lowQualScore : 1 999999999999999999999 1 1 11 1 1111 1 11 1 11 1 1 1 11 2 1 1 1 33 11 1 22 1111 444444444444444444444
lowQualScore : 5 222222222222222222222 7 6 7 55 6 7 6 0 2 7777 4 2 6 6 5 0 66 0 0 1 1 1 7 1 22 1 5 0 6 1 3 1 1 6 6 5 44 8 5 1 2 00 11 44 7 22 2 4444 99 6 99 99 333333333333333333333 3
lowQualScore : . ..................... . . . .. . . . . . .... . . . . . . .. . . . . . . . .. . . . . . . . . . . . .. . . . . .. .. .. . .. . .... .. . .. .. ..................... .
lowQualScore : 0 777777777777777777777 3 3 0 77 0 0 0 6 8 0000 5 5 0 0 0 8 00 6 8 0 4 4 0 4 00 4 0 8 0 8 0 4 0 0 0 0 44 6 4 4 0 00 00 22 0 77 5 2222 22 7 22 22 000000000000000000000 2
consensus : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TG-CT-CCC-TGTTTTTCGGGCTAGGTATGAA-AAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTA--TG-AATT--AT--AT--------TATA-T---A-T-ATATGTACACACAC
Reference ( gi|4 ) : CAGGCCCGTATCTACTCTGAGGCACAGGGAGGCCAGTGCCT-CCC-TGTTTTTCGGGCTTGGAATGAGCAAAATTGAGGCACTGTATTTTATATCTTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTGTTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTAATTGACCACAAGCCCACACTGAAGCTAGACATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTTTACCAACGTGTTGACAGTATTGCATCCTCACTCGACATTATCCCATATAAACCACAAACTACGGGAAGACAATAATATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTGATTTTACCTGTTTCTATATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAACACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTA-ACTTACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGACCTGTCTATTACAAGTAATTTCGACAAGAACTGGATT-GTTGGAAAAATGCAATATCTTTTGATGATATTCCATTAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTA--TG-AATT--AT--AT--------CATA-T---A-T-ATATGTACACACAC
gi|5 : CAGGCCTATAGCTACTCTGAGGCACAGGGAGG----TGCCT-CCCCTATTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGTAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATCTT-----TGAT-CTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACGCTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTGCGTTCTGAAAGCAGGTGGGGTTTATTATACCAACATGCCGACTGTATTGCATCCTCACTGGACATTATCCAATATAAACCACGAACTACGGGAAGACAATAACATCGTGTGCATGCTGGCAATTCTGA-GCTGTTACTGACTACTTCAAAATAAATTAATTTTACCCGTTTCTAGATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTACTTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGAT
gi|1 : acaCAGGCCCGTAGCTACTCTGTGGC
gi|12 : CAGGCCCGTAGCTACTCTGATGCAC-------------------T-TGTTTTTCGGGCTAGGTATGAA-AAAATTGAGGCACTATATTTAATATCCTTGTTACGTTTTAAAACTAAATACATTATGATACCCATATGGAGTATTGGTCAGACAGCACACGATGTCTTAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGAtgggtatgaaaaaaattgaggcactatatttaatatccttgttacattttaaaactaaataaattatgatactcagatgaagtattggtcaatcagcacacgatgtcttaatattttttttttgctatggatggaagactttgattttattattgctgctgttttgacccagcatattctagactacactagaccattgtctgcaagcttacaatcaaaatactgtgattgactacaagcccacactgaagctagaaattagtcagtactttagaaaagcttccatctgaaagcatatggggtttgtaataccaacgtgccggcagtattgtatcctcactggacattatgtcatataaccaggaactacgggaagacaaaaacatcatgcgcatgctggcaaatctgaggctgttactgactacttccgaatgaattaattttacccgtttctagatcacatttttcaactcattaaatttaatcaaaggttttctgacttacgcgatgttctgaacaggtgtttgttacttccaggtaacataagtaggctaacaccagaaattggacttttttctctcttaagaaatgtctattacaagtaactttgacaagaactggatcgttggaaaaatccagtatctcttgatgatatatcagcaagtcttgtaagataagtgcagttatgaattatattatagatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatatttacataccgcatcttaccataacataaaaaaataatatatctactaagactttggactaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|1 : taacAGGCCCGTAGCTACTC-TGT------GGCTGGGTATGAAAAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAATCAGCACACGATGTCTTAATATTTTTTTTTTGCTATGGATGGAAGACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGCAAGCTTACAATCAAAATACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCCATCTGAAAGCATATGGGGTTTGTAATACCAACGTGCCGGCAGTATTGTATCCTCACTGGACATTATGTCATATAA-CCAGGAACTACGGGAAGACAAAAACATCATGCGCATGCTGGCAAATCTGAGGCTGTTACTGACTACTTCCGAATGAATTAATTTTACCCGTTTCTAGATCACATTTTTCAACTCATTAAATTTAATCAAAGGTTTTCTGACTTACGCGATGTTCTGAACAGGTGTTTGTTACTTCCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTTGACAAGAACTGGATC-GTTGGAAAAATCCAGTATCTCTTGATGATATATCAGCAAGTCTTGTA--------AGATAAGTGCAG----TTA--TG-AATT--AT--AT--------TATA-G---A-T-AT
gi|16 : cGAGGAACTACATTTATTAGCCTTGTTAAATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGGTGTCTCAAT----TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatatttacataccgcatcttaccataacataaaaaaataatatatctactaagactttggactaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|6 : GCACTATATTTAATATCCTTGTTATATTTTAAAACTAAATACATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATATCTCAAT----TTATTTTTCTAGGGCTGGAAAAGTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTATACCATTGTCTGTAAGCTTACAATCAAAAGACTATGATTGGCTGCAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTATGTTCTGGAAGCACGTGGGGTTTATTATACCAATGTGCCGACTGTATTGCATCCTCACTGGACATTATCCCATATAAACCATGAACTAAGGGAAGACAAAAATATTGTGTGTATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTAATTTTACCCGTTTTTTGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAATACATGATGTTCTGAATGGGTGTTTGTTACTACCAGGTAGCATAAGTAGACTAACACCAGAAA-TTGGATTTT
gi|3 : GCATATTCTAGTCTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGATTGTGATTGACTACAAGCC--CAC---------------------ACT-----GAAGCTTTGTTCTGAAAGCACGTGGGGTTTATTATACCATCTTGCCAGAAGTATTGCATCCTCACTAGACATGATCCCATGTAAACCACGAACTACGGAAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGCTACTGACTATTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCACTTAATTTAATTAAAGGTTTTCCGAATTACGTGATGTTCTAAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAAATA-TTGGATTTTTTT--TCTCTTAAGAAATGTCTATTACAAGTATCTTCGACAAGAACTGAATC-GTTGGAAAAAAGCAGTTTCTTTTGATAATATACCAACAAGTCTTATAGGCGTGTAAGATAAGTGCAG----TTA--TG-AATT--AT--AT--------TATA-A---A-T-ATATGTATATACAC
gi|2 : AGACCATTGTCTGTAAACTTACAATCAAAAGACTGTGATTGACTACAGGCCAACACTGAAGCTAGAATTTCGTCAGTACTTTAGAAAAGCTTCAATTCGAAAGCATGTGGGGTTTATTATGCCATAGTGCCGACAGTATTGCATCCTCACTGGACATTATTCCATGTAAACCACGAACTAGGATAAGACAAAAACATAGTAGGCATGCAGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCAATTCTAGATCATATTTTACAACTCAATTAATTGAATCAAAGGTTTACCGAATTACGTGATGTTATGAACAGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACTAGAAA-TTGGA-TTTTTTTCTCCCTTAAGAAATATCTATTACAAGTAACTTCGGTAAGAACTGGATCAATTTGAAAAATGC-ATATCTTTTAATGATAAACCAACAAGTGTTATAGGCGTGTTACAAAAGTGCAGAAGTTTA--TG-AATTACAC--AT--------CACA-TCACA-TCACAT-TACATACACcataacataaaaaaataatatatatctactaaaactttggactagaaacgtgatattatgatggtcatacgtgcatctctgtattgtcataaatgaaccacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|8 : TCCGAATTAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGACTTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACAT-AGTAGGCTCACACTAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATATCTATTACAAGTAATTTCGACAAGAACTGGATC-GTTGGAAAAATGCCGTATCTTTTGATGATATACCAACAAGTCT--------TGTTAGATAAGTGCAG----TTAAGTGTAGTT--ATGAAT--------C----------------GCACACACACatatatacatatcaaatcaattcgtaataagtgactatatttacataccacctcttaccttaacataaaaatattatatatccactaagactttggactagaaacttaatcttatgttggtcataagtgcatatatgtattgtcataaatgaataacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|13 : ATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTGTTAAGAAATGTCTATTACAAGTAATTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGAac
gi|14 : TGTCCATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTTTCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTA--TG-AATT--AT--A----------ATACT---AGT-ATATATA
gi|7 : aTTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTA--TG-AATT--AT--ATTATATATATATA-T---A-T-ATATGTATACACACaataa
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TATATATATGTATATACACAATAGCATAAAAAAATAAAATATATCTAATAAGATTTTGGACTAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Unaligned ( gi|10 ): TTTACCCTACACTCTAAAAAATAATATATATCTACTAAGACTTTGGACTAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): TATATGTATATACACAATATCATAACAAAATAATATATATCTACTAAGACTTTGGACTAGAAATCTTGATCTTATGATGGCAATAAGTGCATCTATGTATTGTCATAAATGAACCACTTGAAAAGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|15 ): TATGTACACGTATTATATTAATTCATAGGAAATGACTATATTTACATATCACCACTTACCATCACATAAAAATAATATATATCTACTAGGACTCTGGACTAGAAA
Unaligned ( gi|17 ): TCAGACGTGTTCATGGACTTTTATCATATATATTTTTTAACAATAAATAANNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): TCAGACGTGTTCATTGACTTTTATCATATATATTTTTTAAAAATTAA
Unaligned ( gi|19 ): TCAGACGTGTTCATAGACTTTTATCATATATATTTTTAAAAAGTAAA
Unaligned ( gi|20 ): TCAGACGTGTTCATAGACTTTTGTCATATATTTTTGTTAAAATAA
Unaligned ( gi|21 ): GACGTGTTCATGGACTTTTATCATATGTATTTTTTAAAAATAAAT
Alignments
lowQualScore : 88888888888888888888 2 1 1111 1 1111 2222222222 1111 1111
lowQualScore : 2 2 99999999999999999999 3 1 0 0 4444 3 2 1 8 0 9 4 0 2222 77 1111111111 2222 1111 5
lowQualScore : . . .................... . . . . .... . . . . . . . . .... .. .......... .... .... .
lowQualScore : 5 5 55555555555555555555 2 2 0 0 2222 8 5 0 8 0 4 4 7 1111 99 1111111111 1111 9999 7
consensus : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGC-C--CCCTGTTTTTCGGGCTAGGTATGAGCAAAA-TTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
Reference ( family-8679 ) : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGC-T--CCCTGTTTTTCGGGCTAGGTATGAA-AAAA-TTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
gi|1 : CAGGCCCGTAGCTACT-----------------------------CTGT------GGCTGGGTATGAA-AAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAATCAGCACACGATGTCTTAATATTTTTTTTTTGCTATGGATGGAAGACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGCAAGCTTACAATCAAAATACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCCATCTGAAAGCATATGGGGTTTGTAATACCAACGTGCCGGCAGTATTGTATCCTCACTGGACATTATGTCATAT-AACCAGGAACTACGGGAAGACAAAAACATCATGCGCATGCTGGCAAATCTGAGGCTGTTACTGACTACTTCCGAATGAATTAATTTTACCCGTTTCTAGATCACATTTTTCAACTCATTAAATTTAATCAAAGGTTTTCTGACTTACGCGATGTTCTGAACAGGTGTTTGTTACTTCCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTTGACAAGAACTGGATC-GTTGGAAAAATCCAGTATCTCTTGATGATATATCAGCAAGTCTTGTA--------AGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAG---AT-AT
gi|12 : CAGGCCCGTAGCTACTCTGATGCAC--------------------TTGTTTTTCGGGCTAGGTATGAA-AAAA-TTGAGGCACTATATTTAATATCCTTGTTACGTTTTAAAACTAAATACATTATGATACCCATATGGAGTATTGGTCAGACAGCACACGATGTCTTAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatatttacataccgcatcttaccataacataaaaaaataatatatctactaagactttggactaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|13 : taacATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTGTTAAGAAATGTCTATTACAAGTAATTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGA
gi|14 : ATGTCCATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTTTCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-A--------TACTAGTAT---AT-ATA
gi|16 : GAGGAACTACATTTATTAGCCTTGTTAAATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGGTGTCTCAAT----TTaataa
gi|2 : AGACCATTGTCTGTAAACTTACAATCAAAAGACTGTGATTGACTACAGGCCAACACTGAAGCTAGAATTTCGTCAGTACTTTAGAAAAGCTTCAATTCGAAAGCATGTGGGGTTTATTATGCCATAGTGCCGACAGTATTGCATCCTCACTGGACATTATTCCATGTAAACCACGAACTAGGATAAGACAAAAACATAGTAGGCATGCAGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCAATTCTAGATCATATTTTACAACTCAATTAATTGAATCAAAGGTTTACCGAATTACGTGATGTTATGAACAGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACTAGAAA-TTGGA-TTTTTTTCTCCCTTAAGAAATATCTATTACAAGTAACTTCGGTAAGAACTGGATCAATTTGAAAAATGCA-TATCTTTTAATGATAAACCAACAAGTGTTATAGGCGTGTTACAAAAGTGCAGAAGTTTATGAATTACACA-T--------CA----CATCACATCACAT-TACATACAC
gi|3 : GCATATTCTAGTCTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGATTGTGATTGACTACAAGCC--CAC---------------------ACT-----GAAGCTTTGTTCTGAAAGCACGTGGGGTTTATTATACCATCTTGCCAGAAGTATTGCATCCTCACTAGACATGATCCCATGTAAACCACGAACTACGGAAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGCTACTGACTATTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCACTTAATTTAATTAAAGGTTTTCCGAATTACGTGATGTTCTAAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAAATA-TTGGATTTTTTT--TCTCTTAAGAAATGTCTATTACAAGTATCTTCGACAAGAACTGAATC-GTTGGAAAAAAGCAGTTTCTTTTGATAATATACCAACAAGTCTTATAGGCGTGTAAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAA---AT-ATATGTATATACACatatatacatatcaaatcaattcgtaataagtgactatatttacataccacctcttaccttaacataaaaatattatatatccactaagactttggactagaaacttaatcttatgttggtcataagtgcatatatgtattgtcataaatgaataacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : CAGGCCCGTATCTACTCTGAGGCACAGGGAGGCCAGTGCCT--CCCTGTTTTTCGGGCTTGGAATGAGCAAAA-TTGAGGCACTGTATTTTATATCTTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTGTTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTAATTGACCACAAGCCCACACTGAAGCTAGACATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTTTACCAACGTGTTGACAGTATTGCATCCTCACTCGACATTATCCCATATAAACCACAAACTACGGGAAGACAATAATATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTGATTTTACCTGTTTCTATATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAACACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTA-ACTTACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGACCTGTCTATTACAAGTAATTTCGACAAGAACTGGATT-GTTGGAAAAATGCAATATCTTTTGATGATATTCCATTAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------CA----TAT---AT-ATATGTACACACACcataacataaaaaaataatatatatctactaaaactttggactagaaacgtgatattatgatggtcatacgtgcatctctgtattgtcataaatgaaccacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : CAGGCCTATAGCTACTCTGAGGCACAGGGAGG----TGC-CTCCCCTATTTTTCGGGCTAGGTATGAGCAAAA-TTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGTAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATCTT-----TGAT-CTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACGCTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTGCGTTCTGAAAGCAGGTGGGGTTTATTATACCAACATGCCGACTGTATTGCATCCTCACTGGACATTATCCAATATAAACCACGAACTACGGGAAGACAATAACATCGTGTGCATGCTGGCAATTCTGA-GCTGTTACTGACTACTTCAAAATAAATTAATTTTACCCGTTTCTAGATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTACTTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGAT
gi|6 : acaGCACTATATTTAATATCCTTGTTATATTTTAAAACTAAATACATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATATCTCAAT----TTATTTTTCTAGGGCTGGAAAAGTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTATACCATTGTCTGTAAGCTTACAATCAAAAGACTATGATTGGCTGCAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTATGTTCTGGAAGCACGTGGGGTTTATTATACCAATGTGCCGACTGTATTGCATCCTCACTGGACATTATCCCATATAAACCATGAACTAAGGGAAGACAAAAATATTGTGTGTATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTAATTTTACCCGTTTTTTGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAATACATGATGTTCTGAATGGGTGTTTGTTACTACCAGGTAGCATAAGTAGACTAACACCAGAAA-TTGGATTTT
gi|7 : TTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-TTATATATATA----TAT---AT-ATATGTATACACAC
gi|8 : tTCCGAATTAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGACTTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACAT-AGTAGGCTCACACTAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATATCTATTACAAGTAATTTCGACAAGAACTGGATC-GTTGGAAAAATGCCGTATCTTTTGATGATATACCAACAAGTCT--------TGTTAGATAAGTGCAG----TT---AAGT--GTAGT--------TA----TGA---AT----CGCACACACACagaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TATATATATGTATATACACAATAGCATAAAAAAATAAAATATATCTAATAAGATTTTGGACTAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Unaligned ( gi|10 ): TTTACCCTACACTCTAAAAAATAATATATATCTACTAAGACTTTGGACTAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): TATATGTATATACACAATATCATAACAAAATAATATATATCTACTAAGACTTTGGACTAGAAATCTTGATCTTATGATGGCAATAAGTGCATCTATGTATTGTCATAAATGAACCACTTGAAAAGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|15 ): TATGTACACGTATTATATTAATTCATAGGAAATGACTATATTTACATATCACCACTTACCATCACATAAAAATAATATATATCTACTAGGACTCTGGACTAGAAA
Unaligned ( gi|17 ): TCAGACGTGTTCATGGACTTTTATCATATATATTTTTTAACAATAAATAANNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): TCAGACGTGTTCATTGACTTTTATCATATATATTTTTTAAAAATTAA
Unaligned ( gi|19 ): TCAGACGTGTTCATAGACTTTTATCATATATATTTTTAAAAAGTAAA
Unaligned ( gi|20 ): TCAGACGTGTTCATAGACTTTTGTCATATATTTTTGTTAAAATAA
Unaligned ( gi|21 ): GACGTGTTCATGGACTTTTATCATATGTATTTTTTAAAAATAAAT
Alignments
lowQualScore : 8888888888888888888 1111 1 1111 2222222222 1111 1111
lowQualScore : 2 2 5555555555555555555 3 1 8 4444 3 2 1 8 0 9 4 0 2222 77 1111111111 2222 1111 5
lowQualScore : . . ................... . . . .... . . . . . . . . .... .. .......... .... .... .
lowQualScore : 5 5 2222222222222222222 2 2 8 2222 8 5 0 8 0 4 4 7 1111 99 1111111111 1111 9999 7
consensus : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGCCT-CCCTGTTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
Reference ( family-8679 ) : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGCC--CCCTGTTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
gi|1 : CAGGCCCGTAGCTACT----------------------------CTGT------GGCTGGGTATGAAAAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAATCAGCACACGATGTCTTAATATTTTTTTTTTGCTATGGATGGAAGACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGCAAGCTTACAATCAAAATACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCCATCTGAAAGCATATGGGGTTTGTAATACCAACGTGCCGGCAGTATTGTATCCTCACTGGACATTATGTCATAT-AACCAGGAACTACGGGAAGACAAAAACATCATGCGCATGCTGGCAAATCTGAGGCTGTTACTGACTACTTCCGAATGAATTAATTTTACCCGTTTCTAGATCACATTTTTCAACTCATTAAATTTAATCAAAGGTTTTCTGACTTACGCGATGTTCTGAACAGGTGTTTGTTACTTCCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTTGACAAGAACTGGATC-GTTGGAAAAATCCAGTATCTCTTGATGATATATCAGCAAGTCTTGTA--------AGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAG---AT-AT
gi|12 : CAGGCCCGTAGCTACTCTGATGCAC-------------------TTGTTTTTCGGGCTAGGTATGAA-AAAATTGAGGCACTATATTTAATATCCTTGTTACGTTTTAAAACTAAATACATTATGATACCCATATGGAGTATTGGTCAGACAGCACACGATGTCTTAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatatttacataccgcatcttaccataacataaaaaaataatatatctactaagactttggactaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|13 : taacATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTGTTAAGAAATGTCTATTACAAGTAATTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGA
gi|14 : ATGTCCATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTTTCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-A--------TACTAGTAT---AT-ATA
gi|16 : GAGGAACTACATTTATTAGCCTTGTTAAATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGGTGTCTCAAT----TTaataa
gi|2 : AGACCATTGTCTGTAAACTTACAATCAAAAGACTGTGATTGACTACAGGCCAACACTGAAGCTAGAATTTCGTCAGTACTTTAGAAAAGCTTCAATTCGAAAGCATGTGGGGTTTATTATGCCATAGTGCCGACAGTATTGCATCCTCACTGGACATTATTCCATGTAAACCACGAACTAGGATAAGACAAAAACATAGTAGGCATGCAGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCAATTCTAGATCATATTTTACAACTCAATTAATTGAATCAAAGGTTTACCGAATTACGTGATGTTATGAACAGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACTAGAAA-TTGGA-TTTTTTTCTCCCTTAAGAAATATCTATTACAAGTAACTTCGGTAAGAACTGGATCAATTTGAAAAATGCA-TATCTTTTAATGATAAACCAACAAGTGTTATAGGCGTGTTACAAAAGTGCAGAAGTTTATGAATTACACA-T--------CA----CATCACATCACAT-TACATACAC
gi|3 : GCATATTCTAGTCTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGATTGTGATTGACTACAAGCC--CAC---------------------ACT-----GAAGCTTTGTTCTGAAAGCACGTGGGGTTTATTATACCATCTTGCCAGAAGTATTGCATCCTCACTAGACATGATCCCATGTAAACCACGAACTACGGAAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGCTACTGACTATTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCACTTAATTTAATTAAAGGTTTTCCGAATTACGTGATGTTCTAAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAAATA-TTGGATTTTTTT--TCTCTTAAGAAATGTCTATTACAAGTATCTTCGACAAGAACTGAATC-GTTGGAAAAAAGCAGTTTCTTTTGATAATATACCAACAAGTCTTATAGGCGTGTAAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAA---AT-ATATGTATATACACatatatacatatcaaatcaattcgtaataagtgactatatttacataccacctcttaccttaacataaaaatattatatatccactaagactttggactagaaacttaatcttatgttggtcataagtgcatatatgtattgtcataaatgaataacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : CAGGCCCGTATCTACTCTGAGGCACAGGGAGGCCAGTGCCT-CCCTGTTTTTCGGGCTTGGAATGAGCAAAATTGAGGCACTGTATTTTATATCTTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTGTTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTAATTGACCACAAGCCCACACTGAAGCTAGACATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTTTACCAACGTGTTGACAGTATTGCATCCTCACTCGACATTATCCCATATAAACCACAAACTACGGGAAGACAATAATATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTGATTTTACCTGTTTCTATATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAACACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTA-ACTTACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGACCTGTCTATTACAAGTAATTTCGACAAGAACTGGATT-GTTGGAAAAATGCAATATCTTTTGATGATATTCCATTAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------CA----TAT---AT-ATATGTACACACACcataacataaaaaaataatatatatctactaaaactttggactagaaacgtgatattatgatggtcatacgtgcatctctgtattgtcataaatgaaccacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : CAGGCCTATAGCTACTCTGAGGCACAGGGAGG----TGCCTCCCCTATTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGTAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATCTT-----TGAT-CTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACGCTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTGCGTTCTGAAAGCAGGTGGGGTTTATTATACCAACATGCCGACTGTATTGCATCCTCACTGGACATTATCCAATATAAACCACGAACTACGGGAAGACAATAACATCGTGTGCATGCTGGCAATTCTGA-GCTGTTACTGACTACTTCAAAATAAATTAATTTTACCCGTTTCTAGATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTACTTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGAT
gi|6 : acaGCACTATATTTAATATCCTTGTTATATTTTAAAACTAAATACATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATATCTCAAT----TTATTTTTCTAGGGCTGGAAAAGTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTATACCATTGTCTGTAAGCTTACAATCAAAAGACTATGATTGGCTGCAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTATGTTCTGGAAGCACGTGGGGTTTATTATACCAATGTGCCGACTGTATTGCATCCTCACTGGACATTATCCCATATAAACCATGAACTAAGGGAAGACAAAAATATTGTGTGTATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTAATTTTACCCGTTTTTTGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAATACATGATGTTCTGAATGGGTGTTTGTTACTACCAGGTAGCATAAGTAGACTAACACCAGAAA-TTGGATTTT
gi|7 : TTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-TTATATATATA----TAT---AT-ATATGTATACACAC
gi|8 : tTCCGAATTAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGACTTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACAT-AGTAGGCTCACACTAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATATCTATTACAAGTAATTTCGACAAGAACTGGATC-GTTGGAAAAATGCCGTATCTTTTGATGATATACCAACAAGTCT--------TGTTAGATAAGTGCAG----TT---AAGT--GTAGT--------TA----TGA---AT----CGCACACACACagaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TATATATATGTATATACACAATAGCATAAAAAAATAAAATATATCTAATAAGATTTTGGACTAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Unaligned ( gi|10 ): TTTACCCTACACTCTAAAAAATAATATATATCTACTAAGACTTTGGACTAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): TATATGTATATACACAATATCATAACAAAATAATATATATCTACTAAGACTTTGGACTAGAAATCTTGATCTTATGATGGCAATAAGTGCATCTATGTATTGTCATAAATGAACCACTTGAAAAGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|15 ): TATGTACACGTATTATATTAATTCATAGGAAATGACTATATTTACATATCACCACTTACCATCACATAAAAATAATATATATCTACTAGGACTCTGGACTAGAAA
Unaligned ( gi|17 ): TCAGACGTGTTCATGGACTTTTATCATATATATTTTTTAACAATAAATAANNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): TCAGACGTGTTCATTGACTTTTATCATATATATTTTTTAAAAATTAA
Unaligned ( gi|19 ): TCAGACGTGTTCATAGACTTTTATCATATATATTTTTAAAAAGTAAA
Unaligned ( gi|20 ): TCAGACGTGTTCATAGACTTTTGTCATATATTTTTGTTAAAATAA
Unaligned ( gi|21 ): GACGTGTTCATGGACTTTTATCATATGTATTTTTTAAAAATAAAT
Alignments
lowQualScore : 66666666666666666666 1111 1 1111 2222222222 1111 1111
lowQualScore : 2 2 88888888888888888888 3 1 8 4444 3 2 1 8 0 9 4 0 2222 77 1111111111 2222 1111 5
lowQualScore : . . .................... . . . .... . . . . . . . . .... .. .......... .... .... .
lowQualScore : 5 5 55555555555555555555 2 2 8 2222 8 5 0 8 0 4 4 7 1111 99 1111111111 1111 9999 7
consensus : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGCCTCCC-TGTTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
Reference ( family-8679 ) : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGCCTCCC-TGTTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
gi|1 : CAGGCCCGTAGCTACT---------------------------C-TGT------GGCTGGGTATGAAAAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAATCAGCACACGATGTCTTAATATTTTTTTTTTGCTATGGATGGAAGACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGCAAGCTTACAATCAAAATACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCCATCTGAAAGCATATGGGGTTTGTAATACCAACGTGCCGGCAGTATTGTATCCTCACTGGACATTATGTCATAT-AACCAGGAACTACGGGAAGACAAAAACATCATGCGCATGCTGGCAAATCTGAGGCTGTTACTGACTACTTCCGAATGAATTAATTTTACCCGTTTCTAGATCACATTTTTCAACTCATTAAATTTAATCAAAGGTTTTCTGACTTACGCGATGTTCTGAACAGGTGTTTGTTACTTCCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTTGACAAGAACTGGATC-GTTGGAAAAATCCAGTATCTCTTGATGATATATCAGCAAGTCTTGTA--------AGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAG---AT-AT
gi|12 : CAGGCCCGTAGCTACTCTGATGCAC------------------T-TGTTTTTCGGGCTAGGTATGAA-AAAATTGAGGCACTATATTTAATATCCTTGTTACGTTTTAAAACTAAATACATTATGATACCCATATGGAGTATTGGTCAGACAGCACACGATGTCTTAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatatttacataccgcatcttaccataacataaaaaaataatatatctactaagactttggactaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|13 : taacATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTGTTAAGAAATGTCTATTACAAGTAATTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGA
gi|14 : ATGTCCATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTTTCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-A--------TACTAGTAT---AT-ATA
gi|16 : GAGGAACTACATTTATTAGCCTTGTTAAATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGGTGTCTCAAT----TTaataa
gi|2 : AGACCATTGTCTGTAAACTTACAATCAAAAGACTGTGATTGACTACAGGCCAACACTGAAGCTAGAATTTCGTCAGTACTTTAGAAAAGCTTCAATTCGAAAGCATGTGGGGTTTATTATGCCATAGTGCCGACAGTATTGCATCCTCACTGGACATTATTCCATGTAAACCACGAACTAGGATAAGACAAAAACATAGTAGGCATGCAGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCAATTCTAGATCATATTTTACAACTCAATTAATTGAATCAAAGGTTTACCGAATTACGTGATGTTATGAACAGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACTAGAAA-TTGGA-TTTTTTTCTCCCTTAAGAAATATCTATTACAAGTAACTTCGGTAAGAACTGGATCAATTTGAAAAATGCA-TATCTTTTAATGATAAACCAACAAGTGTTATAGGCGTGTTACAAAAGTGCAGAAGTTTATGAATTACACA-T--------CA----CATCACATCACAT-TACATACAC
gi|3 : GCATATTCTAGTCTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGATTGTGATTGACTACAAGCC--CAC---------------------ACT-----GAAGCTTTGTTCTGAAAGCACGTGGGGTTTATTATACCATCTTGCCAGAAGTATTGCATCCTCACTAGACATGATCCCATGTAAACCACGAACTACGGAAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGCTACTGACTATTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCACTTAATTTAATTAAAGGTTTTCCGAATTACGTGATGTTCTAAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAAATA-TTGGATTTTTTT--TCTCTTAAGAAATGTCTATTACAAGTATCTTCGACAAGAACTGAATC-GTTGGAAAAAAGCAGTTTCTTTTGATAATATACCAACAAGTCTTATAGGCGTGTAAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAA---AT-ATATGTATATACACatatatacatatcaaatcaattcgtaataagtgactatatttacataccacctcttaccttaacataaaaatattatatatccactaagactttggactagaaacttaatcttatgttggtcataagtgcatatatgtattgtcataaatgaataacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : CAGGCCCGTATCTACTCTGAGGCACAGGGAGGCCAGTGCCTCCC-TGTTTTTCGGGCTTGGAATGAGCAAAATTGAGGCACTGTATTTTATATCTTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTGTTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTAATTGACCACAAGCCCACACTGAAGCTAGACATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTTTACCAACGTGTTGACAGTATTGCATCCTCACTCGACATTATCCCATATAAACCACAAACTACGGGAAGACAATAATATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTGATTTTACCTGTTTCTATATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAACACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTA-ACTTACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGACCTGTCTATTACAAGTAATTTCGACAAGAACTGGATT-GTTGGAAAAATGCAATATCTTTTGATGATATTCCATTAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------CA----TAT---AT-ATATGTACACACACcataacataaaaaaataatatatatctactaaaactttggactagaaacgtgatattatgatggtcatacgtgcatctctgtattgtcataaatgaaccacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : CAGGCCTATAGCTACTCTGAGGCACAGGGAGG----TGCCTCCCCTATTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGTAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATCTT-----TGAT-CTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACGCTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTGCGTTCTGAAAGCAGGTGGGGTTTATTATACCAACATGCCGACTGTATTGCATCCTCACTGGACATTATCCAATATAAACCACGAACTACGGGAAGACAATAACATCGTGTGCATGCTGGCAATTCTGA-GCTGTTACTGACTACTTCAAAATAAATTAATTTTACCCGTTTCTAGATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTACTTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGAT
gi|6 : acaGCACTATATTTAATATCCTTGTTATATTTTAAAACTAAATACATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATATCTCAAT----TTATTTTTCTAGGGCTGGAAAAGTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTATACCATTGTCTGTAAGCTTACAATCAAAAGACTATGATTGGCTGCAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTATGTTCTGGAAGCACGTGGGGTTTATTATACCAATGTGCCGACTGTATTGCATCCTCACTGGACATTATCCCATATAAACCATGAACTAAGGGAAGACAAAAATATTGTGTGTATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTAATTTTACCCGTTTTTTGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAATACATGATGTTCTGAATGGGTGTTTGTTACTACCAGGTAGCATAAGTAGACTAACACCAGAAA-TTGGATTTT
gi|7 : TTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-TTATATATATA----TAT---AT-ATATGTATACACAC
gi|8 : tTCCGAATTAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGACTTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACAT-AGTAGGCTCACACTAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATATCTATTACAAGTAATTTCGACAAGAACTGGATC-GTTGGAAAAATGCCGTATCTTTTGATGATATACCAACAAGTCT--------TGTTAGATAAGTGCAG----TT---AAGT--GTAGT--------TA----TGA---AT----CGCACACACACagaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TATATATATGTATATACACAATAGCATAAAAAAATAAAATATATCTAATAAGATTTTGGACTAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Unaligned ( gi|10 ): TTTACCCTACACTCTAAAAAATAATATATATCTACTAAGACTTTGGACTAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): TATATGTATATACACAATATCATAACAAAATAATATATATCTACTAAGACTTTGGACTAGAAATCTTGATCTTATGATGGCAATAAGTGCATCTATGTATTGTCATAAATGAACCACTTGAAAAGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|15 ): TATGTACACGTATTATATTAATTCATAGGAAATGACTATATTTACATATCACCACTTACCATCACATAAAAATAATATATATCTACTAGGACTCTGGACTAGAAA
Unaligned ( gi|17 ): TCAGACGTGTTCATGGACTTTTATCATATATATTTTTTAACAATAAATAANNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): TCAGACGTGTTCATTGACTTTTATCATATATATTTTTTAAAAATTAA
Unaligned ( gi|19 ): TCAGACGTGTTCATAGACTTTTATCATATATATTTTTAAAAAGTAAA
Unaligned ( gi|20 ): TCAGACGTGTTCATAGACTTTTGTCATATATTTTTGTTAAAATAA
Unaligned ( gi|21 ): GACGTGTTCATGGACTTTTATCATATGTATTTTTTAAAAATAAAT
Alignments
lowQualScore : 66666666666666666666 1111 1 1111 2222222222 1111 1111
lowQualScore : 2 2 88888888888888888888 3 1 8 4444 3 2 1 8 0 9 4 0 2222 77 1111111111 2222 1111 5
lowQualScore : . . .................... . . . .... . . . . . . . . .... .. .......... .... .... .
lowQualScore : 5 5 55555555555555555555 2 2 8 2222 8 5 0 8 0 4 4 7 1111 99 1111111111 1111 9999 7
consensus : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGCCTCCC-TGTTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
Reference ( family-8679 ) : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGCCTCCC-TGTTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
gi|1 : CAGGCCCGTAGCTACT---------------------------C-TGT------GGCTGGGTATGAAAAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAATCAGCACACGATGTCTTAATATTTTTTTTTTGCTATGGATGGAAGACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGCAAGCTTACAATCAAAATACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCCATCTGAAAGCATATGGGGTTTGTAATACCAACGTGCCGGCAGTATTGTATCCTCACTGGACATTATGTCATAT-AACCAGGAACTACGGGAAGACAAAAACATCATGCGCATGCTGGCAAATCTGAGGCTGTTACTGACTACTTCCGAATGAATTAATTTTACCCGTTTCTAGATCACATTTTTCAACTCATTAAATTTAATCAAAGGTTTTCTGACTTACGCGATGTTCTGAACAGGTGTTTGTTACTTCCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTTGACAAGAACTGGATC-GTTGGAAAAATCCAGTATCTCTTGATGATATATCAGCAAGTCTTGTA--------AGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAG---AT-AT
gi|12 : CAGGCCCGTAGCTACTCTGATGCAC------------------T-TGTTTTTCGGGCTAGGTATGAA-AAAATTGAGGCACTATATTTAATATCCTTGTTACGTTTTAAAACTAAATACATTATGATACCCATATGGAGTATTGGTCAGACAGCACACGATGTCTTAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatatttacataccgcatcttaccataacataaaaaaataatatatctactaagactttggactaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|13 : taacATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTGTTAAGAAATGTCTATTACAAGTAATTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGA
gi|14 : ATGTCCATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTTTCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-A--------TACTAGTAT---AT-ATA
gi|16 : GAGGAACTACATTTATTAGCCTTGTTAAATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGGTGTCTCAAT----TTaataa
gi|2 : AGACCATTGTCTGTAAACTTACAATCAAAAGACTGTGATTGACTACAGGCCAACACTGAAGCTAGAATTTCGTCAGTACTTTAGAAAAGCTTCAATTCGAAAGCATGTGGGGTTTATTATGCCATAGTGCCGACAGTATTGCATCCTCACTGGACATTATTCCATGTAAACCACGAACTAGGATAAGACAAAAACATAGTAGGCATGCAGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCAATTCTAGATCATATTTTACAACTCAATTAATTGAATCAAAGGTTTACCGAATTACGTGATGTTATGAACAGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACTAGAAA-TTGGA-TTTTTTTCTCCCTTAAGAAATATCTATTACAAGTAACTTCGGTAAGAACTGGATCAATTTGAAAAATGCA-TATCTTTTAATGATAAACCAACAAGTGTTATAGGCGTGTTACAAAAGTGCAGAAGTTTATGAATTACACA-T--------CA----CATCACATCACAT-TACATACAC
gi|3 : GCATATTCTAGTCTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGATTGTGATTGACTACAAGCC--CAC---------------------ACT-----GAAGCTTTGTTCTGAAAGCACGTGGGGTTTATTATACCATCTTGCCAGAAGTATTGCATCCTCACTAGACATGATCCCATGTAAACCACGAACTACGGAAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGCTACTGACTATTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCACTTAATTTAATTAAAGGTTTTCCGAATTACGTGATGTTCTAAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAAATA-TTGGATTTTTTT--TCTCTTAAGAAATGTCTATTACAAGTATCTTCGACAAGAACTGAATC-GTTGGAAAAAAGCAGTTTCTTTTGATAATATACCAACAAGTCTTATAGGCGTGTAAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAA---AT-ATATGTATATACACatatatacatatcaaatcaattcgtaataagtgactatatttacataccacctcttaccttaacataaaaatattatatatccactaagactttggactagaaacttaatcttatgttggtcataagtgcatatatgtattgtcataaatgaataacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : CAGGCCCGTATCTACTCTGAGGCACAGGGAGGCCAGTGCCTCCC-TGTTTTTCGGGCTTGGAATGAGCAAAATTGAGGCACTGTATTTTATATCTTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTGTTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTAATTGACCACAAGCCCACACTGAAGCTAGACATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTTTACCAACGTGTTGACAGTATTGCATCCTCACTCGACATTATCCCATATAAACCACAAACTACGGGAAGACAATAATATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTGATTTTACCTGTTTCTATATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAACACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTA-ACTTACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGACCTGTCTATTACAAGTAATTTCGACAAGAACTGGATT-GTTGGAAAAATGCAATATCTTTTGATGATATTCCATTAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------CA----TAT---AT-ATATGTACACACACcataacataaaaaaataatatatatctactaaaactttggactagaaacgtgatattatgatggtcatacgtgcatctctgtattgtcataaatgaaccacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : CAGGCCTATAGCTACTCTGAGGCACAGGGAGG----TGCCTCCCCTATTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGTAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATCTT-----TGAT-CTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACGCTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTGCGTTCTGAAAGCAGGTGGGGTTTATTATACCAACATGCCGACTGTATTGCATCCTCACTGGACATTATCCAATATAAACCACGAACTACGGGAAGACAATAACATCGTGTGCATGCTGGCAATTCTGA-GCTGTTACTGACTACTTCAAAATAAATTAATTTTACCCGTTTCTAGATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTACTTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGAT
gi|6 : acaGCACTATATTTAATATCCTTGTTATATTTTAAAACTAAATACATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATATCTCAAT----TTATTTTTCTAGGGCTGGAAAAGTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTATACCATTGTCTGTAAGCTTACAATCAAAAGACTATGATTGGCTGCAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTATGTTCTGGAAGCACGTGGGGTTTATTATACCAATGTGCCGACTGTATTGCATCCTCACTGGACATTATCCCATATAAACCATGAACTAAGGGAAGACAAAAATATTGTGTGTATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTAATTTTACCCGTTTTTTGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAATACATGATGTTCTGAATGGGTGTTTGTTACTACCAGGTAGCATAAGTAGACTAACACCAGAAA-TTGGATTTT
gi|7 : TTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-TTATATATATA----TAT---AT-ATATGTATACACAC
gi|8 : tTCCGAATTAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGACTTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACAT-AGTAGGCTCACACTAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATATCTATTACAAGTAATTTCGACAAGAACTGGATC-GTTGGAAAAATGCCGTATCTTTTGATGATATACCAACAAGTCT--------TGTTAGATAAGTGCAG----TT---AAGT--GTAGT--------TA----TGA---AT----CGCACACACACagaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
blockSeqs : C T AGGGAGGCCAGTGCCTCCC T A C . A A A G T T A AAGT AC TTATATATA CTAG TCAC C
blockSeqs : C G AGGGAGGTGCCTCCCC T T C . G C T G T T . . . GT . T .
blockSeqs : C G T T A . . A C T G . T . . . A . A .
blockSeqs : . . C A G . T . . . T . T .
blockSeqs : . . A . . T . . . T . T .
blockSeqs : A . . . . . . T . A .
blockSeqs : T . . . .
blockSeqs : .
blockSeqCons : ****
originalCons : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGCCTCCC-TGTTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
finalCons : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGCCTCCC-TGTTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TATATATATGTATATACACAATAGCATAAAAAAATAAAATATATCTAATAAGATTTTGGACTAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Unaligned ( gi|10 ): TTTACCCTACACTCTAAAAAATAATATATATCTACTAAGACTTTGGACTAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): TATATGTATATACACAATATCATAACAAAATAATATATATCTACTAAGACTTTGGACTAGAAATCTTGATCTTATGATGGCAATAAGTGCATCTATGTATTGTCATAAATGAACCACTTGAAAAGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|15 ): TATGTACACGTATTATATTAATTCATAGGAAATGACTATATTTACATATCACCACTTACCATCACATAAAAATAATATATATCTACTAGGACTCTGGACTAGAAA
Unaligned ( gi|17 ): TCAGACGTGTTCATGGACTTTTATCATATATATTTTTTAACAATAAATAANNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): TCAGACGTGTTCATTGACTTTTATCATATATATTTTTTAAAAATTAA
Unaligned ( gi|19 ): TCAGACGTGTTCATAGACTTTTATCATATATATTTTTAAAAAGTAAA
Unaligned ( gi|20 ): TCAGACGTGTTCATAGACTTTTGTCATATATTTTTGTTAAAATAA
Unaligned ( gi|21 ): GACGTGTTCATGGACTTTTATCATATGTATTTTTTAAAAATAAAT
Alignments
lowQualScore : 66666666666666666666 1111 1 1111 2222222222 1111 1111
lowQualScore : 2 2 88888888888888888888 3 1 8 4444 3 2 1 8 0 9 4 0 2222 77 1111111111 2222 1111 5
lowQualScore : . . .................... . . . .... . . . . . . . . .... .. .......... .... .... .
lowQualScore : 5 5 55555555555555555555 2 2 8 2222 8 5 0 8 0 4 4 7 1111 99 1111111111 1111 9999 7
consensus : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGCCTCCC-TGTTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
Reference ( family-8679 ) : CAGGCCCGTAGCTACTCTGAGGCACAGGGAGG----TGCCTCCC-TGTTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGTCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTATACCAACGTGCCGACAGTATTGCATCCTCACTGGACATTATCCCATATAAACCACGAACTACGGGAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAANTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAT---AT-ATATGTACACACAC
gi|1 : CAGGCCCGTAGCTACT---------------------------C-TGT------GGCTGGGTATGAAAAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAATCAGCACACGATGTCTTAATATTTTTTTTTTGCTATGGATGGAAGACTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGCAAGCTTACAATCAAAATACTGTGATTGACTACAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTTCCATCTGAAAGCATATGGGGTTTGTAATACCAACGTGCCGGCAGTATTGTATCCTCACTGGACATTATGTCATAT-AACCAGGAACTACGGGAAGACAAAAACATCATGCGCATGCTGGCAAATCTGAGGCTGTTACTGACTACTTCCGAATGAATTAATTTTACCCGTTTCTAGATCACATTTTTCAACTCATTAAATTTAATCAAAGGTTTTCTGACTTACGCGATGTTCTGAACAGGTGTTTGTTACTTCCAGGTAACATAAGTAGGCTAACACCAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTAACTTTGACAAGAACTGGATC-GTTGGAAAAATCCAGTATCTCTTGATGATATATCAGCAAGTCTTGTA--------AGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAG---AT-AT
gi|12 : CAGGCCCGTAGCTACTCTGATGCAC------------------T-TGTTTTTCGGGCTAGGTATGAA-AAAATTGAGGCACTATATTTAATATCCTTGTTACGTTTTAAAACTAAATACATTATGATACCCATATGGAGTATTGGTCAGACAGCACACGATGTCTTAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTATTATTGCTGCTGTTTTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatatttacataccgcatcttaccataacataaaaaaataatatatctactaagactttggactaaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|13 : taacATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTGTTAAGAAATGTCTATTACAAGTAATTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGA
gi|14 : ATGTCCATTACAAGTAACTTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTTTCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-A--------TACTAGTAT---AT-ATA
gi|16 : GAGGAACTACATTTATTAGCCTTGTTAAATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGGTGTCTCAAT----TTaataa
gi|2 : AGACCATTGTCTGTAAACTTACAATCAAAAGACTGTGATTGACTACAGGCCAACACTGAAGCTAGAATTTCGTCAGTACTTTAGAAAAGCTTCAATTCGAAAGCATGTGGGGTTTATTATGCCATAGTGCCGACAGTATTGCATCCTCACTGGACATTATTCCATGTAAACCACGAACTAGGATAAGACAAAAACATAGTAGGCATGCAGGCAATTCTGAGGCTGTTACTGACTACTTCCGAATAAATTAATTTTACCCAATTCTAGATCATATTTTACAACTCAATTAATTGAATCAAAGGTTTACCGAATTACGTGATGTTATGAACAGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACTAGAAA-TTGGA-TTTTTTTCTCCCTTAAGAAATATCTATTACAAGTAACTTCGGTAAGAACTGGATCAATTTGAAAAATGCA-TATCTTTTAATGATAAACCAACAAGTGTTATAGGCGTGTTACAAAAGTGCAGAAGTTTATGAATTACACA-T--------CA----CATCACATCACAT-TACATACAC
gi|3 : GCATATTCTAGTCTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGATTGTGATTGACTACAAGCC--CAC---------------------ACT-----GAAGCTTTGTTCTGAAAGCACGTGGGGTTTATTATACCATCTTGCCAGAAGTATTGCATCCTCACTAGACATGATCCCATGTAAACCACGAACTACGGAAAGACAAAAACATCGTGCGCATGCTGGCAATTCTGAGGCTGCTACTGACTATTTCCGAATAAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCACTTAATTTAATTAAAGGTTTTCCGAATTACGTGATGTTCTAAACGGGTGTTTGTTACTACCAGGTAACATAAGTAGGCTAACACCAAATA-TTGGATTTTTTT--TCTCTTAAGAAATGTCTATTACAAGTATCTTCGACAAGAACTGAATC-GTTGGAAAAAAGCAGTTTCTTTTGATAATATACCAACAAGTCTTATAGGCGTGTAAGATAAGTGCAG----TTATGAATT--ATA-T--------TA----TAA---AT-ATATGTATATACACatatatacatatcaaatcaattcgtaataagtgactatatttacataccacctcttaccttaacataaaaatattatatatccactaagactttggactagaaacttaatcttatgttggtcataagtgcatatatgtattgtcataaatgaataacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|4 : CAGGCCCGTATCTACTCTGAGGCACAGGGAGGCCAGTGCCTCCC-TGTTTTTCGGGCTTGGAATGAGCAAAATTGAGGCACTGTATTTTATATCTTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATTTTGTTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTAATTGACCACAAGCCCACACTGAAGCTAGACATTAGTCAGTACTTTAGAAAAGCTTCGTTCTGAAAGCACGTGGGGTTTATTTTACCAACGTGTTGACAGTATTGCATCCTCACTCGACATTATCCCATATAAACCACAAACTACGGGAAGACAATAATATCGTGCGCATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTGATTTTACCTGTTTCTATATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAACACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACATAAGTA-ACTTACACCAGAAA-TTGGATTTTTTTTCTCTCTTAAGACCTGTCTATTACAAGTAATTTCGACAAGAACTGGATT-GTTGGAAAAATGCAATATCTTTTGATGATATTCCATTAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-T--------CA----TAT---AT-ATATGTACACACACcataacataaaaaaataatatatatctactaaaactttggactagaaacgtgatattatgatggtcatacgtgcatctctgtattgtcataaatgaaccacttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
gi|5 : CAGGCCTATAGCTACTCTGAGGCACAGGGAGG----TGCCTCCCCTATTTTTCGGGCTAGGTATGAGCAAAATTGAGGCACTATATTTAATATCCTTGTTACATTTTAAAACTAAATAAATTATGATACTCAGATGTAGTATTGGTCAGGCAGCACACGATGCCTCAAT----TTATTTTGCTAGGGATGGAAAACTTTGATCTT-----TGAT-CTGTTTTGACCCAGCATATTCTAGACTACACTAGACCATTGTCTGTAAGCTTACAATCAAAAGACTGTGATTGACTACAAGCCCACGCTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTGCGTTCTGAAAGCAGGTGGGGTTTATTATACCAACATGCCGACTGTATTGCATCCTCACTGGACATTATCCAATATAAACCACGAACTACGGGAAGACAATAACATCGTGTGCATGCTGGCAATTCTGA-GCTGTTACTGACTACTTCAAAATAAATTAATTTTACCCGTTTCTAGATAATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAAAACATGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAAAATAAGTA-ACTAACACCAGAAATTTGGATTTTTTTTCTCTCTTAAGAAATGTCTATTACAAGTACTTTCGATAAGATCTGGATC-GTTGGAAAAATGCAGTATCTTTTGAT
gi|6 : acaGCACTATATTTAATATCCTTGTTATATTTTAAAACTAAATACATTATGATACTCAGATGAAGTATTGGTCAGGCAGCACACGATATCTCAAT----TTATTTTTCTAGGGCTGGAAAAGTTTGATTTTATTATTGCTGCTGTTTTGACCCAGCATATTCTAGACTACACTATACCATTGTCTGTAAGCTTACAATCAAAAGACTATGATTGGCTGCAAGCCCACACTGAAGCTAGAAATTAGTCAGTACTTTAGAAAAGCTATGTTCTGGAAGCACGTGGGGTTTATTATACCAATGTGCCGACTGTATTGCATCCTCACTGGACATTATCCCATATAAACCATGAACTAAGGGAAGACAAAAATATTGTGTGTATGCTGGCAATTCTGAGGCTGTTACTGACTACTTCCAAATAAATTAATTTTACCCGTTTTTTGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGAAATACATGATGTTCTGAATGGGTGTTTGTTACTACCAGGTAGCATAAGTAGACTAACACCAGAAA-TTGGATTTT
gi|7 : TTCGACAAGAACTGGATC-GTTGGAAAAATGCAGTATCTTTTGATGATATACCAACAAGTCTTATAGGCGTGTTAGATAAGTGCAG----TTATGAATT--ATA-TTATATATATA----TAT---AT-ATATGTATACACAC
gi|8 : tTCCGAATTAATTAATTTTACCCGTTTCTAGATCATATTTTACAACTCATTTAATTTAATCAAAGGTTTTCCGACTTACGTGATGTTCTGAACGGGTGTTTGTTACTACCAGGTAACAT-AGTAGGCTCACACTAGAAA-TTGGA-CTTTTTTCTCTCTTAAGAAATATCTATTACAAGTAATTTCGACAAGAACTGGATC-GTTGGAAAAATGCCGTATCTTTTGATGATATACCAACAAGTCT--------TGTTAGATAAGTGCAG----TT---AAGT--GTAGT--------TA----TGA---AT----CGCACACACACagaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TATATATATGTATATACACAATAGCATAAAAAAATAAAATATATCTAATAAGATTTTGGACTAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
Unaligned ( gi|10 ): TTTACCCTACACTCTAAAAAATAATATATATCTACTAAGACTTTGGACTAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|11 ): TATATGTATATACACAATATCATAACAAAATAATATATATCTACTAAGACTTTGGACTAGAAATCTTGATCTTATGATGGCAATAAGTGCATCTATGTATTGTCATAAATGAACCACTTGAAAAGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|15 ): TATGTACACGTATTATATTAATTCATAGGAAATGACTATATTTACATATCACCACTTACCATCACATAAAAATAATATATATCTACTAGGACTCTGGACTAGAAA
Unaligned ( gi|17 ): TCAGACGTGTTCATGGACTTTTATCATATATATTTTTTAACAATAAATAANNNNNNNNNNNNNNNNNN
Unaligned ( gi|18 ): TCAGACGTGTTCATTGACTTTTATCATATATATTTTTTAAAAATTAA
Unaligned ( gi|19 ): TCAGACGTGTTCATAGACTTTTATCATATATATTTTTAAAAAGTAAA
Unaligned ( gi|20 ): TCAGACGTGTTCATAGACTTTTGTCATATATTTTTGTTAAAATAA
Unaligned ( gi|21 ): GACGTGTTCATGGACTTTTATCATATGTATTTTTTAAAAATAAAT