lowQualScore : 1 444444444444 222222222 1111 222 1111111111111111 444444444444444444 33333333333 111111 222222
lowQualScore : 0 1 999999999999 8 666666666 3333 4 4 88 555 3 7777 99999 7 2 4 6666666666666666 5 0 3 000000000000000000 777 4 66 1 99 11111111111 4 333333 66 7 999999
lowQualScore : . . ............ . ......... .... . . .. ... . .... ..... . . . ................ . . . .................. ... . .. . .. ........... . ...... .. . ......
lowQualScore : 8 4 888888888888 0 333333333 0000 4 4 66 666 3 7777 66666 1 3 0 8888888888888888 5 7 9 777777777777777777 222 3 11 8 00 00000000000 4 111111 99 1 555555
consensus : AGCTTCTNAGTCAAATNTT----AATCTAA-GTC-AAA-TTT-ACCTAAT-TTTT-CACAT-CAA-TTTCN-ATGGTGTCATT----ACATTTTC----TATTAAA-AAA-------T-A--CGTGGATGNTCAACATAT----------TTA----GATC-TCGTCT--TACTATTCAAT-NAAAAT-ATAAGTTTAATAA-TCCATAANA----ATGG--TTTTAAAATGAGATA-G----AAATTATAAGA
Reference ( gi|2 ) : AGCTTCTTAGTCAAAAATT----ACTCTAA-GTC-CAA-TAT-ACCTTAT-TTTT-CACAT-CAG-TTTCT-TTGGTGTTATT----ACATTTTC----TACTAAA-AAA-------T-A--TGTGAATGGTCAATATAT----------ATA----TATT-TCATTT--TACTATTCAAT-TAAAAG-GTAAGCTAGATAA-TCCATAAGA----ATGG--TTTTAAAATGAGATA-G----AAATTATAAAA
gi|1 : AGCTTCTAAGGCAAATCTT----AATTTAA-GTC-AAAGTTC-ACCTAAT-TTTT-CACAT-CAA-TTTT-----ATGTT--T-------TTTTC----TATTAAA-AAG-------T-A--TGTGAAAGTTCAATAGATTCATTTTTCAATACTGGTATC-TCATTT--TATCATTC-AT-TGAATA-GTAAGCTGAATAA-TCTAT
gi|12 : acaataatgcagatatttggacctgtatgcacaaAGCTTCTTAGTTAAGTCTT----AACTTAA-ACC-AAG-TTTGACCTAAT-TTTTTCACAT-CAA-TT-CT-ATGGTTTCATT----ACATTTTC----TACTAAA-ACA-------TGA--TATGACTGCTTGATAT
gi|15 : attcataaAGCTTCTGAGTGAGA----------TCTAAAGTTACAA-TTT-ACTTGAT-TGTT-CATAT-CAG-TTTCT-ATGGTGTCCTC----ACATTTg
gi|13 : AACTTCT--GTCAAATGTT----A-TCTAA-GTC-AAAATTT-ACTTAAG-TTTT-CACCT-CAA-CTTTG-ATGGTGTCATT----ATTTTTTT----AATTAAA-
gi|5 : tacaacaatccagatgtgtgcagtacacataaCTTAGTTAACTATTTACAACT-TAA-TTC-AAA-TATTACCTC---TGTT-CACGT-CAA-TTCAT-ATGGTGCCATTGATGATATATTT----TATTGAA-ACA-------TCG--CATGGACGTTGAACAGGT-----------T-----TAGT-TCGTTT--TACTGTTCAAT-GAAGAT-ATTAGTTA-ATAAATCCATAAAC----ACGT--TTTTGAAAg
gi|7 : A-TTT-ACCTTATATTTT-CACATACA--TTCCTACTGAT-TCATT----CTATTATCCAAGTACTAAA-TAT-------T-A--AGCGGATAG-----ATGC----------ATG----TA----CATCT--TATTATT--ATATAAAAT-ATAAGCTTAATAA-TTCATTATA----ACGG--TTTTAAAATGA
gi|4 : CTAAT-TTTT-CTTAT-TAA-TTTCA-ATTGTGTCATT----ACATTTGC----TAAT-AA-AAT-------T-A--CATGAATGATCAACACAT----------TAA----GATC-CCGTAT--TATTAGTCAAT-TAAAAATATATGTTTAATGA-TCCATAA-A----ATAG--TTTT-AAATGAGATA-G----AA
gi|8 : atggctgtactcattcaacatttttttctTTT-CACAT-TAA-CTTCT-ACTGTGTCATT----ATAGCTTC----TATTATA-AAG-------T-AAACACGAATGATCAACATAT----------TAA----GATT-TCATTC--TACTATTTAAT-GCAAAT-ATAAATTTAATAA-GCCATAATA----ATTG--TTTGAGAATGAGATA-c
gi|6 : TT-GACAT-CAGATTTCG-ATGGCGTTTTT----ACATTTTC----TATT-TT-AAA-------T-A--CATAAATGATCAACGTAT----------TTA----GATC-TCAT------CCATTCAAT-GGAAAT-ATAAGTTTACTAA-TCCATAAAATAATATAGAACTTTAAA---AGATA-ATCTTAAATTATAAA
gi|3 : aaataAG-TTTCA-ATGGTTTCAAT----ACATTTTC-----A-TAAATAGA-------T-A--CGTGGATGATAAACATAT----------TCA----TATTCTCGTTT--TACTGTTCAAT-AAATAT-ACAAGCTTAACGG-TTCATAAGA----ATGG--TTTTAATGTGAGATAGG----AAATTAT
gi|14 : cggctgtattcctaaagattttttatctaaagtgttacccaattcataactgaTCATT----ACATATTT----AATTAAA-ACATTTGCTTT-A--TATGGATGGTTAACATTT----------TTA----GACC-CCATCTCGTACCATTCAAT-GACAAT-ATTAGTTA-AT-A-TCCACAAAA----ATGA--TTTTAGA
gi|9 : tGGATGATCAACATAC----------ATA----GATC-TCAACT--TGCTATTCC-T-TAAAA-----------ATAA-TCTATAAGA----ATGG--CTTTAAA--GA----------AAATTATAAGA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ATCTCATCTAGTTATTCCATAAAAATAAAAACTTAATAATCCATTATAATGGTTTGACGGAGAATAACAAGAAAATCATAAATTCTGACTTAGGTTTTCAACTTGGGATGCTTTATGAATATGGGTC
Unaligned ( gi|11 ): TGGGCCTGTATTCATACAGCTTCCGAGTTAACTTTTAACTTATATTAAATTTTACCTAATATTTCATATCAATTTTTATGTCATAACATTATCTGTTAAAATAATACACGATTATTCGGCAGA
Unaligned ( gi|16 ): TACAAGATAAAGTTATTGGTAGACCTGAGAGCATATTC
Alignments
lowQualScore : 1111111 1111111 222222222222222 111111
lowQualScore : 6 0 1 0000000 3 5 8 8 8 2 4 4 3 3 1 3 6666 7777 555 9999999 55 0 1 555555555555555 3 1 55 3 44 3 4 2 3 4 8888 55 8888 3 0 999999
lowQualScore : . . . ....... . . . . . . . . . . . . .... .... ... ....... .. . . ............... . . .. . .. . . . . . .... .. .... . . ......
lowQualScore : 6 4 0 0000000 4 0 0 0 0 6 0 0 3 3 0 3 5555 1111 555 1111111 00 2 0 555555555555555 6 6 00 6 66 6 5 2 6 9 5555 55 5555 6 7 444444
consensus : AGCTTCTNAGTCAAATNTT---AACCTAAGTCA-AA-T-TT-ACCTAA-T-TTTTCACATCA-A-TTTCTA-TGGTGTCATT----ACATTTTC----TATTAAAA-AAT-------A--CGTGAATGNTCAACATATTTA------------G--AT-CTCATCT--TACTATTCAA-TG-AAAATA-TAAGCTTAATAA-TCCATAANA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAGA
Reference ( family-83 ) : AGCTTCTNAGTCAAATNTT---AATCTAAGTCA-AA-T-TT-ACCTAA-T-TTTTCACATCA-A-TTTCNA-TGGTGTCATT----ACATTTTC----TATTAAAA-AAT-------A--CGTGGATGNTCAACATATTTA------------G--AT-CTCGTCT--TACTATTCAA-TN-AAAATA-TAAGTTTAATAA-TCCATAANA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAGA
gi|1 : AGCTTCTAAGGCAAATCTT---AATTTAAGTCA-AAGT-TC-ACCTAA-T-TTTTCACATCA-A-TTTTA-----TGT--TT-------TTTTC----TATTAAAA-AGT-------A--TGTGAAAGTTCAATAGATTCATTTTTCAATACTGGTAT-CTCATTT--TATCATTCAT-TG---AATAGTAAGCTGAATAA-TCTAT
gi|10 : acaataatgcagatatttggacctgtatgcacaa--AT-CTCATCT--AGTTATTCCA-TA-AAAATA-AAAACTTAATAA-TCCATTATA----ATGG--TTTGACGGAGAATAACAAG-A----AAATCATAA
gi|11 : AGCTTCCGAGTTAACTTTT---AACTTATATTA-AA-T-TTTACCTAA-T-ATTTCATATCA-A-TTTTTA----TGTCATA----ACATTATC----TGTTAAAATAAT-------A--CACGATTATTCGGCAattctgacttaggttttcaacttgggatgctttatgaatatgggtc
gi|12 : tgggcctgtattcatacAGCTTCTTAGTTAAGTCTT---AACTTAAACCA-AG-T-TTGACCTAATT-TTTTCACATCA-A--TTCTA-TGGTTTCATT----ACATTTTC----TACTAAAA-CATG------A--TATGACTGCTTGATATga
gi|13 : attcataaAACTTCT--GTCAAATGTT---A-TCTAAGTCA-AAAT-TT-ACTTAA-G-TTTTCACCTCA-A-CTTTGA-TGGTGTCATT----ATTTTTTT----AATTAAAg
gi|14 : tacaacaatccagatgtgtgcagtacacataaTCATT----ACATATTT----AATTAAAA-CATTTGCTTTA--TATGGATGGTTAACATTTTTA------------G--AC-CCCATCTCGTACCATTCAA-TG-ACAATA-TTAG-TTAAT-A-TCCACAAAA----ATGA--TTT----TAGAg
gi|15 : tAGCTTCTGAGTGAGATCT-----A---AAGTTACAA-T-TT-ACTTGA-T-TGTTCATATCA-G-TTTCTA-TGGTGTCCTC----ACATTT
gi|2 : AGCTTCTTAGTCAAAAATT---ACTCTAAGTCC-AA-T-AT-ACCTTA-T-TTTTCACATCA-G-TTTCTT-TGGTGTTATT----ACATTTTC----TACTAAAA-AAT-------A--TGTGAATGGTCAATATATATA------------T--AT-TTCATTT--TACTATTCAA-TT-AAAAGG-TAAGCTAGATAA-TCCATAAGA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAAA
gi|3 : TTTT---TATCTAA-----AG-TGTT-ACCCAA-T-TCATAAC-TGA-AGTTTCAA-TGGTTTCAAT----ACATTTTC-----ATAAATA-GAT-------A--CGTGGATGATAAACATATTCA------------T--ATTCTCGTTT--TACTGTTCAA-TA-AATATA-CAAGCTTAACGG-TTCATAAGA----ATGG--TTT----TAATGTGAGATAGG----AAATTAT
gi|4 : cggctgtattcctaaagat-T-TT-CTCTAA-T-TTTTCTTATTA-A-TTTCAA-TTGTGTCATT----ACATTTGC----TAAT-AAA-ATT-------A--CATGAATGATCAACACATTAA------------G--AT-CCCGTAT--TATTAGTCAATTA-AAAATA-TATGTTTAATGA-TCCATAA-A----ATAG--TTT----T-AAATGAGATA-G----AA
gi|5 : atggctgtactcattcaacattttCTTAGTTAACTATTTACAACTTAATTCA-AA-TATT-ACCT---C-TGTTCACGTCA-A-TTCATA-TGGTGCCATTGATGATATATTT----TATTGAAA-CATC------G--CATGGACGTTGAACAGGTTTA------------G-----TTCGTTT--TACTGTTCAA-TG-AAGATA-TTAGTT-AATAAATCCATAAAC----ACGT--TTT----TGAAAc
gi|6 : TTGACATCAGA-TTTCGA-TGGCGTTTTT----ACATTTTC----TATTTTAA-A-T-------A--CATAAATGATCAACGTATTTA------------G--AT-CTCATCC------ATTCAA-TG-GAAATA-TAAGTTTACTAA-TCCATAAAATAATATAGAACTT----TAAA---AGATA-ATCTTAAATTATAA
gi|7 : aaataA-T-TT-ACCTTA-TATTTTCACATAC-A-TTCCTACTGAT-TCATT----CTATTATCCAAGTACTAAAT-ATT-------A--AGCGGATAG---ATGCATGTA--------------------CATCT--TATTATT--A-TATAAAATA-TAAGCTTAATAA-TTCATTATA----ACGG--TTT----TAAAATGAa
gi|8 : TTTCACATTA-A-CTTCTA-CTGTGTCATT----ATAGCTTC----TATTATAA-AGT-------AAACACGAATGATCAACATATTAA------------G--AT-TTCATTC--TACTATTTAA-TG-CAAATA-TAAATTTAATAA-GCCATAATA----ATTG--TTT----GAGAATGAGATA-
gi|9 : GGATGATCAACATACATA------------G--AT-CTCAACT--TGCTATTC-C-TT-AAA-----------AATAA-TCTATAAGA----ATGG--CTT----TAAA--GA----------AAATTATAAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TACAAGATAAAGTTATTGGTAGACCTGAGAGCATATTC
Alignments
lowQualScore : 1111111 1111111 222222222222222 111111
lowQualScore : 6 0 1 2222222 5 8 4 8 2 4 4 3 3 3 0 2 6666 7777 555 9999999 55 0 1 555555555555555 3 4 55 3 2 3 5 3 4 8888 55 8888 3 0 999999
lowQualScore : . . . ....... . . . . . . . . . . . . .... .... ... ....... .. . . ............... . . .. . . . . . . .... .. .... . . ......
lowQualScore : 6 4 0 6666666 7 9 0 0 6 0 0 3 3 3 4 5 5555 1111 555 1111111 00 2 0 555555555555555 6 1 00 6 6 6 7 6 9 5555 55 5555 6 7 444444
consensus : AGCTTCTNAGTCAAATNTT---AACTTAAGTCA-AA-T-TT-ACCTAA-T-TTTTCACATCA-A-TTTCTA-TGGTGTCATT----ACATTTTC----TATTAAAA-AAT-------A--CGTGAATGNTCAACATATTTA------------G--AT-CTCATCT--TACTATTCAA-TGAAAATA-TAAGCTTAAT-AATCCATAANA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAGA
Reference ( family-83 ) : AGCTTCTNAGTCAAATNTT---AACCTAAGTCA-AA-T-TT-ACCTAA-T-TTTTCACATCA-A-TTTCTA-TGGTGTCATT----ACATTTTC----TATTAAAA-AAT-------A--CGTGAATGNTCAACATATTTA------------G--AT-CTCATCT--TACTATTCAA-TGAAAATA-TAAGCTTAAT-AATCCATAANA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAGA
gi|1 : AGCTTCTAAGGCAAATCTT---AATTTAAGTCA-AAGT-TC-ACCTAA-T-TTTTCACATCA-A-TTT-TA-T-GT----TT-------TTTTC----TATTAAAA-AGT-------A--TGTGAAAGTTCAATAGATTCATTTTTCAATACTGGTAT-CTCATTT--TATCATTCAT-TG--AATAGTAAGCTGAAT-AATCTAT
gi|10 : acaataatgcagatatttggacctgtatgcacaa--AT-CTCATCT--AGTTATTCCA-TAAAAATA-AAAACTTAAT-AATCCATTATA----ATGG--TTTGACGGAGAATAACAAG-A----AAATCATAA
gi|11 : AGCTTCCGAGTTAACTTTT---AACTTATATTA-AA-T-TTTACCTAA-T-ATTTCATATCA-A-TTTTTA----TGTCATA----ACATTATC----TGTTAAAATAAT-------A--CACGATTATTCGGCAattctgacttaggttttcaacttgggatgctttatgaatatgggtc
gi|12 : tgggcctgtattcatacAGCTTCTTAGTTAAGTCTT---AACTTAAACCA-AG-T-TTGACCTAATT-TTTTCACATCA-A--TTCTA-TGGTTTCATT----ACATTTTC----TACTAAAA-CATG------A--TATGACTGCTTGATATga
gi|13 : attcataaAACTTCT--GTCAAATGTT---A-TCTAAGTCA-AAAT-TT-ACTTAA-G-TTTTCACCTCA-A-CTTTGA-TGGTGTCATT----ATTTTTTT----AATTAAAg
gi|14 : tacaacaatccagatgtgtgcagtacacataaTCATT----ACATATTT----AATTAAAA-CATTTGCTTTA--TATGGATGGTTAACATTTTTA------------G--AC-CCCATCTCGTACCATTCAA-TGACAATA-TTAG-TTAAT--ATCCACAAAA----ATGA--TTT----TAGAg
gi|15 : tAGCTTCTGAGTGAGATCT-----A---AAGTTACAA-T-TT-ACTTGA-T-TGTTCATATCA-G-TTTCTA-TGGTGTCCTC----ACATTT
gi|2 : AGCTTCTTAGTCAAAAATT---ACTCTAAGTCC-AA-T-AT-ACCTTA-T-TTTTCACATCA-G-TTTCTT-TGGTGTTATT----ACATTTTC----TACTAAAA-AAT-------A--TGTGAATGGTCAATATATATA------------T--AT-TTCATTT--TACTATTCAA-TTAAAAGG-TAAGCTAGAT-AATCCATAAGA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAAA
gi|3 : -TT-ACCCAA-T-TCATAAC-TGA-AGTTTCAA-TGGTTTCAAT----ACATTTTC-----ATAAATA-GAT-------A--CGTGGATGATAAACATATTCA------------T--ATTCTCGTTT--TACTGTTCAA-TAAATATA-CAAGCTTAAC-GGTTCATAAGA----ATGG--TTT----TAATGTGAGATAGG----AAATTAT
gi|4 : cggctgtattcctaaagattttttatctaaagtg-T-TT-CTCTAA-T-TTTTCTTATTA-A-TTTCAA-TTGTGTCATT----ACATTTGC----TAAT-AAA-ATT-------A--CATGAATGATCAACACATTAA------------G--AT-CCCGTAT--TATTAGTCAATTAAAAATA-TATGTTTAAT-GATCCATAA-A----ATAG--TTT----T-AAATGAGATA-G----AA
gi|5 : atggctgtactcattcaacattttCTTAGTTAACTATTTACAACTTAATTCA-AA-TATT-ACCT---C-TGTTCACGTCA-A-TTCATA-TGGTGCCATTGATGATATATTT----TATTGAAA-CATC------G--CATGGACGTTGAACAGGTTTA------------G-----TTCGTTT--TACTGTTCAA-TGAAGATA-TTAG-TTAATAAATCCATAAAC----ACGT--TTT----TGAAAc
gi|6 : TTGACATCAGA-TTTCGA-TGGCGTTTTT----ACATTTTC----TATTTTAA-A-T-------A--CATAAATGATCAACGTATTTA------------G--AT-CTCAT------CCATTCAA-TGGAAATA-TAAGTTTACT-AATCCATAAAATAATATAGAACTT----TAAA---AGATA-ATCTTAAATTATAA
gi|7 : aaataA-T-TT-ACCTTA-TATTTTCACATAC-A-TTCCTACTGAT-TCATT----CTATTATCCAAGTACTAAAT-ATT-------A--AGCGGATAG---ATGCATGTA--------------------CATCT--TATTATTATA-T-AAAATA-TAAGCTTAAT-AATTCATTATA----ACGG--TTT----TAAAATGAa
gi|8 : TTTCACATTA-A-CTTCTA-CTGTGTCATT----ATAGCTTC----TATTATAA-AGT-------AAACACGAATGATCAACATATTAA------------G--AT-TTCATTC--TACTATTTAA-TGCAAATA-TAAATTTAAT-AAGCCATAATA----ATTG--TTT----GAGAATGAGATA-
gi|9 : GGATGATCAACATACATA------------G--AT-CTCAACT--TGCTATTCCT-TAAA------------AAT-AATCTATAAGA----ATGG--CTT----TAAA--GA----------AAATTATAAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TACAAGATAAAGTTATTGGTAGACCTGAGAGCATATTC
Alignments
lowQualScore : 1111111 222222222222222 111111
lowQualScore : 6 0 5 888 3 3 55 8 4 8 2 4 4 3 3 3 0 2 6666 7777 555 9999999 55 0 1 555555555555555 3 4 55 3 2 3 5 3 4 8888 55 8888 3 0 999999
lowQualScore : . . . ... . . .. . . . . . . . . . . . .... .... ... ....... .. . . ............... . . .. . . . . . . .... .. .... . . ......
lowQualScore : 6 4 9 888 5 6 11 0 0 0 6 0 0 3 3 3 4 5 5555 1111 555 1111111 00 2 0 555555555555555 6 1 00 6 6 6 7 6 9 5555 55 5555 6 7 444444
consensus : AGCTTCTNAGTCAAATNTT---AACTTAAGTCA-AA-T-TT-ACCTAA-T-TTTTCACATCA-A-TTTCTA-TGGTGTCATT----ACATTTTC----TATTAAAA-AAT-------A--CGTGAATGNTCAACATATTTA------------G--AT-CTCATCT--TACTATTCAA-TGAAAATA-TAAGCTTAAT-AATCCATAANA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAGA
Reference ( family-83 ) : AGCTTCTNAGTCAAATNTT---AACTTAAGTCA-AA-T-TT-ACCTAA-T-TTTTCACATCA-A-TTTCTA-TGGTGTCATT----ACATTTTC----TATTAAAA-AAT-------A--CGTGAATGNTCAACATATTTA------------G--AT-CTCATCT--TACTATTCAA-TGAAAATA-TAAGCTTAAT-AATCCATAANA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAGA
gi|1 : AGCTTCTAAGGCAAATCTT---AATTTAAGTCA-AAGT-TC-ACCTAA-T-TTTTCACATCA-A-TTT-TA-T-GT----TT-------TTTTC----TATTAAAA-AGT-------A--TGTGAAAGTTCAATAGATTCATTTTTCAATACTGGTAT-CTCATTT--TATCATTCAT-TG--AATAGTAAGCTGAAT-AATCTAT
gi|10 : acaataatgcagatatttggacctgtatgcacaa--AT-CTCATCT--AGTTATTCCA-TAAAAATA-AAAACTTAAT-AATCCATTATA----ATGG--TTTGACGGAGAATAACAAG-A----AAATCATAA
gi|11 : AGCTTCCGAGTTAACTTTT---AACTTATATTA-AA-T-TTTACCTAA-T-ATTTCATATCA-A-TTTTTA----TGTCATA----ACATTATC----TGTTAAAATAAT-------A--CACGATTATTCGGCAattctgacttaggttttcaacttgggatgctttatgaatatgggtc
gi|12 : tgggcctgtattcatacAGCTTCTTAGTTAAGTCTT---AACTTAAACCA-AG-T-TTGACCTAATT-TTTTCACATCA-A--TTCTA-TGGTTTCATT----ACATTTTC----TACTAAAA-CATG------A--TATGACTGCTTGATATga
gi|13 : attcataaAACTTCT--GTCAAATGTT---ATCT-AAGTCA-AAAT-TT-ACTTAA-G-TTTTCACCTCA-A-CTTTGA-TGGTGTCATT----ATTTTTTT----AATTAAAg
gi|14 : tacaacaatccagatgtgtgcagtacacataaTCATT----ACATATTT----AATTAAAA-CATTTGCTTTA--TATGGATGGTTAACATTTTTA------------G--AC-CCCATCTCGTACCATTCAA-TGACAATA-TTAG-TTAAT--ATCCACAAAA----ATGA--TTT----TAGAg
gi|15 : tAGCTTCTGAGTGAGAT--------CTAAAGTTACAA-T-TT-ACTTGA-T-TGTTCATATCA-G-TTTCTA-TGGTGTCCTC----ACATTT
gi|2 : AGCTTCTTAGTCAAAAATT---ACTCTAAGTCC-AA-T-AT-ACCTTA-T-TTTTCACATCA-G-TTTCTT-TGGTGTTATT----ACATTTTC----TACTAAAA-AAT-------A--TGTGAATGGTCAATATATATA------------T--AT-TTCATTT--TACTATTCAA-TTAAAAGG-TAAGCTAGAT-AATCCATAAGA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAAA
gi|3 : TTTT---ATCTAAAGTG-------TT-ACCCAA-T-TCATAAC-TGA-AGTTTCAA-TGGTTTCAAT----ACATTTTC-----ATAAATA-GAT-------A--CGTGGATGATAAACATATTCA------------T--ATTCTCGTTT--TACTGTTCAA-TAAATATA-CAAGCTTAAC-GGTTCATAAGA----ATGG--TTT----TAATGTGAGATAGG----AAATTAT
gi|4 : cggctgtattcctaaagatt-T-TT-CTCTAA-T-TTTTCTTATTA-A-TTTCAA-TTGTGTCATT----ACATTTGC----TAAT-AAA-ATT-------A--CATGAATGATCAACACATTAA------------G--AT-CCCGTAT--TATTAGTCAATTAAAAATA-TATGTTTAAT-GATCCATAA-A----ATAG--TTT----T-AAATGAGATA-G----AA
gi|5 : atggctgtactcattcaacattttCTTAGTTAACTATTTACAACTTAATTCA-AA-TATT-ACCT---C-TGTTCACGTCA-A-TTCATA-TGGTGCCATTGATGATATATTT----TATTGAAA-CATC------G--CATGGACGTTGAACAGGTTTA------------G-----TTCGTTT--TACTGTTCAA-TGAAGATA-TTAG-TTAATAAATCCATAAAC----ACGT--TTT----TGAAAc
gi|6 : TTGACATCAGA-TTTCGA-TGGCGTTTTT----ACATTTTC----TATTTTAA-A-T-------A--CATAAATGATCAACGTATTTA------------G--AT-CTCAT------CCATTCAA-TGGAAATA-TAAGTTTACT-AATCCATAAAATAATATAGAACTT----TAAA---AGATA-ATCTTAAATTATAA
gi|7 : aaataA-T-TT-ACCTTA-TATTTTCACATAC-A-TTCCTACTGAT-TCATT----CTATTATCCAAGTACTAAAT-ATT-------A--AGCGGATAG---ATGCATGTA--------------------CATCT--TATTATTATA-T-AAAATA-TAAGCTTAAT-AATTCATTATA----ACGG--TTT----TAAAATGAa
gi|8 : TTTCACATTA-A-CTTCTA-CTGTGTCATT----ATAGCTTC----TATTATAA-AGT-------AAACACGAATGATCAACATATTAA------------G--AT-TTCATTC--TACTATTTAA-TGCAAATA-TAAATTTAAT-AAGCCATAATA----ATTG--TTT----GAGAATGAGATA-
gi|9 : GGATGATCAACATACATA------------G--AT-CTCAACT--TGCTATTCCT-TAAA------------AAT-AATCTATAAGA----ATGG--CTT----TAAA--GA----------AAATTATAAGA
blockSeqs : G T TAC A T AC A A T A T A G G C G GATG CAAG TAA TTGCTTT AA T G T C CG T A . C A A TAAT AA . A ATCTT
blockSeqs : T C . A T A . . G A . . . . . T . . CA G . C T . C . . G . C . G . . . G GG
blockSeqs : G G . T A A . . . A . . . . . G . . CA C . G T . T . . T . C . G . . . A G
blockSeqs : T A . C T A . . . G . . . . . G . . AA . . G G . T . . A . T . A . . . A G
blockSeqs : T T . T A C . . . T . . . . . G . . GA . . A G . A . . A . T . A . . . A .
blockSeqs : . A . A T A . . . A . . . . . T . . AT . . A G . T . . G . C . T . . . A
blockSeqs : . . . . . . . . A . . . . . G . . CA . . T G . C . . G . T . T . . . .
blockSeqs : . . . T . . . . . G . . AT . . A G . T . . G . . . G . . . .
blockSeqs : . . . . . . . . . G . . AG . . G . . C . . A . . . . . . .
blockSeqs : . . . G . . A . . A . . . . . . . .
blockSeqs : . . . . . . A
blockSeqs : .
blockSeqCons : G************** ****
originalCons : AGCTTCTNAGTCAAATNTT---AACTTAAGTCA-AA-T-TT-ACCTAA-T-TTTTCACATCA-A-TTTCTA-TGGTGTCATT----ACATTTTC----TATTAAAA-AAT-------A--CGTGAATGNTCAACATATTTA------------G--AT-CTCATCT--TACTATTCAA-TGAAAATA-TAAGCTTAAT-AATCCATAANA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAGA
finalCons : AGCTTCTNAGTCAAATNTT---AACTTAAGTCA-AA-T-TT-ACCTAA-T-TTTTCACATCA-A-TTTCTA-TGGTGTCATT----ACATTTTC----TATTAAAA-AAT-------A--CGTGAATGNTCAACATATTTAG--------------AT-CTCATCT--TACTATTCAA-TGAAAATA-TAAGCTTAAT-AATCCATAANA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TACAAGATAAAGTTATTGGTAGACCTGAGAGCATATTC
Alignments
lowQualScore : 1111111 222222222222222 111111
lowQualScore : 6 0 5 888 3 3 55 8 4 8 2 4 4 3 3 3 0 2 6666 7777 555 9999999 55 0 1 555555555555555 3 4 55 3 2 3 5 3 4 8888 55 8888 3 0 999999
lowQualScore : . . . ... . . .. . . . . . . . . . . . .... .... ... ....... .. . . ............... . . .. . . . . . . .... .. .... . . ......
lowQualScore : 6 4 9 888 5 6 11 0 0 0 6 0 0 3 3 3 4 5 5555 1111 555 1111111 00 2 0 555555555555555 6 1 00 6 6 6 7 6 9 5555 55 5555 6 7 444444
consensus : AGCTTCTNAGTCAAATNTT---AACTTAAGTCA-AA-T-TT-ACCTAA-T-TTTTCACATCA-A-TTTCTA-TGGTGTCATT----ACATTTTC----TATTAAAA-AAT-------A--CGTGAATGNTCAACATATTTA------------G--AT-CTCATCT--TACTATTCAA-TGAAAATA-TAAGCTTAAT-AATCCATAANA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAGA
Reference ( family-83 ) : AGCTTCTNAGTCAAATNTT---AACTTAAGTCA-AA-T-TT-ACCTAA-T-TTTTCACATCA-A-TTTCTA-TGGTGTCATT----ACATTTTC----TATTAAAA-AAT-------A--CGTGAATGNTCAACATATTTA------------G--AT-CTCATCT--TACTATTCAA-TGAAAATA-TAAGCTTAAT-AATCCATAANA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAGA
gi|1 : AGCTTCTAAGGCAAATCTT---AATTTAAGTCA-AAGT-TC-ACCTAA-T-TTTTCACATCA-A-TTT-TA-T-GT----TT-------TTTTC----TATTAAAA-AGT-------A--TGTGAAAGTTCAATAGATTCATTTTTCAATACTGGTAT-CTCATTT--TATCATTCAT-TG--AATAGTAAGCTGAAT-AATCTAT
gi|10 : acaataatgcagatatttggacctgtatgcacaa--AT-CTCATCT--AGTTATTCCA-TAAAAATA-AAAACTTAAT-AATCCATTATA----ATGG--TTTGACGGAGAATAACAAG-A----AAATCATAA
gi|11 : AGCTTCCGAGTTAACTTTT---AACTTATATTA-AA-T-TTTACCTAA-T-ATTTCATATCA-A-TTTTTA----TGTCATA----ACATTATC----TGTTAAAATAAT-------A--CACGATTATTCGGCAattctgacttaggttttcaacttgggatgctttatgaatatgggtc
gi|12 : tgggcctgtattcatacAGCTTCTTAGTTAAGTCTT---AACTTAAACCA-AG-T-TTGACCTAATT-TTTTCACATCA-A--TTCTA-TGGTTTCATT----ACATTTTC----TACTAAAA-CATG------A--TATGACTGCTTGATATga
gi|13 : attcataaAACTTCT--GTCAAATGTT---ATCT-AAGTCA-AAAT-TT-ACTTAA-G-TTTTCACCTCA-A-CTTTGA-TGGTGTCATT----ATTTTTTT----AATTAAAg
gi|14 : tacaacaatccagatgtgtgcagtacacataaTCATT----ACATATTT----AATTAAAA-CATTTGCTTTA--TATGGATGGTTAACATTTTTA------------G--AC-CCCATCTCGTACCATTCAA-TGACAATA-TTAG-TTAAT--ATCCACAAAA----ATGA--TTT----TAGAg
gi|15 : tAGCTTCTGAGTGAGAT--------CTAAAGTTACAA-T-TT-ACTTGA-T-TGTTCATATCA-G-TTTCTA-TGGTGTCCTC----ACATTT
gi|2 : AGCTTCTTAGTCAAAAATT---ACTCTAAGTCC-AA-T-AT-ACCTTA-T-TTTTCACATCA-G-TTTCTT-TGGTGTTATT----ACATTTTC----TACTAAAA-AAT-------A--TGTGAATGGTCAATATATATA------------T--AT-TTCATTT--TACTATTCAA-TTAAAAGG-TAAGCTAGAT-AATCCATAAGA----ATGG--TTT----TAAAATGAGATA-G----AAATTATAAAA
gi|3 : TTTT---ATCTAAAGTG-------TT-ACCCAA-T-TCATAAC-TGA-AGTTTCAA-TGGTTTCAAT----ACATTTTC-----ATAAATA-GAT-------A--CGTGGATGATAAACATATTCA------------T--ATTCTCGTTT--TACTGTTCAA-TAAATATA-CAAGCTTAAC-GGTTCATAAGA----ATGG--TTT----TAATGTGAGATAGG----AAATTAT
gi|4 : cggctgtattcctaaagatt-T-TT-CTCTAA-T-TTTTCTTATTA-A-TTTCAA-TTGTGTCATT----ACATTTGC----TAAT-AAA-ATT-------A--CATGAATGATCAACACATTAA------------G--AT-CCCGTAT--TATTAGTCAATTAAAAATA-TATGTTTAAT-GATCCATAA-A----ATAG--TTT----T-AAATGAGATA-G----AA
gi|5 : atggctgtactcattcaacattttCTTAGTTAACTATTTACAACTTAATTCA-AA-TATT-ACCT---C-TGTTCACGTCA-A-TTCATA-TGGTGCCATTGATGATATATTT----TATTGAAA-CATC------G--CATGGACGTTGAACAGGTTTA------------G-----TTCGTTT--TACTGTTCAA-TGAAGATA-TTAG-TTAATAAATCCATAAAC----ACGT--TTT----TGAAAc
gi|6 : TTGACATCAGA-TTTCGA-TGGCGTTTTT----ACATTTTC----TATTTTAA-A-T-------A--CATAAATGATCAACGTATTTA------------G--AT-CTCAT------CCATTCAA-TGGAAATA-TAAGTTTACT-AATCCATAAAATAATATAGAACTT----TAAA---AGATA-ATCTTAAATTATAA
gi|7 : aaataA-T-TT-ACCTTA-TATTTTCACATAC-A-TTCCTACTGAT-TCATT----CTATTATCCAAGTACTAAAT-ATT-------A--AGCGGATAG---ATGCATGTA--------------------CATCT--TATTATTATA-T-AAAATA-TAAGCTTAAT-AATTCATTATA----ACGG--TTT----TAAAATGAa
gi|8 : TTTCACATTA-A-CTTCTA-CTGTGTCATT----ATAGCTTC----TATTATAA-AGT-------AAACACGAATGATCAACATATTAA------------G--AT-TTCATTC--TACTATTTAA-TGCAAATA-TAAATTTAAT-AAGCCATAATA----ATTG--TTT----GAGAATGAGATA-
gi|9 : GGATGATCAACATACATA------------G--AT-CTCAACT--TGCTATTCCT-TAAA------------AAT-AATCTATAAGA----ATGG--CTT----TAAA--GA----------AAATTATAAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TACAAGATAAAGTTATTGGTAGACCTGAGAGCATATTC