lowQualScore : 4 999999999999999999999999999999 1 111 1 11111 11111 111111111 2222222222222 111 1 111 11 11111 444444444444444444444 111111 6666666666666 1 1 2 11
lowQualScore : 0 999999999999999999999999999999 6 2 333 6 0 6 3 222 2 666 1 99999 5 55555 3 3 3 55 3 5 5 333333333 1 1 2 8 3333333333333 111 6 5 222 6 1 8 44 0 66666 6 777777777777777777777 99 1 3 999999 7 99 7777777777777 3 0 0 555 6 6 88 11 1 8 0 3 1 0 5 5 1 3 0 1 5 0 3 22
lowQualScore : . .............................. . . ... . . . . ... . ... . ..... . ..... . . . .. . . . ......... . . . . ............. ... . . ... . . . .. . ..... . ..................... .. . . ...... . .. ............. . . . ... . . .. .. . . . . . . . . . . . . . . . ..
lowQualScore : 0 555555555555555555555555555555 0 8 555 0 7 2 9 333 1 999 7 99999 0 55555 1 5 6 00 6 7 7 111111111 6 7 5 3 8888888888888 777 7 0 888 0 4 0 66 8 77777 7 888888888888888888888 22 0 2 222222 0 22 8888888888888 0 8 0 000 7 7 88 88 0 2 8 2 0 8 4 0 4 2 8 0 6 8 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAGGTTTATATATT---CGTATCTGAAAACCGNTNTT--GGTTTAAACATATTTTATTTCTCAATNTA-AGTACATTTTATACGATAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAGTGCT---TATGATGTTCTTCTC-CTGCTTA---TGGTGTAAATTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAATA---GTAA-GAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTAAATAA-AATTTTA-AATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACA------GATGGGGTA--GGG----GGCAAGGACAAGTTGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
Reference ( gi|1 ) : ATGCAGTCTCGGATTGTCACCCTGGCGTTTTGGTTTCGAATCCAGCGACAATTTGTTTTACTAGCAATACTTTTTTTTCTTACAGTACTATCCTTTAAAAATTGGTTAAAAAAAAATGATGTCTACATATATGCAAG-TTTATCT-TTGCACATATCTAGCAACTGTTCTTTGGGTTTAAACACATTTTATTTCTCAATATA-AGTACATTTTACACAGTAATACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAATGCT---GATGATGTTCTTCTC-CTGCTGA---TGGTGTAAATTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTTAGTATTA-TTAAATAAATAGTTAAATA---GTAA-GAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAACAGGTACCATGTTGACATACGATATCATAAAGGAAATATTTCTAAATAA-AATTTTT-AATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACA------GATTGGGTA--GGA----GG------CAAGTTGTTTTTAATATCATCGCTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGAGCTCCATAAAGAAGATTTTGTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTTGCTCTATTATATTTAT
gi|9 : TGCAAGGTTTATATATT---CGTATCTGAAAACAGATGTT--GGTTTAAACATACCATATTTCTCAATGTA-A-TACATTTT
gi|12 : TGTTC----AGTTTGAATATACTTTATTTCTCAAAGTA---TACAATGTGTTGAAAAAAACA-TTGTATA-----ATAGAAAAAGG-ACAAAAATGAAAGCATAATTCA---GGTGGAATTCTTCTCTCTCCTGT---TGGC----ATCATATTA-TTAAtttaatataaaacaagggttcgtttcctgatgatgatgtaaattccaatcttgatgacaattcgagtactttatataacatatttaaactgataacagcaatgatattagctattaattactgtaacgataatttttaaaa
gi|10 : TCAAACATATTTTATTTCTCAATATA-AGTACATTTTATACGGTAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAATGCT---TATGATG---TTCTC-CTGCTTA---TGGTGTAAATTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGCTTGTAACATTGACAATTGcat
gi|2 : AACATATTTTATTTCTAAATTTA-AGTACATTTTATACAGTAATACAAGTGTATACAATACTAGAAAAAGG-ATTAGAACGGAAGCATAATGAT---TATGATGTTCTTCTC-CTGCTTG---TGGTGTACATTCTAATA-TTAATAGCAATTCGCGTACTTCGT-TTATA--ATATTT-AACTGGTATTGACATTGACAATTGCAATTATATA-AT-TAA--ATA-------------TTTAG-------------AATAGTTAAATA---GTAA-GAGAAATATGTATTAATCGTAGTCCGTACCAGTAGTTAAGTGGGCTCATACATATACACACTAGGACGAAAAGATACCATG---ACATACGACATCATAAGGGAAATATTTCTAAATAA-AATTTTA-AATCGAATATAGATGGCATAGTTCAT-----AT-CAAATTA--T-AA---------------AAAAAATG--TGAAAGTAATTTGGGGCGACACA------GATGGGGTA--AGG----GGCAAGGACAAGTTGTTCTTAATATCATAGTTAAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATTAAAAAAAACGAATATTGGTTTCAAGTTAGACATTTTGATCTCCATAAAGAAGATTTTCTAGGTTAATAATTGAAATATTACATATTGCGTTTTGTAATACATTCCTCGCCTCATTATATTTAT
gi|11 : tatttgctcacttacattagttAACATATTTTATTTCTCAGTTTA-AACACATTTTATACAATA----AAATTTA-----------------G-ATTAGAACGGATTCACAGTGCT---TATGATATTATTCAC-CTGAT-----TGGTTTAtacagtgaaagaaaaatgttgagcgtatttgacgttgcc
gi|18 : CTTAAT-TACGGTACATTTTATATGATAAAACAAGTTTGCACAATAAGAGAAAAAAA-ATCAGAACAATAGCATAGTGTTTAGAATGAGATTCTtgtcgcattaaataagatactgttctaatatttattcaaataaacgcatgcaatatccaaatattggatagtt
gi|14 : TTTTATGCAATAA-ACAAAAATAAACATTAGCAGAAAAA---AATA-AACGAAAGCAAAGTGCT---TATGATGCTCT---C-CTGATTA---TTTAGTAACTTA-AATA-TTAATGAAAGCTCGTGTAC
gi|15 : ACAAGTGTATACGATAACAGAAAAAAGTATTAAAATAAGAACATAGTACT---TATGCTGTTCTTCTC-TT
gi|6 : tgaaAACGGCCGCATAATGC-----GT-ATGCTCTTCTT-CTCATGAGTTTGATGTTCATTCCAATACTTAACGGAAATTCAGGTGCTT-----TATA-------T-AATCGATAT-AACGCTGACATTTGCAATTGATTACAT-TGC---TA---TTTAAAGTAGACAAGCATTAATGGAATAAAAATTTAAAT-----CAATGAGAAATATTTATGAATCTTAATTGGTACCAGTAAGAAATTTGGCTCAGAC----ACACA--AGTACGAAACGGTACCATGTTAATATACGATAACATGGGAGTGATGTTTCTTTATAAGAATTTTTAAATCGAA--------ATAAGGTTCATATATAAT-TAAAATAATT-AGATCTACAATGACAATAAAAAATT--TGAAAATA-----GGGCGACACA------GATGGGGTA--CGA----GG------ttgcaatattacattacatgtatttgtttta
gi|9 : aGTTCGTTTC-CTGATGA---TGATGTAAATTCCAATC-TTGATGACAATTCGAGTACTT--T-ATATAACATATTTAAACTGATAACAGCAATGATATTAGCTATTAATTA-CTGTAACGATAATTTTTAAAAgacaatgacaaatatttct
gi|5 : tgcaaggtttatatattcgtatctgaaaacagatgttggtttaaacataccatatttctcaatgtaatacatttttttaatataaaacaaggGCTTA---TGTTGTAAATTCTAATA-TTAATGGAAATTCGTGTTCTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTAAGAATAGTTAAGTATTA-TTGAATTAATAGTTAAATA---GTTA-CAAAAATATGTATTAATCGTAGTCGGTACCAGTAGTTTAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATTATAAGGGAAATATTTCTAAATAA-AATTTGT-AATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--TAAA---------------AAAAAATA--TGAAAGTAATTTACGGCGACACA------GATGGGGTA--GGG----GGCAAGGACAAGTTGTTCTTAATATCATAGTTAAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATA
gi|20 : GCTTG---TGGTGTAAATTCTAATA-TTAATGGCAATTTGTGTACTTTGT-TTATA--ATATTT-AACTGGTATTAACATTGACA
gi|19 : GCTTG---TGGTGTAAATTCTTATA-TAAATGGTAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATT
gi|4 : CTTA---TGATGTTAATTCTAATA-TTAATGGCAATTCGTGTACTTTGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--------------ATA-TTTGG-------------AATAGTTAAGTATTAGTAA-GAGAAATATGTATTAATCGAAGTCGGTACCTGTAGTTAAATGGGCTTATACATATACACACTAGAATGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTTAATAA-ATTTTTA-AATCGAATATAGATGGCAAAGTTCAT-----AT-TAAAATA--T--A---------------CAAAAATA--AGAAAGGAATTTGGGGCGACACA------AATTGGGTA--GGG----GGCAAGGACAAGTTGTTCGCAATATCATAGTTGAAGTTGAAGTGATCTACTGTAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT--AAAATACGAATATTTGTTTCAAGTAAGACATTTTGGTCTCCATAAAGA--GTTTT-TAGGTTAATAATTGAAATATTACATAGTGCGTTTCGCAAAACATTCCTCGCTTCATTATATTTAT
gi|3 : ---TGGTGTAAATTCTAATG-TTAATGGCAATTTGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAATA---GTAA-GAGAAATATGTATTAATCGTAGTTGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGGCGAAAAGGTACCA---TGACATACGATAGCATAAGGGAAATATTTCTAAATAA-AATTTTA-AATCGAATATAGATGACAAAGTTCAT-----AT-CAAACTA--T-AA---------------AAAA---A--TGAAAGTAATTTGGGGCGACACA------GATGGGGTATGGGACAAGGA------CAAGTTGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGGATGTGCTGCATT-AAAAATACGAATACTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
gi|8 : cttg---TGGTGAAAATTCTAATA-AAAATAGCAATTAGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAATA---GTAA-GAGAAATATGTATTAATCGTAGTCGGTGCCAGGAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCA---TGACATACGATATCATAAGGGAAATAt
gi|16 : cttgGTAACTTTCAATA-TTAATAAAAGCTCGTGTACTTTATATAACA--ATATGA-AACTAATAGCAGCATGGACATTTGCAAT
gi|7 : gtgtcccaattatgtaCAT-----ACGTAAAATAA-T-AA---------------CACTAATAACTGAGA-----TTGGGGTGACAAATACGGGGATTGGTCA--AGC----A-------CAAATATTTTCT--TATTGTCAC----------GTGTTCTACTCAAA-TCATTTTTGTACTTTTAATAAACGAATGTACTGCATC-AAAAATGTGAAAATTTGTGTCATGTGATATATTTTGAAATCTAAAGAGAAGCGTTT-TAGGTCGATATTTG---TGTT---------GTT------TACATTCATCGCTTCATTATATTTaaaatac
gi|13 : ggaagttttaccaaaacgaattatttattattatggaatcagaAAGTAAAAGAGATCTATGAAAAAGCGCTTT-GTGCTTTTAATATACGAATGTGCTACATT-AAAAATACGA--ATTTGTATCAGGT--GTTATTT-----------AAAAAGAGTTTTTAGATTGATATTTGtagtaaaaggtaactatt
gi|17 : tccttgattatcaggcataaATATTACTT-GTGCGTTTCGTGATTTATCCTTTGCTTCATTATGTTTAT
Alignments
lowQualScore : 1 1 333 1 11 1111111111 11111 333333333333333333333
lowQualScore : 5 3 5 555 3 0 1 1 88 3 6 888 5 1 2 0 0 3 5 0 777 0 4 77777 444 1111111111 2 2 3 44 3 5 5 66 888 888 1 1 0 5 1 8 99 44444 5 777777777777777777777 888 1 999 5 3 5 5 6 1 0 3
lowQualScore : . . . ... . . . . .. . . ... . . . . . . . . ... . . ..... ... .......... . . . .. . . . .. ... ... . . . . . . .. ..... . ..................... ... . ... . . . . . . . .
lowQualScore : 0 0 5 000 0 5 0 0 33 8 6 999 0 1 2 2 8 4 0 2 888 8 0 77777 777 7777777777 7 3 3 66 3 0 0 99 888 444 6 6 7 7 7 4 22 33333 7 111111111111111111111 111 4 666 7 2 7 7 7 7 8 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAGGTTTATNTATTGCACGTATCTGGNAACNGNTNTT--GGTTTAAACATATTTTATTTCTCAATNTA-AGTACA-TTTTATACGATAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAGTGCTT---ATGATGTTCTTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
Reference ( family-813 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAGGTTTATATATT---CGTATCTGAAAACCGNTNTT--GGTTTAAACATATTTTATTTCTCAATNTA-AGTACA-TTTTATACGATAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAGTGCTT---ATGATGTTCTTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
gi|1 : TGCAAG-TTTATCT-TTGCACATATCTAGCAACTGTTCTTTGGGTTTAAACACATTTTATTTCTCAATATA-AGTACA-TTTTACACAGTAATACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAATGCTG---ATGATGTTCTTCTC-CT-----GCTGATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTTAGTATTA-TTAAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAACAGGTACCATGTTGACATACGATATCATAAAGGAAATATTTCTAAATAAAA--TTTTTAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATTGGGTA--GGAGG------CAAGT-TGTTTTTAATATCATCGCTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGAGCTCCATAAAGAAGATTTTGTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTTGCTCTATTATATTTAT
gi|10 : atgcagtctcggattgtcaccctggcgttttggtttcgaatccagcgacaatttgttttactagcaatacttttttttcttacagtactatcctttaaaaattggttaaaaaaaaatgatgtctacatataTCAAACATATTTTATTTCTCAATATA-AGTACA-TTTTATACGGTAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAATGCTT---ATGATG---TTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGCTTGTAACATTGACAATTG
gi|11 : AACATATTTTATTTCTCAGTTTA-AACACA-TTTTATACAATAAAA----TTTA-----------------G-ATTAGAACGGATTCACAGTGCTT---ATGATATTATTCAC-CTGATTGGTTTATGTCGCATTAAATAAGATACTGTTCTAATA-TTTAT
gi|12 : GTTTGAATATACTTTATTTCTCAAAGTA---TACA-ATGTGT-TGAAAAAAACATTGTATA-----ATAGAAAAAGG-ACAAAAATGAAAGCATAATTCAG---GTGGAATTCTTCTCTCT-----CCTGTTGGC-------A----------TCATATTA-TTAAtcaaataaacgcatgcaatatccaaatattggatagtt
gi|13 : tgttcaAAGTAAAAGAGATCTATGAAAAAGCGCTTT-GTGCTTTTAATATACGAATGTGCTACATT-AAAAATACGA--ATTTGTATCAGGTG-----TT---ATTT-----AAAAAGAGTTTTTAGATTGATATTTGcat
gi|14 : tccttgattatcaggcataa-TTTTATGCAATAAA-CAAAAATAAACATTAGCAGAAAAA---AATA-AACGAAAGCAAAGTGCTT---ATGATG---CTCTC-CT-----GATTATTTAG---TAAC----------TTA-AATA-TTAATGAAAGCTCGTGTAC
gi|15 : TGAAACAAGTGTATACGATAACAGAAAAAAGTATTAAAATAAGAACATAGTACTT---ATGCTGTTCTTCTC-TT-----
gi|16 : TC-CC-----AATTATGTAG---TAAC----------TTTCAATA-TTAATAAAAGCTCGTGTACTTTATATAACA--ATATGA-AACTAATAGCAGCATGGACATTTGCAATttgcaatattacattacatgtatttgtttta
gi|17 : gtgATATTACTT-GTGCGTTTCGTGATTTATCCTTTGCTTCATTATGTTTATaaaatac
gi|18 : CTTAAT-TACGGTACA-TTTTATATGATAAAACAAGTTTGCACAATAAGAGAAAAAAA-ATCAGAACAATAGCATAGTGTTTAGAATGAGATTCTagcaataaaagaacactgttgagcgcacggtttttaacgttgcca
gi|19 : -----GCTTGTGGTG---TAAA----------TTCTTATA-TAAATGGTAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATT
gi|2 : TT--AGTT--AACATATTTTATTTCTAAATTTA-AGTACA-TTTTATACAGTAATACAAGTGTATACAATACTAGAAAAAGG-ATTAGAACGGAAGCATAATGATT---ATGATGTTCTTCTC-CT-----GCTTGTGGTG---TACA----------TTCTAATA-TTAATAGCAATTCGCGTACTTCGT-TTATA--ATATTT-AACTGGTATTGACATTGACAATTGCAATTATATA-AT-TAA--ATA---TTTAGAATAGTTAA-----------------------AT-AGTAAGAGAAATATGTATTAATCGTAGTCCGTACCAGTAGTTAAGTGGGCTCATACATATACACACTAGGACGAAAAGATACCATG---ACATACGACATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGGCATAGTTCAT-----AT-CAAATTA--T-AA---------------AAAAAATG--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--AGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTAAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATTAAAAAAAACGAATATTGGTTTCAAGTTAGACATTTTGATCTCCATAAAGAAGATTTTCTAGGTTAATAATTGAAATATTACATATTGCGTTTTGTAATACATTCCTCGCCTCATTATATTTAT
gi|20 : tatttgctcacttaca-----GCTTGTGGTG---TAAA----------TTCTAATA-TTAATGGCAATTTGTGTACTTTGT-TTATA--ATATTT-AACTGGTATTAACATTGACAtacagtgaaagaaaaatgttgagcgtatttgacgttgcc
gi|3 : CTTGTGGTG---TAAA----------TTCTAATG-TTAATGGCAATTTGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTTGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGGCGAAAAGGTACCATG---ACATACGATAGCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-CAAACTA--T-AA---------------AAAAA-----TGAAAGTAATTTGGGGCGACACAGATGGGGTA--TGGGACAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGGATGTGCTGCATT-AAAAATACGAATACTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
gi|4 : CTTATGATG---TTAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTTGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTGGAATAGTTAAGTATTA---------------------GTAAGAGAAATATGTATTAATCGAAGTCGGTACCTGTAGTTAAATGGGCTTATACATATACACACTAGAATGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTTAATAAAT--TTTTAAATCGAATATAGATGGCAAAGTTCAT-----AT-TAAAATA--T--A---------------CAAAAATA--AGAAAGGAATTTGGGGCGACACAAATTGGGTA--GGGGGCAAGGACAAGT-TGTTCGCAATATCATAGTTGAAGTTGAAGTGATCTACTGTAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT--AAAATACGAATATTTGTTTCAAGTAAGACATTTTGGTCTCCATA---AAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGCAAAACATTCCTCGCTTCATTATATTTATt
gi|5 : -----GCTTATGTTG---TAAA----------TTCTAATA-TTAATGGAAATTCGTGTTCTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTAAGAATAGTTAAGTATTA-TTGAATTAATAGTTAAAT-AGTTACAAAAATATGTATTAATCGTAGTCGGTACCAGTAGTTTAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATTATAAGGGAAATATTTCTAAATAAAA--TTTGTAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--TAAA---------------AAAAAATA--TGAAAGTAATTTACGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTAAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATA
gi|6 : AACGGCCGCATAATGCGT---ATGCTCTTCTTCTC-AT-----GAGTTTGATG---TTCA----------TTCCAATACTTAACGGAAATTCAGGTGCTT-----TATA-------T-AATCGATAT-AACGCTGACATTTGCAATTGATTACAT-TGC---TA---TTTAAAGTAGACAAGCATTAATGGAATAAAAATTTAAATCAAT--GAGAAATATTTATGAATCTTAATTGGTACCAGTAAGAAATTTGGCTCAGAC----ACACA--AGTACGAAACGGTACCATGTTAATATACGATAACATGGGAGTGATGTTTCTTTATAAGAATTTTTAAATCGAA--------ATAAGGTTCATATATAAT-TAAAATAATT-AGATCTACAATGACAATAAAAAATT--TGAAAATA-----GGGCGACACAGATGGGGTACGAGGGACAATGACAAAT-ATTTCT
gi|7 : aCAT-----ACGTAAAATAA-T-AA---------------CACTAATAACTGAGA-----TTGGGGTGACAAATACGGGG-A--TTGGTCAAGCACAAATATTTTCTTATTGTCAC-------------GTGTTCTACTCAAA-TCATTTTTGTACTTTTAATAAACGAATGTACTGCATC-AAAAATGTGAAAATTTGTGTCATGTGATATATTTTGAAATCTAAAGAGAAGCG-TTTTAGGTCGATATTTG---TGTT---------GTT------TACATTCATCGCTTCATTATATTT
gi|8 : ggaagttttaccaaaacgaattatttattattatggaatcagaCTTGTGGTG---AAAA----------TTCTAATA-AAAATAGCAATTAGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTGCCAGGAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCA---TGACATACGATATCATAAGGGAAATAtagtaaaaggtaactatt
gi|9 : TGCAAGGTTTATATATT---CGTATCTGAAAACAGATGTT--GGTTTAAACATACCATATTTCTCAATGTA-A-TACATTTTTTTAATATAAAACAAGGGT
gi|9 : GTTCGTTTC-CT-----GATGATGATG---TAAA----------TTCCAATC-TTGATGACAATTCGAGTACTT--T-ATATAACATATTTAAACTGATAACAGCAATGATATTAGCTATTAATTA-CTGTAACGATAATTTTTAAAAtcgtttcctgatgatgatgtaaattccaatcttgatgacaattcgagtactttatataacatatttaaactgataacagcaatgatattagctattaattactgtaacgataatttttaaaa
Alignments
lowQualScore : 1 1 222 11 1111111111 11111 333333333333333333333
lowQualScore : 5 1 5 000 44 1 1 1 88 3 6 888 5 1 2 0 0 3 5 0 777 0 4 77777 444 1111111111 2 2 3 44 3 5 5 66 888 888 1 1 0 5 1 8 99 44444 5 777777777777777777777 888 1 999 5 3 5 5 6 1 0 3
lowQualScore : . . . ... .. . . . .. . . ... . . . . . . . . ... . . ..... ... .......... . . . .. . . . .. ... ... . . . . . . .. ..... . ..................... ... . ... . . . . . . . .
lowQualScore : 0 0 5 555 77 0 0 0 33 8 6 999 0 1 2 2 8 4 0 2 888 8 0 77777 777 7777777777 7 3 3 66 3 0 0 99 888 444 6 6 7 7 7 4 22 33333 7 111111111111111111111 111 4 666 7 2 7 7 7 7 8 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAGGTTTATNTATTGCACGTATCTGNNAACTGACGTT--GGTTTAAACATATTTTATTTCTCAATNTA-AGTACA-TTTTATACGATAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAGTGCTT---ATGATGTTCTTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
Reference ( family-813 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAGGTTTATNTATTGCACGTATCTGGNAACNGNTNTT--GGTTTAAACATATTTTATTTCTCAATNTA-AGTACA-TTTTATACGATAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAGTGCTT---ATGATGTTCTTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
gi|1 : TGCAAG-TTTATCT-TTGCACATATCTAGCAACTGTTCTTTGGGTTTAAACACATTTTATTTCTCAATATA-AGTACA-TTTTACACAGTAATACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAATGCTG---ATGATGTTCTTCTC-CT-----GCTGATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTTAGTATTA-TTAAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAACAGGTACCATGTTGACATACGATATCATAAAGGAAATATTTCTAAATAAAA--TTTTTAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATTGGGTA--GGAGG------CAAGT-TGTTTTTAATATCATCGCTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGAGCTCCATAAAGAAGATTTTGTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTTGCTCTATTATATTTAT
gi|10 : atgcagtctcggattgtcaccctggcgttttggtttcgaatccagcgacaatttgttttactagcaatacttttttttcttacagtactatcctttaaaaattggttaaaaaaaaatgatgtctacatataTCAAACATATTTTATTTCTCAATATA-AGTACA-TTTTATACGGTAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAATGCTT---ATGATG---TTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGCTTGTAACATTGACAATTG
gi|11 : AACATATTTTATTTCTCAGTTTA-AACACA-TTTTATACAATAAAA----TTTA-----------------G-ATTAGAACGGATTCACAGTGCTT---ATGATATTATTCAC-CTGATTGGTTTATGTCGCATTAAATAAGATACTGTTCTAATA-TTTAT
gi|12 : GTTTGAATATACTTTATTTCTCAAAGTA---TACA-ATGTGT-TGAAAAAAACATTGTATA-----ATAGAAAAAGG-ACAAAAATGAAAGCATAATTCAG---GTGGAATTCTTCTCTCT-----CCTGTTGGC-------A----------TCATATTA-TTAAtcaaataaacgcatgcaatatccaaatattggatagtt
gi|13 : tgttcaAAGTAAAAGAGATCTATGAAAAAGCGCTTT-GTGCTTTTAATATACGAATGTGCTACATT-AAAAATACGA--ATTTGTATCAGGTG-----TT---ATTT-----AAAAAGAGTTTTTAGATTGATATTTGcat
gi|14 : tccttgattatcaggcataa-TTTTATGCAATAAA-CAAAAATAAACATTAGCAGAAAAA---AATA-AACGAAAGCAAAGTGCTT---ATGATG---CTCTC-CT-----GATTATTTAG---TAAC----------TTA-AATA-TTAATGAAAGCTCGTGTAC
gi|15 : TGAAACAAGTGTATACGATAACAGAAAAAAGTATTAAAATAAGAACATAGTACTT---ATGCTGTTCTTCTC-TT-----
gi|16 : TC-CC-----AATTATGTAG---TAAC----------TTTCAATA-TTAATAAAAGCTCGTGTACTTTATATAACA--ATATGA-AACTAATAGCAGCATGGACATTTGCAATttgcaatattacattacatgtatttgtttta
gi|17 : gtgATATTACTT-GTGCGTTTCGTGATTTATCCTTTGCTTCATTATGTTTATaaaatac
gi|18 : CTTAAT-TACGGTACA-TTTTATATGATAAAACAAGTTTGCACAATAAGAGAAAAAAA-ATCAGAACAATAGCATAGTGTTTAGAATGAGATTCTagcaataaaagaacactgttgagcgcacggtttttaacgttgcca
gi|19 : -----GCTTGTGGTG---TAAA----------TTCTTATA-TAAATGGTAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATT
gi|2 : TATTTGCTCACTTACATT--AGTT--AACATATTTTATTTCTAAATTTA-AGTACA-TTTTATACAGTAATACAAGTGTATACAATACTAGAAAAAGG-ATTAGAACGGAAGCATAATGATT---ATGATGTTCTTCTC-CT-----GCTTGTGGTG---TACA----------TTCTAATA-TTAATAGCAATTCGCGTACTTCGT-TTATA--ATATTT-AACTGGTATTGACATTGACAATTGCAATTATATA-AT-TAA--ATA---TTTAGAATAGTTAA-----------------------AT-AGTAAGAGAAATATGTATTAATCGTAGTCCGTACCAGTAGTTAAGTGGGCTCATACATATACACACTAGGACGAAAAGATACCATG---ACATACGACATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGGCATAGTTCAT-----AT-CAAATTA--T-AA---------------AAAAAATG--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--AGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTAAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATTAAAAAAAACGAATATTGGTTTCAAGTTAGACATTTTGATCTCCATAAAGAAGATTTTCTAGGTTAATAATTGAAATATTACATATTGCGTTTTGTAATACATTCCTCGCCTCATTATATTTAT
gi|20 : -----GCTTGTGGTG---TAAA----------TTCTAATA-TTAATGGCAATTTGTGTACTTTGT-TTATA--ATATTT-AACTGGTATTAACATTGACAtacagtgaaagaaaaatgttgagcgtatttgacgttgcc
gi|3 : CTTGTGGTG---TAAA----------TTCTAATG-TTAATGGCAATTTGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTTGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGGCGAAAAGGTACCATG---ACATACGATAGCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-CAAACTA--T-AA---------------AAAAA-----TGAAAGTAATTTGGGGCGACACAGATGGGGTA--TGGGACAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGGATGTGCTGCATT-AAAAATACGAATACTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
gi|4 : CTTATGATG---TTAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTTGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTGGAATAGTTAAGTATTA---------------------GTAAGAGAAATATGTATTAATCGAAGTCGGTACCTGTAGTTAAATGGGCTTATACATATACACACTAGAATGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTTAATAAAT--TTTTAAATCGAATATAGATGGCAAAGTTCAT-----AT-TAAAATA--T--A---------------CAAAAATA--AGAAAGGAATTTGGGGCGACACAAATTGGGTA--GGGGGCAAGGACAAGT-TGTTCGCAATATCATAGTTGAAGTTGAAGTGATCTACTGTAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT--AAAATACGAATATTTGTTTCAAGTAAGACATTTTGGTCTCCATA---AAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGCAAAACATTCCTCGCTTCATTATATTTATt
gi|5 : -----GCTTATGTTG---TAAA----------TTCTAATA-TTAATGGAAATTCGTGTTCTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTAAGAATAGTTAAGTATTA-TTGAATTAATAGTTAAAT-AGTTACAAAAATATGTATTAATCGTAGTCGGTACCAGTAGTTTAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATTATAAGGGAAATATTTCTAAATAAAA--TTTGTAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--TAAA---------------AAAAAATA--TGAAAGTAATTTACGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTAAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATA
gi|6 : AACGGCCGCATAATGCGT---ATGCTCTTCTTCTC-AT-----GAGTTTGATG---TTCA----------TTCCAATACTTAACGGAAATTCAGGTGCTT-----TATA-------T-AATCGATAT-AACGCTGACATTTGCAATTGATTACAT-TGC---TA---TTTAAAGTAGACAAGCATTAATGGAATAAAAATTTAAATCAAT--GAGAAATATTTATGAATCTTAATTGGTACCAGTAAGAAATTTGGCTCAGAC----ACACA--AGTACGAAACGGTACCATGTTAATATACGATAACATGGGAGTGATGTTTCTTTATAAGAATTTTTAAATCGAA--------ATAAGGTTCATATATAAT-TAAAATAATT-AGATCTACAATGACAATAAAAAATT--TGAAAATA-----GGGCGACACAGATGGGGTACGAGGGACAATGACAAAT-ATTTCT
gi|7 : aCAT-----ACGTAAAATAA-T-AA---------------CACTAATAACTGAGA-----TTGGGGTGACAAATACGGGG-A--TTGGTCAAGCACAAATATTTTCTTATTGTCAC-------------GTGTTCTACTCAAA-TCATTTTTGTACTTTTAATAAACGAATGTACTGCATC-AAAAATGTGAAAATTTGTGTCATGTGATATATTTTGAAATCTAAAGAGAAGCG-TTTTAGGTCGATATTTG---TGTT---------GTT------TACATTCATCGCTTCATTATATTT
gi|8 : ggaagttttaccaaaacgaattatttattattatggaatcagaCTTGTGGTG---AAAA----------TTCTAATA-AAAATAGCAATTAGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTGCCAGGAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCA---TGACATACGATATCATAAGGGAAATAtagtaaaaggtaactatt
gi|9 : TGCAAGGTTTATATATT---CGTATCTGAAAACAGATGTT--GGTTTAAACATACCATATTTCTCAATGTA-A-TACATTTTTTTAATATAAAACAAGGGT
gi|9 : GTTCGTTTC-CT-----GATGATGATG---TAAA----------TTCCAATC-TTGATGACAATTCGAGTACTT--T-ATATAACATATTTAAACTGATAACAGCAATGATATTAGCTATTAATTA-CTGTAACGATAATTTTTAAAAtcgtttcctgatgatgatgtaaattccaatcttgatgacaattcgagtactttatataacatatttaaactgataacagcaatgatattagctattaattactgtaacgataatttttaaaa
Alignments
lowQualScore : 1 1 222 11 1111111111 11111 333333333333333333333
lowQualScore : 5 1 5 000 22 44 88 3 6 888 5 1 2 0 0 3 5 0 777 0 4 77777 444 1111111111 2 2 3 44 3 5 5 66 888 888 1 1 0 5 1 8 99 44444 5 777777777777777777777 888 1 999 5 3 5 5 6 1 0 3
lowQualScore : . . . ... .. .. .. . . ... . . . . . . . . ... . . ..... ... .......... . . . .. . . . .. ... ... . . . . . . .. ..... . ..................... ... . ... . . . . . . . .
lowQualScore : 0 0 5 555 00 33 33 8 6 999 0 1 2 2 8 4 0 2 888 8 0 77777 777 7777777777 7 3 3 66 3 0 0 99 888 444 6 6 7 7 7 4 22 33333 7 111111111111111111111 111 4 666 7 2 7 7 7 7 8 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAGGTTTATNTATTGCACGTATCTGNNAACTGACGTT--GGTTTAAACATATTTTATTTCTCAATNTA-AGTACA-TTTTATACGATAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAGTGCTT---ATGATGTTCTTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
Reference ( family-813 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAGGTTTATNTATTGCACGTATCTGNNAACTGACGTT--GGTTTAAACATATTTTATTTCTCAATNTA-AGTACA-TTTTATACGATAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAGTGCTT---ATGATGTTCTTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
gi|1 : TGCAAG-TTTATCT-TTGCACATATCTAGCAACTGTTCTTTGGGTTTAAACACATTTTATTTCTCAATATA-AGTACA-TTTTACACAGTAATACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAATGCTG---ATGATGTTCTTCTC-CT-----GCTGATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTTAGTATTA-TTAAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAACAGGTACCATGTTGACATACGATATCATAAAGGAAATATTTCTAAATAAAA--TTTTTAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATTGGGTA--GGAGG------CAAGT-TGTTTTTAATATCATCGCTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGAGCTCCATAAAGAAGATTTTGTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTTGCTCTATTATATTTAT
gi|10 : atgcagtctcggattgtcaccctggcgttttggtttcgaatccagcgacaatttgttttactagcaatacttttttttcttacagtactatcctttaaaaattggttaaaaaaaaatgatgtctacatataTCAAACATATTTTATTTCTCAATATA-AGTACA-TTTTATACGGTAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAATGCTT---ATGATG---TTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGCTTGTAACATTGACAATTG
gi|11 : AACATATTTTATTTCTCAGTTTA-AACACA-TTTTATACAATAAAA----TTTA-----------------G-ATTAGAACGGATTCACAGTGCTT---ATGATATTATTCAC-CTGATTGGTTTATGTCGCATTAAATAAGATACTGTTCTAATA-TTTAT
gi|12 : GTTTGAATATACTTTATTTCTCAAAGTA---TACA-ATGTGT-TGAAAAAAACATTGTATA-----ATAGAAAAAGG-ACAAAAATGAAAGCATAATTCAG---GTGGAATTCTTCTCTCT-----CCTGTTGGC-------A----------TCATATTA-TTAAtcaaataaacgcatgcaatatccaaatattggatagtt
gi|13 : tgttcaAAGTAAAAGAGATCTATGAAAAAGCGCTTT-GTGCTTTTAATATACGAATGTGCTACATT-AAAAATACGA--ATTTGTATCAGGTG-----TT---ATTT-----AAAAAGAGTTTTTAGATTGATATTTGcat
gi|14 : tccttgattatcaggcataa-TTTTATGCAATAAA-CAAAAATAAACATTAGCAGAAAAA---AATA-AACGAAAGCAAAGTGCTT---ATGATG---CTCTC-CT-----GATTATTTAG---TAAC----------TTA-AATA-TTAATGAAAGCTCGTGTAC
gi|15 : TGAAACAAGTGTATACGATAACAGAAAAAAGTATTAAAATAAGAACATAGTACTT---ATGCTGTTCTTCTC-TT-----
gi|16 : TC-CC-----AATTATGTAG---TAAC----------TTTCAATA-TTAATAAAAGCTCGTGTACTTTATATAACA--ATATGA-AACTAATAGCAGCATGGACATTTGCAATttgcaatattacattacatgtatttgtttta
gi|17 : gtgATATTACTT-GTGCGTTTCGTGATTTATCCTTTGCTTCATTATGTTTATaaaatac
gi|18 : CTTAAT-TACGGTACA-TTTTATATGATAAAACAAGTTTGCACAATAAGAGAAAAAAA-ATCAGAACAATAGCATAGTGTTTAGAATGAGATTCTagcaataaaagaacactgttgagcgcacggtttttaacgttgcca
gi|19 : -----GCTTGTGGTG---TAAA----------TTCTTATA-TAAATGGTAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATT
gi|2 : TATTTGCTCACTTACATT--AGTT--AACATATTTTATTTCTAAATTTA-AGTACA-TTTTATACAGTAATACAAGTGTATACAATACTAGAAAAAGG-ATTAGAACGGAAGCATAATGATT---ATGATGTTCTTCTC-CT-----GCTTGTGGTG---TACA----------TTCTAATA-TTAATAGCAATTCGCGTACTTCGT-TTATA--ATATTT-AACTGGTATTGACATTGACAATTGCAATTATATA-AT-TAA--ATA---TTTAGAATAGTTAA-----------------------AT-AGTAAGAGAAATATGTATTAATCGTAGTCCGTACCAGTAGTTAAGTGGGCTCATACATATACACACTAGGACGAAAAGATACCATG---ACATACGACATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGGCATAGTTCAT-----AT-CAAATTA--T-AA---------------AAAAAATG--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--AGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTAAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATTAAAAAAAACGAATATTGGTTTCAAGTTAGACATTTTGATCTCCATAAAGAAGATTTTCTAGGTTAATAATTGAAATATTACATATTGCGTTTTGTAATACATTCCTCGCCTCATTATATTTAT
gi|20 : -----GCTTGTGGTG---TAAA----------TTCTAATA-TTAATGGCAATTTGTGTACTTTGT-TTATA--ATATTT-AACTGGTATTAACATTGACAtacagtgaaagaaaaatgttgagcgtatttgacgttgcc
gi|3 : CTTGTGGTG---TAAA----------TTCTAATG-TTAATGGCAATTTGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTTGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGGCGAAAAGGTACCATG---ACATACGATAGCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-CAAACTA--T-AA---------------AAAAA-----TGAAAGTAATTTGGGGCGACACAGATGGGGTA--TGGGACAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGGATGTGCTGCATT-AAAAATACGAATACTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
gi|4 : CTTATGATG---TTAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTTGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTGGAATAGTTAAGTATTA---------------------GTAAGAGAAATATGTATTAATCGAAGTCGGTACCTGTAGTTAAATGGGCTTATACATATACACACTAGAATGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTTAATAAAT--TTTTAAATCGAATATAGATGGCAAAGTTCAT-----AT-TAAAATA--T--A---------------CAAAAATA--AGAAAGGAATTTGGGGCGACACAAATTGGGTA--GGGGGCAAGGACAAGT-TGTTCGCAATATCATAGTTGAAGTTGAAGTGATCTACTGTAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT--AAAATACGAATATTTGTTTCAAGTAAGACATTTTGGTCTCCATA---AAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGCAAAACATTCCTCGCTTCATTATATTTATt
gi|5 : -----GCTTATGTTG---TAAA----------TTCTAATA-TTAATGGAAATTCGTGTTCTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTAAGAATAGTTAAGTATTA-TTGAATTAATAGTTAAAT-AGTTACAAAAATATGTATTAATCGTAGTCGGTACCAGTAGTTTAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATTATAAGGGAAATATTTCTAAATAAAA--TTTGTAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--TAAA---------------AAAAAATA--TGAAAGTAATTTACGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTAAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATA
gi|6 : AACGGCCGCATAATGCGT---ATGCTCTTCTTCTC-AT-----GAGTTTGATG---TTCA----------TTCCAATACTTAACGGAAATTCAGGTGCTT-----TATA-------T-AATCGATAT-AACGCTGACATTTGCAATTGATTACAT-TGC---TA---TTTAAAGTAGACAAGCATTAATGGAATAAAAATTTAAATCAAT--GAGAAATATTTATGAATCTTAATTGGTACCAGTAAGAAATTTGGCTCAGAC----ACACA--AGTACGAAACGGTACCATGTTAATATACGATAACATGGGAGTGATGTTTCTTTATAAGAATTTTTAAATCGAA--------ATAAGGTTCATATATAAT-TAAAATAATT-AGATCTACAATGACAATAAAAAATT--TGAAAATA-----GGGCGACACAGATGGGGTACGAGGGACAATGACAAAT-ATTTCT
gi|7 : aCAT-----ACGTAAAATAA-T-AA---------------CACTAATAACTGAGA-----TTGGGGTGACAAATACGGGG-A--TTGGTCAAGCACAAATATTTTCTTATTGTCAC-------------GTGTTCTACTCAAA-TCATTTTTGTACTTTTAATAAACGAATGTACTGCATC-AAAAATGTGAAAATTTGTGTCATGTGATATATTTTGAAATCTAAAGAGAAGCG-TTTTAGGTCGATATTTG---TGTT---------GTT------TACATTCATCGCTTCATTATATTT
gi|8 : ggaagttttaccaaaacgaattatttattattatggaatcagaCTTGTGGTG---AAAA----------TTCTAATA-AAAATAGCAATTAGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTGCCAGGAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCA---TGACATACGATATCATAAGGGAAATAtagtaaaaggtaactatt
gi|9 : TGCAAGGTTTATATATT---CGTATCTGAAAACAGATGTT--GGTTTAAACATACCATATTTCTCAATGTA-A-TACATTTTTTTAATATAAAACAAGGGT
gi|9 : GTTCGTTTC-CT-----GATGATGATG---TAAA----------TTCCAATC-TTGATGACAATTCGAGTACTT--T-ATATAACATATTTAAACTGATAACAGCAATGATATTAGCTATTAATTA-CTGTAACGATAATTTTTAAAAtcgtttcctgatgatgatgtaaattccaatcttgatgacaattcgagtactttatataacatatttaaactgataacagcaatgatattagctattaattactgtaacgataatttttaaaa
blockSeqs : G A A . CT CA . C A CGG T G T G T AGA T GATTG CAT TAAGATACTG C C A AC A C G CG ATT ATG A T C A T AT ATATA G ATTAGATCTACAATGACAAT AAC A CGA A A A T A A A
blockSeqs : AA TG . T T AG . A T G . . . . . . . T . . . . . . . TT T T . A T . . . TAAA G A A . A . . . A A
blockSeqs : T G AA . G A A . . . . . . . C . . . . . . . TT A A . A T . . . ATAA A A T . A . . . A A
blockSeqs : . T AG . A T A . . . . . . . C . . . . . . . TT A T . T . . . . TAA A A G . A . . . G .
blockSeqs : G A . G C G . . . . . . . T . . . . . . . . . . . A . . . . TAA T . G . . . . . . .
blockSeqs : . . . A T . . . . . . . . C . . . . . . . . . . . . . . . TA . . T . . .
blockSeqs : . T . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . C . . .
blockSeqs : . . . . . C . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons :
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAGGTTTATNTATTGCACGTATCTGNNAACTGACGTT--GGTTTAAACATATTTTATTTCTCAATNTA-AGTACA-TTTTATACGATAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAGTGCTT---ATGATGTTCTTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAGGTTTATNTATTGCACGTATCTGNNAACTGACGTT--GGTTTAAACATATTTTATTTCTCAATNTA-AGTACA-TTTTATACGATAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAGTGCTT---ATGATGTTCTTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
Alignments
lowQualScore : 1 1 222 11 1111111111 11111 333333333333333333333
lowQualScore : 5 1 5 000 22 44 88 3 6 888 5 1 2 0 0 3 5 0 777 0 4 77777 444 1111111111 2 2 3 44 3 5 5 66 888 888 1 1 0 5 1 8 99 44444 5 777777777777777777777 888 1 999 5 3 5 5 6 1 0 3
lowQualScore : . . . ... .. .. .. . . ... . . . . . . . . ... . . ..... ... .......... . . . .. . . . .. ... ... . . . . . . .. ..... . ..................... ... . ... . . . . . . . .
lowQualScore : 0 0 5 555 00 33 33 8 6 999 0 1 2 2 8 4 0 2 888 8 0 77777 777 7777777777 7 3 3 66 3 0 0 99 888 444 6 6 7 7 7 4 22 33333 7 111111111111111111111 111 4 666 7 2 7 7 7 7 8 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAGGTTTATNTATTGCACGTATCTGNNAACTGACGTT--GGTTTAAACATATTTTATTTCTCAATNTA-AGTACA-TTTTATACGATAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAGTGCTT---ATGATGTTCTTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
Reference ( family-813 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAAGGTTTATNTATTGCACGTATCTGNNAACTGACGTT--GGTTTAAACATATTTTATTTCTCAATNTA-AGTACA-TTTTATACGATAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAGTGCTT---ATGATGTTCTTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
gi|1 : TGCAAG-TTTATCT-TTGCACATATCTAGCAACTGTTCTTTGGGTTTAAACACATTTTATTTCTCAATATA-AGTACA-TTTTACACAGTAATACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAATGCTG---ATGATGTTCTTCTC-CT-----GCTGATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTTAGTATTA-TTAAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGACGAACAGGTACCATGTTGACATACGATATCATAAAGGAAATATTTCTAAATAAAA--TTTTTAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--T-AA---------------AAAAAATA--TGAAAGTAATTTGGGGCGACACAGATTGGGTA--GGAGG------CAAGT-TGTTTTTAATATCATCGCTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT-AAAAATACGAATATTTGTTTCAAGTGAGACATTTTGAGCTCCATAAAGAAGATTTTGTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTTGCTCTATTATATTTAT
gi|10 : atgcagtctcggattgtcaccctggcgttttggtttcgaatccagcgacaatttgttttactagcaatacttttttttcttacagtactatcctttaaaaattggttaaaaaaaaatgatgtctacatataTCAAACATATTTTATTTCTCAATATA-AGTACA-TTTTATACGGTAAAACAAGTGTATACAATAATAGAAAAAGG-ATTAGAACGGAAGCATAATGCTT---ATGATG---TTCTC-CT-----GCTTATGGTG---TAAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGCTTGTAACATTGACAATTG
gi|11 : AACATATTTTATTTCTCAGTTTA-AACACA-TTTTATACAATAAAA----TTTA-----------------G-ATTAGAACGGATTCACAGTGCTT---ATGATATTATTCAC-CTGATTGGTTTATGTCGCATTAAATAAGATACTGTTCTAATA-TTTAT
gi|12 : GTTTGAATATACTTTATTTCTCAAAGTA---TACA-ATGTGT-TGAAAAAAACATTGTATA-----ATAGAAAAAGG-ACAAAAATGAAAGCATAATTCAG---GTGGAATTCTTCTCTCT-----CCTGTTGGC-------A----------TCATATTA-TTAAtcaaataaacgcatgcaatatccaaatattggatagtt
gi|13 : tgttcaAAGTAAAAGAGATCTATGAAAAAGCGCTTT-GTGCTTTTAATATACGAATGTGCTACATT-AAAAATACGA--ATTTGTATCAGGTG-----TT---ATTT-----AAAAAGAGTTTTTAGATTGATATTTGcat
gi|14 : tccttgattatcaggcataa-TTTTATGCAATAAA-CAAAAATAAACATTAGCAGAAAAA---AATA-AACGAAAGCAAAGTGCTT---ATGATG---CTCTC-CT-----GATTATTTAG---TAAC----------TTA-AATA-TTAATGAAAGCTCGTGTAC
gi|15 : TGAAACAAGTGTATACGATAACAGAAAAAAGTATTAAAATAAGAACATAGTACTT---ATGCTGTTCTTCTC-TT-----
gi|16 : TC-CC-----AATTATGTAG---TAAC----------TTTCAATA-TTAATAAAAGCTCGTGTACTTTATATAACA--ATATGA-AACTAATAGCAGCATGGACATTTGCAATttgcaatattacattacatgtatttgtttta
gi|17 : gtgATATTACTT-GTGCGTTTCGTGATTTATCCTTTGCTTCATTATGTTTATaaaatac
gi|18 : CTTAAT-TACGGTACA-TTTTATATGATAAAACAAGTTTGCACAATAAGAGAAAAAAA-ATCAGAACAATAGCATAGTGTTTAGAATGAGATTCTagcaataaaagaacactgttgagcgcacggtttttaacgttgcca
gi|19 : -----GCTTGTGGTG---TAAA----------TTCTTATA-TAAATGGTAATTCGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATT
gi|2 : TATTTGCTCACTTACATT--AGTT--AACATATTTTATTTCTAAATTTA-AGTACA-TTTTATACAGTAATACAAGTGTATACAATACTAGAAAAAGG-ATTAGAACGGAAGCATAATGATT---ATGATGTTCTTCTC-CT-----GCTTGTGGTG---TACA----------TTCTAATA-TTAATAGCAATTCGCGTACTTCGT-TTATA--ATATTT-AACTGGTATTGACATTGACAATTGCAATTATATA-AT-TAA--ATA---TTTAGAATAGTTAA-----------------------AT-AGTAAGAGAAATATGTATTAATCGTAGTCCGTACCAGTAGTTAAGTGGGCTCATACATATACACACTAGGACGAAAAGATACCATG---ACATACGACATCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGGCATAGTTCAT-----AT-CAAATTA--T-AA---------------AAAAAATG--TGAAAGTAATTTGGGGCGACACAGATGGGGTA--AGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTAAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATTAAAAAAAACGAATATTGGTTTCAAGTTAGACATTTTGATCTCCATAAAGAAGATTTTCTAGGTTAATAATTGAAATATTACATATTGCGTTTTGTAATACATTCCTCGCCTCATTATATTTAT
gi|20 : -----GCTTGTGGTG---TAAA----------TTCTAATA-TTAATGGCAATTTGTGTACTTTGT-TTATA--ATATTT-AACTGGTATTAACATTGACAtacagtgaaagaaaaatgttgagcgtatttgacgttgcc
gi|3 : CTTGTGGTG---TAAA----------TTCTAATG-TTAATGGCAATTTGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTTGGTACCAGTAGTTAAATGGGCTCATACATATACACACTAGGGCGAAAAGGTACCATG---ACATACGATAGCATAAGGGAAATATTTCTAAATAAAA--TTTTAAATCGAATATAGATGACAAAGTTCAT-----AT-CAAACTA--T-AA---------------AAAAA-----TGAAAGTAATTTGGGGCGACACAGATGGGGTA--TGGGACAAGGACAAGT-TGTTCTTAATATCATAGTTGAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATACGGATGTGCTGCATT-AAAAATACGAATACTTGTTTCAAGTGAGACATTTTGATCTCCATAAAGAAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGTAATACATTCCTCGCTTCATTATATTTAT
gi|4 : CTTATGATG---TTAA----------TTCTAATA-TTAATGGCAATTCGTGTACTTTGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTGGAATAGTTAAGTATTA---------------------GTAAGAGAAATATGTATTAATCGAAGTCGGTACCTGTAGTTAAATGGGCTTATACATATACACACTAGAATGAAAAGGTACCATGTTGACATACGATATCATAAGGGAAATATTTCTTAATAAAT--TTTTAAATCGAATATAGATGGCAAAGTTCAT-----AT-TAAAATA--T--A---------------CAAAAATA--AGAAAGGAATTTGGGGCGACACAAATTGGGTA--GGGGGCAAGGACAAGT-TGTTCGCAATATCATAGTTGAAGTTGAAGTGATCTACTGTAA-TCGTTTT-GTGCTTTTAATATACGAATGTGCTGCATT--AAAATACGAATATTTGTTTCAAGTAAGACATTTTGGTCTCCATA---AAGAGTTTTTAGGTTAATAATTGAAATATTACATAGTGCGTTTCGCAAAACATTCCTCGCTTCATTATATTTATt
gi|5 : -----GCTTATGTTG---TAAA----------TTCTAATA-TTAATGGAAATTCGTGTTCTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTAAGAATAGTTAAGTATTA-TTGAATTAATAGTTAAAT-AGTTACAAAAATATGTATTAATCGTAGTCGGTACCAGTAGTTTAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCATGTTGACATACGATATTATAAGGGAAATATTTCTAAATAAAA--TTTGTAATCGAATATAGATGACAAAGTTCAT-----AT-TAAAATA--TAAA---------------AAAAAATA--TGAAAGTAATTTACGGCGACACAGATGGGGTA--GGGGGCAAGGACAAGT-TGTTCTTAATATCATAGTTAAAGTTGAAGTGATCTACTAAAA-TCGTTTT-GTGCTTTTAATATA
gi|6 : AACGGCCGCATAATGCGT---ATGCTCTTCTTCTC-AT-----GAGTTTGATG---TTCA----------TTCCAATACTTAACGGAAATTCAGGTGCTT-----TATA-------T-AATCGATAT-AACGCTGACATTTGCAATTGATTACAT-TGC---TA---TTTAAAGTAGACAAGCATTAATGGAATAAAAATTTAAATCAAT--GAGAAATATTTATGAATCTTAATTGGTACCAGTAAGAAATTTGGCTCAGAC----ACACA--AGTACGAAACGGTACCATGTTAATATACGATAACATGGGAGTGATGTTTCTTTATAAGAATTTTTAAATCGAA--------ATAAGGTTCATATATAAT-TAAAATAATT-AGATCTACAATGACAATAAAAAATT--TGAAAATA-----GGGCGACACAGATGGGGTACGAGGGACAATGACAAAT-ATTTCT
gi|7 : aCAT-----ACGTAAAATAA-T-AA---------------CACTAATAACTGAGA-----TTGGGGTGACAAATACGGGG-A--TTGGTCAAGCACAAATATTTTCTTATTGTCAC-------------GTGTTCTACTCAAA-TCATTTTTGTACTTTTAATAAACGAATGTACTGCATC-AAAAATGTGAAAATTTGTGTCATGTGATATATTTTGAAATCTAAAGAGAAGCG-TTTTAGGTCGATATTTG---TGTT---------GTT------TACATTCATCGCTTCATTATATTT
gi|8 : ggaagttttaccaaaacgaattatttattattatggaatcagaCTTGTGGTG---AAAA----------TTCTAATA-AAAATAGCAATTAGTGTACTTCGT-TTATA--ATATTT-AACTGGTATTAACATTGACAATTGCAATTATTTA-AT-TAA--ATA---TTTAGAATAGTTAAGTATTA-TTGAATAAATAGTTAAAT-AGTAAGAGAAATATGTATTAATCGTAGTCGGTGCCAGGAGTTAAATGGGCTCATACATATACACACTAGGACGAAAAGGTACCA---TGACATACGATATCATAAGGGAAATAtagtaaaaggtaactatt
gi|9 : TGCAAGGTTTATATATT---CGTATCTGAAAACAGATGTT--GGTTTAAACATACCATATTTCTCAATGTA-A-TACATTTTTTTAATATAAAACAAGGGT
gi|9 : GTTCGTTTC-CT-----GATGATGATG---TAAA----------TTCCAATC-TTGATGACAATTCGAGTACTT--T-ATATAACATATTTAAACTGATAACAGCAATGATATTAGCTATTAATTA-CTGTAACGATAATTTTTAAAAtcgtttcctgatgatgatgtaaattccaatcttgatgacaattcgagtactttatataacatatttaaactgataacagcaatgatattagctattaattactgtaacgataatttttaaaa