lowQualScore : 1111 1 222222 1 11 333333333333 222222 11 777777777777777777777 3333 1 111 111 11111 55555555 2 111111 1111 7777777777777777777777777 111111111111111111 222 111 11 11 1111111 11 555555 1 1111111 111 1111 1 333333333333333 11 33333333 11111 333333333333 222222222222222222222 111 1 1 11111 11 1111
lowQualScore : 4444 1 9 999999 99 0 5 3 22 55 6 1 6 888 3 3 3 444444444444 99 3 5 3 6 333333 6 44 0 444444444444444444444 2 0 7777 44 3 1 111 3 1 6 22 000 5 5 5 77 3 88888 2 66 99999999 2 3 5 5 2 5 0 222222 0000 0 3 1111111111111111111111111 555555555555555555 555 4 777 44 00 4 8888888 4 00 444444 5 666 3 5 66 8888888 000 2 2222 888 2 0 888888888888888 77 0 00000000 2 2 00000 111111111111 222222222222222222222 3 9999 9999 3 888 5 5 4 2 777 0 11111 777 1 77 22 4 66 0000 66 1 6
lowQualScore : .... . . ...... .. . . . .. .. . . . ... . . . ............ .. . . . . ...... . .. . ..................... . . .... .. . . ... . . . .. ... . . . .. . ..... . .. ........ . . . . . . . ...... .... . . ......................... .................. ... . ... .. .. . ....... . .. ...... . ... . . .. ....... ... . .... ... . . ............... .. . ........ . . ..... ............ ..................... . .... .... . ... . . . . ... . ..... ... . .. .. . .. .... .. . .
lowQualScore : 2222 0 0 333333 22 7 0 2 33 00 7 0 2 888 2 7 2 222222222222 22 5 0 2 4 000000 2 00 8 000000000000000000000 2 8 0000 66 2 0 888 2 7 7 88 000 7 0 0 99 5 22222 7 44 11111111 1 0 7 7 9 7 6 111111 8888 1 4 0000000000000000000000000 555555555555555555 111 0 666 00 66 4 9999999 4 66 666666 0 444 8 3 99 4444444 000 1 1111 222 2 5 999999999999999 33 1 33333333 6 7 00000 888888888888 444444444444444444444 6 6666 2222 6 888 2 0 4 2 888 1 11111 888 1 00 22 4 11 6666 99 0 7
consensus : ACGAAATACAAGTT----AAGAAATAAAAAGGAACTTAATTTAA-CA-TTAACAATGTGTT--TGTAGAAAATGTTACCATTCAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACCAAA-ATATGTGCCAAATTAAACTNAAAA-ATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAACA--TATGATATGAAANTATTGTTTTACAATGCCTACATAA------TGTCNACATTTGNTTATTGTTGTATTGTTT--GG-GAAAACGGTAAACATATACAAAATACAATATATATA-ATCTCAGAAAAGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTG-CA--ATGGCTTCCATTTTCCAAAA-GATGTT-TT-TTATCACACTGCTGTNTTAGTATTTAAANCTA-TT-AATAAT-ATAGCACCACCC-TAT--A-TATCAAACCTTTTTG-ACATTT-TCA----AANNAATACATCATATAACTTACGATCTA---TTGATAGAAAAGA-TCTCGTTNCT--CAAAAGGCTTGCACCAATTATTT--A-AA-------A-A--TAGCTTTAGTTATAC---ACAGTACAC-TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATGTC--A------ATATAGAAATTACCTTCTCCAAT---CACCTAATAAATGATNTTT----GTTATTGTTTGAATAAAATAGTATAAATGTACA-----A------ATATAT-AAAGGCTAA-TATTTGCATGCNTTGCTAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATA---CATT---NTA-ATTTGT-A-ATATTATATTG-TAATGTTTTAAATGT---TGTTGCAGAAGGCCATATTGAAAATAT-----GATGTGT---ACCTTGAN-TTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAA--AGAT-ATTATTAT
Reference ( gi|3 ) : ACGAAATACAAGTT----AAGAAATAAAAATGAACTCAATTTATTCA-TTAACAATGTGTT--TGTAGAAAATGTTACCACTGAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACTAAA-ATATGTGCCAAATTAAACTTAAAA-ATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAACA--TATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGTCAACATTTGATTATTGTTGTATTATTT--TG-GAAAATGGTAAACATATACAAAATATAATATATATATATCTCAGAAAAGAGTAGCGAGAATA-ATACTA---AAT-AAGCCATTGAA-AACAAATTCT--CAAGAAATGTTCAATAAATTG-AA--ATGGCTTCCATTTCCCAAAA-GATGTTTTTTTTATCACACTGCTGTTTTAGTATTTAAAGCTA-TT-AA-AAT-ATAGCACCACCC-TAT--A-TATCAAACCTTTTTA-ATATTT-TCA----AAAAAATCCATCATATTACTTACGATCTA---TTGATAGAAAA-A-TCTCGTTACG--CAAAAGGCTTGCACCGGTTATTT--A-AA-------A-A--TAGCTTTAGTTATACTATATAGTACAC-TAATATGAGATGCAATACCAGTATCTATAAGGCATCTTTCAAATATTCACTCATTTAAATGTC--A------GTATAGAAATTACCTTCTCCAAT---CACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTTCA-----A------ATTTAT-TAAGGCTAA-TATTTACATGCTTTGCTAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATA---TATT---GTA-ATTTGT-A-ATATTGTAGTG-TAATGTTGTAAATGT---TGTTGCAGAAGGCCATATTGAAAATAT-----GATGTGT---ACCTTGAA-TTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAA--AAAT-ATTATTAT
gi|5 : ACGAAATACAAGTT----AAGAAATAAAACGGAACTAAATTTAATCA-TTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTGTCATGGAAAA---A---TACTAAA-ATATGTGCCAAATTAAACTAAAAA-ATAGCAATTCTTAAAAGAATATCATATTA------------TTTAACA--TATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGCCAACATTTGCTTATTGTTGTATTGTTTGGGG-GAAAA-GGTAAACATATACAAAATACAATATATA-A-ATCTCA-ATTGGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTG-CA--ATGGGTTCCATTTCCCAAAA-GATG----TTTTATCACACTCCTGTTTTAGTATTTAAAGCTATTT-AA-AAT-AAAGCACCACCG-TAC--A-TATAAAACCTTTTGACATA----ACC----AAGTAATACATCATATAACTTACGATCTA---TTGATAGAAAAGA-TCTCGTTACT--CAAAAGGCTTGCACCAATTATTTAAA-AA-------A-A--TAGCTTTAGTTATAC----TAGTACAC-TAATATGAAATGCTATACCAGTATATATAAGACATCTTTCAAATATTCAGTCATTTAAATGTC--A------ACATAGAAATTACCTTCTCTAAT---CACCTAATAAATGCTTTTTGCCCGTTATTGTTTGTAT-AAATAGTATAAATGTACA-----A------ATATAT-AAAGGCTA---ATTTGCATGCTTTGTTAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATA---CATT---GTA-ATT
gi|2 : gataattgcgACGAAACACAAATA----AAGAAGTAAAAAGGAACTTAATTT-TACAGTTATCAAAGTGTC--AATAGAAATTGTTACCATTCAGAAATTGTAAGGTGTTTATA---A-AATATCTTTACATGGGAAACCCAGCTTATCAAA-ATATGTTTCAAATTAAACTTAAAA-ATAGCTCCTCTTAAAAGAATACTATATCACCATTTTTTAAGTTTAATAGATATGATATGATATTATTGTTTTACAATGCCAGTATAA------TGTCTACCTTTA--TATTG--G-----------G-GAAAACG-CAAACCTATACAAAATATAATGTATACA-AT-TCAGAAAAGTACAGCGT---TA-ATACTACATAGT-AAACCGTTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTA-TA--ATGGC-TCCATTTTCGAGAA-GATG------TGATCACACTACTGTATTAGTATTTAAAGCTA-TT-AATAAT-ATA-C----CCC-TAT--A-TATCAAACATTTTT--ACATTT-TC-----AAATAATACGTCATATTAC--AC--TTTA---TTGGTAGAAAATA-CGTCGTTTCA--CAAAAGGCTTGCACCAAATATTT--A-AAACAGAAGA-A--TAACTCTAA-TA-ACGGTACACTGCATGTAATATGGACTGTTATACCGGTATATGTAAGACATATTTCAAGTATTCACTCATTTAAATGTC--AATACACGTATAGAAATCCCCTTC-ACATT---CACCTAATAAATGATATCT----G---TTGTTTAAATAAAATAGCATAAATGCACA---------------TATGTAAGAC---------GCATGTATTACTAAACTGGGTGT-----TTGTCATAAGTATAGTTGTACGTA---T-----------T-----T-ATA---CATT---TTA-CTTTGTCG-ATATTATA-TGATAATGTTGTAAATGT---TGATAAAGAAGGCCAAAATGAgg
gi|6 : ttttatttctgaaactagaagtagtgttcactatgctgatgataccacaatatgtgaaacatcgagtgatttattaaatataccaattgaactctagccaatacttaattgtagaagtagataatgtacaaatactaacataccattacaccctacaataaaacaatggtaattgctACGAAATATAATTA----AAGAATTAAAAAGGAGCTTAATTTA--------ACAATGTGTT--TGTAGCAAATGTTACAATTCAGAAAGTATTAGGTGTTTATAGAGACAAAACCCTATCATGGAAAACTCAGATTACTAAA-ATACGTTTCAAATTAAAC-------A-AGCTCT---------GATATCATATTA------------TTTAATA--TAAGA----AAAATATTGTTTTCCAATGCCTATATAAAATAAATGTCTACATTTGGTTATTGTTGTATTATCT--GA-GAAAA-AGAAAAAACATA-AAATTACAATATAT-TA-AACTTAAAAATAA--AACGAAAA-A-AAA--A---GATCAAA--ATTGAA-AACAA
gi|9 : gaatgaactgttcacttgtttaaatcatatctctcgaatagaaaacatctaaaagcagacatgctttcagtaaaatcgggcgtaccgcaggggtctattttagaaccactacttttgcatttatatatgaatgacgtcgcttttatttctgaaactggaagtactgatctctgtgctaatgataccattacatgtgaaatatcaagtgatttattaaatatacacattcaactacaggacagattaaattcaataggcagatagtgtatacataataacatttcctcctaaaagtaattatggctACGAAATACAAATT----GAGAAATAAAAAGGAACTTAATTTAACAA-TTAACAATGTGTTTATATAGAAAATGTTACCtc
gi|11 : tctaaaatcagacatgctttctataaatcgggcgtaccacaagggtctacatgtaattagtaacactactttttcgtttatgtatgaacgacatcgcttttatttctggaacttgaagtactgatctctatgataccataatagatgtatatgaagcataaaataattgattagaaatacaaattcaactccagaacagattaaagtcaataagtagatggtgtataaataataacatgtcattacatcctgaaaaatgacaaatgtgtggttattgctAATACAAGTTCTGTAAGCAATACAAAGGAACATAA-------A-TTAACAATATGTT--AATAGAAAATGTTACCATTCAGAAATTATTACATGTTTATATAAACAATAGGCTAACACGAAAAAC-------ACCAAAGATAAATATCATATTAG--TTAA-------------------------CATATGA------------T---------ATGAAAT--AATTGTT---TCATAATGCCTA-----------------CATTTGAGTATTGTTG---------------------TAAACATATACAAAATACAATAT-TTTA-AACTAAGAAAAGAGCAGCAAGAATA-TTACCA---AAT-AAACCATTGAA-AACAAATTAT--CAAGAAATGTTC
gi|1 : aattgctatacGCT----ACGAAATAAAAATGAAGTAAATTAAATCA-TTAACAATGTGTT--TGTAGAAAATGTTACAATTCAGAAATTATTAGGTGTTT---TAGACAAAACCCTATCATGGAAAACTCAGCTTACTGAA-ATATGTGCCAAATTAAACTAAAAAAATAGCCCTTCTTAAAAGAATTTCATATTA------------TTAAACA--TATGATATGAAAGTATTGTTCTACAATGCCTACATAA------TGTCAACATTTGCTTATTGTTGTTTTGTTT--GGAGAAAAC-GTAAACATATACAAAAT
gi|4 : gaattagctgttctactgtttaaatcatatctctcgaacagaaacaattaattagagtgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgatttattagaactacaaatctaactccaggacagattaaattcaataagcagatggtacacatctaataccatgtcattacatcctgaaaaaaaaatgcatggtaattTAGAAAATGTTACCACCCAGAAATTATTAAGTGTTTATATAGACAATACCCTATCATGAACAA-TCAGCTTATCAAA-ATATGCGCCAAATT--ACTCAAAA-ATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAACA--TATGATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccctatatatcaaaccttttgacttttcaaataatacatcatataactttcgataaattgatagaaaagatctcgttactcaaaaggcttgcaccaattatttaaaaaaatagctttagttatactagtacactaatatagaatgctataccagaatctataagacatatttcaaatattcactcatttaaatgtcaatacaaaaaataccttctccaatcacctatgatttgtgttattgtttgaataaatagtataaatattcaaatatataagggctaatatttgcatgctttgataaatcgagtgtttgtcacaagtagttatacattttaatttgtaatattatattgtaatgttttaaatgctgttgcagaaggccatattaaaaatatgatgtgaaccttgaattcaattgtattatgtcaatatgtgttaccttctataaataaagatattatt
gi|8 : TATATGCATTTCA---AAGAGC--TGGGGACA-TTATTC---ACT-A--CCAATGAA-------TTCT--CAAGAAATGTTTAAAGACTTA-CA--ATGGCTTCCATTTTCCAAAA-TATGTTATT---GTCACACTGATGTATTAGTATATAAACATA-TT-AATAAT-ATAGCACT-----TATTAA-TAGCA--CCGTTTTA--CACTT-TCA----AATA--TACATCATTTTACTAACTATCTA---TTGATCGAAAA-AATCTTGATTCT--CAAAATATTTTCCCTCACAATCT--A-AA-------A-A--AAGCTTTAGTTATA----AAAGTACAC-TAACATGGAATGCTATACCAGTATTTATAAGATAGCTTTGAAATATTCACT-ATTTAAATGTG--A------AAGTAAAAATTACCTTCTCCAAT---CACCTTATAGATGTTATTT----GTTGTTGTTGG---ACAGTAGTATGAATGTACA-----T------ATGTAT-CAATGCTA---AGTTGCATGCATTACTTAATTAAGTGTAAGAATTGTT----------------GTA---T-----------T-----T-ATACATTATT---GTA-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataagccattgaaaacaaactctcaagaaatgttcaataaattgcaatggcttccatttcccaaaatatgtttttatcacactattgttttagtatttaaagctattgaaaatatagcacttacctataatatcaaaccttttgacattttcatataacttacgatctattgatagaaaagatctcgttattcaaaaggcttgcaccaattatttaaaaaataaatttagttatactagtacactaatatggaatgctataccagtatctataagacatctttcaaatattcactcatttaaatattaatatagaaattaccttctctaattacctaataactgatttttgttattttttgaataaaatactataaatgtacaaatatataaaggctaatttgcatgctttgctaaattgagtgtttgtcacaagtacttaaacattgtaatttgtaatattatattgtaatgtttaaaattttgttgcagaaggccatattgaaaatatgatgtgtaccttgaattcaattgtattatgtcataatgtgttaccttctataaataaaaatattattattattta
gi|12 : tATATATACAA---TAT-AAACCACTGAA-AACAAATTTT--CAAAAAATGTTCAATGAAATGCAATCATGGCTTCCATTTTCCAAAACGATG---CTATTATCACTCTGTTGTTTTAGTATTTAGATCAG-TT-AATTAT-ATAGCACTCCCCGTAT--C-TATGACACC-TTTTG-ATATTT-GCACTTTGAATAATACATCATACAATTTATTATCTATTTTTTTTAAAAAT-A-TCTCGTTTTT--CATAAGGATTTCACCCATTATTT--GTAA-------A-A--TAGGTATAATTATA----ATAGAACAttg
gi|4 : A---AAT-AAGCCATTGAA-AACAAACTCT--CAAGAAATGTTCAATAAATTG-CA--ATGGCTTCCATTTCCCAAAA-TATGTTTTT---ATCACACTATTGTTTTAGTATTTAAAGCTA-TTGAA-AAT-ATAGCACTTACC-TAT--AATATCAAACCTTTT-G-ACATTT-TCA-----------------TATAACTTACGATCTA---TTGATAGAAAAGA-TCTCGTTATT--CAAAAGGCTTGCACCAATTATTT--A-AA-------A-AA-TAAATTTAGTTATACTA----GTACAC-TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATATT--A------ATATAGAAATTACCTTCTCTAAT---TACCTAATAACTGATTTTT----GTTATTTTTTGAATAAAATACTATAAATGTACA-----A------ATATAT-AAAGGCTAA-T--TTGCATGCTTTGCTAAATTGAGTGT-----TTGTCACAA------------GTA---C-----------T-----T-AAA---CATT---GTA-ATTTGT-A-ATATTATATTG-TAATGTTTAAAATTT---TGTTGCAGAAGGCCATATTGAAAATAT-----GATGTGT---ACCTTGAA-TTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAA--AAAT-ATTATTAT
gi|23 : tagaaaatgttaccacccagaaattattaagtgtttatatagacaataccctatcatgaacaatcagcttatcaaaatatgcgccaaattactcaaaaatagcccttcttaaaagaatatcatattatttaacatatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCATTTAATAATAAAGTATAACAAGAAATGTTTAATGAATTG-CA--ATTGCTTCCATTTTCGAAAA-TATG---TTATTATCACACTGCTGTTTTAtattta
gi|7 : TTCCAT--ACCAAAA-GATGTTATT---ATGACACTGCTGTATTAGTATTTGAATCTA-GT-AA-TGTTACAGCACCACCC-TAT--G-TATCAAAACATCCTA-----TT-T----------AAT---TAATA------ATGA---A---TTGATAGAAGA---TATTGTTTCT--CAAAAGGCTTGCACCAATTATTT--A-TAT------A-A--AAGCTTTAGTTATA----ACAGTGCAC-TAATCTGGAATGCTGCACCAGTATCTACAAGACATCTTTCAA-------CTCATTTA--TGTCTGA------AAATAAAAATTACCTTCTCCAATGTTTACCTAACAAATGATATTT----GTTGTTGTTTGTATAAAACAGTATAAATGTACATGT--AACATGTATGTAT-AAATGATAA-GA--TGCATGTATTACTGAACTGAGTCT-----TTGTCACAA------------GTAAAGT-----------TGGACAC-ATA---CATT---TTT-ATTTGT---------TGGTT-TCATATT-CACATGTTAATATTGTAGAAGGCCACACTGAAAAT--------GTGTAT---A-ATTG-A-TTC--AGTTAGTTGATAATTTCACAGT
gi|15 : caggAAACTA-TT-AATAAT-AAAGCACCA----------------AACCTTTT-G-ACATTTGTTA----ATAA--TACATCAT---------------------ATAAA------------TACGATCAAAAGGCTTGCACCAATCATTTT-A-AA-------A-A--TAGCTTTAGTTATG----ATAGTACAC-TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTTATATTAATGTC--A------ATATAGAAATttag
gi|1 : gCCC-TAT--A-TATCAAACCTTTTGA-CT--TT-TCA----AATAA-TACATCATATAACTTTCGATAAA---TTGATAGAAAAGA-TCTCGTTACT--CAAAAGGCTTGCACCAATTATTT--A-AA-------A-AAATAGCTTTAGTTATACTA----GTACAC-TAATATAGAATGCTATACCAGAATCTATAAGACATATTTCAAATATTCACTCATTTAAATGTC--A------ATACAAAAAATACCTTCTCCAAT---CACCTA-----TGATTTGT----GTTATTGTTTGAATAAA-TAGTATAAATATTCA-----A------ATATAT-AAGGGCTAA-TATTTGCATGCTTTGATAAATCGAGTGT-----TTGTCACAA------------GTA---G-----------T-----T-ATA---CATT---TTA-ATTTGT-A-ATATTATATTG-TAATGTTTTAAATGC---TGTTGCAGAAGGCCATATTAAAAATAT-----GATGTGA---ACCTTGAA-TTC--AATT-GT--ATTATGTCAATATGTGTTACC----TTCTATAAATAA--AGAT-ATTATT
gi|22 : gaattagctgttctactgtttaaatcatatctctcgaacagaaacaattaattagagtgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgatttattagaactacaaatctaactccaggacagattaaattcaataagcagatggtacacatctaataccatgtcattacatcctgaaaaaaaaatgcatggtaattgctacgaaataaaaatgaagtaaattaaatcattaacaatgtgtttgtagaaaatgttacaattcagaaattattaggtgttttagacaaaaccctatcatggaaaactcagcttactgaaatatgtgccaaattaaactaaaaaaatagcccttcttaaaagaatttcatattattaaacatatgatatgaaagtattgttctacaatgcctacataatgtcaacatttgcttattgttgttttgtttggagaaaacgtaaacatatacaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAGTATTGCACAAATTATTT--A-AA-------ATA--TAGCTGTAGTTAT----TACAATGCAG-TAATAT-AG----AATACTA-TATC-ATA--GC--CTTGCAAATACTC
gi|26 : atcTATCGGTATCTATGGGTCACCTTTCAAGTAGCCACTCATTTAAAT
gi|10 : agtacTATAAGACATCTTTCAAAT--TCACTCATTTAAATGTC--A------ATATAGAAATTACCTTCTCCAAT---CACCTAATAAATGATTTTT----TTTATTGTTTTATTAAAATAGTATAAATGTTAA-----A------ATATAT-AATAGCTAATTTTTTGCATGCTTT-TTAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATA---CATT---GTA-GTTTGT-A-ATATTATATTG-TAATGTTTTAAATGT---TGTTGCACAAGGCCATATTAAAAATAT-----GATGTGT---ACCTTGAA-TTC--AATT-GT--ATTATGTCATAATGTGTAACC----TTCTATCAATAA--AGAT-ATc
gi|13 : TTGTTT---TAAATTC-TATAAATGTACATGTGTAC-----ATGTAT-AAATGCTAA-GAT--ACATGTATTATTAAACTGAGTGT-----TTGTCACAA------------GTA---TAGTTGTATTTGT-----TGATA---CATT---TTA-ATTTGT-TTATATTGTATTG-CATTGTTTTAAATAT---TGCTGCAGAAGGCCATATTGAAAATATTACAAAATGTATGTTACCTTGAT-TTT--AATA-GT--ATTATATCATAATGTGTTACC----TTCTATAAATAG--A
gi|14 : ttA-----A------ATATAT-AAAGGCTAA-T--TTGCATGCTTTGCTAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATA---CATT---GTA-ATTTGT-A-ATATTATATTG-TAATGTTTTAAACGT---TGTTGCAGAAGGCCATATTGAAAATAT-----GATGTGT---ACCTTGAATTTC--AAAT-GT--ATTATGTCATAATGTGTTACC----TTCTTTAAATAA--AGAT-ATTATT
gi|16 : GGGTAT-----TTGTCATAAATATAATT----GTA---C-----------C-----T-ATA---CATT---CTA-ATTTGTTA-ATATGATATTG-CATTGTTGCTAATAT---TGTTAATGAAGACCACATTGGCAATAT-----GATGTGT---ACCTTGAT-TTCAAAATT-AT--ATTATATCATAATGTGTTACC----TTCTATCAGTAA--
gi|17 : ------------GTA---C-----------T-----T-ATG---TATTTAGATAGATGTGTTA-ATACTAGATTG-CAATGTTTTTAATGT---TGT---AGAAGGCCATATGGAAAATAT-----CATATGT---AGCTTGAT-TTCAAAATT-GT--ATTATGTCATAATGTGTCACCCACTTTATATAAATAAATAAAT-
gi|24 : ttATTGTAATTAC-----AAT-TAT---AA-TTGAT-TTC--AATA-GT--ATTTTGTCATAATGTGTTACC----TTCTGTAAATAA--AGATAATTATT
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): ATCATCCATTCCAGTTTTATGTTTAAATCGTTTGCAATAAAGCTGTAACAATAGCAAGCTTTTTAAACTAAGTTTGTCATTCCTTATACACAGGCTACATTGACATCTCGTCTCTCAAAAAGCTTGCACCAATTATCTAAAAAA
Unaligned ( gi|19 ): AAATATAAAACAATTATTTATGTCTAAAATAGGACATGCTGATAATATGATTGGGTGTTCCAAAGAGGATTATATAACAATTAGGGCCACTACTTTTTATTTTATGTTTTGTTTCTAAAACTAGAAGTACTGA
Unaligned ( gi|20 ): CACAAGGGTTTATATTAGGACCACTACATTTTCACTTACATATGAATGACATCGCCTTAATTTAATTCTGAAACTTGAAGTATTGATCTCCATTCTGATGGTATCACACTACGTGAAACATCAAG
Unaligned ( gi|21 ): CATACATGCTAAGATGCTTGAATAATAATTAAGTGTTTATCATAAGAATAGTTGTATTTATACATTTTGTTTTGTCGATATTATACAATGTCATAATGTAATAAATAAAGAACGAAAT
Unaligned ( gi|25 ): TACCTTATATCCTTATATTTTATAATATATATAGTATTATAGAATAGAAACTATTTTCTTGTTAAAAGGGAAACACTACAA
Unaligned ( gi|27 ): TTGCTGCAGTTTACATGTATAGTCATACATGCTCAACCCAACCTAG
Unaligned ( gi|28 ): TAATATACATGTGTATTATAAAGGAGCACAAAGAAACAC
Alignments
lowQualScore : 1111 1 222222222222 111111 11111 11 1 111 22222222 11 1 11 333333333333 1111111 333333 111111 111111 1111 222222222222 222222 222222222222 111111111111111111111 111 11111 11
lowQualScore : 2222 0 7 5 5 77 1 77 11 5 66 5 1 1 1 1 999999999999 77 1 3 3 1 666666 3 99 2 00000 44 1 44 1 1 8 1 1 0 5 2 888 2 5 4 66 000 5 55555555 1 1 3 77 4 00 2 00 333333333333 22 0 2 2 777 5 2 3 88 7 1111111 3 55 111111 222222 66 222222 888 1 0000 55 1 888888888888 0 222222 1 1 99999 999999999999 999999999999999999999 3 6666 3 4 222 3 0 00000 777 4 4 11 4 55 9999 6
lowQualScore : .... . . . . .. . .. .. . .. . . . . . ............ .. . . . . ...... . .. . ..... .. . .. . . . . . . . . ... . . . .. ... . ........ . . . .. . .. . .. ............ .. . . . ... . . . .. . ....... . .. ...... ...... .. ...... ... . .... .. . ............ . ...... . . ..... ............ ..................... . .... . . ... . . ..... ... . . .. . .. .... .
lowQualScore : 1111 6 1 7 7 99 4 99 44 7 44 7 4 7 4 4 333333333333 99 7 1 0 6 444444 0 44 9 44444 00 6 77 4 0 1 0 6 2 0 4 888 0 0 4 99 000 0 66666666 0 0 6 55 4 66 9 33 333333333333 99 1 0 0 888 7 4 6 66 3 8888888 6 00 444444 888888 11 888888 888 0 6666 00 0 555555555555 9 222222 0 4 11111 222222222222 000000000000000000000 3 8888 6 0 666 1 8 00000 000 0 9 00 0 55 4444 7
consensus : ACGAAATACAAGTT----AAGAAATAAAAAGGAACTTAATTTAATC-A-TTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACCAAA-ATATGTGCCAAATTAAACTNAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGTCAACATTTGNTTATTGTTGTATTGTTT-GG-GAAAACGGTAAACATATACAAAATACAATATATATA-ATCTCAGAAAAGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCA---ATGGCTTCCATTTCCCAAAA-GATGTTTTTT--ATCACACTGCTGTTTTAGTATTTAAAGCTATTAATAATATAGCACCACCC-TAT--ATATCAAACCTTTTTGACATTT-TCA----AA-TAATACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTNCTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-A--TAGCTTTAGTTATAC---ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTACA-----A------ATATATAAAGGCTAA-TATTTGCATGCTTTGCTAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTN---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-ANTTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAGAT-ATTATTAT
Reference ( family-869 ) : ACGAAATACAAGTT----AAGAAATAAAAAGGAACTTAATTTAA-C-A-TTAACAATGTGTT--TGTAGAAAATGTTACCATTCAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACCAAA-ATATGTGCCAAATTAAACTNAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAANTATTGTTTTACAATGCCTACATAA------TGTCNACATTTGNTTATTGTTGTATTGTTT-GG-GAAAACGGTAAACATATACAAAATACAATATATATA-ATCTCAGAAAAGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCA---ATGGCTTCCATTTTCCAAAA-GATGTTTTTT--ATCACACTGCTGTNTTAGTATTTAAANCTATTAATAATATAGCACCACCC-TAT--ATATCAAACCTTTTTGACATTT-TCA----AANNAATACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTNCTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-A--TAGCTTTAGTTATAC---ACAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATNTTT----GTTATTGTTTGAATAAAATAGTATAAATGTACA-----A------ATATATAAAGGCTAA-TATTTGCATGCNTTGCTAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTN---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-ANTTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAGAT-ATTATTAT
gi|1 : GCT----ACGAAATAAAAATGAAGTAAATTAAATC-A-TTAACAATGTGTT--TGTAGAAAATGTTACAATTCAGAAATTATTAGGTGTTT---TAGACAAAACCCTATCATGGAAAACTCAGCTTACTGAA-ATATGTGCCAAATTAAACTAAAAAAATAGCCCTTCTTAAAAGAATTTCATATTA------------TTAAAC--ATATGATATGAAAGTATTGTTCTACAATGCCTACATAA------TGTCAACATTTGCTTATTGTTGTTTTGTTT-GGAGAAAAC-GTAAACATATACAAAAT
gi|1 : gaattagctgttctactgtttaaatcatatctctcgaacagaaacaattaattagagtgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgatttattagaactacaaatctaactccaggacagattaaattcaataagcagatggtacacatctaataccatgtcattacatcctgaaaaaaaaatgcatggtaattCCC-TAT--ATATCAAACCTTTT-GAC-TTT-TCA----AAT-AATACATCATATAACTTTCGATAAA---TTGATAGAAAAGATCTCGTTACTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-AAATAGCTTTAGTTATAC----TAGTACAC------TAATATAGAATGCTATACCAGAATCTATAAGACATATTTCAAATATTCACTCATTTAAATGTC--AA------TACAAAAAATACCTTCTCCAA---TCACCTA-----TGATTTGT----GTTATTGTTTGAATAAA-TAGTATAAATATTCA-----A------ATATATAAGGGCTAA-TATTTGCATGCTTTGATAAATCGAGTGT-----TTGTCACAA------------GTA---G-----------T-----T-ATACATTT---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAATGCTGTTGCAGAAGGCCATATTAAAAATAT-----GATGTG---AACCTTG-AATTC--AATT-GT--ATTATGTCAATATGTGTTACC----TTCTATAAATAAAGAT-ATTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccctatatatcaaaccttttgacttttcaaataatacatcatataactttcgataaattgatagaaaagatctcgttactcaaaaggcttgcaccaattatttaaaaaaatagctttagttatactagtacactaatatagaatgctataccagaatctataagacatatttcaaatattcactcatttaaatgtcaatacaaaaaataccttctccaatcacctatgatttgtgttattgtttgaataaatagtataaatattcaaatatataagggctaatatttgcatgctttgataaatcgagtgtttgtcacaagtagttatacattttaatttgtaatattatattgtaatgttttaaatgctgttgcagaaggccatattaaaaatatgatgtgaaccttgaattcaattgtattatgtcaatatgtgttaccttctataaataaagatattatt
gi|10 : gaattagctgttctactgtttaaatcatatctctcgaacagaaacaattaattagagtgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgatttattagaactacaaatctaactccaggacagattaaattcaataagcagatggtacacatctaataccatgtcattacatcctgaaaaaaaaatgcatggtaattgctacgaaataaaaatgaagtaaattaaatcattaacaatgtgtttgtagaaaatgttacaattcagaaattattaggtgttttagacaaaaccctatcatggaaaactcagcttactgaaatatgtgccaaattaaactaaaaaaatagcccttcttaaaagaatttcatattattaaacatatgatatgaaagtattgttctacaatgcctacataatgtcaacatttgcttattgttgttttgtttggagaaaacgtaaacatatacaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATAAGACATCTTTCAAAT--TCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----TTTATTGTTTTATTAAAATAGTATAAATGTTAA-----A------ATATATAATAGCTAATTTTTTGCATGCTTT-TTAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTG---TA-GTTTG-T-A-ATATTATATTGTAATGTTTTAAATGTTGTTGCACAAGGCCATATTAAAAATAT-----GATGTG---TACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTAACC----TTCTATCAATAAAGAT-AT
gi|11 : AATACAAGTTCTGTAAGCAATACAAAGGAACATAA--------A-TTAACAATATGTT--AATAGAAAATGTTACCATTCAGAAATTATTACATGTTTATATAAACAATAGGCTAACACGAAAAAC-------ACCAAAGATAAATATCATATTAG-------------------TTAA--------CATATGA------------T---------ATGAAATAA-----TTGTTTCATAATGCCT-----------------ACATTTGA--------GTATTGTT------------GTAAACATATACAAAATACAATAT-TTTA-AACTAAGAAAAGAGCAGCAAGAATA-TTACCA---AAT-AAACCATTGAA-AACAAATTAT--CAAGAAATGTTC
gi|12 : aattgctatacATATATACAA---TAT-AAACCACTGAA-AACAAATTTT--CAAAAAATGTTCAATGAAATGCAATCATGGCTTCCATTTTCCAAAACGATG-CTATT--ATCACTCTGTTGTTTTAGTATTTAGATCAGTTAATTATATAGCACTCCCCGTAT--CTATGACACC-TTTTGATATTT-GCACTTTGAATAATACATCATACAATTTATTATCTATTTTTTTTA-AAAATATCTCGTTTTTCATAAGGATTTCACCCATTA-TTT--GTAA-------A-A--TAGGTATAATTATA----ATAGAACA
gi|13 : TTGTTT---TAAATTC-TATAAATGTACATGTGTAC-----ATGTATAAATGCTAA-GAT--ACATGTATTATTAAACTGAGTGT-----TTGTCACAA------------GTA---TAGTTGTATTTGT-----TGATACATTT---TA-ATTTG-T-TTATATTGTATTGCATTGTTTTAAATATTGCTGCAGAAGGCCATATTGAAAATATTACAAAATGTATGTTACCTTG-ATTTT--AATA-GT--ATTATATCATAATGTGTTACC----TTCTATAAATAGA
gi|14 : ttA-----A------ATATATAAAGGCTAA-T--TTGCATGCTTTGCTAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTG---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAACGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTGAATTTC--AAAT-GT--ATTATGTCATAATGTGTTACC----TTCTTTAAATAAAGAT-ATTATT
gi|15 : AAACTATTAATAATAAAGCACCA---------------AACCTTTT-GACATTTGTTA----A--TAATACATCATATAAAT-ACGATC-----------------------------AAAAGGCTTGCACCAATCATTTT--A-AA-------A-A--TAGCTTTAGTTATG----ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTTATATTAATGTC--AA------TATAGAAAT
gi|16 : gGGGTAT-----TTGTCATAAATATAATT----GTA---C-----------C-----T-ATACATTC---TA-ATTTG-TTA-ATATGATATTGCATTGTTGCTAATATTGTTAATGAAGACCACATTGGCAATAT-----GATGTG---TACCTTG-ATTTCAAAATT-AT--ATTATATCATAATGTGTTACC----TTCTATCAGTAA
gi|17 : ------------GTA---C-----------T-----T-ATGTATTTAGATAGATGTG-TTA-ATACTAGATTGCAATGTTTTTAATGTTGT---AGAAGGCCATATGGAAAATAT-----CATATG---TAGCTTG-ATTTCAAAATT-GT--ATTATGTCATAATGTGTCACCCACTTTATATAAATAAA
gi|18 : ttATCTCGTCTCTCAAAAAGCTTGCACCAATTA-TCT--A-AA-------A-A--taaata
gi|2 : atcatccattccagttttatgtttaaatcgtttgcaataaagctgtaacaatagcaagctttttaaactaagtttgtcattccttatacacaggctacattgacACGAAACACAAATA----AAGAAGTAAAAAGGAACTTAATTTTA-C-AGTTATCAAAGTGTC--AATAGAAATTGTTACCATTCAGAAATTGTAAGGTGTTTATA---A-AATATCTTTACATGGGAAACCCAGCTTATCAAA-ATATGTTTCAAATTAAACTTAAA-AATAGCTCCTCTTAAAAGAATACTATATCACCATTTTTTAAGTTTAATAGATATGATATGATATTATTGTTTTACAATGCCAGTATAA------TGTCTACCTTTA--TATTG------------GG-GAAAAC-GCAAACCTATACAAAATATAATGTATACA-AT-TCAGAAAAGTACAGCG---TTA-ATACTACATAGT-AAACCGTTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTATA---ATGGC-TCCATTTTCGAGAA-GATG----TG--ATCACACTACTGTATTAGTATTTAAAGCTATTAATAATATA-C----CCC-TAT--ATATCAAACATTTTT-ACATTT-TCA----AA-TAATACGTCATA----TTACACTTTA---TTGGTAGAAAATACGTCGTTTCACAAAAGGCTTGCACCAAATA-TTT--A-AAACAGAAGA-A--TAACTCTA---ATA----ACGGTACACTGCATGTAATATGGACTGTTATACCGGTATATGTAAGACATATTTCAAGTATTCACTCATTTAAATGTC--AATACACGTATAGAAATCCCCTTC-ACAT---TCACCTAATAAATGATATCT----G---TTGTTTAAATAAAATAGCATAAATGCAC-------------ATATGT-AAGAC---------GCATGTATTACTAAACTGGGTGT-----TTGTCATAAGTATAGTTGTACGTA---T-----------T-----T-ATACATTT---TA-CTTTG-TCG-ATATTATATGATAATGTTGTAAATGTTGATAAAGAAGGCCAAAATGAa
gi|22 : ttttatttctgaaactagaagtagtgttcactatgctgatgataccacaatatgtgaaacatcgagtgatttattaaatataccaattgaactctagccaatacttaattgtagaagtagataatgtacaaatactaacataccattacaccctacaataaaacaatggtaattgctAAAGTATTGCACAAATTA-TTT--A-AA-------ATA--TAGCTGTAGTTAT-T---ACAATGCAG------TAATATAGAATACTATATCA
gi|23 : atcCATTTAATAATAAAGTATAACAAGAAATGTTTAATGAATTGCA---ATTGCTTCCATTTTCGAAAA-TATG-TTATT--ATCACACTGCTGTTTTAtagccttgcaaatactc
gi|24 : ATTGTAATTAC-----AAT-TA---TAA-TTG-ATTTC--AATA-GT--ATTTTGTCATAATGTGTTACC----TTCTGTAAATAAAGATAATTATT
gi|26 : AGTACTAT--CGGTATCTATGGGTCACCTTTCAAGTAGCCACTCATTTAAATtttttt
gi|3 : ACGAAATACAAGTT----AAGAAATAAAAATGAACTCAATTTATTC-A-TTAACAATGTGTT--TGTAGAAAATGTTACCACTGAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACTAAA-ATATGTGCCAAATTAAACTTAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGTCAACATTTGATTATTGTTGTATTATTT-TG-GAAAATGGTAAACATATACAAAATATAATATATATATATCTCAGAAAAGAGTAGCGAGAATA-ATACTA---AAT-AAGCCATTGAA-AACAAATTCT--CAAGAAATGTTCAATAAATTGAA---ATGGCTTCCATTTCCCAAAA-GATGTTTTTTTTATCACACTGCTGTTTTAGTATTTAAAGCTATTAA-AATATAGCACCACCC-TAT--ATATCAAACCTTTTTAATATTT-TCA----AAAAAATCCATCATATTACTTACGATCTA---TTGATAGAAAA-ATCTCGTTACGCAAAAGGCTTGCACCGGTTA-TTT--A-AA-------A-A--TAGCTTTAGTTATACTATATAGTACAC------TAATATGAGATGCAATACCAGTATCTATAAGGCATCTTTCAAATATTCACTCATTTAAATGTC--AG------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTTCA-----A------ATTTATTAAGGCTAA-TATTTACATGCTTTGCTAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATATATTG---TA-ATTTG-T-A-ATATTGTAGTGTAATGTTGTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAAAT-ATTATTATc
gi|4 : TAGAAAATGTTACCACCCAGAAATTATTAAGTGTTTATATAGACAATACCCTATCATGAACAA-TCAGCTTATCAAA-ATATGCGCCAAATT--ACTCAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNAA---A-T-AAGCCATTGAA-AACAAACTCT--CAAGAAATGTTCAATAAATTGCA---ATGGCTTCCATTTCCCAAAA-TATG-TTTTT--ATCACACTATTGTTTTAGTATTTAAAGCTATTGAAAATATAGCACTTACC-TATA-ATATCAAACC-TTTTGACATTT------------------TCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTATTCAAAAGGCTTGCACCAATTA-TTTA-A-AA-------A-A--TAAATTTAGTTATAC----TAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATATT--AA------TATAGAAATTACCTTCTCTAA---TTACCTAATAACTGATTTTT----GTTATTTTTTGAATAAAATACTATAAATGTACA-----A------ATATATAAAGGCTA---ATTTGCATGCTTTGCTAAATTGAGTGT-----TTGTCACAA------------GTA---C-----------T-----T-AAACATTG---TA-ATTTG-T-A-ATATTATATTGTAATGTTTAAAATTTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAAAT-ATTATTAT
gi|5 : ACGAAATACAAGTT----AAGAAATAAAACGGAACTAAATTTAATC-A-TTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTGTCATGGAAAA---A---TACTAAA-ATATGTGCCAAATTAAACTAAAA-AATAGCAATTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGCCAACATTTGCTTATTGTTGTATTGTTTGGG-GGAAAAGGTAAACATATACAAAATACAATATATA-A-ATCTCA-ATTGGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCA---ATGGGTTCCATTTCCCAAAA-GATG--TTTT--ATCACACTCCTGTTTTAGTATTTAAAGCTATTTAAAATAAAGCACCACCG-TAC--ATATAAAACC-TTTTGACATAA-CC-----AAGTAATACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTACTCAAAAGGCTTGCACCAATTA-TTTAAA-AA-------A-A--TAGCTTTAGTTATAC----TAGTACAC------TAATATGAAATGCTATACCAGTATATATAAGACATCTTTCAAATATTCAGTCATTTAAATGTC--AA------CATAGAAATTACCTTCTCTAA---TCACCTAATAAATGCTTTTTGCCCGTTATTGTTTGTAT-AAATAGTATAAATGTACA-----A------ATATATAAAGGCTA---ATTTGCATGCTTTGTTAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTG---TA-ATTtattta
gi|6 : gataattgcgACGAAATATAATTA----AAGAATTAAAAAGGAGCTTAATTTAA-C-A-------ATGTGTT--TGTAGCAAATGTTACAATTCAGAAAGTATTAGGTGTTTATAGAGACAAAACCCTATCATGGAAAACTCAGATTACTAAA-ATACGTTTCAAATTAAAC-------A-AGCTCT---------GATATCATATTA------------TTTAAT--ATAAGA----AAAATATTGTTTTCCAATGCCTATATAAAATAAATGTCTACATTTGGTTATTGTTGTATTATCT-GA-GAAAAAGA-AAAAACATA-AAATTACAATATAT-TA-AACTTAAAAATAA--AACGAAAA-A-AAA--A---GATCAAA--ATTGAA-AACAAgg
gi|7 : gaatgaactgttcacttgtttaaatcatatctctcgaatagaaaacatctaaaagcagacatgctttcagtaaaatcgggcgtaccgcaggggtctattttagaaccactacttttgcatttatatatgaatgacgtcgcttttatttctgaaactggaagtactgatctctgtgctaatgataccattacatgtgaaatatcaagtgatttattaaatatacacattcaactacaggacagattaaattcaataggcagatagtgtatacataataacatttcctcctaaaagtaattatggctTTCCATA--CCAAAA-GATGTTATT---ATGACACTGCTGTATTAGTATTTGAATCTAGTAATGTTACAGCACCACCC-TAT--GTATCAAAACATCCT---ATTT--------AATTAATA-------------ATGA---A---TTGATAGAA--GATATTGTTTCTCAAAAGGCTTGCACCAATTA-TTT--ATAT-------A-A--AAGCTTTAGTTATA----ACAGTGCAC------TAATCTGGAATGCTGCACCAGTATCTACAAGACATCTTTCA-------ACTCATTT--ATGTCTGAA------AATAAAAATTACCTTCTCCAATGTTTACCTAACAAATGATATTT----GTTGTTGTTTGTATAAAACAGTATAAATGTACATGT--AACATGTATGTATAAATGATAA-GA--TGCATGTATTACTGAACTGAGTCT-----TTGTCACAA------------GTAAAGT-----------TGGACAC-ATACATTT---TT-ATTTGTT-G-GTTTCATATTCACATGTT---AATATTGT---AGAAGGCCACACTGAAAAT--------GTGTA---TA-ATTG-A-TTC--AGTTAGTTGATAATTTCACAGTtc
gi|8 : caggTATATGCATTTCA---AAGAGC--TGGGGACA-TTATTC---ACT-A--CCAATGAA-------TTCT--CAAGAAATGTTTAAAGACTTACA---ATGGCTTCCATTTTCCAAAA-TATGTTATT---GTCACACTGATGTATTAGTATATAAACATATTAATAATATAGCACT-----TATTAATAGCA--CCGTTTT-ACACTT-TCA----AAT--ATACATCATTTTACTAACTATCTA---TTGATCGAAAAAATCTTGATTCTCAAAATATTTTCCCTCACAA-TCT--A-AA-------A-A--AAGCTTTAGTTATAA---A-AGTACAC------TAACATGGAATGCTATACCAGTATTTATAAGATAGCTTTGAAATATTCACT-ATTTAAATGTG--AA------AGTAAAAATTACCTTCTCCAA---TCACCTTATAGATGTTATTT----GTTGTTGTTGG---ACAGTAGTATGAATGTACA-----T------ATGTATCAATGCTA---AGTTGCATGCATTACTTAATTAAGTGTAAGAATTGTT----------------GTA---T-----------T-----T-ATACATTA---Tttag
gi|9 : tACGAAATACAAATT----GAGAAATAAAAAGGAACTTAATTTAA-CAA-TTAACAATGTGTTTATATAGAAAATGTTACCtgtattg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAATATAAAACAATTATTTATGTCTAAAATAGGACATGCTGATAATATGATTGGGTGTTCCAAAGAGGATTATATAACAATTAGGGCCACTACTTTTTATTTTATGTTTTGTTTCTAAAACTAGAAGTACTGA
Unaligned ( gi|20 ): CACAAGGGTTTATATTAGGACCACTACATTTTCACTTACATATGAATGACATCGCCTTAATTTAATTCTGAAACTTGAAGTATTGATCTCCATTCTGATGGTATCACACTACGTGAAACATCAAG
Unaligned ( gi|21 ): CATACATGCTAAGATGCTTGAATAATAATTAAGTGTTTATCATAAGAATAGTTGTATTTATACATTTTGTTTTGTCGATATTATACAATGTCATAATGTAATAAATAAAGAACGAAAT
Unaligned ( gi|25 ): TACCTTATATCCTTATATTTTATAATATATATAGTATTATAGAATAGAAACTATTTTCTTGTTAAAAGGGAAACACTACAA
Unaligned ( gi|27 ): TTGCTGCAGTTTACATGTATAGTCATACATGCTCAACCCAACCTAG
Unaligned ( gi|28 ): TAATATACATGTGTATTATAAAGGAGCACAAAGAAACAC
Alignments
lowQualScore : 1111 11 222222222222 111111 11111 11 1 111 22222222 11 1 11 11111111 1111111 222222 111111 111111 1111 222222222222 222222 222222222222 111111111111111111111 1 11111 11
lowQualScore : 2222 0 00 77 1 77 11 5 66 5 1 1 1 1 999999999999 77 1 3 1 1 666666 3 99 2 00000 44 1 44 1 1 8 1 1 0 5 2 888 2 5 4 66 000 1 5 55555555 0 1 3 77 4 00 2 00 33333333 4 22 0 2 2 777 5 2 3 88 7 1111111 3 55 777777 222222 66 222222 888 0 0000 55 1 888888888888 0 222222 0 6666 88888 666666666666 777777777777777777777 3 6666 3 3 0 3 3 0 00000 777 4 4 11 4 55 9999 6
lowQualScore : .... . .. .. . .. .. . .. . . . . . ............ .. . . . . ...... . .. . ..... .. . .. . . . . . . . . ... . . . .. ... . . ........ . . . .. . .. . .. ........ . .. . . . ... . . . .. . ....... . .. ...... ...... .. ...... ... . .... .. . ............ . ...... . .... ..... ............ ..................... . .... . . . . . . ..... ... . . .. . .. .... .
lowQualScore : 1111 6 00 99 4 99 44 7 44 7 4 7 4 4 333333333333 99 7 1 0 6 444444 3 44 9 44444 00 6 77 4 0 1 0 6 2 0 4 888 0 0 4 99 000 1 0 66666666 8 4 6 55 4 66 9 33 99999999 4 99 1 0 0 888 7 4 6 66 3 8888888 6 00 222222 888888 11 888888 888 8 6666 00 0 555555555555 9 222222 5 5555 33333 999999999999 333333333333333333333 1 4444 3 6 9 6 1 8 00000 000 0 9 00 0 55 4444 7
consensus : ACGAAATACAAGTT----AAGAAATAAAAAGGAACTTAATTTAATCATTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACCAAA-ATATGTGCCAAATTAAACTNAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGTCAACATTTGNTTATTGTTGTATTGTTT-GG-GAAAACGGTAAACATATACAAAATACAATATATATA-ATCTCAGAAAAGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCAAT---GGCTTCCATTTCCCAAAA-GATGTTTTTT--ATCACACTGCTGTTTTAGTATTTAAAGCTATTAATAATATAGCACCACCC-TAT--ATATCAAACCTTTTTGACATTTTCA-----AATAA-TACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTNCTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-A--TAGCTTTAGTTATAC---ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTACA-----A------ATATATAAAGGCTAA-TATTTGCATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTN---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-ANTTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAGAT-ATTATTAT
Reference ( family-869 ) : ACGAAATACAAGTT----AAGAAATAAAAAGGAACTTAATTTAATCATTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACCAAA-ATATGTGCCAAATTAAACTNAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGTCAACATTTGNTTATTGTTGTATTGTTT-GG-GAAAACGGTAAACATATACAAAATACAATATATATA-ATCTCAGAAAAGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCAAT---GGCTTCCATTTCCCAAAA-GATGTTTTTT--ATCACACTGCTGTTTTAGTATTTAAAGCTATTAATAATATAGCACCACCC-TAT--ATATCAAACCTTTTTGACATTTTCA-----AATAA-TACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTNCTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-A--TAGCTTTAGTTATAC---ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTACA-----A------ATATATAAAGGCTAA-TATTTGCATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTN---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-ANTTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAGAT-ATTATTAT
gi|1 : GCT----ACGAAATAAAAATGAAGTAAATTAAATCATTAACAATGTGTT--TGTAGAAAATGTTACAATTCAGAAATTATTAGGTGTTT---TAGACAAAACCCTATCATGGAAAACTCAGCTTACTGAA-ATATGTGCCAAATTAAACTAAAAAAATAGCCCTTCTTAAAAGAATTTCATATTA------------TTAAAC--ATATGATATGAAAGTATTGTTCTACAATGCCTACATAA------TGTCAACATTTGCTTATTGTTGTTTTGTTT-GGAGAAAAC-GTAAACATATACAAAAT
gi|1 : gaattagctgttctactgtttaaatcatatctctcgaacagaaacaattaattagagtgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgatttattagaactacaaatctaactccaggacagattaaattcaataagcagatggtacacatctaataccatgtcattacatcctgaaaaaaaaatgcatggtaattCCC-TAT--ATATCAAACCTTTT-GAC-TTTTCA-----AATAA-TACATCATATAACTTTCGATAAA---TTGATAGAAAAGATCTCGTTACTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-AAATAGCTTTAGTTATAC----TAGTACAC------TAATATAGAATGCTATACCAGAATCTATAAGACATATTTCAAATATTCACTCATTTAAATGTC--AA------TACAAAAAATACCTTCTCCAA---TCACCTA-----TGATTTGT----GTTATTGTTTGAATAAA-TAGTATAAATATTCA-----A------ATATATAAGGGCTAA-TATTTGCATGCTTTGA--TAAATCGAGTGT-----TTGTCACAA------------GTA---G-----------T-----T-ATACATTT---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAATGCTGTTGCAGAAGGCCATATTAAAAATAT-----GATGTG---AACCTTG-AATTC--AATT-GT--ATTATGTCAATATGTGTTACC----TTCTATAAATAAAGAT-ATTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccctatatatcaaaccttttgacttttcaaataatacatcatataactttcgataaattgatagaaaagatctcgttactcaaaaggcttgcaccaattatttaaaaaaatagctttagttatactagtacactaatatagaatgctataccagaatctataagacatatttcaaatattcactcatttaaatgtcaatacaaaaaataccttctccaatcacctatgatttgtgttattgtttgaataaatagtataaatattcaaatatataagggctaatatttgcatgctttgataaatcgagtgtttgtcacaagtagttatacattttaatttgtaatattatattgtaatgttttaaatgctgttgcagaaggccatattaaaaatatgatgtgaaccttgaattcaattgtattatgtcaatatgtgttaccttctataaataaagatattatt
gi|10 : gaattagctgttctactgtttaaatcatatctctcgaacagaaacaattaattagagtgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgatttattagaactacaaatctaactccaggacagattaaattcaataagcagatggtacacatctaataccatgtcattacatcctgaaaaaaaaatgcatggtaattgctacgaaataaaaatgaagtaaattaaatcattaacaatgtgtttgtagaaaatgttacaattcagaaattattaggtgttttagacaaaaccctatcatggaaaactcagcttactgaaatatgtgccaaattaaactaaaaaaatagcccttcttaaaagaatttcatattattaaacatatgatatgaaagtattgttctacaatgcctacataatgtcaacatttgcttattgttgttttgtttggagaaaacgtaaacatatacaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATAAGACATCTTTCAAAT--TCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----TTTATTGTTTTATTAAAATAGTATAAATGTTAA-----A------ATATATAATAGCTAATTTTTTGCATGCTTT-T--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTG---TA-GTTTG-T-A-ATATTATATTGTAATGTTTTAAATGTTGTTGCACAAGGCCATATTAAAAATAT-----GATGTG---TACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTAACC----TTCTATCAATAAAGAT-AT
gi|11 : AATACAAGTTCTGTAAGCAATACAAAGGAACATAA-------ATTAACAATATGTT--AATAGAAAATGTTACCATTCAGAAATTATTACATGTTTATATAAACAATAGGCTAACACGAAAAAC-------ACCAAAGATAAATATCATATTAG-------------------TTAA--------CATATGA------------T---------ATGAAATAA-----TTGTTTCATAATGCCT-----------------ACATTTGA--------GTATTGTT------------GTAAACATATACAAAATACAATAT-TTTA-AACTAAGAAAAGAGCAGCAAGAATA-TTACCA---AAT-AAACCATTGAA-AACAAATTAT--CAAGAAATGTTC
gi|12 : aattgctatacATATATACAA---TAT-AAACCACTGAA-AACAAATTTT--CAAAAAATGTTCAATGAAATGCAATCATGGCTTCCATTTTCCAAAACGATG-CTATT--ATCACTCTGTTGTTTTAGTATTTAGATCAGTTAATTATATAGCACTCCCCGTAT--CTATGACACC-TTTTGATATTTGCACTTTGAATAA-TACATCATACAATTTATTATCTATTTTTTTTA-AAAATATCTCGTTTTTCATAAGGATTTCACCCATTA-TTT--GTAA-------A-A--TAGGTATAATTATA----ATAGAACA
gi|13 : TTGTTT---TAAATTC-TATAAATGTACATGTGTAC-----ATGTATAAATGCTAA-GAT--ACATGTATTAT--TAAACTGAGTGT-----TTGTCACAA------------GTA---TAGTTGTATTTGT-----TGATACATTT---TA-ATTTG-T-TTATATTGTATTGCATTGTTTTAAATATTGCTGCAGAAGGCCATATTGAAAATATTACAAAATGTATGTTACCTTG-ATTTT--AATA-GT--ATTATATCATAATGTGTTACC----TTCTATAAATAGA
gi|14 : ttA-----A------ATATATAAAGGCTAA-T--TTGCATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTG---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAACGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTGAATTTC--AAAT-GT--ATTATGTCATAATGTGTTACC----TTCTTTAAATAAAGAT-ATTATT
gi|15 : AAACTATTAATAATAAAGCACCA---------------AACCTTTT-GACATTTGTT-----AATAA-TACATCATATAAAT-ACGATC-----------------------------AAAAGGCTTGCACCAATCATTTT--A-AA-------A-A--TAGCTTTAGTTATG----ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTTATATTAATGTC--AA------TATAGAAAT
gi|16 : gGGGTAT-----TTGTCATAAATATAATT----GTA---C-----------C-----T-ATACATTC---TA-ATTTG-TTA-ATATGATATTGCATTGTTGCTAATATTGTTAATGAAGACCACATTGGCAATAT-----GATGTG---TACCTTG-ATTTCAAAATT-AT--ATTATATCATAATGTGTTACC----TTCTATCAGTAA
gi|17 : ------------GTA---C-----------T-----T-ATGTATTTAGATAGATGTG-TTA-ATACTAGATTGCAATGTTTTTAATGTTGT---AGAAGGCCATATGGAAAATAT-----CATATG---TAGCTTG-ATTTCAAAATT-GT--ATTATGTCATAATGTGTCACCCACTTTATATAAATAAA
gi|18 : ttATCTCGTCTCTCAAAAAGCTTGCACCAATTA-TCT--A-AA-------A-A--taaata
gi|2 : atcatccattccagttttatgtttaaatcgtttgcaataaagctgtaacaatagcaagctttttaaactaagtttgtcattccttatacacaggctacattgacACGAAACACAAATA----AAGAAGTAAAAAGGAACTTAATTTTACAGTTATCAAAGTGTC--AATAGAAATTGTTACCATTCAGAAATTGTAAGGTGTTTATA-A---AATATCTTTACATGGGAAACCCAGCTTATCAAA-ATATGTTTCAAATTAAACTTAAA-AATAGCTCCTCTTAAAAGAATACTATATCACCATTTTTTAAGTTTAATAGATATGATATGATATTATTGTTTTACAATGCCAGTATAA------TGTCTACCTTTA--TATTG------------GG-GAAAAC-GCAAACCTATACAAAATATAATGTATACA-AT-TCAGAAAAGTACAGCG---TTA-ATACTACATAGT-AAACCGTTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTATAAT---GGC-TCCATTTTCGAGAA-GATG----TG--ATCACACTACTGTATTAGTATTTAAAGCTATTAATAATATA-C----CCC-TAT--ATATCAAACATTTTT-ACATTTTCA-----AATAA-TACGTCATA----TTACACTTTA---TTGGTAGAAAATACGTCGTTTCACAAAAGGCTTGCACCAAATA-TTT--A-AAACAGAAGA-A--TAACTCTA---ATA----ACGGTACACTGCATGTAATATGGACTGTTATACCGGTATATGTAAGACATATTTCAAGTATTCACTCATTTAAATGTC--AATACACGTATAGAAATCCCCTTC-ACAT---TCACCTAATAAATGATATCT----G---TTGTTTAAATAAAATAGCATAAATGCAC-------------ATATGT-AAGAC---------GCATGTATTAC--TAAACTGGGTGT-----TTGTCATAAGTATAGTTGTACGTA---T-----------T-----T-ATACATTT---TA-CTTTG-TCG-ATATTATATGATAATGTTGTAAATGTTGATAAAGAAGGCCAAAATGAa
gi|22 : ttttatttctgaaactagaagtagtgttcactatgctgatgataccacaatatgtgaaacatcgagtgatttattaaatataccaattgaactctagccaatacttaattgtagaagtagataatgtacaaatactaacataccattacaccctacaataaaacaatggtaattgctAAAGTATTGCACAAATTA-TTT--A-AA-------ATA--TAGCTGTAGTTAT-T---ACAATGCAG------TAATATAGAATACTATATCA
gi|23 : atcCATTTAATAATAAAGTATAACAAGAAATGTTTAATGAATTGCAAT---TGCTTCCATTTTCGAAAA-TATG-TTATT--ATCACACTGCTGTTTTAtagccttgcaaatactc
gi|24 : ATTGTAATTAC-----AAT-TA---TAA-TTG-ATTTC--AATA-GT--ATTTTGTCATAATGTGTTACC----TTCTGTAAATAAAGATAATTATT
gi|26 : AGTACTAT--CGGTATCTATGGGTCACCTTTCAAGTAGCCACTCATTTAAATtttttt
gi|3 : ACGAAATACAAGTT----AAGAAATAAAAATGAACTCAATTTATTCATTAACAATGTGTT--TGTAGAAAATGTTACCACTGAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACTAAA-ATATGTGCCAAATTAAACTTAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGTCAACATTTGATTATTGTTGTATTATTT-TG-GAAAATGGTAAACATATACAAAATATAATATATATATATCTCAGAAAAGAGTAGCGAGAATA-ATACTA---AAT-AAGCCATTGAA-AACAAATTCT--CAAGAAATGTTCAATAAATTGAAAT---GGCTTCCATTTCCCAAAA-GATGTTTTTTTTATCACACTGCTGTTTTAGTATTTAAAGCTATTAA-AATATAGCACCACCC-TAT--ATATCAAACCTTTTTAATATTTTCA-----AAAAAATCCATCATATTACTTACGATCTA---TTGATAGAAAA-ATCTCGTTACGCAAAAGGCTTGCACCGGTTA-TTT--A-AA-------A-A--TAGCTTTAGTTATACTATATAGTACAC------TAATATGAGATGCAATACCAGTATCTATAAGGCATCTTTCAAATATTCACTCATTTAAATGTC--AG------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTTCA-----A------ATTTATTAAGGCTAA-TATTTACATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATATATTG---TA-ATTTG-T-A-ATATTGTAGTGTAATGTTGTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAAAT-ATTATTATc
gi|4 : TAGAAAATGTTACCACCCAGAAATTATTAAGTGTTTATATAGACAATACCCTATCATGAACAA-TCAGCTTATCAAA-ATATGCGCCAAATT--ACTCAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNAA---A-T-AAGCCATTGAA-AACAAACTCT--CAAGAAATGTTCAATAAATTGCAAT---GGCTTCCATTTCCCAAAA-TATG-TTTTT--ATCACACTATTGTTTTAGTATTTAAAGCTATTGAAAATATAGCACTTACC-TATA-ATATCAAACC-TTTTGACATTT------------------TCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTATTCAAAAGGCTTGCACCAATTA-TTTA-A-AA-------A-A--TAAATTTAGTTATAC----TAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATATT--AA------TATAGAAATTACCTTCTCTAA---TTACCTAATAACTGATTTTT----GTTATTTTTTGAATAAAATACTATAAATGTACA-----A------ATATATAAAGGCTA---ATTTGCATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---C-----------T-----T-AAACATTG---TA-ATTTG-T-A-ATATTATATTGTAATGTTTAAAATTTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAAAT-ATTATTAT
gi|5 : ACGAAATACAAGTT----AAGAAATAAAACGGAACTAAATTTAATCATTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTGTCATGGAAAA---A---TACTAAA-ATATGTGCCAAATTAAACTAAAA-AATAGCAATTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGCCAACATTTGCTTATTGTTGTATTGTTTGGG-GGAAAAGGTAAACATATACAAAATACAATATATA-A-ATCTCA-ATTGGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCAAT---GGGTTCCATTTCCCAAAA-GATG--TTTT--ATCACACTCCTGTTTTAGTATTTAAAGCTATTTAAAATAAAGCACCACCG-TAC--ATATAAAACC-TTTTGACATAACCA-----AGTAA-TACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTACTCAAAAGGCTTGCACCAATTA-TTTAAA-AA-------A-A--TAGCTTTAGTTATAC----TAGTACAC------TAATATGAAATGCTATACCAGTATATATAAGACATCTTTCAAATATTCAGTCATTTAAATGTC--AA------CATAGAAATTACCTTCTCTAA---TCACCTAATAAATGCTTTTTGCCCGTTATTGTTTGTAT-AAATAGTATAAATGTACA-----A------ATATATAAAGGCTA---ATTTGCATGCTTTGT--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTG---TA-ATTtattta
gi|6 : gataattgcgACGAAATATAATTA----AAGAATTAAAAAGGAGCTTAATTTAA-------CAATGTGTT--TGTAGCAAATGTTACAATTCAGAAAGTATTAGGTGTTTATAGAGACAAAACCCTATCATGGAAAACTCAGATTACTAAA-ATACGTTTCAAATTAAAC-------A-AGCTCT---------GATATCATATTA------------TTTAAT--ATAAGA----AAAATATTGTTTTCCAATGCCTATATAAAATAAATGTCTACATTTGGTTATTGTTGTATTATCT-GA-GAAAAAGA-AAAAACATA-AAATTACAATATAT-TA-AACTTAAAAATAA--AACGAAAA-A-AAA--A---GATCAAA--ATTGAA-AACAAgg
gi|7 : gaatgaactgttcacttgtttaaatcatatctctcgaatagaaaacatctaaaagcagacatgctttcagtaaaatcgggcgtaccgcaggggtctattttagaaccactacttttgcatttatatatgaatgacgtcgcttttatttctgaaactggaagtactgatctctgtgctaatgataccattacatgtgaaatatcaagtgatttattaaatatacacattcaactacaggacagattaaattcaataggcagatagtgtatacataataacatttcctcctaaaagtaattatggctTTCCAT--ACCAAAA-GATGTTATT---ATGACACTGCTGTATTAGTATTTGAATCTAGTAATGTTACAGCACCACCC-TAT--GTATCAAAACATCCT---ATTT--A-----ATTAA-TA-------------ATGA---A---TTGATAGAA--GATATTGTTTCTCAAAAGGCTTGCACCAATTA-TTT--ATAT-------A-A--AAGCTTTAGTTATA----ACAGTGCAC------TAATCTGGAATGCTGCACCAGTATCTACAAGACATCTTTCA-------ACTCATTT--ATGTCTGAA------AATAAAAATTACCTTCTCCAATGTTTACCTAACAAATGATATTT----GTTGTTGTTTGTATAAAACAGTATAAATGTACATGT--AACATGTATGTATAAATGATAA-GA--TGCATGTATTAC--TGAACTGAGTCT-----TTGTCACAA------------GTAAAGT-----------TGGACAC-ATACATTT---TT-ATTTGTT-G-GTTTCATATTCACATGTT---AATATTGT---AGAAGGCCACACTGAAAAT--------GTGTA---TA-ATTG-A-TTC--AGTTAGTTGATAATTTCACAGTtc
gi|8 : caggTATATGCATTTCA---AAGAGC--TGGGGACA-TTATTC---ACT-A--CCAATGAA-------TTCT--CAAGAAATGTTTAAAGACTTACAAT---GGCTTCCATTTTCCAAAA-TATGTTATT---GTCACACTGATGTATTAGTATATAAACATATTAATAATATAGCACT-----TATTAATAGCA--CCGTTTT-ACACTTTCA-----AATA--TACATCATTTTACTAACTATCTA---TTGATCGAAAAAATCTTGATTCTCAAAATATTTTCCCTCACAA-TCT--A-AA-------A-A--AAGCTTTAGTTATAA---A-AGTACAC------TAACATGGAATGCTATACCAGTATTTATAAGATAGCTTTGAAATATTCACT-ATTTAAATGTG--AA------AGTAAAAATTACCTTCTCCAA---TCACCTTATAGATGTTATTT----GTTGTTGTTGG---ACAGTAGTATGAATGTACA-----T------ATGTATCAATGCTA---AGTTGCATGCATTAC--TTAATTAAGTGTAAGAATTGTT----------------GTA---T-----------T-----T-ATACATTA---Tttag
gi|9 : tCATGCTTT-CTATAAATCGGGCG-------TACCACAA------------GGG---T-----------C-----T-ACA---TG---TA-ATTAG-T-A-ACACTAtgtattg
gi|9 : tctaaaatcagaACGAAATACAAATT----GAGAAATAAAAAGGAACTTAATTTAACAATTAACAATGTGTTTATATAGAAAATGTTACCctttttcgtttatgtatgaacgacatcgcttttatttctggaacttgaagtactgatctctatgataccataatagatgtatatgaagcataaaataattgattagaaatacaaattcaactccagaacagattaaagtcaataagtagatggtgtataaataataacatgtcattacatcctgaaaaatgacaaatgtgtggttattgctacgaaatacaaattgagaaataaaaaggaacttaatttaacaattaacaatgtgtttatatagaaaatgttacc
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAATATAAAACAATTATTTATGTCTAAAATAGGACATGCTGATAATATGATTGGGTGTTCCAAAGAGGATTATATAACAATTAGGGCCACTACTTTTTATTTTATGTTTTGTTTCTAAAACTAGAAGTACTGA
Unaligned ( gi|20 ): CACAAGGGTTTATATTAGGACCACTACATTTTCACTTACATATGAATGACATCGCCTTAATTTAATTCTGAAACTTGAAGTATTGATCTCCATTCTGATGGTATCACACTACGTGAAACATCAAG
Unaligned ( gi|21 ): CATACATGCTAAGATGCTTGAATAATAATTAAGTGTTTATCATAAGAATAGTTGTATTTATACATTTTGTTTTGTCGATATTATACAATGTCATAATGTAATAAATAAAGAACGAAAT
Unaligned ( gi|25 ): TACCTTATATCCTTATATTTTATAATATATATAGTATTATAGAATAGAAACTATTTTCTTGTTAAAAGGGAAACACTACAA
Unaligned ( gi|27 ): TTGCTGCAGTTTACATGTATAGTCATACATGCTCAACCCAACCTAG
Unaligned ( gi|28 ): TAATATACATGTGTATTATAAAGGAGCACAAAGAAACAC
Alignments
lowQualScore : 1111 11 222222222222 111111 11111 11 1 111 22222222 11 1 11 11111111 1111111 222222 111111 111111 1111 222222222222 222222 222222222222 111111111111111111111 1 11111 11
lowQualScore : 2222 0 00 77 1 77 11 5 66 5 1 1 1 1 999999999999 77 1 3 1 1 666666 3 99 2 00000 44 1 44 1 1 8 1 1 0 5 2 888 2 5 4 66 000 1 5 55555555 0 1 3 77 4 00 2 00 33333333 4 22 0 2 2 777 5 2 3 88 7 1111111 3 55 777777 222222 66 222222 888 0 0000 55 1 888888888888 0 222222 0 6666 88888 666666666666 777777777777777777777 3 6666 3 3 0 3 3 0 00000 777 4 4 11 4 55 9999 6
lowQualScore : .... . .. .. . .. .. . .. . . . . . ............ .. . . . . ...... . .. . ..... .. . .. . . . . . . . . ... . . . .. ... . . ........ . . . .. . .. . .. ........ . .. . . . ... . . . .. . ....... . .. ...... ...... .. ...... ... . .... .. . ............ . ...... . .... ..... ............ ..................... . .... . . . . . . ..... ... . . .. . .. .... .
lowQualScore : 1111 6 00 99 4 99 44 7 44 7 4 7 4 4 333333333333 99 7 1 0 6 444444 3 44 9 44444 00 6 77 4 0 1 0 6 2 0 4 888 0 0 4 99 000 1 0 66666666 8 4 6 55 4 66 9 33 99999999 4 99 1 0 0 888 7 4 6 66 3 8888888 6 00 222222 888888 11 888888 888 8 6666 00 0 555555555555 9 222222 5 5555 33333 999999999999 333333333333333333333 1 4444 3 6 9 6 1 8 00000 000 0 9 00 0 55 4444 7
consensus : ACGAAATACAAGTT----AAGAAATAAAAAGGAACTTAATTTAATCATTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACCAAA-ATATGTGCCAAATTAAACTNAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGTCAACATTTGNTTATTGTTGTATTGTTT-GG-GAAAACGGTAAACATATACAAAATACAATATATATA-ATCTCAGAAAAGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCAAT---GGCTTCCATTTCCCAAAA-GATGTTTTTT--ATCACACTGCTGTTTTAGTATTTAAAGCTATTAATAATATAGCACCACCC-TAT--ATATCAAACCTTTTTGACATTTTCA-----AATAA-TACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTNCTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-A--TAGCTTTAGTTATAC---ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTACA-----A------ATATATAAAGGCTAA-TATTTGCATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTN---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-ANTTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAGAT-ATTATTAT
Reference ( family-869 ) : ACGAAATACAAGTT----AAGAAATAAAAAGGAACTTAATTTAATCATTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACCAAA-ATATGTGCCAAATTAAACTNAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGTCAACATTTGNTTATTGTTGTATTGTTT-GG-GAAAACGGTAAACATATACAAAATACAATATATATA-ATCTCAGAAAAGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCAAT---GGCTTCCATTTCCCAAAA-GATGTTTTTT--ATCACACTGCTGTTTTAGTATTTAAAGCTATTAATAATATAGCACCACCC-TAT--ATATCAAACCTTTTTGACATTTTCA-----AATAA-TACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTNCTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-A--TAGCTTTAGTTATAC---ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTACA-----A------ATATATAAAGGCTAA-TATTTGCATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTN---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-ANTTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAGAT-ATTATTAT
gi|1 : GCT----ACGAAATAAAAATGAAGTAAATTAAATCATTAACAATGTGTT--TGTAGAAAATGTTACAATTCAGAAATTATTAGGTGTTT---TAGACAAAACCCTATCATGGAAAACTCAGCTTACTGAA-ATATGTGCCAAATTAAACTAAAAAAATAGCCCTTCTTAAAAGAATTTCATATTA------------TTAAAC--ATATGATATGAAAGTATTGTTCTACAATGCCTACATAA------TGTCAACATTTGCTTATTGTTGTTTTGTTT-GGAGAAAAC-GTAAACATATACAAAAT
gi|1 : gaattagctgttctactgtttaaatcatatctctcgaacagaaacaattaattagagtgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgatttattagaactacaaatctaactccaggacagattaaattcaataagcagatggtacacatctaataccatgtcattacatcctgaaaaaaaaatgcatggtaattCCC-TAT--ATATCAAACCTTTT-GAC-TTTTCA-----AATAA-TACATCATATAACTTTCGATAAA---TTGATAGAAAAGATCTCGTTACTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-AAATAGCTTTAGTTATAC----TAGTACAC------TAATATAGAATGCTATACCAGAATCTATAAGACATATTTCAAATATTCACTCATTTAAATGTC--AA------TACAAAAAATACCTTCTCCAA---TCACCTA-----TGATTTGT----GTTATTGTTTGAATAAA-TAGTATAAATATTCA-----A------ATATATAAGGGCTAA-TATTTGCATGCTTTGA--TAAATCGAGTGT-----TTGTCACAA------------GTA---G-----------T-----T-ATACATTT---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAATGCTGTTGCAGAAGGCCATATTAAAAATAT-----GATGTG---AACCTTG-AATTC--AATT-GT--ATTATGTCAATATGTGTTACC----TTCTATAAATAAAGAT-ATTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccctatatatcaaaccttttgacttttcaaataatacatcatataactttcgataaattgatagaaaagatctcgttactcaaaaggcttgcaccaattatttaaaaaaatagctttagttatactagtacactaatatagaatgctataccagaatctataagacatatttcaaatattcactcatttaaatgtcaatacaaaaaataccttctccaatcacctatgatttgtgttattgtttgaataaatagtataaatattcaaatatataagggctaatatttgcatgctttgataaatcgagtgtttgtcacaagtagttatacattttaatttgtaatattatattgtaatgttttaaatgctgttgcagaaggccatattaaaaatatgatgtgaaccttgaattcaattgtattatgtcaatatgtgttaccttctataaataaagatattatt
gi|10 : gaattagctgttctactgtttaaatcatatctctcgaacagaaacaattaattagagtgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgatttattagaactacaaatctaactccaggacagattaaattcaataagcagatggtacacatctaataccatgtcattacatcctgaaaaaaaaatgcatggtaattgctacgaaataaaaatgaagtaaattaaatcattaacaatgtgtttgtagaaaatgttacaattcagaaattattaggtgttttagacaaaaccctatcatggaaaactcagcttactgaaatatgtgccaaattaaactaaaaaaatagcccttcttaaaagaatttcatattattaaacatatgatatgaaagtattgttctacaatgcctacataatgtcaacatttgcttattgttgttttgtttggagaaaacgtaaacatatacaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATAAGACATCTTTCAAAT--TCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----TTTATTGTTTTATTAAAATAGTATAAATGTTAA-----A------ATATATAATAGCTAATTTTTTGCATGCTTT-T--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTG---TA-GTTTG-T-A-ATATTATATTGTAATGTTTTAAATGTTGTTGCACAAGGCCATATTAAAAATAT-----GATGTG---TACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTAACC----TTCTATCAATAAAGAT-AT
gi|11 : AATACAAGTTCTGTAAGCAATACAAAGGAACATAA-------ATTAACAATATGTT--AATAGAAAATGTTACCATTCAGAAATTATTACATGTTTATATAAACAATAGGCTAACACGAAAAAC-------ACCAAAGATAAATATCATATTAG-------------------TTAA--------CATATGA------------T---------ATGAAATAA-----TTGTTTCATAATGCCT-----------------ACATTTGA--------GTATTGTT------------GTAAACATATACAAAATACAATAT-TTTA-AACTAAGAAAAGAGCAGCAAGAATA-TTACCA---AAT-AAACCATTGAA-AACAAATTAT--CAAGAAATGTTC
gi|12 : aattgctatacATATATACAA---TAT-AAACCACTGAA-AACAAATTTT--CAAAAAATGTTCAATGAAATGCAATCATGGCTTCCATTTTCCAAAACGATG-CTATT--ATCACTCTGTTGTTTTAGTATTTAGATCAGTTAATTATATAGCACTCCCCGTAT--CTATGACACC-TTTTGATATTTGCACTTTGAATAA-TACATCATACAATTTATTATCTATTTTTTTTA-AAAATATCTCGTTTTTCATAAGGATTTCACCCATTA-TTT--GTAA-------A-A--TAGGTATAATTATA----ATAGAACA
gi|13 : TTGTTT---TAAATTC-TATAAATGTACATGTGTAC-----ATGTATAAATGCTAA-GAT--ACATGTATTAT--TAAACTGAGTGT-----TTGTCACAA------------GTA---TAGTTGTATTTGT-----TGATACATTT---TA-ATTTG-T-TTATATTGTATTGCATTGTTTTAAATATTGCTGCAGAAGGCCATATTGAAAATATTACAAAATGTATGTTACCTTG-ATTTT--AATA-GT--ATTATATCATAATGTGTTACC----TTCTATAAATAGA
gi|14 : ttA-----A------ATATATAAAGGCTAA-T--TTGCATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTG---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAACGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTGAATTTC--AAAT-GT--ATTATGTCATAATGTGTTACC----TTCTTTAAATAAAGAT-ATTATT
gi|15 : AAACTATTAATAATAAAGCACCA---------------AACCTTTT-GACATTTGTT-----AATAA-TACATCATATAAAT-ACGATC-----------------------------AAAAGGCTTGCACCAATCATTTT--A-AA-------A-A--TAGCTTTAGTTATG----ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTTATATTAATGTC--AA------TATAGAAAT
gi|16 : gGGGTAT-----TTGTCATAAATATAATT----GTA---C-----------C-----T-ATACATTC---TA-ATTTG-TTA-ATATGATATTGCATTGTTGCTAATATTGTTAATGAAGACCACATTGGCAATAT-----GATGTG---TACCTTG-ATTTCAAAATT-AT--ATTATATCATAATGTGTTACC----TTCTATCAGTAA
gi|17 : ------------GTA---C-----------T-----T-ATGTATTTAGATAGATGTG-TTA-ATACTAGATTGCAATGTTTTTAATGTTGT---AGAAGGCCATATGGAAAATAT-----CATATG---TAGCTTG-ATTTCAAAATT-GT--ATTATGTCATAATGTGTCACCCACTTTATATAAATAAA
gi|18 : ttATCTCGTCTCTCAAAAAGCTTGCACCAATTA-TCT--A-AA-------A-A--taaata
gi|2 : atcatccattccagttttatgtttaaatcgtttgcaataaagctgtaacaatagcaagctttttaaactaagtttgtcattccttatacacaggctacattgacACGAAACACAAATA----AAGAAGTAAAAAGGAACTTAATTTTACAGTTATCAAAGTGTC--AATAGAAATTGTTACCATTCAGAAATTGTAAGGTGTTTATA-A---AATATCTTTACATGGGAAACCCAGCTTATCAAA-ATATGTTTCAAATTAAACTTAAA-AATAGCTCCTCTTAAAAGAATACTATATCACCATTTTTTAAGTTTAATAGATATGATATGATATTATTGTTTTACAATGCCAGTATAA------TGTCTACCTTTA--TATTG------------GG-GAAAAC-GCAAACCTATACAAAATATAATGTATACA-AT-TCAGAAAAGTACAGCG---TTA-ATACTACATAGT-AAACCGTTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTATAAT---GGC-TCCATTTTCGAGAA-GATG----TG--ATCACACTACTGTATTAGTATTTAAAGCTATTAATAATATA-C----CCC-TAT--ATATCAAACATTTTT-ACATTTTCA-----AATAA-TACGTCATA----TTACACTTTA---TTGGTAGAAAATACGTCGTTTCACAAAAGGCTTGCACCAAATA-TTT--A-AAACAGAAGA-A--TAACTCTA---ATA----ACGGTACACTGCATGTAATATGGACTGTTATACCGGTATATGTAAGACATATTTCAAGTATTCACTCATTTAAATGTC--AATACACGTATAGAAATCCCCTTC-ACAT---TCACCTAATAAATGATATCT----G---TTGTTTAAATAAAATAGCATAAATGCAC-------------ATATGT-AAGAC---------GCATGTATTAC--TAAACTGGGTGT-----TTGTCATAAGTATAGTTGTACGTA---T-----------T-----T-ATACATTT---TA-CTTTG-TCG-ATATTATATGATAATGTTGTAAATGTTGATAAAGAAGGCCAAAATGAa
gi|22 : ttttatttctgaaactagaagtagtgttcactatgctgatgataccacaatatgtgaaacatcgagtgatttattaaatataccaattgaactctagccaatacttaattgtagaagtagataatgtacaaatactaacataccattacaccctacaataaaacaatggtaattgctAAAGTATTGCACAAATTA-TTT--A-AA-------ATA--TAGCTGTAGTTAT-T---ACAATGCAG------TAATATAGAATACTATATCA
gi|23 : atcCATTTAATAATAAAGTATAACAAGAAATGTTTAATGAATTGCAAT---TGCTTCCATTTTCGAAAA-TATG-TTATT--ATCACACTGCTGTTTTAtagccttgcaaatactc
gi|24 : ATTGTAATTAC-----AAT-TA---TAA-TTG-ATTTC--AATA-GT--ATTTTGTCATAATGTGTTACC----TTCTGTAAATAAAGATAATTATT
gi|26 : AGTACTAT--CGGTATCTATGGGTCACCTTTCAAGTAGCCACTCATTTAAATtttttt
gi|3 : ACGAAATACAAGTT----AAGAAATAAAAATGAACTCAATTTATTCATTAACAATGTGTT--TGTAGAAAATGTTACCACTGAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACTAAA-ATATGTGCCAAATTAAACTTAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGTCAACATTTGATTATTGTTGTATTATTT-TG-GAAAATGGTAAACATATACAAAATATAATATATATATATCTCAGAAAAGAGTAGCGAGAATA-ATACTA---AAT-AAGCCATTGAA-AACAAATTCT--CAAGAAATGTTCAATAAATTGAAAT---GGCTTCCATTTCCCAAAA-GATGTTTTTTTTATCACACTGCTGTTTTAGTATTTAAAGCTATTAA-AATATAGCACCACCC-TAT--ATATCAAACCTTTTTAATATTTTCA-----AAAAAATCCATCATATTACTTACGATCTA---TTGATAGAAAA-ATCTCGTTACGCAAAAGGCTTGCACCGGTTA-TTT--A-AA-------A-A--TAGCTTTAGTTATACTATATAGTACAC------TAATATGAGATGCAATACCAGTATCTATAAGGCATCTTTCAAATATTCACTCATTTAAATGTC--AG------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTTCA-----A------ATTTATTAAGGCTAA-TATTTACATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATATATTG---TA-ATTTG-T-A-ATATTGTAGTGTAATGTTGTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAAAT-ATTATTATc
gi|4 : TAGAAAATGTTACCACCCAGAAATTATTAAGTGTTTATATAGACAATACCCTATCATGAACAA-TCAGCTTATCAAA-ATATGCGCCAAATT--ACTCAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNAA---A-T-AAGCCATTGAA-AACAAACTCT--CAAGAAATGTTCAATAAATTGCAAT---GGCTTCCATTTCCCAAAA-TATG-TTTTT--ATCACACTATTGTTTTAGTATTTAAAGCTATTGAAAATATAGCACTTACC-TATA-ATATCAAACC-TTTTGACATTT------------------TCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTATTCAAAAGGCTTGCACCAATTA-TTTA-A-AA-------A-A--TAAATTTAGTTATAC----TAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATATT--AA------TATAGAAATTACCTTCTCTAA---TTACCTAATAACTGATTTTT----GTTATTTTTTGAATAAAATACTATAAATGTACA-----A------ATATATAAAGGCTA---ATTTGCATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---C-----------T-----T-AAACATTG---TA-ATTTG-T-A-ATATTATATTGTAATGTTTAAAATTTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAAAT-ATTATTAT
gi|5 : ACGAAATACAAGTT----AAGAAATAAAACGGAACTAAATTTAATCATTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTGTCATGGAAAA---A---TACTAAA-ATATGTGCCAAATTAAACTAAAA-AATAGCAATTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGCCAACATTTGCTTATTGTTGTATTGTTTGGG-GGAAAAGGTAAACATATACAAAATACAATATATA-A-ATCTCA-ATTGGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCAAT---GGGTTCCATTTCCCAAAA-GATG--TTTT--ATCACACTCCTGTTTTAGTATTTAAAGCTATTTAAAATAAAGCACCACCG-TAC--ATATAAAACC-TTTTGACATAACCA-----AGTAA-TACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTACTCAAAAGGCTTGCACCAATTA-TTTAAA-AA-------A-A--TAGCTTTAGTTATAC----TAGTACAC------TAATATGAAATGCTATACCAGTATATATAAGACATCTTTCAAATATTCAGTCATTTAAATGTC--AA------CATAGAAATTACCTTCTCTAA---TCACCTAATAAATGCTTTTTGCCCGTTATTGTTTGTAT-AAATAGTATAAATGTACA-----A------ATATATAAAGGCTA---ATTTGCATGCTTTGT--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTG---TA-ATTtattta
gi|6 : gataattgcgACGAAATATAATTA----AAGAATTAAAAAGGAGCTTAATTTAA-------CAATGTGTT--TGTAGCAAATGTTACAATTCAGAAAGTATTAGGTGTTTATAGAGACAAAACCCTATCATGGAAAACTCAGATTACTAAA-ATACGTTTCAAATTAAAC-------A-AGCTCT---------GATATCATATTA------------TTTAAT--ATAAGA----AAAATATTGTTTTCCAATGCCTATATAAAATAAATGTCTACATTTGGTTATTGTTGTATTATCT-GA-GAAAAAGA-AAAAACATA-AAATTACAATATAT-TA-AACTTAAAAATAA--AACGAAAA-A-AAA--A---GATCAAA--ATTGAA-AACAAgg
gi|7 : gaatgaactgttcacttgtttaaatcatatctctcgaatagaaaacatctaaaagcagacatgctttcagtaaaatcgggcgtaccgcaggggtctattttagaaccactacttttgcatttatatatgaatgacgtcgcttttatttctgaaactggaagtactgatctctgtgctaatgataccattacatgtgaaatatcaagtgatttattaaatatacacattcaactacaggacagattaaattcaataggcagatagtgtatacataataacatttcctcctaaaagtaattatggctTTCCAT--ACCAAAA-GATGTTATT---ATGACACTGCTGTATTAGTATTTGAATCTAGTAATGTTACAGCACCACCC-TAT--GTATCAAAACATCCT---ATTT--A-----ATTAA-TA-------------ATGA---A---TTGATAGAA--GATATTGTTTCTCAAAAGGCTTGCACCAATTA-TTT--ATAT-------A-A--AAGCTTTAGTTATA----ACAGTGCAC------TAATCTGGAATGCTGCACCAGTATCTACAAGACATCTTTCA-------ACTCATTT--ATGTCTGAA------AATAAAAATTACCTTCTCCAATGTTTACCTAACAAATGATATTT----GTTGTTGTTTGTATAAAACAGTATAAATGTACATGT--AACATGTATGTATAAATGATAA-GA--TGCATGTATTAC--TGAACTGAGTCT-----TTGTCACAA------------GTAAAGT-----------TGGACAC-ATACATTT---TT-ATTTGTT-G-GTTTCATATTCACATGTT---AATATTGT---AGAAGGCCACACTGAAAAT--------GTGTA---TA-ATTG-A-TTC--AGTTAGTTGATAATTTCACAGTtc
gi|8 : caggTATATGCATTTCA---AAGAGC--TGGGGACA-TTATTC---ACT-A--CCAATGAA-------TTCT--CAAGAAATGTTTAAAGACTTACAAT---GGCTTCCATTTTCCAAAA-TATGTTATT---GTCACACTGATGTATTAGTATATAAACATATTAATAATATAGCACT-----TATTAATAGCA--CCGTTTT-ACACTTTCA-----AATA--TACATCATTTTACTAACTATCTA---TTGATCGAAAAAATCTTGATTCTCAAAATATTTTCCCTCACAA-TCT--A-AA-------A-A--AAGCTTTAGTTATAA---A-AGTACAC------TAACATGGAATGCTATACCAGTATTTATAAGATAGCTTTGAAATATTCACT-ATTTAAATGTG--AA------AGTAAAAATTACCTTCTCCAA---TCACCTTATAGATGTTATTT----GTTGTTGTTGG---ACAGTAGTATGAATGTACA-----T------ATGTATCAATGCTA---AGTTGCATGCATTAC--TTAATTAAGTGTAAGAATTGTT----------------GTA---T-----------T-----T-ATACATTA---Tttag
gi|9 : tCATGCTTT-CTATAAATCGGGCG-------TACCACAA------------GGG---T-----------C-----T-ACA---TG---TA-ATTAG-T-A-ACACTAtgtattg
gi|9 : tctaaaatcagaACGAAATACAAATT----GAGAAATAAAAAGGAACTTAATTTAACAATTAACAATGTGTTTATATAGAAAATGTTACCctttttcgtttatgtatgaacgacatcgcttttatttctggaacttgaagtactgatctctatgataccataatagatgtatatgaagcataaaataattgattagaaatacaaattcaactccagaacagattaaagtcaataagtagatggtgtataaataataacatgtcattacatcctgaaaaatgacaaatgtgtggttattgctacgaaatacaaattgagaaataaaaaggaacttaatttaacaattaacaatgtgtttatatagaaaatgttacc
blockSeqs : CTGT CA TA T CC GC G TT . T T T A CCATTTTTTAAG AG A T T G AATAAA T AT T TGGG TG T AC T C G A A T A CAT A C T AA . T . TTTTTTTT A T AC G TA T TG GCACTTTG A CA T T TTT T T T AA T ACAGAAG T . CTATAT TGCATG TG TACACG TGT GCCC TA A TGTAACATGT ATTTTT CTA AAGAA GTATAGTTGTAC TAGTTGTATTTGT G TAGA G T T T T TACAA TGT A A AA A TG CACT A
blockSeqs : . TC . T CT GC . TT . T C T A . . T A G A . A NN N TTG NN C AT C N G G N . T . G . . . . T . TTATT G T TA . A T TA GTT . TA T T . T T . A T . . . TAC . . . . . AA T TGTGTAC ATATT AT . ATATAATT AAGTTGGACA . G . . T . T . . . T AA . . . .
blockSeqs : . TC . T CT GC . TC . T C T A . . T N N N . N CT T NNN AG T NN . C N N A . T . A . . . . C . TTTTT G A AC . . T TG TCA . TT T T . G T . . . . . . AT . . . . . GA A A AGAT GC . . TT . T . . C . T . . . T . . . . .
blockSeqs : . CA . T C GA . TA . T A T A . . T A G A . A GT T TGA AG N AT . C A G A . A . A . . . . C . TTATT G A AC . . A TG TCA . TA T T . G A . . . . . . AT . . . . . GA A A ATT AC . . TT . G . . . . G . . . T . . . . .
blockSeqs : . . . G T . . . . . T . . . . T A A A . T A . GG C T A . T . G G . T . A . . . . C . TTATT G T A . . G G CCA . TA T T . G A . . . . . . AC . . . . . GT A A ATT GC . . CC . C . . . . T . . . T . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . T . C . . . . A . TTTT T T C . . . T TCA . TT A T . A A . . . . . . CT . . . . . GT A A ATT GC . . CT . T . . . . G . . . T . . . .
blockSeqs : . . . . . . . T . TG C . . . . . T A . . . . . . T . . . . . . CT . . . . . G A A AGA GT . . TT . G . . . . G . . . A . . . .
blockSeqs : . . . . T . . . . . . . T . . . . . . AC . . . . G T AGT AC . . TT . G . . . . T . . . A . . . .
blockSeqs : . . . . . . . AA . . AC . . CT . G . . . . . . . . . . . .
blockSeqs : . . . . . . T . . TT . T . . . .
blockSeqs : . . TT . A .
blockSeqs : . TC . G
blockSeqCons : TGG** AG *** ** ATT***
originalCons : ACGAAATACAAGTT----AAGAAATAAAAAGGAACTTAATTTAATCATTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACCAAA-ATATGTGCCAAATTAAACTNAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGTCAACATTTGNTTATTGTTGTATTGTTT-GG-GAAAACGGTAAACATATACAAAATACAATATATATA-ATCTCAGAAAAGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCAAT---GGCTTCCATTTCCCAAAA-GATGTTTTTT--ATCACACTGCTGTTTTAGTATTTAAAGCTATTAATAATATAGCACCACCC-TAT--ATATCAAACCTTTTTGACATTTTCA-----AATAA-TACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTNCTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-A--TAGCTTTAGTTATAC---ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTACA-----A------ATATATAAAGGCTAA-TATTTGCATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTN---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-ANTTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAGAT-ATTATTAT
finalCons : ACGAAATACAAGTT----AAGAAATAAAAAGGAACTTAATTTAATCATTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACCAAA-ATATGTGCCAAATTAAACTNAAA-AATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACATAA------TGTCAACATTTGNTTATTGTTGTATTGTTTGG--GAAAAAGGTAAACATATACAAAATACAATATATATA-ATCTCAGAAAAGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCAAT---GGCTTCCATTTCCCAAAA-GATGTTTTTT--ATCACACTGCTGTTTTAGTATTTAAAGCTATTAATAATATAGCACCACCC-TAT--ATATCAAACCTTTTTGACATTTTCA-----AATAA-TACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTNCTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-A--TAGCTTTAGTTATAC---ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTACA-----A------ATATATAAAGGCTAATT---TGCATGCTTTGC--TAAATTGAGTGT-----TTGTCACAA------------GTA---T-----------T-----T-ATACATTN---TA-ATTTG-T-A-ATATTATATTGTAATGTTTTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTG---TACCTTG-ANTTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAGAT-ATTATTAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAATATAAAACAATTATTTATGTCTAAAATAGGACATGCTGATAATATGATTGGGTGTTCCAAAGAGGATTATATAACAATTAGGGCCACTACTTTTTATTTTATGTTTTGTTTCTAAAACTAGAAGTACTGA
Unaligned ( gi|20 ): CACAAGGGTTTATATTAGGACCACTACATTTTCACTTACATATGAATGACATCGCCTTAATTTAATTCTGAAACTTGAAGTATTGATCTCCATTCTGATGGTATCACACTACGTGAAACATCAAG
Unaligned ( gi|21 ): CATACATGCTAAGATGCTTGAATAATAATTAAGTGTTTATCATAAGAATAGTTGTATTTATACATTTTGTTTTGTCGATATTATACAATGTCATAATGTAATAAATAAAGAACGAAAT
Unaligned ( gi|25 ): TACCTTATATCCTTATATTTTATAATATATATAGTATTATAGAATAGAAACTATTTTCTTGTTAAAAGGGAAACACTACAA
Unaligned ( gi|27 ): TTGCTGCAGTTTACATGTATAGTCATACATGCTCAACCCAACCTAG
Unaligned ( gi|28 ): TAATATACATGTGTATTATAAAGGAGCACAAAGAAACAC
Alignments
lowQualScore : 1111 11 222222222222 111111 1 111 222 11 1 11 111111111 1111111 222222 111111 111111 1111 222222222222 11111111 222222222222222222222 111111111111111111111 111 11111 11
lowQualScore : 2222 0 00 77 1 77 11 5 66 1 5 1 1 1 999999999999 77 1 3 1 1 666666 3 99 2 5 2 2 1 44 1 1 8 1 1 0 5 2 888 2 5 4 66 000 1 5 888 11 6 0 1 3 77 4 00 2 00 888888888 22 0 2 2 777 5 2 3 88 7 1111111 3 55 777777 222222 66 222222 888 0 0000 55 1 888888888888 0 55 11111111 7777 44 77777 555555555555555555555 444444444444444444444 2 6666 3 3 333 99999 4 0 00000 777 4 4 11 4 55 9999 6
lowQualScore : .... . .. .. . .. .. . .. . . . . . ............ .. . . . . ...... . .. . . . . . .. . . . . . . . . ... . . . .. ... . . ... .. . . . . .. . .. . .. ......... .. . . . ... . . . .. . ....... . .. ...... ...... .. ...... ... . .... .. . ............ . .. ........ .... .. ..... ..................... ..................... . .... . . ... ..... . . ..... ... . . .. . .. .... .
lowQualScore : 1111 6 00 99 4 99 44 7 44 4 7 7 4 4 333333333333 99 7 1 0 6 444444 3 44 9 7 3 3 6 77 4 0 1 0 6 2 0 4 888 0 0 4 99 000 1 0 555 00 2 8 4 6 55 4 66 9 33 333333333 99 1 0 0 888 7 4 6 66 3 8888888 6 00 222222 888888 11 888888 888 8 6666 00 0 555555555555 5 00 00000000 8888 66 77777 444444444444444444444 888888888888888888888 9 0000 1 3 666 11111 4 8 00000 000 0 9 00 0 55 4444 7
consensus : ACGAAATACAAGTT----AAGAAATAAAAAGGAACTTAATTTAATCATTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACCAAA-ATATGTGCCAAATTAAACTNAAAA-ATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACAT------AATGTCAACATTTGNTTATTGTTGTATTGTTT-GGGGAAAAGGTAAACATATACAAAATACAATATATATA-ATCTCAGAAAAGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCAAT---GGCTTCCATTTCCCAAAA-GATG--TTTTTTATCACACTGCTGTTTTAGTATTTAAAGCTATTAATAATATAGCACCACCC-TAT--ATATCAAACCTTTTTGACATTTTC-A-----AATAATACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTNCTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-A--TAGCTTTAGTTATAC---ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTACA-----A------ATATATAAAGGCTA--AT--TT---GCATGCTTTGC--TAA--ATTGAGTGT-----TTGTCACAA------------G--------TA---T-----------T-----T-ATACATTN---TA-ATTTG-T-A-ATATTATA-----TTGTAATGTTTTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTGT---ACCTTG-ANTTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAGAT-ATTATTAT
Reference ( family-869 ) : ACGAAATACAAGTT----AAGAAATAAAAAGGAACTTAATTTAATCATTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACCAAA-ATATGTGCCAAATTAAACTNAAAA-ATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACAT------AATGTCAACATTTGNTTATTGTTGTATTGTTT-GGGAAAAAGGTAAACATATACAAAATACAATATATATA-ATCTCAGAAAAGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCAAT---GGCTTCCATTTCCCAAAA-GATG--TTTTTTATCACACTGCTGTTTTAGTATTTAAAGCTATTAATAATATAGCACCACCC-TAT--ATATCAAACCTTTTTGACATTTTC-A-----AATAATACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTNCTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-A--TAGCTTTAGTTATAC---ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTACA-----A------ATATATAAAGGCTA--AT--TT---GCATGCTTTGC--TAA--ATTGAGTGT-----TTGTCACAA------------G--------TA---T-----------T-----T-ATACATTN---TA-ATTTG-T-A-ATATTATA-----TTGTAATGTTTTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTGT---ACCTTG-ANTTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAGAT-ATTATTAT
gi|1 : GCT----ACGAAATAAAAATGAAGTAAATTAAATCATTAACAATGTGTT--TGTAGAAAATGTTACAATTCAGAAATTATTAGGTGTTT---TAGACAAAACCCTATCATGGAAAACTCAGCTTACTGAA-ATATGTGCCAAATTAAACTAAAAAAATAGCCCTTCTTAAAAGAATTTCATATTA------------TTAAAC--ATATGATATGAAAGTATTGTTCTACAATGCCTACAT------AATGTCAACATTTGCTTATTGTTGTTTTGTTT-GGAGAAAACGTAAACATATACAAAAT
gi|1 : gaattagctgttctactgtttaaatcatatctctcgaacagaaacaattaattagagtgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgatttattagaactacaaatctaactccaggacagattaaattcaataagcagatggtacacatctaataccatgtcattacatcctgaaaaaaaaatgcatggtaattCCC-TAT--ATATCAAACCTTTT-GAC-TTTTC-A-----AATAATACATCATATAACTTTCGATAAA---TTGATAGAAAAGATCTCGTTACTCAAAAGGCTTGCACCAATTA-TTT--A-AA-------A-AAATAGCTTTAGTTATAC----TAGTACAC------TAATATAGAATGCTATACCAGAATCTATAAGACATATTTCAAATATTCACTCATTTAAATGTC--AA------TACAAAAAATACCTTCTCCAA---TCACCTA-----TGATTTGT----GTTATTGTTTGAATAAA-TAGTATAAATATTCA-----A------ATATATAAGGGCTA--ATATTT---GCATGCTTTGA--TAA--ATCGAGTGT-----TTGTCACAA------------G--------TA---G-----------T-----T-ATACATTT---TA-ATTTG-T-A-ATATTATA-----TTGTAATGTTTTAAATGCTGTTGCAGAAGGCCATATTAAAAATAT-----GATGTGA---ACCTTG-AATTC--AATT-GT--ATTATGTCAATATGTGTTACC----TTCTATAAATAAAGAT-ATTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccctatatatcaaaccttttgacttttcaaataatacatcatataactttcgataaattgatagaaaagatctcgttactcaaaaggcttgcaccaattatttaaaaaaatagctttagttatactagtacactaatatagaatgctataccagaatctataagacatatttcaaatattcactcatttaaatgtcaatacaaaaaataccttctccaatcacctatgatttgtgttattgtttgaataaatagtataaatattcaaatatataagggctaatatttgcatgctttgataaatcgagtgtttgtcacaagtagttatacattttaatttgtaatattatattgtaatgttttaaatgctgttgcagaaggccatattaaaaatatgatgtgaaccttgaattcaattgtattatgtcaatatgtgttaccttctataaataaagatattatt
gi|10 : gaattagctgttctactgtttaaatcatatctctcgaacagaaacaattaattagagtgaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatgatttattagaactacaaatctaactccaggacagattaaattcaataagcagatggtacacatctaataccatgtcattacatcctgaaaaaaaaatgcatggtaattgctacgaaataaaaatgaagtaaattaaatcattaacaatgtgtttgtagaaaatgttacaattcagaaattattaggtgttttagacaaaaccctatcatggaaaactcagcttactgaaatatgtgccaaattaaactaaaaaaatagcccttcttaaaagaatttcatattattaaacatatgatatgaaagtattgttctacaatgcctacataatgtcaacatttgcttattgttgttttgtttggagaaaacgtaaacatatacaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATAAGACATCTTTCAAAT--TCACTCATTTAAATGTC--AA------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----TTTATTGTTTTATTAAAATAGTATAAATGTTAA-----A------ATATATAATAGCTA--AT--TTTTTGCATGCTTT-T--TAA--ATTGAGTGT-----TTGTCACAA------------G--------TA---T-----------T-----T-ATACATTG---TA-GTTTG-T-A-ATATTATA-----TTGTAATGTTTTAAATGTTGTTGCACAAGGCCATATTAAAAATAT-----GATGTGT---ACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTAACC----TTCTATCAATAAAGAT-AT
gi|11 : AATACAAGTTCTGTAAGCAATACAAAGGAACATAA-------ATTAACAATATGTT--AATAGAAAATGTTACCATTCAGAAATTATTACATGTTTATATAAACAATAGGCTAACACGAAAAAC-------ACCAAAGATAAATATCATATTAG-------------------TTAA--------CATATGA------------T---------ATGAAATAA-----TTGTTTCATAATGCCT-----------------ACATTTGA--------GTATTGTT-----------GTAAACATATACAAAATACAATAT-TTTA-AACTAAGAAAAGAGCAGCAAGAATA-TTACCA---AAT-AAACCATTGAA-AACAAATTAT--CAAGAAATGTTC
gi|12 : aattgctatacATATATACAA---TAT-AAACCACTGAA-AACAAATTTT--CAAAAAATGTTCAATGAAATGCAATCATGGCTTCCATTTTCCAAAACGATG---CTATTATCACTCTGTTGTTTTAGTATTTAGATCAGTTAATTATATAGCACTCCCCGTAT--CTATGACACC-TTTTGATATTTGC-ACTTTGAATAATACATCATACAATTTATTATCTATTTTTTTTA-AAAATATCTCGTTTTTCATAAGGATTTCACCCATTA-TTT--GTAA-------A-A--TAGGTATAATTATA----ATAGAACA
gi|13 : TTGTTT---TAAATTC-TATAAATGTACATGTGTAC-----ATGTATAAATGCTA--AG--AT---ACATGTATTAT--TAA--ACTGAGTGT-----TTGTCACAA------------G--------TA---TAGTTGTATTTGT-----TGATACATTT---TA-ATTTG-T-TTATATTGTA-----TTGCATTGTTTTAAATATTGCTGCAGAAGGCCATATTGAAAATATTACAAAATGTATGTTACCTTG-ATTTT--AATA-GT--ATTATATCATAATGTGTTACC----TTCTATAAATAGA
gi|14 : ttA-----A------ATATATAAAGGCTA--AT--TT---GCATGCTTTGC--TAA--ATTGAGTGT-----TTGTCACAA------------G--------TA---T-----------T-----T-ATACATTG---TA-ATTTG-T-A-ATATTATA-----TTGTAATGTTTTAAACGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTGT---ACCTTGAATTTC--AAAT-GT--ATTATGTCATAATGTGTTACC----TTCTTTAAATAAAGAT-ATTATT
gi|15 : AAACTATTAATAATAAAGCACCA---------------AACCTTTT-GACATTTGT-T-----AATAATACATCATATAAAT-ACGATC-----------------------------AAAAGGCTTGCACCAATCATTTT--A-AA-------A-A--TAGCTTTAGTTATG----ATAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTTATATTAATGTC--AA------TATAGAAAT
gi|16 : gGGGTAT-----TTGTCATAAATATAATT----G--------TA---C-----------C-----T-ATACATTC---TA-ATTTG-TTA-ATATGATA-----TTGCATTGTTGCTAATATTGTTAATGAAGACCACATTGGCAATAT-----GATGTGT---ACCTTG-ATTTCAAAATT-AT--ATTATATCATAATGTGTTACC----TTCTATCAGTAA
gi|17 : ------------G--------TA---C-----------T-----T-ATGTATTTAGATAGATGTG-TTA-ATACTAGA-----TTGCAATGTTTTTAATGTTGT---AGAAGGCCATATGGAAAATAT-----CATATGT---AGCTTG-ATTTCAAAATT-GT--ATTATGTCATAATGTGTCACCCACTTTATATAAATAAA
gi|18 : ttATCTCGTCTCTCAAAAAGCTTGCACCAATTA-TCT--A-AA-------A-A--taaata
gi|2 : atcatccattccagttttatgtttaaatcgtttgcaataaagctgtaacaatagcaagctttttaaactaagtttgtcattccttatacacaggctacattgacACGAAACACAAATA----AAGAAGTAAAAAGGAACTTAATTTTACAGTTATCAAAGTGTC--AATAGAAATTGTTACCATTCAGAAATTGTAAGGTGTTTATA-A---AATATCTTTACATGGGAAACCCAGCTTATCAAA-ATATGTTTCAAATTAAACTTAAAA-ATAGCTCCTCTTAAAAGAATACTATATCACCATTTTTTAAGTTTAATAGATATGATATGATATTATTGTTTTACAATGCCAGTAT------AATGTCTACCTTTA--TA------------TT-GGGGAAAACGCAAACCTATACAAAATATAATGTATACA-AT-TCAGAAAAGTACAGCG---TTA-ATACTACATAGT-AAACCGTTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTATAAT---GGC-TCCATTTTCGAGAA-GATG------TGATCACACTACTGTATTAGTATTTAAAGCTATTAATAATATA-C----CCC-TAT--ATATCAAACATTTTT-ACATTTTC-A-----AATAATACGTCATA----TTACACTTTA---TTGGTAGAAAATACGTCGTTTCACAAAAGGCTTGCACCAAATA-TTT--A-AAACAGAAGA-A--TAACTCTA---ATA----ACGGTACACTGCATGTAATATGGACTGTTATACCGGTATATGTAAGACATATTTCAAGTATTCACTCATTTAAATGTC--AATACACGTATAGAAATCCCCTTC-ACAT---TCACCTAATAAATGATATCT----G---TTGTTTAAATAAAATAGCATAAATGCAC-------------ATATGT-AAGAC-------------GCATGTATTAC--TAA--ACTGGGTGT-----TTGTCATAAGTATAGTTGTACG--------TA---T-----------T-----T-ATACATTT---TA-CTTTG-TCG-ATATTATA-----TGATAATGTTGTAAATGTTGATAAAGAAGGCCAAAATGAa
gi|21 : ttttatttctgaaactagaagtagtgttcactatgctgatgataccacaatatgtgaaacatcgagtgatttattaaatataccaattgaactctagccaatacttaattgtagaagtagataatgtacaaatactaacataccattacaccctacaataaaacaatggtaattgctATACATGCTA--A--------G-ATGCTTGAA--TAATAATTAAGTGT-----TTATCATAA------------GAATAGTTGTA---T-----------T-----T-ATACATTT---TG-TTTTG-TCG-ATATTATACAATGTCATAATGTAATAAAT
gi|22 : cAAAGTATTGCACAAATTA-TTT--A-AA-------ATA--TAGCTGTAGTTAT-T---ACAATGCAG------TAATATAGAATACTATATCAaaagaacgaaat
gi|23 : atcCATTTAATAATAAAGTATAACAAGAAATGTTTAATGAATTGCAAT---TGCTTCCATTTTCGAAAA-TATG---TTATTATCACACTGCTGTTTTAtagccttgcaaatactc
gi|24 : ATTGTAATTAC-----AAT-TAT---AA-TTG-ATTTC--AATA-GT--ATTTTGTCATAATGTGTTACC----TTCTGTAAATAAAGATAATTATT
gi|26 : AGTACTAT--CGGTATCTATGGGTCACCTTTCAAGTAGCCACTCATTTAAATtttttt
gi|3 : ACGAAATACAAGTT----AAGAAATAAAAATGAACTCAATTTATTCATTAACAATGTGTT--TGTAGAAAATGTTACCACTGAGAAATTATTAGGTGTTTATATAGACAATACCCTATCATGGAAAACTCAGCTTACTAAA-ATATGTGCCAAATTAAACTTAAAA-ATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACAT------AATGTCAACATTTGATTATTGTTGTATTATTT-TGGAAAATGGTAAACATATACAAAATATAATATATATATATCTCAGAAAAGAGTAGCGAGAATA-ATACTA---AAT-AAGCCATTGAA-AACAAATTCT--CAAGAAATGTTCAATAAATTGAAAT---GGCTTCCATTTCCCAAAA-GATGTTTTTTTTATCACACTGCTGTTTTAGTATTTAAAGCTATTAA-AATATAGCACCACCC-TAT--ATATCAAACCTTTTTAATATTTTCAA-----AAAAATCCATCATATTACTTACGATCTA---TTGATAGAAAA-ATCTCGTTACGCAAAAGGCTTGCACCGGTTA-TTT--A-AA-------A-A--TAGCTTTAGTTATACTATATAGTACAC------TAATATGAGATGCAATACCAGTATCTATAAGGCATCTTTCAAATATTCACTCATTTAAATGTC--AG------TATAGAAATTACCTTCTCCAA---TCACCTAATAAATGATTTTT----GTTATTGTTTGAATAAAATAGTATAAATGTTCA-----A------ATTTATTAAGGCTAATAT--TT---ACATGCTTTGC--TAA--ATTGAGTGT-----TTGTCACAA------------G--------TA---T-----------T-----T-ATATATTG---TA-ATTTG-T-A-ATATTGTA-----GTGTAATGTTGTAAATGTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTGT---ACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAAAT-ATTATTATc
gi|4 : TAGAAAATGTTACCACCCAGAAATTATTAAGTGTTTATATAGACAATACCCTATCATGAACAA-TCAGCTTATCAAA-ATATGCGCCAAATT--ACTCAAAA-ATAGCCCTTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNAA---A-T-AAGCCATTGAA-AACAAACTCT--CAAGAAATGTTCAATAAATTGCAAT---GGCTTCCATTTCCCAAAA-TATG---TTTTTATCACACTATTGTTTTAGTATTTAAAGCTATTGAAAATATAGCACTTACC-TATA-ATATCAAACC-TTTTGACATTT------------------TCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTATTCAAAAGGCTTGCACCAATTA-TTTA-A-AA-------A-A--TAAATTTAGTTATAC----TAGTACAC------TAATATGGAATGCTATACCAGTATCTATAAGACATCTTTCAAATATTCACTCATTTAAATATT--AA------TATAGAAATTACCTTCTCTAA---TTACCTAATAACTGATTTTT----GTTATTTTTTGAATAAAATACTATAAATGTACA-----A------ATATATAAAGGCTA--AT--TT---GCATGCTTTGC--TAA--ATTGAGTGT-----TTGTCACAA------------G--------TA---C-----------T-----T-AAACATTG---TA-ATTTG-T-A-ATATTATA-----TTGTAATGTTTAAAATTTTGTTGCAGAAGGCCATATTGAAAATAT-----GATGTGT---ACCTTG-AATTC--AATT-GT--ATTATGTCATAATGTGTTACC----TTCTATAAATAAAAAT-ATTATTAT
gi|5 : ACGAAATACAAGTT----AAGAAATAAAACGGAACTAAATTTAATCATTAACAATGTGTT--TGTAGAAAATGTTACCACTCAGAAATTATTAGGTGTTTATATAGACAATACCCTGTCATGGAAAA---A---TACTAAA-ATATGTGCCAAATTAAACTAAAAA-ATAGCAATTCTTAAAAGAATATCATATTA------------TTTAAC--ATATGATATGAAAGTATTGTTTTACAATGCCTACAT------AATGCCAACATTTGCTTATTGTTGTATTGTTTGGGGGAAAAGGTAAACATATACAAAATACAATATATA-A-ATCTCA-ATTGGAGCAGCGAGAATA-ATACTA---AAT-AAACCATTGAA-AACAAATTCT--CAAGAAATGTTCAATGAATTGCAAT---GGGTTCCATTTCCCAAAA-GATG----TTTTATCACACTCCTGTTTTAGTATTTAAAGCTATTTAAAATAAAGCACCACCG-TAC--ATATAAAACC-TTTTGACATAACC-A-----AGTAATACATCATATAACTTACGATCTA---TTGATAGAAAAGATCTCGTTACTCAAAAGGCTTGCACCAATTA-TTTAAA-AA-------A-A--TAGCTTTAGTTATAC----TAGTACAC------TAATATGAAATGCTATACCAGTATATATAAGACATCTTTCAAATATTCAGTCATTTAAATGTC--AA------CATAGAAATTACCTTCTCTAA---TCACCTAATAAATGCTTTTTGCCCGTTATTGTTTGTAT-AAATAGTATAAATGTACA-----A------ATATATAAAGGCTA--AT--TT---GCATGCTTTGT--TAA--ATTGAGTGT-----TTGTCACAA------------G--------TA---T-----------T-----T-ATACATTG---TA-ATTtattta
gi|6 : gataattgcgACGAAATATAATTA----AAGAATTAAAAAGGAGCTTAATTTAA-------CAATGTGTT--TGTAGCAAATGTTACAATTCAGAAAGTATTAGGTGTTTATAGAGACAAAACCCTATCATGGAAAACTCAGATTACTAAA-ATACGTTTCAAATTAAAC--A------AGCTCT---------GATATCATATTA------------TTTAAT--ATAAGA----AAAATATTGTTTTCCAATGCCTATATAAAATAAATGTCTACATTTGGTTATTGTTGTATTATCT-GAGAAAAAGA-AAAAACATA-AAATTACAATATAT-TA-AACTTAAAAATAA--AACGAAAA-A-AAA--A---GATCAAA--ATTGAA-AACAAgg
gi|7 : gaatgaactgttcacttgtttaaatcatatctctcgaatagaaaacatctaaaagcagacatgctttcagtaaaatcgggcgtaccgcaggggtctattttagaaccactacttttgcatttatatatgaatgacgtcgcttttatttctgaaactggaagtactgatctctgtgctaatgataccattacatgtgaaatatcaagtgatttattaaatatacacattcaactacaggacagattaaattcaataggcagatagtgtatacataataacatttcctcctaaaagtaattatggctTTCCAT--ACCAAAA-GATG--TTATT-ATGACACTGCTGTATTAGTATTTGAATCTAGTAATGTTACAGCACCACCC-TAT--GTATCAAAACATCCT---ATTT---A-----ATTAATA-------------ATGA---A---TTGATAGAA--GATATTGTTTCTCAAAAGGCTTGCACCAATTA-TTT--ATAT-------A-A--AAGCTTTAGTTATA----ACAGTGCAC------TAATCTGGAATGCTGCACCAGTATCTACAAGACATCTTTCA-------ACTCATTT--ATGTCTGAA------AATAAAAATTACCTTCTCCAATGTTTACCTAACAAATGATATTT----GTTGTTGTTTGTATAAAACAGTATAAATGTACATGT--AACATGTATGTATAAATGATA--AG--AT---GCATGTATTAC--TGA--ACTGAGTCT-----TTGTCACAA------------G--------TAAAGT-----------TGGACAC-ATACATTT---TT-ATTTGTT-G-GTTTCATA-----TTCACATGTT---AATATTGT---AGAAGGCCACACTGAAAAT--------GTGTAT---A-ATTG-A-TTC--AGTTAGTTGATAATTTCACAGTtc
gi|8 : caggTATATGCATTTCA---AAGAGC--TGGGGACA-TTATTC---ACT-A--CCAATGAA-------TTCT--CAAGAAATGTTTAAAGACTTACAAT---GGCTTCCATTTTCCAAAA-TATG--TTATT-GTCACACTGATGTATTAGTATATAAACATATTAATAATATAGCACT-----TATTAATAGCA--CCGTTTT-ACACTTTC-A-----AATA-TACATCATTTTACTAACTATCTA---TTGATCGAAAAAATCTTGATTCTCAAAATATTTTCCCTCACAA-TCT--A-AA-------A-A--AAGCTTTAGTTATAA---A-AGTACAC------TAACATGGAATGCTATACCAGTATTTATAAGATAGCTTTGAAATATTCACT-ATTTAAATGTG--AA------AGTAAAAATTACCTTCTCCAA---TCACCTTATAGATGTTATTT----GTTGTTGTTGG---ACAGTAGTATGAATGTACA-----T------ATGTATCAATGCTA--AG--TT---GCATGCATTAC--TTA--ATTAAGTGTAAGAATTGTT----------------G--------TA---T-----------T-----T-ATACATTA---Tttag
gi|9 : tCATGCTTT-CTATAA--ATCGGGCG-------TACCACAA------------G--------GG---T-----------C-----T-ACA---TG---TA-ATTAG-T-A-ACACTAtgtattg
gi|9 : tctaaaatcagaACGAAATACAAATT----GAGAAATAAAAAGGAACTTAATTTAACAATTAACAATGTGTTTATATAGAAAATGTTACCctttttcgtttatgtatgaacgacatcgcttttatttctggaacttgaagtactgatctctatgataccataatagatgtatatgaagcataaaataattgattagaaatacaaattcaactccagaacagattaaagtcaataagtagatggtgtataaataataacatgtcattacatcctgaaaaatgacaaatgtgtggttattgctacgaaatacaaattgagaaataaaaaggaacttaatttaacaattaacaatgtgtttatatagaaaatgttacc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AAATATAAAACAATTATTTATGTCTAAAATAGGACATGCTGATAATATGATTGGGTGTTCCAAAGAGGATTATATAACAATTAGGGCCACTACTTTTTATTTTATGTTTTGTTTCTAAAACTAGAAGTACTGA
Unaligned ( gi|20 ): CACAAGGGTTTATATTAGGACCACTACATTTTCACTTACATATGAATGACATCGCCTTAATTTAATTCTGAAACTTGAAGTATTGATCTCCATTCTGATGGTATCACACTACGTGAAACATCAAG
Unaligned ( gi|25 ): TACCTTATATCCTTATATTTTATAATATATATAGTATTATAGAATAGAAACTATTTTCTTGTTAAAAGGGAAACACTACAA
Unaligned ( gi|27 ): TTGCTGCAGTTTACATGTATAGTCATACATGCTCAACCCAACCTAG
Unaligned ( gi|28 ): TAATATACATGTGTATTATAAAGGAGCACAAAGAAACAC