCATGGAAAC-A-AATAGCAA---AAA---TT---ACTAAATTC------TC------A-TAA-C-TTTAAAACTGTTCAAGATAGTTTCGTGA---ATATTTGTATACATGTCAGTCTAGTG-GGC-----A-----AGT--AGTTC-CTTTTGC-TCCGAA-GGAGTTTTTTTATTTCCAGTATT-------------T--GTTACCA----TGAAAAC--A------AT-TACGAA--ACATAAGTTGTCTCTcta
gi|26 : tctatattaccttgacctttgtggataattgacgtagcgaacaacatataagctcCAAAACTAT---TC---AAGGTAA-TTCATAAAGCTTTGTAtagtatgaatggttgtttgatatattattcaaatcctgtacaaactttctaacacagtgtacatgtgttgttatatactcggtctg
gi|1 : aatttcctgagctc---AAGATGATTTCATGAAACTC-ATACTTATGCCAGC-TTTGTTGT---TAAGT-----GGTGC--ATTTT-GC-TG--TGAGGGAAA-T---TTTT--TTTTAGTAT--TTTT---CATATT-CCACGGAAAC-A-T-GAGCCA---AAA---TT---A-AAAGTTCTCCATTACAGGAGCA-TAC-T-TCAAAAATCGTTCAAGATAATTTAATGA---------GTGTACATGTCAACC--ATGTGGT-C-----TTATAGT--A---C-CTTTCAC-TATGAG-AGAG--TTTTCAT--------TTTCAGTATTTGTTCT--GTTACCA----TGGAAAC--AGTT---AG-CC-AAA--Aa
gi|3 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtca---AGGGTAACTTCATGAAACTTTGTTCAAATTTCAAC-CTGATGAT---AAAGT-----AATGC---CTTTTGC-TA--TGATCAAG--T---TTT--ATTTT-ATATTATTTTTTTC-TATTACCGTGGAAAC--------------AAA---T---------AT---------CCAGAGCA-CCA-C-TCCAAAACTGTTCAAGGTAACTTCATGA---AACTTTGTAAACATGTCAACC----------------------T--AGTGG-C-----C-TA-----GAAG--TATC--T--------TC-------------T--GTTACCA----TGGAAACAAA--T---AG-CC-AAG--ACAatgtgtctccctctctgctgtacaactccaacccttaagtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|6 : AGCTTCATGTAACTTTGTATTCATGTCAAC-CTAGTTGT---GTATC-----AGTACCAGTT---GC-TA--TGAGTGAG--T---TTTAATTTTCAA-----TTATTTTC-TGTTTCCATGGAAAC-A-AATAGCCA---AAA---TT---ACAAAATTCGCTTTTTCCAGAGTA-CAA-C-T-CGAAACAGTACATGGTATTTCCACAA---AACTTTCCATACATGCTACCT--ATT-GATCTG------GTAATTAAATGC-CTTTCACTTAT-AG-GGAG--TTTCCgttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaagtttttattttccgtatctttctgtaactatggaaacacatcaccaaaacctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|11 : ttcttgaatacaattttaaactgttc---CTAGT-----AGTGT---CTTTTGC-TA--TGTGGGAG--T---TT
gi|18 : TTATCTC-TGTTACCGTGGAAAA-A-A-TA---A---AAA---TATTTGCAAAATGTACTGTTTCCGGAGTA-TAA-C-TTTAAAAccatgtttaagtttcagaactcaaaatatctgactgaaatagcacatggcgggggatattgacgactacctcttct
gi|20 : taTTTC-TGTTACCATAGAAAC-AGA-TATACA---ACA---TT---ACAAAATTCACCGTTTTCGGGGCA-CAA-C-TTAAAAA
gi|19 : C-TGTTACCGTGGAAACAA-A-TAGTTAACCAGA---TT---ACCAAATTCTCTGTCTTTCGAGCA-TAA-C-TTCAAAACTc
gi|27 : A---AAC---TT---ACAAAATTCACCGTTTCCGGAGTA-CAA-G-TCCAAAA
gi|7 : gAATT-ACTGTTTCCGGAGCA-CAT-C-TACAAAATCCCTAAAGGTAACTTCTTGATATAA----GTTCACTTGTC--C-------GGC-TGATAG-TGAAGA--AGTGC-CTATAGC-TGTGAT-TGAG--TTTTGAT--------TT-------------c
gi|23 : ACTGTTTCTGAATCA-TTA-C-TCCAAAACTGTTTATGGTAACACCACAA---AAC--TGTGCACAT
gi|12 : GTTTCCGGGGCA-CAA-C-TACAATACATTTCCCGGTAACTTCAAGA---AATTTTa
gi|21 : TTTCCGGAACA-CAA-CTTCCAAACTTG-TCATGGTACCTTCATGA---AACGTTGCTCACATGTCAGCtaacaaatgaaagaataaaaactatctatcaaatatgtttttgccatttgaggg
gi|26 : TTTCCTGAGC--------TCCAAAACTATTCAAGGTAAT-TCATAA---AGCTTTGTa
gi|6 : aaTTCTTGAATA-CAA-T-TTTAAA-CTGTTCAG-----CTTCATGT---AACTTTGTATTCATGTCAACC---TA-G-T-TG-----TGTATC--AGTAC-CAGTTGC-TATGAG-TGAG--TTTTAAT--------TTTCAATTATTTTC-T--GTTTCCA----TGGAAACAAA--T---AGCCA-AAATTACA--AAAT-TCGCTaa
gi|9 : TTCCGGAGCATCAA---TTGAAAATTGTTGAGGATAATTTCAAGA---AACTAAGCATACATATCCACT--CT--TGT-TG--A---CTA----AGTGTATTTTTGC-TATTGG-AGAG--TCT--AT--------TT-------------T--ACTAttttccagagtacaactcgaaacagtacatggtatttccacaaaactttccatacatgctacctattgatctggtaattaaatgcctttcacttatagggagtttcc
gi|11 : TAGT--AGTGT-CTTTTGC-TATGTG-GGAG--TTTCCATG-------TT-------------TAAGTT-TCAGAACTCAAAAT--A--T---
gi|8 : cAGT--AGTGC-TTTTTGC-----AGTGGAT--TTTTTTT--------TT-------------TAAGTT--------TCAAAAC--A--TCCAAG-TA-AAA--ctgactgaaatagcacatggcgggggatattgacgactacctcttct
gi|13 : ttcacaactccaaaagctagtggcccAGT--AGTGG-CTTTTGC-TGTG------G--TTTTCA---------------------------G--AACA----TCCAAGT--A--T---AA-TA-taccccatggtggggatattgacggccacatt
gi|16 : gtgcacaacttcaagacctaatggtcgTGC-CTTTTGG-TATGTA-GAAT--TGTTCATG-------TTTA-----------T--GTTACCT----ACGAAAC--A--tcccatggtgtgggacattgacagcttgtg
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CTCCGTCGCACTTCTCCAAAAACTAATTTGCTGTAAATTAGTTCTTATTTTCAATTTTCAGAACATTTAAATAAAATACCCCGTGGTGGGGGTAATTGACGACTACGT
Unaligned ( gi|14 ): GGTGCACACTCCAGAACCTAGTGAAGTAGTTTCTATTTTTAAGTTTCAGAACGTCTAAAAAAATATCCCATGGCGGAGGATATTGATGACTACATCT
Unaligned ( gi|15 ): TACTTTGAAAGAGTTTTCATTTTCAGGTTTCACAACTCGGAACATCTGAGAAAAATACCCCATGGTGGGGGATATTGATGAGTAAATCTTC
Unaligned ( gi|17 ): TTTCAAATTTCAGAACATCGCAATAAAAGATCCCATGATAAGACCAAAGGCGAGGGATACTGACGATTACGTCCT
Unaligned ( gi|22 ): CAGAACTCAAAATATCTGAGTATCTACCCCATAATAGGGGATATTGATGAGTTCTTTTTCTTG
Unaligned ( gi|24 ): TCAGATCTCAGAAACTGTAAGTAAAATACCTCATGGTAGGCAAAATTGACAACTGTCTT
Unaligned ( gi|25 ): TCTGAACATCTGAGTAAAATACCCTATGACTGGGGATATTGATGATTACATCTTC
Alignments
lowQualScore : 1 333 1 222 5555555555555 1111 2222222 111 5555555555555555555555 22222222 4444444444444 333333333333 111111
lowQualScore : 4 5 111 1 3 4 4 111 0000000000000 6 0 1 7 22 1 777 0 0 1 77 0 44 44 8888888 55 2 7 0 2222 2 7 3 1 0000000 33 3 2 3 555 0 3 77777777 3 2 44 2 1 1 2 1 0 5 8888888888888888888888 5 2 5 44 77 77 44444444 8888888888888 5 999999999999 666666 1
lowQualScore : . . ... . . . . ... ............. . . . . .. . ... . . . .. . .. .. ....... .. . . . .... . . . . ....... .. . . . ... . . ........ . . .. . . . . . . . ...................... . . . .. .. .. ........ ............. . ............ ...... .
lowQualScore : 0 0 555 5 0 0 0 555 0000000000000 5 7 0 1 00 7 888 1 8 8 99 4 66 66 9999999 22 9 3 9 4444 9 1 1 0 6666666 11 6 5 6 222 5 6 00000000 6 3 66 9 6 0 7 8 1 7 8888888888888888888888 7 7 7 44 99 66 22222222 3333333333333 0 888888888888 888888 0
consensus : NTTGCNATGAGGGAGTTNTCATTTTCAGTATNTNTTCTGTTGCCATGGAAACAGNTNGCCAAATTGAATGTGTCTCCTT-A-TGTTTCCGGNGTACAACTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--TN---GTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCAT-TTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-TAGC-CAA---AA---TTA-CAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T-GGTTGG--C---GTAGT--AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAAC--A-TTA-GCN-AAAACA-TAAGGTGTCTCT
Reference ( family-9 ) : NTTGCTATGAGCGAGTTT--ATTTTCAATATATTTTCTGTTACCATGGAAACAAATAGCCAAATTAAAT---TCNCCTT-A-TGTTTCCGGAGCACAACTNCAAAACNNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--TN---GTGGTCTAGTAGTGC-CTTTCGCTATGAG-GGAG-TTTTCAT-TTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-TAGC-CAA---AA---TTA-CAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCANGGTAACTTCATGAAACTTTGTATACATGTCAAC-C-T-GGTTGA--T---GTAGT--AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATCGAAAC--A--TA-GCA-AAAACA-TAAGNTGTCNCT
gi|1 : AACTTCAAA-CTGTCAAAGATGATTTCATGA---AACTC-ATACTTA--TGCC--AG--CT--TT---GTTGTTAAGTGGTGC-ATTTTGCTGTGAG-GGAAATTTT--T-TTTTAGTAT--TTTT---CATATT-CCACGGAAAC-A-T-GAGC-CAA---AA---TTA--AAAGTTCTCCATTACAGGAGCA-TACTTCAAAAATCGTTCAAGATAATTTAATGA------GTGTACATGTCAAC-CAT-G--TGG--T---CTTAT--AGTAC-CTTTCAC-TATGAGAGAG--TTTTCAT--------TTTCAGTATTTGTTCTGTTACCATGGAAAC--AGTTA-GCC-AAAA-A-T---GTGTCT
gi|1 : ggaactcaacagcaggtaaagtacaattctgttCTATGAGAGAGTTTTCATTTTCAGTATTTGTTCTGTTACCATGGAAACAGTTAGCCAA---AAATGTGTCTCCC------TCTCTGCTGTACAACTCCAAcctctctgctgtacaactccaacccttaagtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcaTGTACA-A--CTCC--AA--CC--CTTAAGTGGTCTAGTAGTGC-CTTTTGCAGTGAA-GTAG-TTTTTAT-TTTCAcccttaagtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgcTGG--T---CTAGT--AGTGC-CTTTTGC-AGTGAAGTAG--TTTTTAT--------TTTCAA----------GTT----TCAAAAC--ATCTATGTATAAAACACTACGGTGagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|11 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgctgtacaactccaacccttaagCTAGTAGTGT-CTTTTGCTATGTG-GGAG-TTTCCATGTTTAAGTgggctcctggtggagaatattgacgactaca
gi|12 : GTTTCCGGGGCACAACTACAATACATTTCCCGGTAACTTCAAGA---AATTTTTAACAAA--TGttcagaactcaaaatatctgactgaaatagcacatggcgggggatattgacgactacctcttct
gi|13 : GTGCACAACT-TC--AAGACC--TA---ATGGTCGAGTAGTGG-CTTTTGCTGTG------G-TTTTCAaaagaataaaaactatctatcaaatatgtttttgccatttgaggg
gi|16 : TGC-CTTTTGGTATGTA-GAAT-TGTTCAT-GTTTA---------------TGTTACCTACGAAAC-A-AATAGC-CCA---AA---TTA-CTGAATTCTCgaacatccaagtataatatcccatggtgtgggacattgacagcttgtg
gi|18 : TTATCTC-TGTTACCGTGGAAAA-A-A-TA----AA---AATATTTG-CAAAATGTACTGTTTCCGGAGTA-TAACTTTAAAAattactataaactg
gi|19 : taC-TGTTACCGTGGAAAC-A-AATAGT-TAACCAGA---TTA-CCAAATTCTCTGTCTTTCGAGCA-TAACTTCAAAACT
gi|2 : AGCTCCAAAACCTTTTTAGGTAACTTCACTA---AACTTTGTACACA--TGTC--AA--CC--TC---ATAATCTAGTAGTGC-CATTTGGTATGTT-TGAG-TTTTCAT-TTTCAATAT--ATTTT--C-TGGTACCATGGAAAC-A-AATAGC-AAA---AA---TTA-CTAAATTCTC------------A-TAACTTTAAAACTGTTCAAGATAGTTTCGTGAATATTTGTATACATGTCAGT-C-T-AGTGGG--C---A-AGT--AGTTC-CTTTTGC-TCCGAAGGAGTTTTTTTATTTCCAGTATTT-------------GTTACCATGAAAAC--AATTA--C--GAAACA-TAAGTTGTCTCT
gi|20 : tctatattaccttgacctttgtggataattgacgtagcgaacaacatataTTTC-TGTTACCATAGAAAC-AGA-TATA-CAA---CA---TTA-CAAAATTCACCGTTTTCGGGGCA-CAACTTAAAAACtagtatgaatggttgtttgatatattattcaaatcctgtacaaactttctaacacagtgtacatgtgttgttatatactcggtctg
gi|21 : TTTCCGGAACA-CAACTTCCAAACTTGTCATGGTACCTTCATGAAACGTTGCTCACATGTCAGC-
gi|23 : CTGTTTCTGAATCA-TTACTCCAAAACTGTTTATGGTAACACCACAAAAC--TGTGCACATa
gi|26 : aTTTCCTGAGC------TCCAAAACTATTCAAGGTAA-TTCATAAAGCTTTGTAa
gi|27 : aaAA---AC---TTA-CAAAATTCACCGTTTCCGGAGTA-CAAGTCCAAAACa
gi|3 : gAGGGTAACTTCATGA---AACTTTGTTCAAA--TTTC--AA--CC--TG---ATGATAAAGTAATGC-CTTTTGCTATGAT-CAAG-TTTT-AT-TTT--ATATTATTTTTTTC-TATTACCGTGGAAAC-A-A-------------------A-TA------------TCCAGAGCA-CCACTCCAAAACTGTTCAAGGTAACTTCATGAAACTTTGTAAACATGTCAAC-C-------------------T--AGTGG-C-----C-TA----GAAG--TATC--T--------TCT-------------GTTACCATGGAAACAAA--TA-GCC-AAGACA-
gi|3 : CAAGACAGTTACATGA---GACTTTGTAAACA--TGTC--TA--CCTATA---GTGGTCAAGTAGT-T-TTTTTGTTGTTAGAAAAG-TTTTTAT-TTTCCGTA-----TCTTTC-TGTAACTATGGAAAC-ACA-TCAC-CAA---AA---gttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaagtttttattttccgtatctttctgtaactatggaaacacatcaccaaaacctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|4 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgccttttgctatgatcaagttttattttatattatttttttctattaccgtggaaacaaatatccagagcaccactccaaaactgttcaaggtaacttcatgaaactttgtaaacatgtcaacctagtggcctagaagtatcttctgttaccatggaaacaaatagcTTGCAATGAGGGAGTTA--ATTTTCAATATGTTTTCTGTTGCTATGAAAACAAATTGCCAAATTGAAT---TTTTTTTTA-TGTTTCCGGTGTACAACCACAAAGCAATTCAAGGTAACTTCACGG---AACTCTGTACACA--TGTC--AA--CC--TG---GAGGCCTAGTAATGCGTTTTTGCTATGAG-GGAG-TTTTTAA-TGTCAACAT--TTTTTTTC-TGTTACCATGAAAAC-A-A-TAGC-CAA---AA---TGA-CAAAATTCACCGTTTCCGGAGCA-CAACTCCAAAATTGTTCAAGGTAACATCACGAAACTTTGTTTACATGTCAAC-CATGGGTTGAGTT---GTAGT--AGTGC-CTTTTGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATCAAAAC--A--TA-GTA-AAAACA-AGAAATGTCACTcctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|5 : aTTTCAGGTGTATATTTCTAAAACCTTTCTATATAACTTTGCAA---AA-TTTGTACAAA--GGTC--AA--CC----------------TAGTG---------------------TTTTCAT-TCACAGT-----TTTATTC-TGTAACTATGCAAAC-A-ATTAGCACAG---A-----TATCGAAATTCTGTTTTTTCGGTGCA-CAATTTCCGAAC
gi|5 : ccaGTGCACAA-TTTCCGAA--CC--TA---GTGATTCCGTAGTGC-CTTTTACTGTGTG-GAAA--TTTGAT-TTTCActagtgattccgtagtgccttttactgtgtggaaatttgattttcatgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|6 : ccatttcaggtgtatatttctaaaacctttctatataactttgcaaaatttgtacaaaggtcaacctagtgttttcattcacagttttattctgtaactatgcaaacaattagcacagatatcgaaattctgttttttcgTTCTTGAATACAATTTTAAA-CTGTTCAG-----CTTCATGT---AACTTTGTATTCA--TGTC--AA--CC--TA---GTTGTGTATCAGTAC-CAGTTGCTATGAG-TGAG-TTTTAAT-TTTCAA-----TTATTTTC-TGTTTCCATGGAAACAA-A-TAGC-CAA---AA---TTA-CAAAATTCGCTTTTTCCAGAGTA-CAACT-CGAAACAGTACATGGTATTTCCACAAAACTTTCCATACATG-CTAC-C-T--ATTGA--TCTGGTAATTAAATGC-CTTTCACTTAT-AGGGAG--TTTCCtgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|7 : TT-ACTGTTTCCGGAGCACATCTACAAAATCCCTAAAGGTAACTTCTTGATATAAGTT----CACT--TGTC--CG--GC--TG---ATAGTGAAGAAGTGC-CTATAGCTGTGAT-TGAG-TTTTGAT-TT
gi|8 : aa--AA--GC--TA---GTGGCCCAGTAGTGC-TTTTTGC----AGTGGAT-TTTTTTT-TTTAAGT
gi|9 : ttcacaactccaaTTCCGGAGCATCAA-TTGAAAATTGTTGAGGATAATTTCAAGAAACTAAGCATACATATCCACTC-T-TGTTGA--C----TA----AGTGTATTTTTGC-TATTGGAGAG--TCT--AT--------TTT-------------ACTAttcaaaacatccaagtaaaataccccatggtggggatattgacggccacatt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTCCGTCGCACTTCTCCAAAAACTAATTTGCTGTAAATTAGTTCTTATTTTCAATTTTCAGAACATTTAAATAAAATACCCCGTGGTGGGGGTAATTGACGACTACGT
Unaligned ( gi|14 ): GGTGCACACTCCAGAACCTAGTGAAGTAGTTTCTATTTTTAAGTTTCAGAACGTCTAAAAAAATATCCCATGGCGGAGGATATTGATGACTACATCT
Unaligned ( gi|15 ): TACTTTGAAAGAGTTTTCATTTTCAGGTTTCACAACTCGGAACATCTGAGAAAAATACCCCATGGTGGGGGATATTGATGAGTAAATCTTC
Unaligned ( gi|17 ): TTTCAAATTTCAGAACATCGCAATAAAAGATCCCATGATAAGACCAAAGGCGAGGGATACTGACGATTACGTCCT
Unaligned ( gi|22 ): CAGAACTCAAAATATCTGAGTATCTACCCCATAATAGGGGATATTGATGAGTTCTTTTTCTTG
Unaligned ( gi|24 ): TCAGATCTCAGAAACTGTAAGTAAAATACCTCATGGTAGGCAAAATTGACAACTGTCTT
Unaligned ( gi|25 ): TCTGAACATCTGAGTAAAATACCCTATGACTGGGGATATTGATGATTACATCTTC
Alignments
lowQualScore : 111 1 555555555555555555555555555555 1111 1111111 111 3333333333333333333333 22222222 4444444444444 222222222222 111111
lowQualScore : 1 222 1 4 0 0 44 1 444444444444444444444444444444 1 5 1 5 11 2 1 777 0 0 1 77 0 44 44 44 6666 22 2 3333 2 7 3 1 9999999 33 3 2 3 555 0 3 77777777 3 2 44 2 1 1 2 1 1 0 5 1111111111111111111111 5 2 5 4 77 55 44444444 8888888888888 999999999999 666666
lowQualScore : . ... . . . . .. . .............................. . . . . .. . . ... . . . .. . .. .. .. .... .. . .... . . . . ....... .. . . . ... . . ........ . . .. . . . . . . . . ...................... . . . . .. .. ........ ............. ............ ......
lowQualScore : 0 000 0 0 7 7 77 0 000000000000000000000000000000 0 0 0 1 22 9 7 888 1 8 8 99 4 66 66 66 8888 22 9 1111 9 1 1 0 4444444 11 6 5 6 222 5 6 00000000 6 3 66 9 6 3 7 7 8 1 7 9999999999999999999999 7 7 7 3 99 33 22222222 3333333333333 444444444444 000000
consensus : NTTGCNATGAGGGAGTTTTCATTTTCAGTATNT-TTCTGTTACTATGGAAACANATCGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--TA---GTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCAT-TTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-TAGC-CAA---AA---TTA-CAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T-GGTTGG--C---GTAGT--AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAACAA-T-TA-GC-CAAAACA-TAAGGTGTCTCT
Reference ( family-9 ) : NTTGCNATGAGGGAGTTNTCATTTTCAGTATNTNTTCTGTTGCCATGGAAACAGNTNGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--TN---GTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCAT-TTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-TAGC-CAA---AA---TTA-CAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T-GGTTGG--C---GTAGT--AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAAC-A-T-TA-GC-NAAAACA-TAAGGTGTCTCT
gi|1 : AA-CTTCAAA-CTGTCAAAGATGATTTCATGA---AACTC-ATACTTA--TGCC--AG--CT--TT---GTTGTTAAGTGGTGC-ATTTTGCTGTGAG-GGAAATTTT--T-TTTTAGTAT--TTTT---CATATT-CCACGGAAAC-A-T-GAGC-CAA---AA---TTA--AAAGTTCTCCATTACAGGAGCA-TACTTCAAAAATCGTTCAAGATAATTTAATGA------GTGTACATGTCAAC-CAT-G--TGG--T---CTTAT--AGTAC-CTTTCAC-TATGAGAGAG--TTTTCAT--------TTTCAGTATTTGTTCTGTTACCATGGAAAC-AGT-TA-GC-CAAAA-A-T---GTGTCTC
gi|1 : ggaactcaacagcaggtaaagtacaattctgttCTATGAGAGAGTTTTCATTTTCAGTATTTGTTCTGTTACCATGGAAACAGTTAGCCAAA--------AATGTGTCT-------CCC-----TCTCTGCTGTACAA-CTCC--AACCCTT-AAGcctctctgctgtacaactccaacccttaagtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcaTGTACA-A--CTCC--AA--CC--CTTAAGTGGTCTAGTAGTGC-CTTTTGCAGTGAA-GTAG-TTTTTAT-TTTCAtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgcTGG--T---CTAGT--AGTGC-CTTTTGC-AGTGAAGTAG--TTTTTAT--------TTTCAA----------GTT----TCAAAAC-A-TCTATGTATAAAACACTACGGTGagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|11 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgctgtacaactccaacccttaagCTAGTAGTGT-CTTTTGCTATGTG-GGAG-TTTCCATGTTTAAGTgggctcctggtggagaatattgacgactaca
gi|12 : GTTTCCGGGGCACAA-CTACAATACATTTCCCGGTAACTTCAAGA---AATTTTTAACAAA--TGttcagaactcaaaatatctgactgaaatagcacatggcgggggatattgacgactacctcttct
gi|13 : GTGCACAACT-TC--AAGACC--TA---ATGGTCGAGTAGTGG-CTTTTGCTGTG------G-TTTTCAaaagaataaaaactatctatcaaatatgtttttgccatttgaggg
gi|16 : TGC-CTTTTGGTATGTA-GAAT-TGTTCAT-GTTTA---------------TGTTACCTACGAAAC-A-AATAGC-CCA---AA---TTA-CTGAATTCTCgaacatccaagtataatatcccatggtgtgggacattgacagcttgtg
gi|18 : TTATCTC-TGTTACCGTGGAAAA-A-A-TA----AA---AATATTTG-CAAAATGTACTGTTTCCGGAGTA-TAACTTTAAAAattactataaactg
gi|19 : taC-TGTTACCGTGGAAAC-A-AATAGT-TAACCAGA---TTA-CCAAATTCTCTGTCTTTCGAGCA-TAACTTCAAAACT
gi|2 : TATAAGCTCCAAAACCTTTTTAGGTAACTTCACTA---AACTTTGTACACA--TGTC--AA--CC--TC---ATAATCTAGTAGTGC-CATTTGGTATGTT-TGAG-TTTTCAT-TTTCAATAT--ATTTT--C-TGGTACCATGGAAAC-A-AATAGC-AAA---AA---TTA-CTAAATTCTC------------A-TAACTTTAAAACTGTTCAAGATAGTTTCGTGAATATTTGTATACATGTCAGT-C-T-AGTGGG--C---A-AGT--AGTTC-CTTTTGC-TCCGAAGGAGTTTTTTTATTTCCAGTATTT-------------GTTACCATGAAAACAA-T-TA----CGAAACA-TAAGTTGTCTCT
gi|20 : tctatattaccttgacctttgtggataattgacgtagcgaacaacaTTTC-TGTTACCATAGAAAC-AGA-TATA-CAA---CA---TTA-CAAAATTCACCGTTTTCGGGGCA-CAACTTAAAAACtagtatgaatggttgtttgatatattattcaaatcctgtacaaactttctaacacagtgtacatgtgttgttatatactcggtctg
gi|21 : TTTCCGGAACA-CAACTTCCAAACTTGTCATGGTACCTTCATGAAACGTTGCTCACATGTCAGC-
gi|23 : CTGTTTCTGAATCA-TTACTCCAAAACTGTTTATGGTAACACCACAAAAC--TGTGCACATa
gi|26 : aTTTCCTGAGC------TCCAAAACTATTCAAGGTAA-TTCATAAAGCTTTGTAa
gi|27 : aaAA---AC---TTA-CAAAATTCACCGTTTCCGGAGTA-CAAGTCCAAAACa
gi|3 : gAGGGTAACTTCATGA---AACTTTGTTCAAA--TTTC--AA--CC--TG---ATGATAAAGTAATGC-CTTTTGCTATGAT-CAAG-TTTT-AT-TTT--ATATTATTTTTTTC-TATTACCGTGGAAAC-A-A-------------------A-TA------------TCCAGAGCA-CCACTCCAAAACTGTTCAAGGTAACTTCATGAAACTTTGTAAACATGTCAAC-C-T-AG-TGG--C---CTAGA--AGTAT-C-------------------------T--------TCT-------------GTTACCATGGAAACAA-A-TA-GC-CAAGACA-
gi|3 : CAAGACAGTTACATGA---GACTTTGTAAACA--TGTC--TA--CCTATA---GTGGTCAAGTAGT-T-TTTTTGTTGTTAGAAAAG-TTTTTAT-TTTCCGTA-----TCTTTC-TGTAACTATGGAAAC-ACA-TCAC-CAA---AA---gttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaagtttttattttccgtatctttctgtaactatggaaacacatcaccaaaacctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|3 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgccttttgctatgatcaagttttattttatattatttttttctattaccgtggaaacaaatatccagagcaccactccaaaactgttcaaggtaacttcatgaaactttgtaaacatgtcaacctagtggcctagaagtatcttctgttaccatggaaacaaatagcAGTTTTTATTTTCCGTATCT-TTCTGTAACTATGGAAACACATCACCAAAACCTAATGAATG-GTCTGGTAGCCCCTTA-Tcctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|4 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgccttttgctatgatcaagttttattttatattatttttttctattaccgtggaaacaaatatccagagcaccactccaaaactgttcaaggtaacttcatgaaactttgtaaacatgtcaacctagtggcctagaagtatcttctgttaccatggaaacaaatagccaagacagttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaTTGCAATGAGGGAGTTA--ATTTTCAATATGTTTTCTGTTGCTATGAAAACAAATTGCCAAA---T--TGAATTTTTTT---------TTA-TGTTTCCGGTGTACAA-CCACAAAGCAATTCAAGGTAACTTCACGG---AACTCTGTACACA--TGTC--AA--CC--TG---GAGGCCTAGTAATGCGTTTTTGCTATGAG-GGAG-TTTTTAA-TGTCAACAT--TTTTTTTC-TGTTACCATGAAAAC-A-A-TAGC-CAA---AA---TGA-CAAAATTCACCGTTTCCGGAGCA-CAACTCCAAAATTGTTCAAGGTAACATCACGAAACTTTGTTTACATGTCAAC-CATGGGTTGAGTT---GTAGT--AGTGC-CTTTTGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATCAAAAC-A---TA-GT-AAAAACA-AGAAATGTCACTtctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|5 : aTTTCAGGTGTATAT-TTCTAAAACCTTTCTATATAACTTTGCAA---AA-TTTGTACAAA--GGTC--AA--CC--TA---GTG--------------TTTT------------------CAT-TCACAG-----TTTTATTC-TGTAACTATGCAAAC-A-ATTAGCACAG---A-----TATCGAAATTCTGTTTTTTCGGTGCA-CAATTTCCGAAC
gi|5 : ccaGTGCACAA-TTTCCGAA--CC--TA---GTGATTCCGTAGTGC-CTTTTACTGTGTG-GAAA--TTTGAT-TTTCActagtgattccgtagtgccttttactgtgtggaaatttgattttcatgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|6 : ccatttcaggtgtatatttctaaaacctttctatataactttgcaaaatttgtacaaaggtcaacctagtgttttcattcacagttttattctgtaactatgcaaacaattagcacagatatcgaaattctgttttttcgTTCTTGAATACAA-TTTTAAA-CTGTTCAG-----CTTCATGT---AACTTTGTATTCA--TGTC--AA--CC--TA---GTTGTGTATCAGTAC-CAGTTGCTATGAG-TGAG-TTTTAAT-TTTCAA-----TTATTTTC-TGTTTCCATGGAAACAA-A-TAGC-CAA---AA---TTA-CAAAATTCGCTTTTTCCAGAGTA-CAACT-CGAAACAGTACATGGTATTTCCACAAAACTTTCCATACATG-CTAC-C-T--ATTGA--TCTGGTAATTAAATGC-CTTTCACTTAT-AGGGAG--TTTCCtgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|7 : TTACTGTTTCCGGAGCACAT-CTACAAAATCCCTAAAGGTAACTTCTTGATATAAGTT----CACT--TGTC--CG--GC--TG---ATAGTGAAGAAGTGC-CTATAGCTGTGAT-TGAG-TTTTGAT-TT
gi|8 : aa--AA--GC--TA---GTGGCCCAGTAGTGC-TTTTTGCAGT----GGAT-TTTTTTT-TTTAAGT
gi|9 : ttcacaactccaaTTCCGGAGCATCAA-TTGAAAATTGTTGAGGATAATTTCAAGAAACTAAGCATACATATCCACTC-T-TGTTGA--C----TA----AGTGTATTTTTGC-TATTGGAGAG--TCT--AT--------TTT-------------ACTAttcaaaacatccaagtaaaataccccatggtggggatattgacggccacatt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTCCGTCGCACTTCTCCAAAAACTAATTTGCTGTAAATTAGTTCTTATTTTCAATTTTCAGAACATTTAAATAAAATACCCCGTGGTGGGGGTAATTGACGACTACGT
Unaligned ( gi|14 ): GGTGCACACTCCAGAACCTAGTGAAGTAGTTTCTATTTTTAAGTTTCAGAACGTCTAAAAAAATATCCCATGGCGGAGGATATTGATGACTACATCT
Unaligned ( gi|15 ): TACTTTGAAAGAGTTTTCATTTTCAGGTTTCACAACTCGGAACATCTGAGAAAAATACCCCATGGTGGGGGATATTGATGAGTAAATCTTC
Unaligned ( gi|17 ): TTTCAAATTTCAGAACATCGCAATAAAAGATCCCATGATAAGACCAAAGGCGAGGGATACTGACGATTACGTCCT
Unaligned ( gi|22 ): CAGAACTCAAAATATCTGAGTATCTACCCCATAATAGGGGATATTGATGAGTTCTTTTTCTTG
Unaligned ( gi|24 ): TCAGATCTCAGAAACTGTAAGTAAAATACCTCATGGTAGGCAAAATTGACAACTGTCTT
Unaligned ( gi|25 ): TCTGAACATCTGAGTAAAATACCCTATGACTGGGGATATTGATGATTACATCTTC
Alignments
lowQualScore : 111 1 1 555555555555555555555555555555 111111 1111 2222222 3333333333333333333333 22222222 4444444444444 11 1111 111111
lowQualScore : 1 000 1 3 3 1 3 444444444444444444444444444444 1 5 1 5 11 2 1 777 0 0 1 77 0 44 44 111111 22 2 3333 2 7 3 1 6666666 0 3 2 7 99999 0 3 666666666 3333 2 1 1 2 1 1 0 5 1111111111111111111111 5 2 5 4 77 55 44444444 8888888888888 33 7777 666666
lowQualScore : . ... . . . . . .............................. . . . . .. . . ... . . . .. . .. .. ...... .. . .... . . . . ....... . . . . ..... . . ......... .... . . . . . . . . ...................... . . . . .. .. ........ ............. .. .... ......
lowQualScore : 0 000 0 3 3 0 7 000000000000000000000000000000 0 0 0 1 22 9 7 888 1 8 8 99 4 66 66 333333 22 9 1111 9 1 1 0 4444444 9 6 5 3 22222 5 6 333333333 0000 9 6 3 7 7 8 1 7 9999999999999999999999 7 7 7 3 99 33 22222222 3333333333333 00 4444 000000
consensus : NTTGCNATGAGGGAGTTTTNATTTTCAGTATNT-TT-CTGTTACTATGGAAACANATCGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CCT---A--GTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCAT-TTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-T-AGC-CAA---A-A---TTACAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T-GGTTGG--C---GTAGT--AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAACAATTA-GC-CAAAACA-TAAGGTGTCTCT
Reference ( family-9 ) : NTTGCNATGAGGGAGTTTTCATTTTCAGTATNT-TT-CTGTTACTATGGAAACANATCGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CCT---A--GTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCAT-TTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-T-AGC-CAA---A-A---TTACAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T-GGTTGG--C---GTAGT--AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAACAATTA-GC-CAAAACA-TAAGGTGTCTCT
gi|1 : AA-CTTCAAA-CTGTCAAAGATGATTTCATGA---AACTC-ATACTTA--TGCC--AG--CTT---T--GTTGTTAAGTGGTGC-ATTTTGCTGTGAG-GGAAATTTT--T-TTTTAGTAT--TTTT---CATATT-CCACGGAAAC-A-T-G-AGC-CAA---A-A---TTA-AAAGTTCTCCATTACAGGAGCA-TACTTCAAAAATCGTTCAAGATAATTTAATGA------GTGTACATGTCAAC-CAT-G--TGG--T---CTTAT--AGTAC-CTTTCAC-TATGAGAGAG--TTTTCAT--------TTTCAGTATTTGTTCTGTTACCATGGAAACAGTTA-GC-CAAAA-A-T---GTGTCTC
gi|1 : ggaactcaacagcaggtaaagtacaattctgttCTATGAGAGAGTTTTCATTTTCAGTATTTGTT-CTGTTACCATGGAAACAGTTAGCCAAA--------AATGTGTCT-------CCC-----TCTCTGCTGTACAA-CTCC--AACCCTT-AAGcctctctgctgtacaactccaacccttaagtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcaTGTACA-A--CTCC--AA--CCCTTAA--GTGGTCTAGTAGTGC-CTTTTGCAGTGAA-GTAG-TTTTTAT-TTTCAtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgcTGG--T---CTAGT--AGTGC-CTTTTGC-AGTGAAGTAG--TTTTTAT--------TTTCAA----------GTT----TCAAAACATCTATGTATAAAACACTACGGTGagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|11 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgctgtacaactccaacccttaagCTAGTAGTGT-CTTTTGCTATGTG-GGAG-TTTCCATGTTTAAGTgggctcctggtggagaatattgacgactaca
gi|12 : GTTTCCGGGGCACAA-CTACAATACATTTCCCGGTAACTTCAAGA---AATTTTTAACAAA--TGttcagaactcaaaatatctgactgaaatagcacatggcgggggatattgacgactacctcttct
gi|13 : GTGCACAACT-TC--AAGACCT---A--ATGGTCGAGTAGTGG-CTTTTGCTGTG------G-TTTTCAaaagaataaaaactatctatcaaatatgtttttgccatttgaggg
gi|16 : TGC-CTTTTGGTATGTA-GAAT-TGTTCAT-GTTTA---------------TGTTACCTACGAAAC-A-AAT-AGC-CCA---A-A---TTACTGAATTCTCgaacatccaagtataatatcccatggtgtgggacattgacagcttgtg
gi|18 : TTATCTC-TGTTACCGTGGAAAA-A-A-T-A----AA---A-ATATTTGCAAAATGTACTGTTTCCGGAGTA-TAACTTTAAAAattactataaactg
gi|19 : taC-TGTTACCGTGGAAAC-A-AAT-AGT-TAACCAG-A---TTACCAAATTCTCTGTCTTTCGAGCA-TAACTTCAAAACT
gi|2 : TATAAGCTCCAAAACCTTTTTAGGTAACTTCACTA---AACTTTGTACACA--TGTC--AA--CCT---C--ATAATCTAGTAGTGC-CATTTGGTATGTT-TGAG-TTTTCAT-TTTCAATA----TATTTTC-TGGTACCATGGAAACAA-A-T-AGC-AAA---A-A---TTACTAAATTCT------------CA-TAACTTTAAAACTGTTCAAGATAGTTTCGTGAATATTTGTATACATGTCAGT-C-T-AGTGGG--C---A-AGT--AGTTC-CTTTTGC-TCCGAAGGAGTTTTTTTATTTCCAGTATTT-------------GTTACCATGAAAACAATTA----CGAAACA-TAAGTTGTCTCT
gi|20 : tctatattaccttgacctttgtggataattgacgtagcgaacaacaTTTC-TGTTACCATAGAAAC-AGA-T-ATA-CAA---C-A---TTACAAAATTCACCGTTTTCGGGGCA-CAACTTAAAAACtagtatgaatggttgtttgatatattattcaaatcctgtacaaactttctaacacagtgtacatgtgttgttatatactcggtctg
gi|21 : TTTCCGGAACA-CAACTTCCAAACTTGTCATGGTACCTTCATGAAACGTTGCTCACATGTCAGC-
gi|23 : CTGTTTCTGAATCA-TTACTCCAAAACTGTTTATGGTAACACCACAAAAC--TGTGCACATa
gi|26 : aTTTCCTGAGC------TCCAAAACTATTCAAGGTAA-TTCATAAAGCTTTGTAa
gi|27 : aaAA---A-C---TTACAAAATTCACCGTTTCCGGAGTA-CAAGTCCAAAACa
gi|3 : gAGGGTAACTTCATGA---AACTTTGTTCAAA--TTTC--AA--CCT---G--ATGATAAAGTAATGC-CTTTTGCTATGAT-CAAG-TTTT-AT-TTT--ATATTATTTTTTTC-TATTACCGTGGAAAC-A-A---------------------ATA------------TCCAGAGCA-CCACTCCAAAACTGTTCAAGGTAACTTCATGAAACTTTGTAAACATGTCAAC-C-T-AG-TGG--C---CTAGA--AGTAT-C-------------------------T--------TCT-------------GTTACCATGGAAACAAATA-GC-CAAGACA-
gi|3 : CAAGACAGTTACATGA---GACTTTGTAAACA--TGTC--TA--CCT---ATAGTGGTCAAGTAGT-T-TTTTTGTTGTTAGAAAAG-TTTTTAT-TTTCCGTA-----TCTTTC-TGTAACTATGGAAAC-ACA-T-CAC-CAA---A-A---gttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaagtttttattttccgtatctttctgtaactatggaaacacatcaccaaaacctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|3 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgccttttgctatgatcaagttttattttatattatttttttctattaccgtggaaacaaatatccagagcaccactccaaaactgttcaaggtaacttcatgaaactttgtaaacatgtcaacctagtggcctagaagtatcttctgttaccatggaaacaaatagcAGTTTTTATTTTCCGTATCT-TT-CTGTAACTATGGAAACACATCACCAAAACCTAATGAATG-GTCTGGTAGCCCCTTA-Tcctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|4 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgccttttgctatgatcaagttttattttatattatttttttctattaccgtggaaacaaatatccagagcaccactccaaaactgttcaaggtaacttcatgaaactttgtaaacatgtcaacctagtggcctagaagtatcttctgttaccatggaaacaaatagccaagacagttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaTTGCAATGAGGGAGTT--AATTTTCAATATGT-TTTCTGTTGCTATGAAAACAAATTGCCAAA---T--TGAATTTTTTT---------TTA-TGTTTCCGGTGTACAA-CCACAAAGCAATTCAAGGTAACTTCACGG---AACTCTGTACACA--TGTC--AA--CCT---G--GAGGCCTAGTAATGCGTTTTTGCTATGAG-GGAG-TTTTTAA-TGTCAACAT--TTTTTTTC-TGTTACCATGAAAAC-A-A-T-AGC-CAA---A-A---TGACAAAATTCACCGTTTCCGGAGCA-CAACTCCAAAATTGTTCAAGGTAACATCACGAAACTTTGTTTACATGTCAAC-CATGGGTTGAGTT---GTAGT--AGTGC-CTTTTGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATCAAAACA--TA-GT-AAAAACA-AGAAATGTCACTtctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|5 : aTTTCAGGTGTATAT-TTCTAAAACCTTTCTATATAACTTTGCAA---AA-TTTGTACAAA--GGTC--AA--CC----------------TAGTG---------------------TTTTCAT-TCACAGT-----TTTATTC-TGTAACTATGCAAAC-A-A-TTAGCACAG---ATA---T--CGAAATTCTGTTTTTTCGGTGCA-CAATTTCCGAAC
gi|5 : ccaGTGCACAA-TTTCCGAA--CCT---A--GTGATTCCGTAGTGC-CTTTTACTGTGTG-GAAA--TTTGAT-TTTCActagtgattccgtagtgccttttactgtgtggaaatttgattttcatgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|6 : ccatttcaggtgtatatttctaaaacctttctatataactttgcaaaatttgtacaaaggtcaacctagtgttttcattcacagttttattctgtaactatgcaaacaattagcacagatatcgaaattctgttttttcgTTCTTGAATACAA-TTTTAAA-CTGTTCAG-----CTTCATGT---AACTTTGTATTCA--TGTC--AA--CCT---A--GTTGTGTATCAGTAC-CAGTTGCTATGAG-TGAG-TTTTAAT-TTTCAA-----TTATTTTC-TGTTTCCATGGAAACAA-A-T-AGC-CAA---A-A---TTACAAAATTCGCTTTTTCCAGAGTA-CAACT-CGAAACAGTACATGGTATTTCCACAAAACTTTCCATACATG-CTAC-C-T--ATTGA--TCTGGTAATTAAATGC-CTTTCACTTAT-AGGGAG--TTTCCtgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|7 : TTACTGTTTCCGGAGCACAT-CTACAAAATCCCTAAAGGTAACTTCTTGATATAAGTT----CACT--TGTC--CG--GCT---G--ATAGTGAAGAAGTGC-CTATAGCTGTGAT-TGAG-TTTTGAT-TT
gi|8 : aa--AA--GCT---A--GTGGCCCAGTAGTGC-TTTTTGCAGT----GGAT-TTTTTTT-TTTAAGT
gi|9 : ttcacaactccaaTTCCGGAGCATCAA-TTGAAAATTGTTGAGGATAATTTCAAGAAACTAAGCATACATATCCACTC-T-TGTTGA--C----TA----AGTGTATTTTTGC-TATTGGAGAG--TCT--AT--------TTT-------------ACTAttcaaaacatccaagtaaaataccccatggtggggatattgacggccacatt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTCCGTCGCACTTCTCCAAAAACTAATTTGCTGTAAATTAGTTCTTATTTTCAATTTTCAGAACATTTAAATAAAATACCCCGTGGTGGGGGTAATTGACGACTACGT
Unaligned ( gi|14 ): GGTGCACACTCCAGAACCTAGTGAAGTAGTTTCTATTTTTAAGTTTCAGAACGTCTAAAAAAATATCCCATGGCGGAGGATATTGATGACTACATCT
Unaligned ( gi|15 ): TACTTTGAAAGAGTTTTCATTTTCAGGTTTCACAACTCGGAACATCTGAGAAAAATACCCCATGGTGGGGGATATTGATGAGTAAATCTTC
Unaligned ( gi|17 ): TTTCAAATTTCAGAACATCGCAATAAAAGATCCCATGATAAGACCAAAGGCGAGGGATACTGACGATTACGTCCT
Unaligned ( gi|22 ): CAGAACTCAAAATATCTGAGTATCTACCCCATAATAGGGGATATTGATGAGTTCTTTTTCTTG
Unaligned ( gi|24 ): TCAGATCTCAGAAACTGTAAGTAAAATACCTCATGGTAGGCAAAATTGACAACTGTCTT
Unaligned ( gi|25 ): TCTGAACATCTGAGTAAAATACCCTATGACTGGGGATATTGATGATTACATCTTC
Alignments
lowQualScore : 1 1 555555555555555555555555555555 1111 2222222 3333333333333333333333 22222222 4444444444444 11 1111 111111
lowQualScore : 1 7 1 1 3 3 1 3 444444444444444444444444444444 1 5 1 5 11 2 1 777 0 0 1 77 0 44 44 7777777 22 2 3333 2 7 3 1 6666666 0 3 2 7 99999 0 3 666666666 3333 2 1 1 2 1 1 0 5 1111111111111111111111 5 2 5 4 77 55 44444444 8888888888888 33 7777 666666
lowQualScore : . . . . . . . . .............................. . . . . .. . . ... . . . .. . .. .. ....... .. . .... . . . . ....... . . . . ..... . . ......... .... . . . . . . . . ...................... . . . . .. .. ........ ............. .. .... ......
lowQualScore : 0 3 0 0 3 3 0 7 000000000000000000000000000000 0 0 0 1 22 9 7 888 1 8 8 99 4 66 66 7777777 22 9 1111 9 1 1 0 4444444 9 6 5 3 22222 5 6 333333333 0000 9 6 3 7 7 8 1 7 9999999999999999999999 7 7 7 3 99 33 22222222 3333333333333 00 4444 000000
consensus : NTTGCNATGAGGGAGTTTTNATTTTCAGTATNT-TT-CTGTTACTATGGAAACANATCGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--T---AGTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCAT-TTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-T-AGC-CAA---A-A---TTACAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T-GGTTGG--C---GTAGT--AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAACAATTA-GC-CAAAACA-TAAGGTGTCTCT
Reference ( family-9 ) : NTTGCNATGAGGGAGTTTTNATTTTCAGTATNT-TT-CTGTTACTATGGAAACANATCGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--T---AGTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCAT-TTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-T-AGC-CAA---A-A---TTACAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T-GGTTGG--C---GTAGT--AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAACAATTA-GC-CAAAACA-TAAGGTGTCTCT
gi|1 : AA-CTTCAAA-CTGTCAAAGATGATTTCATGA---AACTC-ATACTTA--TGCC--AG--CT--T---TGTTGTTAAGTGGTGC-ATTTTGCTGTGAG-GGAAATTTT--T-TTTTAGTAT--TTTT---CATATT-CCACGGAAAC-A-T-G-AGC-CAA---A-A---TTA-AAAGTTCTCCATTACAGGAGCA-TACTTCAAAAATCGTTCAAGATAATTTAATGA------GTGTACATGTCAAC-CAT-G--TGG--T---CTTAT--AGTAC-CTTTCAC-TATGAGAGAG--TTTTCAT--------TTTCAGTATTTGTTCTGTTACCATGGAAACAGTTA-GC-CAAAA-A-T---GTGTCTC
gi|1 : ggaactcaacagcaggtaaagtacaattctgttCTATGAGAGAGTTTTCATTTTCAGTATTTGTT-CTGTTACCATGGAAACAGTTAGCCAAA--------AATGTGTCT-------CCC-----TCTCTGCTGTACAA-CTCC--AACCCTT-AAGcctctctgctgtacaactccaacccttaagtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcaTGTACA-A--CTCC--AA--CC--CTTAAGTGGTCTAGTAGTGC-CTTTTGCAGTGAA-GTAG-TTTTTAT-TTTCAtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgcTGG--T---CTAGT--AGTGC-CTTTTGC-AGTGAAGTAG--TTTTTAT--------TTTCAA----------GTT----TCAAAACATCTATGTATAAAACACTACGGTGagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|11 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgctgtacaactccaacccttaagCTAGTAGTGT-CTTTTGCTATGTG-GGAG-TTTCCATGTTTAAGTgggctcctggtggagaatattgacgactaca
gi|12 : GTTTCCGGGGCACAA-CTACAATACATTTCCCGGTAACTTCAAGA---AATTTTTAACAAA--TGttcagaactcaaaatatctgactgaaatagcacatggcgggggatattgacgactacctcttct
gi|13 : GTGCACAACT-TC--AAGACC--T---AATGGTCGAGTAGTGG-CTTTTGCTGTG------G-TTTTCAaaagaataaaaactatctatcaaatatgtttttgccatttgaggg
gi|16 : TGC-CTTTTGGTATGTA-GAAT-TGTTCAT-GTTTA---------------TGTTACCTACGAAAC-A-AAT-AGC-CCA---A-A---TTACTGAATTCTCgaacatccaagtataatatcccatggtgtgggacattgacagcttgtg
gi|18 : TTATCTC-TGTTACCGTGGAAAA-A-A-T-A----AA---A-ATATTTGCAAAATGTACTGTTTCCGGAGTA-TAACTTTAAAAattactataaactg
gi|19 : taC-TGTTACCGTGGAAAC-A-AAT-AGT-TAACCAG-A---TTACCAAATTCTCTGTCTTTCGAGCA-TAACTTCAAAACT
gi|2 : TATAAGCTCCAAAACCTTTTTAGGTAACTTCACTA---AACTTTGTACACA--TGTC--AA--CC--T---CATAATCTAGTAGTGC-CATTTGGTATGTT-TGAG-TTTTCAT-TTTCAATA----TATTTTC-TGGTACCATGGAAACAA-A-T-AGC-AAA---A-A---TTACTAAATTCT------------CA-TAACTTTAAAACTGTTCAAGATAGTTTCGTGAATATTTGTATACATGTCAGT-C-T-AGTGGG--C---A-AGT--AGTTC-CTTTTGC-TCCGAAGGAGTTTTTTTATTTCCAGTATTT-------------GTTACCATGAAAACAATTA----CGAAACA-TAAGTTGTCTCT
gi|20 : tctatattaccttgacctttgtggataattgacgtagcgaacaacaTTTC-TGTTACCATAGAAAC-AGA-T-ATA-CAA---C-A---TTACAAAATTCACCGTTTTCGGGGCA-CAACTTAAAAACtagtatgaatggttgtttgatatattattcaaatcctgtacaaactttctaacacagtgtacatgtgttgttatatactcggtctg
gi|21 : TTTCCGGAACA-CAACTTCCAAACTTGTCATGGTACCTTCATGAAACGTTGCTCACATGTCAGC-
gi|23 : CTGTTTCTGAATCA-TTACTCCAAAACTGTTTATGGTAACACCACAAAAC--TGTGCACATa
gi|26 : aTTTCCTGAGC------TCCAAAACTATTCAAGGTAA-TTCATAAAGCTTTGTAa
gi|27 : aaAA---A-C---TTACAAAATTCACCGTTTCCGGAGTA-CAAGTCCAAAACa
gi|3 : gAGGGTAACTTCATGA---AACTTTGTTCAAA--TTTC--AA--CC--T---GATGATAAAGTAATGC-CTTTTGCTATGAT-CAAG-TTTT-AT-TTT--ATATTATTTTTTTC-TATTACCGTGGAAAC-A-A---------------------ATA------------TCCAGAGCA-CCACTCCAAAACTGTTCAAGGTAACTTCATGAAACTTTGTAAACATGTCAAC-C-T-AG-TGG--C---CTAGA--AGTAT-C-------------------------T--------TCT-------------GTTACCATGGAAACAAATA-GC-CAAGACA-
gi|3 : CAAGACAGTTACATGA---GACTTTGTAAACA--TGTC--TA--CCTAT---AGTGGTCAAGTAGT-T-TTTTTGTTGTTAGAAAAG-TTTTTAT-TTTCCGTA-----TCTTTC-TGTAACTATGGAAAC-ACA-T-CAC-CAA---A-A---gttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaagtttttattttccgtatctttctgtaactatggaaacacatcaccaaaacctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|3 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgccttttgctatgatcaagttttattttatattatttttttctattaccgtggaaacaaatatccagagcaccactccaaaactgttcaaggtaacttcatgaaactttgtaaacatgtcaacctagtggcctagaagtatcttctgttaccatggaaacaaatagcAGTTTTTATTTTCCGTATCT-TT-CTGTAACTATGGAAACACATCACCAAAACCTAATGAATG-GTCTGGTAGCCCCTTA-Tcctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|4 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgccttttgctatgatcaagttttattttatattatttttttctattaccgtggaaacaaatatccagagcaccactccaaaactgttcaaggtaacttcatgaaactttgtaaacatgtcaacctagtggcctagaagtatcttctgttaccatggaaacaaatagccaagacagttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaTTGCAATGAGGGAGTT--AATTTTCAATATGT-TTTCTGTTGCTATGAAAACAAATTGCCAAA---T--TGAATTTTTTT---------TTA-TGTTTCCGGTGTACAA-CCACAAAGCAATTCAAGGTAACTTCACGG---AACTCTGTACACA--TGTC--AA--CC--T---GGAGGCCTAGTAATGCGTTTTTGCTATGAG-GGAG-TTTTTAA-TGTCAACAT--TTTTTTTC-TGTTACCATGAAAAC-A-A-T-AGC-CAA---A-A---TGACAAAATTCACCGTTTCCGGAGCA-CAACTCCAAAATTGTTCAAGGTAACATCACGAAACTTTGTTTACATGTCAAC-CATGGGTTGAGTT---GTAGT--AGTGC-CTTTTGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATCAAAACA--TA-GT-AAAAACA-AGAAATGTCACTtctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|5 : aTTTCAGGTGTATAT-TTCTAAAACCTTTCTATATAACTTTGCAA---AA-TTTGTACAAA--GGTC--AA--CC----------------TAGTG---------------------TTTTCAT-TCACAGT-----TTTATTC-TGTAACTATGCAAAC-A-A-TTAGCACAG---ATA---T--CGAAATTCTGTTTTTTCGGTGCA-CAATTTCCGAAC
gi|5 : ccaGTGCACAA-TTTCCGAA--CC--T---AGTGATTCCGTAGTGC-CTTTTACTGTGTG-GAAA--TTTGAT-TTTCActagtgattccgtagtgccttttactgtgtggaaatttgattttcatgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|6 : ccatttcaggtgtatatttctaaaacctttctatataactttgcaaaatttgtacaaaggtcaacctagtgttttcattcacagttttattctgtaactatgcaaacaattagcacagatatcgaaattctgttttttcgTTCTTGAATACAA-TTTTAAA-CTGTTCAG-----CTTCATGT---AACTTTGTATTCA--TGTC--AA--CC--T---AGTTGTGTATCAGTAC-CAGTTGCTATGAG-TGAG-TTTTAAT-TTTCAA-----TTATTTTC-TGTTTCCATGGAAACAA-A-T-AGC-CAA---A-A---TTACAAAATTCGCTTTTTCCAGAGTA-CAACT-CGAAACAGTACATGGTATTTCCACAAAACTTTCCATACATG-CTAC-C-T--ATTGA--TCTGGTAATTAAATGC-CTTTCACTTAT-AGGGAG--TTTCCtgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|7 : TTACTGTTTCCGGAGCACAT-CTACAAAATCCCTAAAGGTAACTTCTTGATATAAGTT----CACT--TGTC--CG--GC--T---GATAGTGAAGAAGTGC-CTATAGCTGTGAT-TGAG-TTTTGAT-TT
gi|8 : aa--AA--GC--T---AGTGGCCCAGTAGTGC-TTTTTGCAGT----GGAT-TTTTTTT-TTTAAGT
gi|9 : ttcacaactccaaTTCCGGAGCATCAA-TTGAAAATTGTTGAGGATAATTTCAAGAAACTAAGCATACATATCCACTC-T-TGTTGA--C----TA----AGTGTATTTTTGC-TATTGGAGAG--TCT--AT--------TTT-------------ACTAttcaaaacatccaagtaaaataccccatggtggggatattgacggccacatt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTCCGTCGCACTTCTCCAAAAACTAATTTGCTGTAAATTAGTTCTTATTTTCAATTTTCAGAACATTTAAATAAAATACCCCGTGGTGGGGGTAATTGACGACTACGT
Unaligned ( gi|14 ): GGTGCACACTCCAGAACCTAGTGAAGTAGTTTCTATTTTTAAGTTTCAGAACGTCTAAAAAAATATCCCATGGCGGAGGATATTGATGACTACATCT
Unaligned ( gi|15 ): TACTTTGAAAGAGTTTTCATTTTCAGGTTTCACAACTCGGAACATCTGAGAAAAATACCCCATGGTGGGGGATATTGATGAGTAAATCTTC
Unaligned ( gi|17 ): TTTCAAATTTCAGAACATCGCAATAAAAGATCCCATGATAAGACCAAAGGCGAGGGATACTGACGATTACGTCCT
Unaligned ( gi|22 ): CAGAACTCAAAATATCTGAGTATCTACCCCATAATAGGGGATATTGATGAGTTCTTTTTCTTG
Unaligned ( gi|24 ): TCAGATCTCAGAAACTGTAAGTAAAATACCTCATGGTAGGCAAAATTGACAACTGTCTT
Unaligned ( gi|25 ): TCTGAACATCTGAGTAAAATACCCTATGACTGGGGATATTGATGATTACATCTTC
Alignments
lowQualScore : 1 1 555555555555555555555555555555 1111 2222222 3333333333333333333333 22222222 4444444444444 11 1111 111111
lowQualScore : 1 7 1 1 3 3 1 3 444444444444444444444444444444 1 5 1 5 11 2 1 777 0 0 1 77 0 44 44 7777777 22 2 3333 2 7 3 1 6666666 0 3 2 7 99999 0 3 666666666 3333 2 1 1 2 1 1 0 5 1111111111111111111111 5 2 5 4 77 55 44444444 8888888888888 33 7777 666666
lowQualScore : . . . . . . . . .............................. . . . . .. . . ... . . . .. . .. .. ....... .. . .... . . . . ....... . . . . ..... . . ......... .... . . . . . . . . ...................... . . . . .. .. ........ ............. .. .... ......
lowQualScore : 0 3 0 0 3 3 0 7 000000000000000000000000000000 0 0 0 1 22 9 7 888 1 8 8 99 4 66 66 7777777 22 9 1111 9 1 1 0 4444444 9 6 5 3 22222 5 6 333333333 0000 9 6 3 7 7 8 1 7 9999999999999999999999 7 7 7 3 99 33 22222222 3333333333333 00 4444 000000
consensus : NTTGCNATGAGGGAGTTTTNATTTTCAGTATNT-TT-CTGTTACTATGGAAACANATCGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--T---AGTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCAT-TTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-T-AGC-CAA---A-A---TTACAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T-GGTTGG--C---GTAGT--AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAACAATTA-GC-CAAAACA-TAAGGTGTCTCT
Reference ( family-9 ) : NTTGCNATGAGGGAGTTTTNATTTTCAGTATNT-TT-CTGTTACTATGGAAACANATCGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--T---AGTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCAT-TTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-T-AGC-CAA---A-A---TTACAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T-GGTTGG--C---GTAGT--AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAACAATTA-GC-CAAAACA-TAAGGTGTCTCT
gi|1 : AA-CTTCAAA-CTGTCAAAGATGATTTCATGA---AACTC-ATACTTA--TGCC--AG--CT--T---TGTTGTTAAGTGGTGC-ATTTTGCTGTGAG-GGAAATTTT--T-TTTTAGTAT--TTTT---CATATT-CCACGGAAAC-A-T-G-AGC-CAA---A-A---TTA-AAAGTTCTCCATTACAGGAGCA-TACTTCAAAAATCGTTCAAGATAATTTAATGA------GTGTACATGTCAAC-CAT-G--TGG--T---CTTAT--AGTAC-CTTTCAC-TATGAGAGAG--TTTTCAT--------TTTCAGTATTTGTTCTGTTACCATGGAAACAGTTA-GC-CAAAA-A-T---GTGTCTC
gi|1 : ggaactcaacagcaggtaaagtacaattctgttCTATGAGAGAGTTTTCATTTTCAGTATTTGTT-CTGTTACCATGGAAACAGTTAGCCAAA--------AATGTGTCT-------CCC-----TCTCTGCTGTACAA-CTCC--AACCCTT-AAGcctctctgctgtacaactccaacccttaagtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcaTGTACA-A--CTCC--AA--CC--CTTAAGTGGTCTAGTAGTGC-CTTTTGCAGTGAA-GTAG-TTTTTAT-TTTCAtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgcTGG--T---CTAGT--AGTGC-CTTTTGC-AGTGAAGTAG--TTTTTAT--------TTTCAA----------GTT----TCAAAACATCTATGTATAAAACACTACGGTGagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|11 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgctgtacaactccaacccttaagCTAGTAGTGT-CTTTTGCTATGTG-GGAG-TTTCCATGTTTAAGTgggctcctggtggagaatattgacgactaca
gi|12 : GTTTCCGGGGCACAA-CTACAATACATTTCCCGGTAACTTCAAGA---AATTTTTAACAAA--TGttcagaactcaaaatatctgactgaaatagcacatggcgggggatattgacgactacctcttct
gi|13 : GTGCACAACT-TC--AAGACC--T---AATGGTCGAGTAGTGG-CTTTTGCTGTG------G-TTTTCAaaagaataaaaactatctatcaaatatgtttttgccatttgaggg
gi|16 : TGC-CTTTTGGTATGTA-GAAT-TGTTCAT-GTTTA---------------TGTTACCTACGAAAC-A-AAT-AGC-CCA---A-A---TTACTGAATTCTCgaacatccaagtataatatcccatggtgtgggacattgacagcttgtg
gi|18 : TTATCTC-TGTTACCGTGGAAAA-A-A-T-A----AA---A-ATATTTGCAAAATGTACTGTTTCCGGAGTA-TAACTTTAAAAattactataaactg
gi|19 : taC-TGTTACCGTGGAAAC-A-AAT-AGT-TAACCAG-A---TTACCAAATTCTCTGTCTTTCGAGCA-TAACTTCAAAACT
gi|2 : TATAAGCTCCAAAACCTTTTTAGGTAACTTCACTA---AACTTTGTACACA--TGTC--AA--CC--T---CATAATCTAGTAGTGC-CATTTGGTATGTT-TGAG-TTTTCAT-TTTCAATA----TATTTTC-TGGTACCATGGAAACAA-A-T-AGC-AAA---A-A---TTACTAAATTCT------------CA-TAACTTTAAAACTGTTCAAGATAGTTTCGTGAATATTTGTATACATGTCAGT-C-T-AGTGGG--C---A-AGT--AGTTC-CTTTTGC-TCCGAAGGAGTTTTTTTATTTCCAGTATTT-------------GTTACCATGAAAACAATTA----CGAAACA-TAAGTTGTCTCT
gi|20 : tctatattaccttgacctttgtggataattgacgtagcgaacaacaTTTC-TGTTACCATAGAAAC-AGA-T-ATA-CAA---C-A---TTACAAAATTCACCGTTTTCGGGGCA-CAACTTAAAAACtagtatgaatggttgtttgatatattattcaaatcctgtacaaactttctaacacagtgtacatgtgttgttatatactcggtctg
gi|21 : TTTCCGGAACA-CAACTTCCAAACTTGTCATGGTACCTTCATGAAACGTTGCTCACATGTCAGC-
gi|23 : CTGTTTCTGAATCA-TTACTCCAAAACTGTTTATGGTAACACCACAAAAC--TGTGCACATa
gi|26 : aTTTCCTGAGC------TCCAAAACTATTCAAGGTAA-TTCATAAAGCTTTGTAa
gi|27 : aaAA---A-C---TTACAAAATTCACCGTTTCCGGAGTA-CAAGTCCAAAACa
gi|3 : gAGGGTAACTTCATGA---AACTTTGTTCAAA--TTTC--AA--CC--T---GATGATAAAGTAATGC-CTTTTGCTATGAT-CAAG-TTTT-AT-TTT--ATATTATTTTTTTC-TATTACCGTGGAAAC-A-A---------------------ATA------------TCCAGAGCA-CCACTCCAAAACTGTTCAAGGTAACTTCATGAAACTTTGTAAACATGTCAAC-C-T-AG-TGG--C---CTAGA--AGTAT-C-------------------------T--------TCT-------------GTTACCATGGAAACAAATA-GC-CAAGACA-
gi|3 : CAAGACAGTTACATGA---GACTTTGTAAACA--TGTC--TA--CCTAT---AGTGGTCAAGTAGT-T-TTTTTGTTGTTAGAAAAG-TTTTTAT-TTTCCGTA-----TCTTTC-TGTAACTATGGAAAC-ACA-T-CAC-CAA---A-A---gttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaagtttttattttccgtatctttctgtaactatggaaacacatcaccaaaacctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|3 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgccttttgctatgatcaagttttattttatattatttttttctattaccgtggaaacaaatatccagagcaccactccaaaactgttcaaggtaacttcatgaaactttgtaaacatgtcaacctagtggcctagaagtatcttctgttaccatggaaacaaatagcAGTTTTTATTTTCCGTATCT-TT-CTGTAACTATGGAAACACATCACCAAAACCTAATGAATG-GTCTGGTAGCCCCTTA-Tcctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|4 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgccttttgctatgatcaagttttattttatattatttttttctattaccgtggaaacaaatatccagagcaccactccaaaactgttcaaggtaacttcatgaaactttgtaaacatgtcaacctagtggcctagaagtatcttctgttaccatggaaacaaatagccaagacagttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaTTGCAATGAGGGAGTT--AATTTTCAATATGT-TTTCTGTTGCTATGAAAACAAATTGCCAAA---T--TGAATTTTTTT---------TTA-TGTTTCCGGTGTACAA-CCACAAAGCAATTCAAGGTAACTTCACGG---AACTCTGTACACA--TGTC--AA--CC--T---GGAGGCCTAGTAATGCGTTTTTGCTATGAG-GGAG-TTTTTAA-TGTCAACAT--TTTTTTTC-TGTTACCATGAAAAC-A-A-T-AGC-CAA---A-A---TGACAAAATTCACCGTTTCCGGAGCA-CAACTCCAAAATTGTTCAAGGTAACATCACGAAACTTTGTTTACATGTCAAC-CATGGGTTGAGTT---GTAGT--AGTGC-CTTTTGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATCAAAACA--TA-GT-AAAAACA-AGAAATGTCACTtctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|5 : aTTTCAGGTGTATAT-TTCTAAAACCTTTCTATATAACTTTGCAA---AA-TTTGTACAAA--GGTC--AA--CC----------------TAGTG---------------------TTTTCAT-TCACAGT-----TTTATTC-TGTAACTATGCAAAC-A-A-TTAGCACAG---ATA---T--CGAAATTCTGTTTTTTCGGTGCA-CAATTTCCGAAC
gi|5 : ccaGTGCACAA-TTTCCGAA--CC--T---AGTGATTCCGTAGTGC-CTTTTACTGTGTG-GAAA--TTTGAT-TTTCActagtgattccgtagtgccttttactgtgtggaaatttgattttcatgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|6 : ccatttcaggtgtatatttctaaaacctttctatataactttgcaaaatttgtacaaaggtcaacctagtgttttcattcacagttttattctgtaactatgcaaacaattagcacagatatcgaaattctgttttttcgTTCTTGAATACAA-TTTTAAA-CTGTTCAG-----CTTCATGT---AACTTTGTATTCA--TGTC--AA--CC--T---AGTTGTGTATCAGTAC-CAGTTGCTATGAG-TGAG-TTTTAAT-TTTCAA-----TTATTTTC-TGTTTCCATGGAAACAA-A-T-AGC-CAA---A-A---TTACAAAATTCGCTTTTTCCAGAGTA-CAACT-CGAAACAGTACATGGTATTTCCACAAAACTTTCCATACATG-CTAC-C-T--ATTGA--TCTGGTAATTAAATGC-CTTTCACTTAT-AGGGAG--TTTCCtgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|7 : TTACTGTTTCCGGAGCACAT-CTACAAAATCCCTAAAGGTAACTTCTTGATATAAGTT----CACT--TGTC--CG--GC--T---GATAGTGAAGAAGTGC-CTATAGCTGTGAT-TGAG-TTTTGAT-TT
gi|8 : aa--AA--GC--T---AGTGGCCCAGTAGTGC-TTTTTGCAGT----GGAT-TTTTTTT-TTTAAGT
gi|9 : ttcacaactccaaTTCCGGAGCATCAA-TTGAAAATTGTTGAGGATAATTTCAAGAAACTAAGCATACATATCCACTC-T-TGTTGA--C----TA----AGTGTATTTTTGC-TATTGGAGAG--TCT--AT--------TTT-------------ACTAttcaaaacatccaagtaaaataccccatggtggggatattgacggccacatt
blockSeqs : A T T C . T C C ACCTAATGAATGGTCTGGTAGCCCCTTA G G C A CC C A TAT A AC CG GA CTTAA CT G AGAA . T G C ATATTAT . T A AAT A AATAT ACTG T T A T T T T ATGGGTTGAGTTGTAGT A T T G TT TT TTCCAGTA CAA TC TGTA CTACGG
blockSeqs : . A G . . A T TTGAATTTTTTTTTA T . A A AT T C . C A . . TATA CT . AAG . C . A ACATT . G A AAT . CCAGA TCTG . T T C T G . TATTGATCTGGTAATTA . T . G . TT . . AT GC TAAGT
blockSeqs : T . C A CT C T . C . . . TA CG . TGG . C . T ATA . G . GAT . ATA ACCG . T T C C T . TAGTGGGCAAGT . T . G . TC . . AA GT AGAAA
blockSeqs : A . A G AA C T . A . . . TC CT . TAG . C . C GTA . A . CAT . AA ACCG . T A C T T . TAGTGGCCTAGA . C . T . CC . . . .
blockSeqs : A . C A CT C C . C . . . TG AA . TTT . C . C GT . A . ATT . AA ACCG . T A C T T . TTGTTGACTA . T . . . . . .
blockSeqs : . T A TG C C . C . . . TG CA . ATC . T . C AT . G . AT . CA TGTT . C A T C T . . . . . . .
blockSeqs : . A . CC A T . A . . . TA CT . AGG . T . C . . A . AT . AC GCTT . C T T C T
blockSeqs : . T . C . . . TA TC . TGG . C . C . A . AT . AA T . C G . A .
blockSeqs : C . . . TG GT . AGT . G . C . A . AT . AA . . C
blockSeqs : C . . . TA GA . ATT . A . A . A . A . AA . C
blockSeqs : . . . . . CC . G . G . . . . T
blockSeqs : . . . . T . . T
blockSeqs : . . . . . .
blockSeqCons : ATA**** AT*** TAGTNGNCTAGN********** *************
originalCons : NTTGCNATGAGGGAGTTTTNATTTTCAGTATNT-TT-CTGTTACTATGGAAACANATCGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--T---AGTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCAT-TTTCAGTAT--TTTTTTTC-TGTTACCGTGGAAAC-A-A-T-AGC-CAA---A-A---TTACAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T-GGTTGG--C---GTAGT--AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAACAATTA-GC-CAAAACA-TAAGGTGTCTCT
finalCons : NTTGCNATGAGGGAGTTTTNATTTTCAGTATNT-TT-CTGTTACTATGGAAACANATCGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--T---AGTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCAT-TTTCAATA----TTTTTTC-TGTTACCGTGGAAAC-AAT---AGC-CAA---A-A---TTACAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-CTAGTNGNCTAGN----------AGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAACAATTA-GC-CAAAACA-TAAGGTGTCTCT
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTCCGTCGCACTTCTCCAAAAACTAATTTGCTGTAAATTAGTTCTTATTTTCAATTTTCAGAACATTTAAATAAAATACCCCGTGGTGGGGGTAATTGACGACTACGT
Unaligned ( gi|14 ): GGTGCACACTCCAGAACCTAGTGAAGTAGTTTCTATTTTTAAGTTTCAGAACGTCTAAAAAAATATCCCATGGCGGAGGATATTGATGACTACATCT
Unaligned ( gi|15 ): TACTTTGAAAGAGTTTTCATTTTCAGGTTTCACAACTCGGAACATCTGAGAAAAATACCCCATGGTGGGGGATATTGATGAGTAAATCTTC
Unaligned ( gi|17 ): TTTCAAATTTCAGAACATCGCAATAAAAGATCCCATGATAAGACCAAAGGCGAGGGATACTGACGATTACGTCCT
Unaligned ( gi|22 ): CAGAACTCAAAATATCTGAGTATCTACCCCATAATAGGGGATATTGATGAGTTCTTTTTCTTG
Unaligned ( gi|24 ): TCAGATCTCAGAAACTGTAAGTAAAATACCTCATGGTAGGCAAAATTGACAACTGTCTT
Unaligned ( gi|25 ): TCTGAACATCTGAGTAAAATACCCTATGACTGGGGATATTGATGATTACATCTTC
Alignments
lowQualScore : 1 1 555555555555555555555555555555 1111 1111111 111 22222222 111111 22222222 4444444444444 11 1111 111111
lowQualScore : 1 7 1 1 3 3 1 3 444444444444444444444444444444 1 5 1 5 11 2 1 777 0 0 1 77 0 44 44 44 555 22 2 3333 2 7 2222222 55 2 3 555 0 3 77777777 3 2 44 2 1 1 2 1 1 0 5 99999999 1 6 777777 5 2 5 4 77 55 44444444 8888888888888 33 7777 666666
lowQualScore : . . . . . . . . .............................. . . . . .. . . ... . . . .. . .. .. .. ... .. . .... . . ....... .. . . ... . . ........ . . .. . . . . . . . . ........ . . ...... . . . . .. .. ........ ............. .. .... ......
lowQualScore : 0 3 0 0 3 3 0 7 000000000000000000000000000000 0 0 0 1 22 9 7 888 1 8 8 99 4 66 66 66 888 22 9 1111 9 1 6666666 55 5 6 222 5 6 00000000 6 3 66 9 6 3 7 7 8 1 0 00000000 0 6 333333 7 7 7 3 99 33 22222222 3333333333333 00 4444 000000
consensus : NTTGCNATGAGGGAGTTTTNATTTTCAGTATNT-TT-CTGTTACTATGGAAACANATCGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--T---AGTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCATTTTCAATATT----TT--TTCTGTTACCGTGGAAAC-A-A-TAGC-CAA---AA---TTA-CAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T------AGTGGNCTAG-----TAGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAACAATTA-GC-CAAAACA-TAAGGTGTCTCT
Reference ( family-9 ) : NTTGCNATGAGGGAGTTTTNATTTTCAGTATNT-TT-CTGTTACTATGGAAACANATCGCCAAA---T--TGAATGTGTCT-------CCTTA-TGTTTCCGGNGTACAA-CTNCAAAACCNTTCAAGGTAACTTCACGA---AACTTTGTACACA--TGTC--AA--CC--T---AGTGGTCNAGTAGTGC-CTTTTGCTGTGAG-GGAG-TTTTCATTTTCAATATT----TT--TTCTGTTACCGTGGAAAC-A-A-TAGC-CAA---AA---TTA-CAAAATTCNCCGTTTCCGGAGCA-CAACTCCAAAACTGTTCAAGGTAACTTCACGAAACTTTGTATACATGTCAAC-C-T------AGTNGNCTAG-----NAGTGC-CTTTCGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATGAAAACAATTA-GC-CAAAACA-TAAGGTGTCTCT
gi|1 : AA-CTTCAAA-CTGTCAAAGATGATTTCATGA---AACTC-ATACTTA--TGCC--AG--CT--T---TGTTGTTAAGTGGTGC-ATTTTGCTGTGAG-GGAAATTTT--TTTTTAGTATT----TT--TCATATT-CCACGGAAAC-A-T-GAGC-CAA---AA---TTA--AAAGTTCTCCATTACAGGAGCA-TACTTCAAAAATCGTTCAAGATAATTTAATGA------GTGTACATGTCAAC-C-A------TGTGGTCTTA-----TAGTAC-CTTTCAC-TATGAGAGAG--TTTTCAT--------TTTCAGTATTTGTTCTGTTACCATGGAAACAGTTA-GC-CAAAA-A-T---GTGTCTC
gi|1 : ggaactcaacagcaggtaaagtacaattctgttCTATGAGAGAGTTTTCATTTTCAGTATTTGTT-CTGTTACCATGGAAACAGTTAGCCAAA--------AATGTGTCT-------CCC-----TCTCTGCTGTACAA-CTCC--AACCCTT-AAGcctctctgctgtacaactccaacccttaagtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcaTGTACA-A--CTCC--AA--CC--CTTAAGTGGTCTAGTAGTGC-CTTTTGCAGTGAA-GTAG-TTTTTATTTTCAAtggtctagtagtgccttttgcagtgaagtagtttttattttcaagtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|1 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgcCAAC-C-CTTA---AGTGGTCTAG-----TAGTGC-CTTTTGC-AGTGAAGTAG--TTTTTAT--------TTTCAA----------GTT----TCAAAACATCTATGTATAAAACACTACGGTGgtttcaaaacatctatgtataaaacactacggtggggctcctggtggagaatattgacgactaca
gi|11 : ggaactcaacagcaggtaaagtacaattctgttaacttcaaactgtcaaagatgatttcatgaaactcatacttatgccagctttgttgttaagtggtgcattttgctgtgagggaaatttttttttagtatttttcatattccacggaaacatgagccaaaattaaaagttctccattacaggagcatacttcaaaaatcgttcaagataatttaatgagtgtacatgtcaaccatgtggtcttatagtacctttcactatgagagagttttcattttcagtatttgttctgttaccatggaaacagttagccaaaaatgtgtctccctctctgctgtacaactcCTAGTAGTGT-CTTTTGCTATGTG-GGAG-TTTCCATGTTTAAgggctcctggtggagaatattgacgactaca
gi|12 : GTTTCCGGGGCACAA-CTACAATACATTTCCCGGTAACTTCAAGA---AATTTTTAACAAA--TGgtttcagaactcaaaatatctgactgaaatagcacatggcgggggatattgacgactacctcttct
gi|13 : GTGCACAACT-TC--AAGACC--T---AATGGTCGAGTAGTGG-CTTTTGCTGTG------G-TTTTCAaaagaataaaaactatctatcaaatatgtttttgccatttgaggg
gi|16 : TGC-CTTTTGGTATGTA-GAAT-TGTTCATGTTTA----------------TGTTACCTACGAAACAA-A-TAGC-CCA---AA---TTA-CTGAATTCTCgaacatccaagtataatatcccatggtgtgggacattgacagcttgtg
gi|18 : TATT----AT--CTCTGTTACCGTGGAAAA-A-A-TA----AA---AATATTTG-CAAAATGTACTGTTTCCGGAGTA-TAACTTTAAAAattactataaactg
gi|19 : CTGTTACCGTGGAAAC-A-AATAGT-TAACCAGA---TTA-CCAAATTCTCTGTCTTTCGAGCA-TAACTTCAAAACT
gi|2 : TATAAGCTCCAAAACCTTTTTAGGTAACTTCACTA---AACTTTGTACACA--TGTC--AA--CC--T---CATAATCTAGTAGTGC-CATTTGGTATGTT-TGAG-TTTTCATTTTCAATATA----TT--TTCTGGTACCATGGAAAC-A-AATAGC-AAA---AA---TTA-CTAAATTCTC------------A-TAACTTTAAAACTGTTCAAGATAGTTTCGTGAATATTTGTATACATGTCAGT-C-T------AGTGGGCAAG-----TAGTTC-CTTTTGC-TCCGAAGGAGTTTTTTTATTTCCAGTATTT-------------GTTACCATGAAAACAATTA----CGAAACA-TAAGTTGTCTCT
gi|20 : tctatattaccttgacctttgtggataattgacgtagcgaacaacaT--TTCTGTTACCATAGAAAC-AGA-TATA-CAA---CA---TTA-CAAAATTCACCGTTTTCGGGGCA-CAACTTAAAAACtagtatgaatggttgtttgatatattattcaaatcctgtacaaactttctaacacagtgtacatgtgttgttatatactcggtctg
gi|21 : TTTCCGGAACA-CAACTTCCAAACTTGTCATGGTACCTTCATGAAACGTTGCTCACATGTCAGC-
gi|23 : CTGTTTCTGAATCA-TTACTCCAAAACTGTTTATGGTAACACCACAAAAC--TGTGCACATa
gi|26 : aTTTCCTGAGC------TCCAAAACTATTCAAGGTAA-TTCATAAAGCTTTGTAa
gi|27 : aaAA---AC---TTA-CAAAATTCACCGTTTCCGGAGTA-CAAGTCCAAAACa
gi|3 : gAGGGTAACTTCATGA---AACTTTGTTCAAA--TTTC--AA--CC--T---GATGATAAAGTAATGC-CTTTTGCTATGAT-CAAG-TTTT-ATTTT--ATATTATTTTT--TTCTATTACCGTGGAAAC-A-A-------------------A-TA------------TCCAGAGCA-CCACTCCAAAACTGTTCAAGGTAACTTCATGAAACTTTGTAAACATGTCAAC-C-T------AGTGGCCTAG-----AAGTAT-C-------------------------T--------TCT-------------GTTACCATGGAAACAAATA-GC-CAAGACA-
gi|3 : CAAGACAGTTACATGA---GACTTTGTAAACA--TGTC--TA--CCTAT---AGTGGTCAAGTAGT-T-TTTTTGTTGTTAGAAAAG-TTTTTATTTTCCGTA-T----CT--TTCTGTAACTATGGAAAC-ACA-TCAC-CAA---AA---gttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaagtttttattttccgtatctttctgtaactatggaaacacatcaccaaaacctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|3 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgccttttgctatgatcaagttttattttatattatttttttctattaccgtggaaacaaatatccagagcaccactccaaaactgttcaaggtaacttcatgaaactttgtaaacatgtcaacctagtggcctagaagtatcttctgttaccatggaaacaaatagcAGTTTTTATTTTCCGTATCT-TT-CTGTAACTATGGAAACACATCACCAAAACCTAATGAATG-GTCTGGTAGCCCCTTA-Tcctaatgaatggtctggtagccccttattctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|4 : agggtaacttcatgaaactttgttcaaatttcaacctgatgataaagtaatgccttttgctatgatcaagttttattttatattatttttttctattaccgtggaaacaaatatccagagcaccactccaaaactgttcaaggtaacttcatgaaactttgtaaacatgtcaacctagtggcctagaagtatcttctgttaccatggaaacaaatagccaagacagttacatgagactttgtaaacatgtctacctatagtggtcaagtagtttttttgttgttagaaaTTGCAATGAGGGAGTT--AATTTTCAATATGT-TTTCTGTTGCTATGAAAACAAATTGCCAAA---T--TGAATTTTTTT---------TTA-TGTTTCCGGTGTACAA-CCACAAAGCAATTCAAGGTAACTTCACGG---AACTCTGTACACA--TGTC--AA--CC--T---GGAGGCCTAGTAATGCGTTTTTGCTATGAG-GGAG-TTTTTAATGTCAACATT----TTTTTTCTGTTACCATGAAAAC-A-A-TAGC-CAA---AA---TGA-CAAAATTCACCGTTTCCGGAGCA-CAACTCCAAAATTGTTCAAGGTAACATCACGAAACTTTGTTTACATGTCAAC-CATGGGTTGAGTTG--TAG-----TAGTGC-CTTTTGC-TATGAGGGAG--TTTTCAT--------TTT-------------GTTACCATCAAAACA--TA-GT-AAAAACA-AGAAATGTCACTtctgtaaagtagttctcagcatagtctacactgtttcactgtatatgtgtatgtctg
gi|5 : aTTTCAGGTGTATAT-TTCTAAAACCTTTCTATATAACTTTGCAA---AA-TTTGTACAAA--GGTC--AA--CC--T---AGTG--------------TTTT------------------CATTCACAGT-TT----TA--TTCTGTAACTATGCAAAC-A-ATTAGCACAG---A-----TATCGAAATTCTGTTTTTTCGGTGCA-CAATTTCCGAAC
gi|5 : ccaGTGCACAA-TTTCCGAA--CC--T---AGTGATTCCGTAGTGC-CTTTTACTGTGTG-GAAA--TTTGATTTTCActagtgattccgtagtgccttttactgtgtggaaatttgattttcatgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|6 : ccatttcaggtgtatatttctaaaacctttctatataactttgcaaaatttgtacaaaggtcaacctagtgttttcattcacagttttattctgtaactatgcaaacaattagcacagatatcgaaattctgttttttcgTTCTTGAATACAA-TTTTAAA-CTGTTCAG-----CTTCATGT---AACTTTGTATTCA--TGTC--AA--CC--T---AGTTGTGTATCAGTAC-CAGTTGCTATGAG-TGAG-TTTTAATTTTCAAT-TA----TT--TTCTGTTTCCATGGAAAC-A-AATAGC-CAA---AA---TTA-CAAAATTCGCTTTTTCCAGAGTA-CAACT-CGAAACAGTACATGGTATTTCCACAAAACTTTCCATACATG-CTAC-C-T------ATTGATCTGGTAATTAAATGC-CTTTCACTTAT-AGGGAG--TTTCCtgattcagactaggataattaatgtaaaatgtcctattgcgggggatattgatacccacattttc
gi|7 : TTACTGTTTCCGGAGCACAT-CTACAAAATCCCTAAAGGTAACTTCTTGATATAAGTT----CACT--TGTC--CG--GC--T---GATAGTGAAGAAGTGC-CTATAGCTGTGAT-TGAG-TTTTGATTT
gi|8 : aa--AA--GC--T---AGTGGCCCAGTAGTGC-TTTTTGCAGT----GGAT-TTTTT-TTTTTAA
gi|9 : ttcacaactccaaTTCCGGAGCATCAA-TTGAAAATTGTTGAGGATAATTTCAAGAAACTAAGCATACATATCCACTC-T------TGTTGACTA-------AGTGTATTTTTGC-TATTGGAGAG--TCT--AT--------TTT-------------ACTAgtttcaaaacatccaagtaaaataccccatggtggggatattgacggccacatt
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTCCGTCGCACTTCTCCAAAAACTAATTTGCTGTAAATTAGTTCTTATTTTCAATTTTCAGAACATTTAAATAAAATACCCCGTGGTGGGGGTAATTGACGACTACGT
Unaligned ( gi|14 ): GGTGCACACTCCAGAACCTAGTGAAGTAGTTTCTATTTTTAAGTTTCAGAACGTCTAAAAAAATATCCCATGGCGGAGGATATTGATGACTACATCT
Unaligned ( gi|15 ): TACTTTGAAAGAGTTTTCATTTTCAGGTTTCACAACTCGGAACATCTGAGAAAAATACCCCATGGTGGGGGATATTGATGAGTAAATCTTC
Unaligned ( gi|17 ): TTTCAAATTTCAGAACATCGCAATAAAAGATCCCATGATAAGACCAAAGGCGAGGGATACTGACGATTACGTCCT
Unaligned ( gi|22 ): CAGAACTCAAAATATCTGAGTATCTACCCCATAATAGGGGATATTGATGAGTTCTTTTTCTTG
Unaligned ( gi|24 ): TCAGATCTCAGAAACTGTAAGTAAAATACCTCATGGTAGGCAAAATTGACAACTGTCTT
Unaligned ( gi|25 ): TCTGAACATCTGAGTAAAATACCCTATGACTGGGGATATTGATGATTACATCTTC