lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222 111111 11111 2222222 11 1 1 33 111 1 1 1 1 11111 1 11 11 1 66666 111111 55555555555555555555555555555555555555555555
lowQualScore : 88 0 7777777777777777777 3 1 3 2 3 55 333 0 55 444444 22222 0000000 55 999999 1 3 3 4 1 0 6 55 666 1 3 3 4 999 1 22 55 2 0 2 2 5 6 9999 11111 66 6 4 4 3 3 4 5 22 6 77 7 6 44 44 0 3 4 0 888 44 5 66666 6 4 55 000000 7777 3 11111111111111111111111111111111111111111111 2 2 5 0 5
lowQualScore : .. . ................... . . . . . .. ... . .. ...... ..... ....... .. ...... . . . . . . . .. ... . . . . ... . .. .. . . . . . . .... ..... .. . . . . . . . .. . .. . . .. .. . . . . ... .. . ..... . . .. ...... .... . ............................................ . . . . .
lowQualScore : 00 1 0000000000000000000 3 3 6 8 6 00 999 5 00 555555 77777 7777777 99 999999 4 6 6 5 4 1 8 00 444 5 6 6 3 555 2 77 88 1 1 5 5 0 0 4444 11111 11 9 0 0 0 1 0 0 22 0 44 4 6 22 66 5 3 8 5 888 22 0 44444 2 6 00 555555 7777 6 11111111111111111111111111111111111111111111 1 2 6 7 7
consensus : AGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-G-GGCGTTGT--TGGGATT-NT--AAAAAAAA-----TGCTTACCTACCAAACC-G--A-TTTTT--AAAGAGGG---TCGGGTTTGGATAAACAATGTGTTAT-T-ATTTATTATTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT---CGGCAGAATATTGAATTATTCTCTGACTGA-ACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGA-GAAAAAAAGGGTTTTAAAACTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTATAAAATGTATATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTTTCTTTTATGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAA-CT-CTGTATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTNTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAG-----AGTACAAGCGATTTCAACNATACACAC--AGTG------TG----T-G--------------ATC-------------T-------------ACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAANGTTCTTGACTTCCGNACC-TTTTTTTTGC
Reference ( gi|1 ) : AGGATATATATTACCCTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAATCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-G-GACATTGT--TGGGATT-TT--AAAAAAAA-----TGCTTACCTACCAAACA-G--A-TTTTT--AAAGAGGG---TCAGGTTTGGATAAACAATGTGTTAT-T-ATTTAATATTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGACAC--TTT---CGGCAGAATATTGAATTATTCTCTGATTAA-ACA-AGTTATTTGTAATAGCAAGTGTGACTTTTTGAGA-AAAAAAAAAGGTTTTAAAACTGGTACATTATATCGACGAGTTTGTTGTAAACTTTGGAATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTCTAAGATGTATATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGACAGTTGTTTACACGATT-TTA-ATTTTCTTTTTCTCTTTAAATTG-TTTTCTTTTATGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAA-CA-CTGTATTGTATGGAAGTCCCCATAATGACCAGATTGATAACTCACATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTCTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTATAGTATTCATGCTCGGCCATTCGCTTTTGTTTTAAAGAAACCTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTCGAATTCAATTAGAGTGCAGTGCAAGCGATTTCAACGATACACAC--AGTG------TG----T-G--------------ATC-------------T-------------ACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAAAGTTCTTAACTTCCGTACC-TTTTTTTTGC
gi|6 : AGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCGCT-----ACT--TCAAACCATGCTGATGAT-ATACATTT-AGCCAACAATTGCTCTATGTTGGG-CA--AGTCGATT-T-TACGTTGT--TTGGATT-TT--TAAAAAAA-----TACTTACCTACCAAACC-G--A-TTTTTT-AAAGATGG---TCGGGTTTGGATAAACGATGTGTTAT-T-GTTTATTATTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCAC--TTTTT-CGGCAGAATACTGAATTATTCTCTTACTAA-ACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGATA-AAAAAAA--GGTTTTAAAACCGGTTAATAATATCGACGAGTTTGTTGTTAACTTTGGAATGAATTCAGACTTCACAACCTTCTTCTATAAAACGTAGGG--TTACTATAAAATGTATATTTTACATTAAAACCATA----TA-----TAC--CTACCATGAGTTCCCAAAGATAGTTGTTTACACGACT-TTA-ATCTTCTTTTTCTCTTTATATTT-TTTTTCTT
gi|7 : tAGGATATATGTTACTTTTCGAAGAATTT-----GTGATATATTACACTAAATTGC--------------------------------ATACATTTTAGCCAAAAGTTACTCTATGTTGGA-CA--AGTCGATT-G-GGCATTGT--TGGGATT-AT--AAAAAAAAA----TGCTTACCTACCAAACC-G--ATTTTTT--AAAGAGGG---TTGGGTTTTGATAAACGATGTGTTAT-T-ATTTATTATTCTGGTCCAGTCGTGTTGTAAAGTAATCAGGTTCGATGCCGTAGTCACTTTTT---CGGCAGAATATTGAATTATTCTCTGATTTA-ACA-AGTTATTTATAATAGCATGGGTGACTTTTTGAGA-GAAATAAAGG--TTTAAAATTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCTTCTTCGGTAAAACGTA-TGGGTCACTATAAAATGTATATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACAAGATT-TTA-ATCTTCTCTTTCTCTTTATATTG-TTTTCTTTTATGGA
gi|2 : tAGGATATATATTACTCTTCGAAGAATTTAATAAGTGGTATATTACACTGAATTGCACT-----ACTGCCCAAACCATGTTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTTGG-CA--AGTCGATT-G-GATGTTGT--TGGGATT-TT--AAAAAAAA-----TGCTTACCTACCATACC-G--A-TTTTT--TGGTTTGGTTTTCGGGTTTGGTTAAATAATGTGTTAT-T-ATTTATTATTCTGGTCGAGTCGTGTTGTAAAATAATCAAGTTTGATGCCATAGTCACTTTTT---CGGCAGAATATTGAATTATTCTCTGATTAA-ACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAAA-GAAAAAAAAGGTTTTAAAACTGGTACATTATATCGACGAGTT
gi|5 : AGGATATATATTACTTTTTGAAGAATTTGATAAGTGATATATTACACTGAAT------------------------TGC--------ATACATTTTAGTCAAAAGTTACTCTATGTTGGA-CA--AGTCGATT-G-GGCGTTGT--TGGGATTATA--AAAAAAAA-----TGCTTACCTACCAAATC-G--ATTTTTT--AAAGAGAG------GGTTTTGATAAACAATGTGTTAT-T-ATTTATTATTCTGGTCAAGTCGTGTTGTAAAGTAATCAAGTTCGAattatatcggtaaaacgtagggggtcactatgcaatgtatattttacattaaaaccataaatacctaccatatgtttccaaagatagttgtttacatgattttaatcttctttttctctttaaaatgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccgacactgtattgcacagcagtccccataatggtcagattgataactcgcataacaacaaacacgacagtacaaaaataaacaacatgtacatgtcgtttcaaagacaatttcgatctttcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcgtgctcggccattcgcttttgttttaaagaatcttatgttaaatgcctgtggtcagccttcttgacaagtggaattcatttagagtacaaccaatttcaacgatacacacagtgtgtgaatcatgtcgacctatttactggctcatattaactgacctttatggtgccgcgaagcatagcatacaaaaaagttcttgacttccgtacctttttttgc
gi|4 : tGAATTTAATAAGTGATACATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAATTGCTCTTTGTTGGG-CA--AGTCAATT-A-GGCGTTGT--TGGGATT-AT---AAATAAA-----TGCTTACCTACCAAACC-G--ATTTTTT--AAAGAGGG---TCGGGTTTTGATAAACAATGTGTTAT-T-ATTTATTGTTCTGGTCGAATTGTGTTGTAAAGTAACCAAGTTTGATGCCGTAGTCACTTTTT---CGGCAGAATATTGAATTATTCTCTGACTGA-ACA-AGTAATTTGAAATTGCAAGGGTGACATTTTGAG--AGAAAAAAAGGATTTAAAACTTGTACATTATATCAACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTTTTCGGTAAAACGTA-TGGGTCACTATAAAATGTATATTTTACATTAAAACCATAATATTA-----TACAACTACCATAAGTT--------------TTT-CTC-----------TTTCTCTTTAT------ATTG-TTTTCTTTTATGAAAAAagttatttgtaatagcaagagtgactttttgagagaaataatggtttaaaattggtacataatatccacgagtttgttgtaaactttgggatgaattcagacttcaaaaccctcttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccatatatacctaccatcagttcccaaagatagttgtttacacgattttaatcttatctttctctttatattgtttttcttttatggaaaatgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagacccaactctgtattgtacggaagtacccataatgctcagattgataactcgcataacaacaaacacgacagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagttttcgtgctcggccattcgcttttgttttaaagaagcttatattaaatgcctgtttaacaccttcatgacaagtggtcagttagagtacaagtgatttcaactatacacacagtgtgtgttcttgtcgacctatttactggctcatattacgtgacctttacggtgccgcgaaacatagtatacaaaaatgttcttgacttccgaaccgttttttt
gi|9 : GAATTTAATAAGTGATATATTACACTGAATTGCTCT-----ACTGCCCAAACCATGCTGATGAT-ATACATGTTAGCCAACAGTTGCTCTATGTTGAG-CA--AGACTATTTG-GGCGTTGT--TTGGTTT-AT--AAAAAAAT-----TGCTTACCTACCAAACC-G--AATTTTT--AAAGAGGG---TAGGGTTTTGATAAACAATGTACTAT-T-ATTTATTATTCTGGTCGAGTCATGTTGTAAAGTAATCAAGTCTGATGCCGTAGTCAC--TTTTT-CGGCAGAATACTGAATTATTCTCTGACTGA-ACA-AGTAATTTGTTATAGC-------------------------AAGGGT-----GACTGGTACATAATATCAACGATATTGTTGTAAACTTTGGGATGAATTCAGACTTATCAACTGTCTTCGTTAAAACGTA-TGGGTCACTATAAAATGTTTAtgaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccaactctgtattgtacagaagtccccatactggtcagattgataactcgcataacaacaaacacgacagtacaagaataaacaacatgtacatgtcgtttcaaagacaatttcaacccatcattaaaattgtgttttcaataagcttacaactaggttgcacgtttgtgtgtagtcttcgtgctcggtcatacgcttttgttttaaagaagcttatgttaaatgcctgtttaacaccttcatgataagtggaattcagtcagagtacaagcgatttcaactatacacacagtgtgatcttgtcgacctatttactggctcatattaagagacctttacggtgccgcgaagcatagcataca
gi|15 : TTAATAAGTGATATATTTCACCAAATTGTACT-----ACTTTCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTTTATGTTGGG-CA--AGTGGATT-G-GGCGTTGT--TGGGATA-TC--TATAAGAA-----TGCTTACCTACTAAATC-G--A-TTTTTA-AAAGAGGG---TTAG
gi|3 : AGTAA-ATATTACACTGAATTGCA--------------------------------TAGATTTTAGCCAAAAGTTTCTCTATGTTGGG-CA--AGTCGATT-G-GGCATTGT--TGGGATT-AT---AAAAAAA-----TGCTTACCTACCAAACC-G--ATTTTTT--AAAGAGGG---TCGGGTTTTGATAAACAATGTGTTAT-T-ATTAATTGTTCTGGTCGAGTCGTATTGTAAAGTAATCAAGTTCGATGCCGTAATCACTTTTT---CGGCAGAATATTGAATTATTCTCTGATTGA-ACA-AGTTATTTGTAATAACAAGGGTGACTTTTAGAGA-GAAATAAAGG--TTTAAAATTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGAATTCACAACCCTATTCAATAAAACGTA-ATGGTCACTATAAAATGTATATTTCACATTAAAACCATA----TA-----TAC--TTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTCTTTCTCTTTATATTA-TTTTCTTTTATAGAAAAaccgggacggcagcatgctgcctagccgagacgggtttggataaacaatgtgttatctattaattgtagtcgagttgtgtttatagtggtcaagtttgatgccgtagtcaccttttcggcagaatattgaactactctctgattgaacaagttatttg
gi|8 : ACTGAATTGCACTGAATTACTGTCCAAACCATGCTGATGAT-ATACATTTTAACCAACAGTTGCTGTATGTTGGG-CA--AATCGATT-G-GACATTGT--TGGGATT-TT--AAAAAAA------TGCTAACCTAAGATACC-G--A-TTTTTT-AAAGAGGG---TTGGGTTTGAATAAACAATGTGCTAT-T-GTTTATTATTCTGGTCAATTTGTGTTGTAAAGTTATCAAGTTCGATGCTGTAGTTAC--TTTTTTCAGCAGAATATTGAATTATTCTCTGATTAA-ACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGGTGAAAAAAAAGGTTTTAAAACTGGTACATAATATCAATGAGTTTGTTGTAAACTTTGGAATGAATTCAGACTTCACAACTATCTTCAGTAAAACGTAGGGTGTCACTATAAAATGTATATTTTACATTAAAACCTTA----TA-----TAC--CTACCATAAAGTCCCAAAGATAGTTGTTTACACGATT-TAA-ATCTTCTTTTTCTCTTTAGATTG-TTTTCTTTTATGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccaactctgtattgtacggaagtcccataatggtcagattgataactcgcataacaacaaacacgatagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagtcttcgtgctcggccattcttttttattttaaagaagcttatgttaaatgcctgtttaacaccttcatgacaagtggaattcagttagggtacaagggatttcaactatacacacagtgtgtgattttgtcgacctatttactggctcatattacgtgaccattacggtgccgcgaagcatagtatacaaaaacgttcttgacttccgaaccatttttttttt
gi|26 : ATGCACATGGTTGTACATTTTAGCCAATAGTGGCTCTGTATTGGA-TA--CGTGGGTT-ATAACA--GG--TGAAGTTATTGCAATAAAAA-----CGTTTTCCTACC-GACATG--A-TTTTT---AAGAGGA---ACCGGTAAGCGCAAACAA
gi|24 : tgGATGTT-A---ACTTTAGCCAA-AATTGCTTT-TTTTGGATCAGCAGTTTATG-A-GAGGTTGGGGTGGAGCA-AT--AAAAAAAAGTATTTGCTTACCTACTTAATA-CTCA-TTTTTTCAAAGAGGG---TTGGGTTTGGGTAAAT--TGT-TTAT-T-A------ATTCTG
gi|15 : CGGGTTTGGATAAACAATGTGTTATCT-ATT--A-ATTGTAGTCGAGTTGTGTT-TATAGTGGTCAAGTTTGATGCCGTAGTCACCTTTT---CGGCAGAATATTGAACTACTCTCTGATTGA-ACA-AGTTATTTGcattaatcaaat
gi|27 : ttaataagtgatatatttcaccaaattgtactactttccaaaccatgctgatgatatacattttagccaacagttgctttatgttgggcaagtggattgggcgttgttgggatatctataagaatgcttacctactaaatcgatttttaaaagagggttagaccgggacggcagcatgctgcctagccgagaTGTAAT-TCATTT----TTCTGGTAGAGTTGTGTTTTAAACTAATCAAGTTTGATGCTGTAGTCATTGTTT---CTGCAGAATATTGAACTATTCTCTGACTGA-A
gi|18 : TTTATTATTCTGGTCGAGTCGTGTT-----GTAA---AGT--AAT--------CAA--GTT---CG-----ATGCCG---TAGTCACTTTTTAACACGTAGTTATTTGTAAT-------------TTTTGAGA-AAAAA----GGTTTTAAAACGGGTACATAATATCGA-GAGTTTGTTGTAAACTTTGGAATGTATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGG-TCACTATAAAATGTATATTTTACATTAAAACCTTA----TA-----TTC--CTACCATAATTTCCCAAAAATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTT
gi|16 : TCAAGTTTGATGACGTAGTCACCTTTT---CGGCAGTACTTTGAATTATTCTTTGGCTGA-ATA-AGTTATTTGTAATAGCAAGCAGGACTTTTTT-----TAAAAAAAAGTTTTAAAACTTGTACATGCTTTCGACTCACTTGATTTAAACTTGGGAAAGAATTCTGGCTT---AACCCT------TAAAACG-AGGGTGTCACTATAAAATATATATTTTACATTAAAACCGTA----TAATACGTAC--CTACCATAAGTTCCCAAA-ATATTTGTTTACACGGTTATTATATTTT-TTTTTCTTTTTATATTG-TTTTCTTTTAGGAA
gi|5 : ggA-AGTTATTTGTAATAGCAAGAGTGACTTTTTGAGA-GAAATAATGG--TTTAAAATTGGTACATAATATCCACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCAAAACCCTCTTCGGTAAAACGTATGGG-TCACTATAAAATGTATATTTTACATTAAAACCATA----TA-----TAC--CTACCATCAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTATCTTTCTCTTTATATTGTTTTTCTTTTATGGAAAA
gi|28 : taggatatatattactttttgaagaatttgataagtgatatattacactgaattgcatacattttagtcaaaagttactctatgttggacaagtcgattgggcgttgttgggattataaaaaaaaatgcttacctaccaaatcgattttttaaagagagggttttgataaacaatgtgttattatttattattctggtcaagtcgtgttgtaaagtaatcaagttcgCATAATACCGACGAGTTTGTTGTAAACTTTtgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagacccaactctgtattgtacggaagtacccataatgctcagattgataactcgcataacaacaaacacgacagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagttttcgtgctcggccattcgcttttgttttaaagaagcttatattaaatgcctgtttaacaccttcatgacaagtggtcagttagagtacaagtgatttcaactatacacacagtgtgtgttcttgtcgacctatttactggctcatattacgtgacctttacggtgccgcgaaacatagtatacaaaaatgttcttgacttccgaaccgttttttt
gi|2 : TCGGTAAAACGTAGGGGGTCACTATGCAATGTATATTTTACATTAAAACCATA----AA-----TAC--CTACCATATGTTTCCAAAGATAGTTGTTTACATGATT-TTA-ATCTTCTTTTTCTCTTTAAAATG-TTTTCTTTTATGAAAAAatttgttgttaacgtaggggtcactacaaaatttattattct
gi|29 : aggatatatattactcttcgaagaatttaataagtggtatattacactgaattgcactactgcccaaaccatgttgatgatatacattttagccaacagttgctctatgtttggcaagtcgattggatgttgttgggattttaaaaaaaatgcttacctaccataccgattttttggtttggttttcgggtttggttaaataatgtgttattatttattattctggtcgagtcgtgttgtaaaataatcaagtttgatgccatagtcactttttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagggtgactttttgaaagaaaaaaaaggttttaaaactggtacattatatcgacgagttattataCCCAAGATAGTTGTTTACATAGTT-TTA-ATCTTATTTTTCTTTTTATATTG-TTTTCTTTGATGGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccgacactgtattgcacagcagtccccataatggtcagattgataactcgcataacaacaaacacgacagtacaaaaataaacaacatgtacatgtcgtttcaaagacaatttcgatctttcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcgtgctcggccattcgcttttgttttaaagaatcttatgttaaatgcctgtggtcagccttcttgacaagtggaattcatttagagtacaaccaatttcaacgatacacacagtgtgtgaatcatgtcgacctatttactggctcatattaactgacctttatggtgccgcgaagcatagcatacaaaaaagttcttgacttccgtacctttttttgc
gi|4 : aCCCAA-CT-CTGTATTGTACAGAAGTCCCCATACTGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCAACCCAT--CATTAAAATTGTGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGTCATACGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGATAAGTGGAATTCAGTCAG-----AGTACAAGCGATTTCAACTATACACAC--AGTG------TGATCTT-GTCGACCT-------ATT-------------T-------------ACTGGCTCATATTAAGAGACCTTTACGGTGCCGCGAAGCATAGCATACA
gi|3 : gaatttaataagtgatacattacactgaattgcactactgcccaaaccatgctgatgatatacattttagccaacaattgctctttgttgggcaagtcaattaggcgttgttgggattataaataaatgcttacctaccaaaccgattttttaaagagggtcgggttttgataaacaatgtgttattatttattgttctggtcgaattgtgttgtaaagtaaccaagtttgatgccgtagtcactttttcggcagaatattgaattattctctgactgaacaagtaatttgaaattgcaagggtgacattttgagagaaaaaaaggatttaaaacttgtacattatatcaacgagtttgttgtaaactttgggatgaattcagacttcacaacccttttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccataatattatacaactaccataagtttttctctttctctttatattgttttcttttatgaaaaatgaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaCCCAA-CT-CTGTATTGTACGGAAGTCCC-ATAATGGTCAGATTGATAACTCGCATAACAACAAACACGATAGTACAAGAATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTGTGTTTTCAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGCCATTCTTTTTTATTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAG-----GGTACAAGGGATTTCAACTATACACAC--AGTG------TG----T-GATTTTGTCGACCT-ATT-------------T-------------ACTGGCTCATATTACGTGACCATTACGGTGCCGCGAAGCATAGTATACAAAAACGTTCTTGACTTCCGAACCATTTTTTTT
gi|2 : agtaaatattacactgaattgcatagattttagccaaaagtttctctatgttgggcaagtcgattgggcattgttgggattataaaaaaatgcttacctaccaaaccgattttttaaagagggtcgggttttgataaacaatgtgttattattaattgttctggtcgagtcgtattgtaaagtaatcaagttcgatgccgtaatcactttttcggcagaatattgaattattctctgattgaacaagttatttgtaataacaagggtgacttttagagagaaataaaggtttaaaattggtacataatatcgacgagtttgttgtaaactttgggatgaattcagaattcacaaccctattcaataaaacgtaatggtcactataaaatgtatatttcacattaaaaccatatatacttaccataagttcccaaagatagttgtttacacgattttaatcttctctttctctttatattattttcttttatagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaCCCGA-CA-CTGTATTGCACAGCAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAAAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCTTT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAATCTTATGTTAAATGCCTGTGGTCA--GCCTTCTTGACAAGTGGAATTCATTTAG-----AGTACAACCAATTTCAACGATACACAC--AGTG------TG----T-GAATCATGTCGACCTATT-------------T-------------ACTGGCTCATATTAACTGACCTTTATGGTGCCGCGAAGCATAGCATACAAAAAAGTTCTTGACTTCCGTACC-TTTTTTTtt
gi|5 : aggatatatattactcttcgaagaatttaataagtggtatattacactgaattgcactactgcccaaaccatgttgatgatatacattttagccaacagttgctctatgtttggcaagtcgattggatgttgttgggattttaaaaaaaatgcttacctaccataccgattttttggtttggttttcgggtttggttaaataatgtgttattatttattattctggtcgagtcgtgttgtaaaataatcaagtttgatgccatagtcactttttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagggtgactttttgaaagaaaaaaaaggttttaaaactggtacattatatcgacgagttattatatcggtaaaacgtagggggtcactatgcaatgtatattttacattaaaaccataaatacctaccatatgtttccaaagatagttgtttacatgattttaatcttctttttctctttaaaatgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaCCCAA-CT-CTGTATTGTACGGAAGTACCCATAATGCTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTGTGTTTTCAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTTTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATATTAAATGCCTGT--TTAACACCTTCATGACAAGTGG---TCAGTTAG-----AGTACAAGTGATTTCAACTATACACAC--AGTG------TG----T-GTTCTTGTCGACCT-ATT-------------T-------------ACTGGCTCATATTACGTGACCTTTACGGTGCCGCGAAACATAGTATACAAAAATGTTCTTGACTTCCGAACC-GTTTTTTTgc
gi|10 : taggatatatattactttttgaagaatttgataagtgatatattacactgaattgcatacattttagtcaaaagttactctatgttggacaagtcgattgggcgttgttgggattataaaaaaaaatgcttacctaccaaatcgattttttaaagagagggttttgataaacaatgtgttattatttattattctggtcaagtcgtgttgtaaagtaatcaagttcgaagttatttgtaatagcaagagtgactttttgagagaaataatggtttaaaattggtacataatatccacgagtttgttgtaaactttgggatgaattcagacttcaaaaccctcttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccatatatacctaccatcagttcccaaagatagttgtttacacgattttaatcttatctttctctttatattgtttttcttttatggaaaatgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagaCCCAA-CT-CTGTATTGTACGGAAGACCCCATAATGG-------------TCGCATAACAACAAACACGACAGTAGAAGAATAAACAACATGTATATGTCGTTTCAAAGACAATTTCGAGCCAT--CATTATAATTATGTTTTCAATAAGCTTATAACTAGGT--TGCACGTTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAA---------------CCTTCATGGCAAGTGGAATTCAATTAG-----AATGCAAGCGATTTCAACGATACACACGTAGTGAAATCTTG----TCG--------------ACCTATT---------T-------------ACTAGCTCATATTAAGTGACCTTAACGATGCCGCGAAGCATAGCATACAAAAAAGTTCTTGACTTCCGTA-C-TTTTTTTTGC
gi|13 : CCCAATCA-----ATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTATCATTACAACAAACACGACAGTACAAGAATAAACAACATGTACAAGTTATTCCAAAGACAATTTCGATCCAT--CATTAAAAT--TGTTTTCAATAAGCTTATAACTAGGC--TACACGTT--TGTCCCGTCTTTGTGCTCGGCCATTCAACTTTGTTTCAAAGAAGCTTATGTTAAATACCTGT--TTAACGCCTTCATGACATGTGGAATTTAATAAG-----AGTACAAGCGATTTCAACGATACACAC--AGTG------CG----T-G--------------ATCTTATCGACCTATTT-------------ACTGACTCATAATAAGTGACCTTTATGGTGCCG
gi|11 : aCCAA-CT-CTGTATTGTACGGATGTCTCCAAAATGGTCAGATTGATAACTCGCATGACATCAAACACGACAGCACAAGAATAAACAACATGTACCTGCCGTTTCAAAGTGAATTTCGATCCATGTCATTGAAATGGTATTTTCAATAAGGTCAGAACTAGGT--TGCACGTTTGTGTGCAGTTTTCATGCTCGGCCATTCACTTTTGTTGAAAAGAAGCTTACGTTAAATGCCTGT--TTAACACATTCATTACA-----AATGCAATT------CAGTA-AAGAGATTTCATCGATACACAA--TATG------TG----C-G--------------ATC-------------TTATCGGCCTATTAAATGACTTCTATTAAATTACCTTTACGGTGCCGCGAAGCATAGCAGACAAAAAAGCTTTTt
gi|12 : CCAA-AATCTGTATTGTACAGAAGTCCCCATAAAGGTCAGATTGATAACTCGCATTACAGCAAACACAACAATACAAGAATAAAAAACATGTACAAGTCATTTCAAAGATTATTTTGATCCAT--CATTCAAATTATGTTTTCAATAAGCTTACAACTA
gi|14 : taaatatatacctgtaaataaacaatacttaagtctttttactgataaaagtttcgatagatgattaaaatggcaaatgcagacttacttatgttaccttgattgagaaaaaaatgattacaacagatcatcctcgaagaattattgtgtagatccagtactaagcttatgcagacaaagtctattgttcaaggacacaacagaCAAATACGACAGTACAAGGATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGTTCCAT--AATTAAAATTGTGTTTTTAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAACTTATGTTAAATGCCTGT--TAAACACCTTCATGACAAGTGGAATTCAGTTA-----CAATACATGTGATTTCAACTATACACAC--AGTT------AG----T-G--------------ATC-------------TTGTCGGCCTATTTACTGGCTCATATTACATGACCTTTATGGTGCCGCGAAGCATAGTATACAAAAATGTTCTTGACTTCCGAACC-TTTTTTTTGC
gi|21 : AAACATGACAGTACAAGAATAAACAACATGCACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCATGTTTGTGTATAGTATTCGTGCTCGGCCATTTGCTTTTG-----AAGAAGCTTATGTTGAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAATTAG-----AGTACAAGCGATTTCA
gi|4 : AAACGACATGTACATGTTGTTT
gi|2 : gaatttaataagtgatacattacactgaattgcactactgcccaaaccatgctgatgatatacattttagccaacaattgctctttgttgggcaagtcaattaggcgttgttgggattataaataaatgcttacctaccaaaccgattttttaaagagggtcgggttttgataaacaatgtgttattatttattgttctggtcgaattgtgttgtaaagtaaccaagtttgatgccgtagtcactttttcggcagaatattgaattattctctgactgaacaagtaatttgaaattgcaagggtgacattttgagagaaaaaaaggatttaaaacttgtacattatatcaacgagtttgttgtaaactttgggatgaattcagacttcacaacccttttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccataatattatacaactaccataagtttttctctttctctttatattgttttcttttatgaaaaatgaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccaactctgtattgtacagaagtccccatactggtcagattgataactcgcataacaacaaacacgacagtacaagaatAAACGACATGTACATGTTGTTTcaaagacaatttcaacccatcattaaaattgtgttttcaataagcttacaactaggttgcacgtttgtgtgtagtcttcgtgctcggtcatacgcttttgttttaaagaagcttatgttaaatgcctgtttaacaccttcatgataagtggaattcagtcagagtacaagcgatttcaactatacacacagtgtgatcttgtcgacctatttactggctcatattaagagacctttacggtgccgcgaagcatagcataca
gi|20 : aggatatatattactcttcgaagaatttaataagtggtatattacactgaattgcactactgcccaaaccatgttgatgatatacattttagccaacagttgctctatgtttggcaagtcgattggatgttgttgggattttaaaaaaaatgcttacctaccataccgattttttggtttggttttcgggtttggttaaataatgtgttattatttattattctggtcgagtcgtgttgtaaaataatcaagtttgatgccatagtcactttttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagggtgactttttgaaagaaaaaaaaggttttaaaactggtacattatatcgacgagttattatatcggtaaaacgtagggggtcactatgcaatgtatattttacattaaaaccataaatacctaccatatgtttccaaagatagttgtttacatgattttaatcttctttttctctttaaaatgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccgacactgtattgcacagcagtccccataatggtcagattgataactcgcataacaacaaacacgacagtacaaaaatAACATGTACAAGTCGTATTAAAGACCATTTCGATCTAT--CATTAAAATTATGTTTTTAATAAGCTTACCACTAGGT--TGCACGCTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTT-----------------GATGCCTGT--TTAACACATTCTTGACAGGTGAAATTCAATTAG-----AATACAAGCGATTTCAACTATACACAC--ATTG------TG----T-G--------------ATC-------------T-------------caaagacaatttcgatctttcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcgtgctcggccattcgcttttgttttaaagaatcttatgttaaatgcctgtggtcagccttcttgacaagtggaattcatttagagtacaaccaatttcaacgatacacacagtgtgtgaatcatgtcgacctatttactggctcatattaactgacctttatggtgccgcgaagcatagcatacaaaaaagttcttgacttccgtacctttttttgc
gi|19 : GTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAAAAAGCTTACAACTAGGT--TGCATGTTTGTGTATGGTATTCGTGCTCGGCCATTCCCTTTTGTTTTAAAGAAGCTTTTGATAAATGCCTGT--TTAACACATTCATGACAAGCGGAATTCAATT--AGT---GTACAAGCGATTTCAACGATACACGC--ATTG------TG----T-G--------------ATCTTGTCAACCTATTT-------------ACTGGCTGATATTAAGTGAAATTTACGGTGCCGGGAAACATAGCATACAAAAAAATTCTTAtagcatacaaacaaaatcttaactcttttttttgcta
gi|25 : CCAT--CCTCAACATTATATTTT-----ACC---CCATTCGGTCTTCTACGTTTGTGTGCAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAA-----------AAATGCCACT--TAAACACCTTCATGACAAGTGGAATTCAATAAGAGTACAG-----GCGATTTCAACCATACAC
gi|22 : GT--TTAACACCTTCACGACAAGTGGAATTCAGTTGGAGTACA-----AGTGATTTCAACTATACACAC--TGTA------TG----T-G--------------ATC-------------TTGTTGACCTGTTAACTGGTTCATATGAAGTGACCTTTACGGTGCCGCGAAGCATAGTATACAAAAACGTTCTTGACTTCCGTACC-TTTTTTTTGCt
gi|20 : TAGCATACAAACAAAATCTTAACT-------C-TTTTTTTTGC
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ATGAAATTTATATTTGCAGAAGACATCAAATTGCCAGAGCTTCTACCAGTAGGTTGTCTAGCACACGGACTCGTGTTTTCACACTACATTGGTTTTCTGACATACGTTTTGCCAGGTAAATTAGAATTAAACACTTTTTGGACAGCTTTCATAAAAAGATAAAAAAAAAAAATATTCTTATTTATTTTACATTGATTGTGAAACATGTTCTTACAGATTAGACAAATCATGCTTGAAGTCTTCTTGGTTAGAACCAATACTAAGCATTTTGTGGATAAAGGACATCACACAAAGTCGTGGC
Unaligned ( gi|23 ): TTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|30 ): AGCATATGCGGATAAAGTCTATTGTCAAAGGATACCACAGACCAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 111111111111 11111 11111 1 11 1 11111 33333333333333333333333333333333333333333333
lowQualScore : 555555555555 0 3 1 3 44 11111 44 3 1 88 11111 3 3 6 44 555 0 3 3 0 3 3 3 0 1 3 0 77 0 7 3 8888 00000 55 3 3 0 3 33 44 1 33 77777 1 44 999999 7777 3 55555555555555555555555555555555555555555555 1 1 5
lowQualScore : ............ . . . . .. ..... .. . . .. ..... . . . .. ... . . . . . . . . . . . .. . . . .... ..... .. . . . . .. .. . .. ..... . .. ...... .... . ............................................ . . .
lowQualScore : 333333333333 4 3 8 3 66 77777 66 3 0 88 77777 3 3 7 66 888 4 1 1 4 3 3 3 5 4 6 3 11 5 1 3 5555 00000 55 6 6 5 6 99 22 0 99 11111 0 66 666666 1111 3 44444444444444444444444444444444444444444444 0 0 7
consensus : AGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-----GGGCGTTGT--TGGGAT-TNT-AAAAAAAA-----TGCTTACCTACC-AA-ACCGA-TTTTT--AAAGAGGG---TCGGGTTTGGATAAACAATGTGTTATTATTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGACTGAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGA-GAAAAAAAGGGTTTTAAAACTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTTTCTTTTATGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACTCTGTATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTNTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAGAGTACA-----AGCGATTTCAACNATACACAC--AGTG------TG----T-G--------------ATC-------------T-------------ACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAANGTTCTTGACTTCCGNACC-TTTTTTTTGC
Reference ( family-806 ) : AGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-----GGGCGTTGT--TGGGAT-TNT-AAAAAAAA-----TGCTTACCTACC-AA-ACCGA-TTTTT--AAAGAGGG---TCGGGTTTGGATAAACAATGTGTTATTATTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGACTGAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGA-GAAAAAAAGGGTTTTAAAACTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTTTCTTTTATGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACTCTGTATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTNTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAGAGTACA-----AGCGATTTCAACNATACACAC--AGTG------TG----T-G--------------ATC-------------T-------------ACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAANGTTCTTGACTTCCGNACC-TTTTTTTTGC
gi|1 : AGGATATATATTACCCTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAATCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-----GGACATTGT--TGGGAT-TTT-AAAAAAAA-----TGCTTACCTACC-AA-ACAGA-TTTTT--AAAGAGGG---TCAGGTTTGGATAAACAATGTGTTATTATTTAAT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGACACTTT---CGGCAGAATATTG-AATTATTCTCTGATTAAACA-AGTTATTTGTAATAGCAAGTGTGACTTTTTGAGA-AAAAAAAAAGGTTTTAAAACTGGTACATTATATCGACGAGTTTGTTGTAAACTTTGGAATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTCTAAGATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGACAGTTGTTTACACGATT-TTA-ATTTTCTTTTTCTCTTTAAATTG-TTTTCTTTTATGAAAAA
gi|1 : CCCAACACTGTATTGTATGGAAGTCCCCATAATGACCAGATTGATAACTCACATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTCTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTATAGTATTCATGCTCGGCCATTCGCTTTTGTTTTAAAGAAACCTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTCGAATTCAATTAGAGTGCAGTGCAAGCGATTTCAACGATACACAC--AGTG------TG----T-G--------------ATC-------------T-------------ACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAAAGTTCTTAACTTCCGTACC-TTTTTTTTGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccaacactgtattgtatggaagtccccataatgaccagattgataactcacataacaacaaacacgacagtacaagaataaacaacatgtacatgtcgtctcaaagacaatttcgatccatcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcatgctcggccattcgcttttgttttaaagaaacctatgttaaatgcctgtttaacaccttcatgacaagtcgaattcaattagagtgcagtgcaagcgatttcaacgatacacacagtgtgtgatctactggctcatattaagtgacctttacggtgccgcgaagcatagcatacaaaaaagttcttaacttccgtaccttttttttgc
gi|10 : aggatatatattacccttcgaagaatttaataagtgatatattacactgaattgcactactgcccaaatcatgctgatgatatacattttagccaacagttgctctatgttgggcaagtcgattggacattgttgggattttaaaaaaaatgcttacctaccaaacagatttttaaagagggtcaggtttggataaacaatgtgttattatttaatattctggtcgagtcgtgttgtaaagtaatcaagttcgatgccgtagacactttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagtgtgactttttgagaaaaaaaaaaggttttaaaactggtacattatatcgacgagtttgttgtaaactttggaatgaattcagacttcacaaccctcttcggtaaaacgtagggggtcactctaagatgtatattttacattaaaaccatatatacctaccataagttcccaaagacagttgtttacacgattttaattttctttttctctttaaattgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCAACTCTGTATTGTACGGAAGACCCCATAATGGTC-------------GCATAACAACAAACACGACAGTAGAAGAATAAACAACATGTATATGTCGTTTCAAAGACAATTTCGAGCCAT--CATTATAATTATGTTTTCAATAAGCTTATAACTAGGT--TGCACGTTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAA---------------CCTTCATGGCAAGTGGAATTCAATTAGAATGCA-----AGCGATTTCAACGATACACACGTAGTGAAATCTTG----TCG--------------ACCTATT---------T-------------ACTAGCTCATATTAAGTGACCTTAACGATGCCGCGAAGCATAGCATACAAAAAAGTTCTTGACTTCCGTA-C-TTTTTTTTGC
gi|11 : CCAACTCTGTATTGTACGGATGTCTCCAAAATGGTCAGATTGATAACTCGCATGACATCAAACACGACAGCACAAGAATAAACAACATGTACCTGCCGTTTCAAAGTGAATTTCGATCCATGTCATTGAAATGGTATTTTCAATAAGGTCAGAACTAGGT--TGCACGTTTGTGTGCAGTTTTCATGCTCGGCCATTCACTTTTGTTGAAAAGAAGCTTACGTTAAATGCCTGT--TTAACACATTCATTACAAATGCAATTCAG-TA------A-----AGAGATTTCATCGATACACAA--TATG------TG----C-G--------------ATC-------------TTATCGGCCTATTAAATGACTTCTATTAAATTACCTTTACGGTGCCGCGAAGCATAGCAGACAAAAAAGCTTTT
gi|12 : CCAAAATCTGTATTGTACAGAAGTCCCCATAAAGGTCAGATTGATAACTCGCATTACAGCAAACACAACAATACAAGAATAAAAAACATGTACAAGTCATTTCAAAGATTATTTTGATCCAT--CATTCAAATTATGTTTTCAATAAGCTTACAACTA
gi|13 : taaatatatacctgtaaataaacaatacttaagtctttttactgataaaagtttcgatagatgattaaaatggcaaatgcagacttacttatgttaccttgattgagaaaaaaatgattacaacagatcatcctcgaagaattattgtgtagatccagtactaagcttatgcagacaaagtctattgttcaaggacacaacagaATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTATCATTACAACAAACACGACAGTACAAGAATAAACAACATGTACAAGTTATTCCAAAGACAATTTCGATCCAT--CATTAAAAT--TGTTTTCAATAAGCTTATAACTAGGC--TACACGTT--TGTCCCGTCTTTGTGCTCGGCCATTCAACTTTGTTTCAAAGAAGCTTATGTTAAATACCTGT--TTAACGCCTTCATGACATGTGGAATTTAATAAGAGTACA-----AGCGATTTCAACGATACACAC--AGTG------CG----T-G--------------ATCTTATCGACCTATTT-------------ACTGACTCATAATAAGTGACCTTTATGGTGCCG
gi|14 : acccaatcaCAAATACGACAGTACAAGGATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGTTCCAT--AATTAAAATTGTGTTTTTAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAACTTATGTTAAATGCCTGT--TAAACACCTTCATGACAAGTGGAATTCAGTTACAATACA-----TGTGATTTCAACTATACACAC--AGTT------AG----T-G--------------ATC-------------TTGTCGGCCTATTTACTGGCTCATATTACATGACCTTTATGGTGCCGCGAAGCATAGTATACAAAAATGTTCTTGACTTCCGAACC-TTTTTTTTGCt
gi|15 : TTAATAAGTGATATATTTCACCAAATTGTACT-----ACTTTCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTTTATGTTGGG-CA--AGTGGATT-----GGGCGTTGT--TGGGATATCT--ATAAGAA-----TGCTTACCTACT-AA-ATCGA-TTTTTA-AAAGAGGG---T
gi|15 : CGGGTTTGGATAAACAATGTGTTATC---TATT-AATTGTAGTCGAGTTGTGTT-TATAGTGGTCAAGTTTGATGCCGTAGTCACCTTTT-CGGCAGAATATTG-AACTACTCTCTGATTGAACA-AGTTATTTGtagaccgggacggcagcatgctgcctagccgagacgggtttggataaacaatgtgttatctattaattgtagtcgagttgtgtttatagtggtcaagtttgatgccgtagtcaccttttcggcagaatattgaactactctctgattgaacaagttatttg
gi|16 : ttaataagtgatatatttcaccaaattgtactactttccaaaccatgctgatgatatacattttagccaacagttgctttatgttgggcaagtggattgggcgttgttgggatatctataagaatgcttacctactaaatcgatttttaaaagagggttagaccgggacggcagcatgctgcctagccgagaTCAAGTTTGATGACGTAGTCACCTTTT-CGGCAGTACTTTG-AATTATTCTTTGGCTGAATA-AGTTATTTGTAATAGCAAGCAGGACTTTTT-----TTAAAAAAAAGTTTTAAAACTTGTACATGCTTTCGACTCACTTGATTTAAACTTGGGAAAGAATTCTGGCTT---AACCCT------TAAAACG-AGGGTGTCACTATAAAATATA-TATTTTACATTAAAACCGTA----TAATACGTAC--CTACCATAAGTTCCCAAA-ATATTTGTTTACACGGTTATTATAT-TTTTTTTTCTTTTTATATTG-TTTTCTTTTA-GGAA
gi|18 : ggTTTATT-A-TTCTGGTCGAGTCGTGTT-----GTAA---------A----GTAATCAAGTT---CG-----ATGCCGTAGTCACTTTTTAAC---ACGTAGTTATTTGTAAT-------------TTTTGAGA-AAAAA----GGTTTTAAAACGGGTACATAATATCGA-GAGTTTGTTGTAAACTTTGGAATGTATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGG-TCACTATAAAATGTA-TATTTTACATTAAAACCTTA----TA-----TTC--CTACCATAATTTCCCAAAAATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTT
gi|19 : GTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAAAAAGCTTACAACTAGGT--TGCATGTTTGTGTATGGTATTCGTGCTCGGCCATTCCCTTTTGTTTTAAAGAAGCTTTTGATAAATGCCTGT--TTAACACATTCATGACAAGCGGAATTCAATTAGTGTACA-----AGCGATTTCAACGATACACGC--ATTG------TG----T-G--------------ATCTTGTCAACCTATTT-------------ACTGGCTGATATTAAGTGAAATTTACGGTGCCGGGAAACATAGCATACAAAAAAATTCTT
gi|2 : AGGATATATATTACTCTTCGAAGAATTTAATAAGTGGTATATTACACTGAATTGCACT-----ACTGCCCAAACCATGTTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTTGG-CA--AGTCGATT-----GGATGTTGT--TGGGAT-TTT-AAAAAAAA-----TGCTTACCTACC-AT-ACCGA-TTTTT--TGGTTTGGTTTTCGGGTTTGGTTAAATAATGTGTTATTATTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAATAATCAAGTTTGATGCCATAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGATTAAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAAA-GAAAAAAAAGGTTTTAAAACTGGTACATTATATCGACGAGTTa
gi|2 : TCGGTAAAACGTAGGGGGTCACTATGCAATGTA-TATTTTACATTAAAACCATA----AA-----TAC--CTACCATATGTTTCCAAAGATAGTTGTTTACATGATT-TTA-ATCTTCTTTTTCTCTTTAAAATG-TTTTCTTTTATGAAAAAattatatcggtaaaacgtagggggtcactatgcaatgtatattttacattaaaaccataaatacctaccatatgtttccaaagatagttgtttacatgattttaatcttctttttctctttaaaatgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccgacactgtattgcacagcagtccccataatggtcagattgataactcgcataacaacaaacacgacagtacaaaaataaacaacatgtacatgtcgtttcaaagacaatttcgatctttcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcgtgctcggccattcgcttttgttttaaagaatcttatgttaaatgcctgtggtcagccttcttgacaagtggaattcatttagagtacaaccaatttcaacgatacacacagtgtgtgaatcatgtcgacctatttactggctcatattaactgacctttatggtgccgcgaagcatagcatacaaaaaagttcttgacttccgtacctttttttgc
gi|2 : aggatatatattactcttcgaagaatttaataagtggtatattacactgaattgcactactgcccaaaccatgttgatgatatacattttagccaacagttgctctatgtttggcaagtcgattggatgttgttgggattttaaaaaaaatgcttacctaccataccgattttttggtttggttttcgggtttggttaaataatgtgttattatttattattctggtcgagtcgtgttgtaaaataatcaagtttgatgccatagtcactttttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagggtgactttttgaaagaaaaaaaaggttttaaaactggtacattatatcgacgagttattataCCCGACACTGTATTGCACAGCAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAAAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCTTT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAATCTTATGTTAAATGCCTGTGGTCA--GCCTTCTTGACAAGTGGAATTCATTTAGAGTACA-----ACCAATTTCAACGATACACAC--AGTG------TG----T-GAATCATGTCGACCTATT-------------T-------------ACTGGCTCATATTAACTGACCTTTATGGTGCCGCGAAGCATAGCATACAAAAAAGTTCTTGACTTCCGTACC-TTTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccgacactgtattgcacagcagtccccataatggtcagattgataactcgcataacaacaaacacgacagtacaaaaataaacaacatgtacatgtcgtttcaaagacaatttcgatctttcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcgtgctcggccattcgcttttgttttaaagaatcttatgttaaatgcctgtggtcagccttcttgacaagtggaattcatttagagtacaaccaatttcaacgatacacacagtgtgtgaatcatgtcgacctatttactggctcatattaactgacctttatggtgccgcgaagcatagcatacaaaaaagttcttgacttccgtacctttttttgc
gi|20 : aggatatatattactcttcgaagaatttaataagtggtatattacactgaattgcactactgcccaaaccatgttgatgatatacattttagccaacagttgctctatgtttggcaagtcgattggatgttgttgggattttaaaaaaaatgcttacctaccataccgattttttggtttggttttcgggtttggttaaataatgtgttattatttattattctggtcgagtcgtgttgtaaaataatcaagtttgatgccatagtcactttttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagggtgactttttgaaagaaaaaaaaggttttaaaactggtacattatatcgacgagttattatatcggtaaaacgtagggggtcactatgcaatgtatattttacattaaaaccataaatacctaccatatgtttccaaagatagttgtttacatgattttaatcttctttttctctttaaaatgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaAACATGTACAAGTCGTATTAAAGACCATTTCGATCTAT--CATTAAAATTATGTTTTTAATAAGCTTACCACTAGGT--TGCACGCTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTT-----------------GATGCCTGT--TTAACACATTCTTGACAGGTGAAATTCAATTAGAATACA-----AGCGATTTCAACTATACACAC--ATTG------TG----T-G--------------ATC-------------T-------------gc
gi|21 : AAACATGACAGTACAAGAATAAACAACATGCACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCATGTTTGTGTATAGTATTCGTGCTCGGCCATTTGCTTTTG-----AAGAAGCTTATGTTGAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAATTAGAGTACA-----AGCGATTTCAtagcatacaaacaaaatcttaactcttttttttgcta
gi|22 : GT--TTAACACCTTCACGACAAGTGGAATTCAGTTGGAGTACA-----AGTGATTTCAACTATACACAC--TGTA------TG----T-G--------------ATC-------------TTGTTGACCTGTTAACTGGTTCATATGAAGTGACCTTTACGGTGCCGCGAAGCATAGTATACAAAAACGTTCTTGACTTCCGTACC-TTTTTTTTGC
gi|24 : GATGTT-A---ACTTTAGCCAA-AATTGCTTT-TTTTGGATCAGCAGTTTATG-----AGAGGTTGGGGTGGAGC-AAT-AAAAAAAAGTATTTGCTTACCTACTTAATACTCA-TTTTTTCAAAGAGGG---TTGGGTTTGGGTAA----------ATTGTTTATTAA-TTCTG
gi|25 : CCAT--CCTCAACATTATATTTT-----ACC---CCATTCGGTCTTCTACGTTTGTGTGCAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAA-----------AAATGCCACT--TAAACACCTTCATGACAAGTGGAATTCAATAAGAGTACA-----GGCGATTTCAACCATACACcattaatcaaat
gi|26 : ATGCACATGGTTGTACATTTTAGCCAATAGTGGCTCTGTATTGGA-TA--CGTGGGTTATAACAGGTGAAGT--T---AT-TGC-AATAAAAA-----CGTTTTCCTACC-GA-CATGA-TTTTT---AAGAGGA---ACCGGTAAGCGCAAACAAt
gi|27 : tgATTCATT-T-TTCTGGTAGAGTTGTGTTTTAAACTAATCAAGTTTGATGCTGTAGTCATTGTTT-CTGCAGAATATTG-AACTATTCTCTGACTGAA
gi|28 : tgtaCATAATACCGACGAGTTTGTTGTAAACTTT-------ATT---------------TGTT-GTTAA--CGTA-GGGGTCACTACAAAATTTATTATTCT
gi|29 : CCCAAGATAGTTGTTTACATAGTT-TTA-ATCTTATTTTTCTTTTTATATTG-TTTTCTTTGATGGA
gi|3 : aAGTAA-ATATTACACTGAATTGCA--------------------------------TAGATTTTAGCCAAAAGTTTCTCTATGTTGGG-CA--AGTCGATT-----GGGCATTGT--TGGGAT-TAT--AAAAAAA-----TGCTTACCTACC-AA-ACCGATTTTTT--AAAGAGGG---TCGGGTTTTGATAAACAATGTGTTATTATTAATT-G-TTCTGGTCGAGTCGTATTGTAAAGTAATCAAGTTCGATGCCGTAATCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGATTGAACA-AGTTATTTGTAATAACAAGGGTGACTTTTAGAGA-GAAATAAAGG--TTTAAAATTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGAATTCACAACCCTATTCAATAAAACGTA-ATGGTCACTATAAAATGTA-TATTTCACATTAAAACCATA----TA-----TAC--TTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTCTTTCTCTTTATATTA-TTTTCTTTTATAGAAAA
gi|3 : CCCAACTCTGTATTGTACGGAAGTCCC-ATAATGGTCAGATTGATAACTCGCATAACAACAAACACGATAGTACAAGAATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTGTGTTTTCAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGCCATTCTTTTTTATTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAGGGTACA-----AGGGATTTCAACTATACACAC--AGTG------TG----T-GATTTTGTCGACCT-ATT-------------T-------------ACTGGCTCATATTACGTGACCATTACGGTGCCGCGAAGCATAGTATACAAAAACGTTCTTGACTTCCGAACCATTTTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccaactctgtattgtacggaagtcccataatggtcagattgataactcgcataacaacaaacacgatagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagtcttcgtgctcggccattcttttttattttaaagaagcttatgttaaatgcctgtttaacaccttcatgacaagtggaattcagttagggtacaagggatttcaactatacacacagtgtgtgattttgtcgacctatttactggctcatattacgtgaccattacggtgccgcgaagcatagtatacaaaaacgttcttgacttccgaaccatttttttttt
gi|4 : agtaaatattacactgaattgcatagattttagccaaaagtttctctatgttgggcaagtcgattgggcattgttgggattataaaaaaatgcttacctaccaaaccgattttttaaagagggtcgggttttgataaacaatgtgttattattaattgttctggtcgagtcgtattgtaaagtaatcaagttcgatgccgtaatcactttttcggcagaatattgaattattctctgattgaacaagttatttgtaataacaagggtgacttttagagagaaataaaggtttaaaattggtacataatatcgacgagtttgttgtaaactttgggatgaattcagaattcacaaccctattcaataaaacgtaatggtcactataaaatgtatatttcacattaaaaccatatatacttaccataagttcccaaagatagttgtttacacgattttaatcttctctttctctttatattattttcttttatagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaGAATTTAATAAGTGATACATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAATTGCTCTTTGTTGGG-CA--AGTCAATT-----AGGCGTTGT--TGGGAT-TAT--AAATAAA-----TGCTTACCTACC-AA-ACCGATTTTTT--AAAGAGGG---TCGGGTTTTGATAAACAATGTGTTATTATTTATT-G-TTCTGGTCGAATTGTGTTGTAAAGTAACCAAGTTTGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGACTGAACA-AGTAATTTGAAATTGCAAGGGTGACATTTTGAGA-GAAAAAAAGGA-TTTAAAACTTGTACATTATATCAACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTTTTCGGTAAAACGTA-TGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATAATATTA-----TACAACTACCATAAGTT-----------------------TT-TC---TCTT---TCTC--TTTATATTG-TTTTCTTTTATGAAAAAtt
gi|4 : CCCAACTCTGTATTGTACAGAAGTCCCCATACTGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCAACCCAT--CATTAAAATTGTGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGTCATACGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGATAAGTGGAATTCAGTCAGAGTACA-----AGCGATTTCAACTATACACAC--AGTG------TGATCTT-GTCGACCT-------ATT-------------T-------------ACTGGCTCATATTAAGAGACCTTTACGGTGCCGCGAAGCATAGCATACAtgaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccaactctgtattgtacagaagtccccatactggtcagattgataactcgcataacaacaaacacgacagtacaagaataaacaacatgtacatgtcgtttcaaagacaatttcaacccatcattaaaattgtgttttcaataagcttacaactaggttgcacgtttgtgtgtagtcttcgtgctcggtcatacgcttttgttttaaagaagcttatgttaaatgcctgtttaacaccttcatgataagtggaattcagtcagagtacaagcgatttcaactatacacacagtgtgatcttgtcgacctatttactggctcatattaagagacctttacggtgccgcgaagcatagcataca
gi|5 : gaatttaataagtgatacattacactgaattgcactactgcccaaaccatgctgatgatatacattttagccaacaattgctctttgttgggcaagtcaattaggcgttgttgggattataaataaatgcttacctaccaaaccgattttttaaagagggtcgggttttgataaacaatgtgttattatttattgttctggtcgaattgtgttgtaaagtaaccaagtttgatgccgtagtcactttttcggcagaatattgaattattctctgactgaacaagtaatttgaaattgcaagggtgacattttgagagaaaaaaaggatttaaaacttgtacattatatcaacgagtttgttgtaaactttgggatgaattcagacttcacaacccttttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccataatattatacaactaccataagtttttctctttctctttatattgttttcttttatgaaaaatgaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaAGGATATATATTACTTTTTGAAGAATTTGATAAGTGATATATTACACTGAATTGCA--------------------------------TACATTTTAGTCAAAAGTTACTCTATGTTGGA-CA--AGTCGATT-----GGGCGTTGT--TGGGAT-TATAAAAAAAAA-----TGCTTACCTACC-AA-ATCGATTTTTT--AAAGAGA------GGGTTTTGATAAACAATGTGTTATTATTTATT-A-TTCTGGTCAAGTCGTGTTGTAAAGTAATCAAGTTCGA
gi|5 : tA-AGTTATTTGTAATAGCAAGAGTGACTTTTTGAGA-GAAATAATGG--TTTAAAATTGGTACATAATATCCACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCAAAACCCTCTTCGGTAAAACGTATGGG-TCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATCAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTATCTTTCTCTTTATATTGTTTTTCTTTTATGGAAAAagttatttgtaatagcaagagtgactttttgagagaaataatggtttaaaattggtacataatatccacgagtttgttgtaaactttgggatgaattcagacttcaaaaccctcttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccatatatacctaccatcagttcccaaagatagttgtttacacgattttaatcttatctttctctttatattgtttttcttttatggaaaatgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagacccaactctgtattgtacggaagtacccataatgctcagattgataactcgcataacaacaaacacgacagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagttttcgtgctcggccattcgcttttgttttaaagaagcttatattaaatgcctgtttaacaccttcatgacaagtggtcagttagagtacaagtgatttcaactatacacacagtgtgtgttcttgtcgacctatttactggctcatattacgtgacctttacggtgccgcgaaacatagtatacaaaaatgttcttgacttccgaaccgttttttt
gi|5 : taggatatatattactttttgaagaatttgataagtgatatattacactgaattgcatacattttagtcaaaagttactctatgttggacaagtcgattgggcgttgttgggattataaaaaaaaatgcttacctaccaaatcgattttttaaagagagggttttgataaacaatgtgttattatttattattctggtcaagtcgtgttgtaaagtaatcaagttcgCCCAACTCTGTATTGTACGGAAGTACCCATAATGCTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTGTGTTTTCAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTTTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATATTAAATGCCTGT--TTAACACCTTCATGACAAGTGG---TCAGTTAGAGTACA-----AGTGATTTCAACTATACACAC--AGTG------TG----T-GTTCTTGTCGACCT-ATT-------------T-------------ACTGGCTCATATTACGTGACCTTTACGGTGCCGCGAAACATAGTATACAAAAATGTTCTTGACTTCCGAACC-GTTTTTTTtgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagacccaactctgtattgtacggaagtacccataatgctcagattgataactcgcataacaacaaacacgacagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagttttcgtgctcggccattcgcttttgttttaaagaagcttatattaaatgcctgtttaacaccttcatgacaagtggtcagttagagtacaagtgatttcaactatacacacagtgtgtgttcttgtcgacctatttactggctcatattacgtgacctttacggtgccgcgaaacatagtatacaaaaatgttcttgacttccgaaccgttttttt
gi|6 : taggatatatattactttttgaagaatttgataagtgatatattacactgaattgcatacattttagtcaaaagttactctatgttggacaagtcgattgggcgttgttgggattataaaaaaaaatgcttacctaccaaatcgattttttaaagagagggttttgataaacaatgtgttattatttattattctggtcaagtcgtgttgtaaagtaatcaagttcgaagttatttgtaatagcaagagtgactttttgagagaaataatggtttaaaattggtacataatatccacgagtttgttgtaaactttgggatgaattcagacttcaaaaccctcttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccatatatacctaccatcagttcccaaagatagttgtttacacgattttaatcttatctttctctttatattgtttttcttttatggaaaatgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagaAGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCGCT-----ACT--TCAAACCATGCTGATGAT-ATACA-TTTAGCCAACAATTGCTCTATGTTGGG-CA--AGTCGATT-----TTACGTTGT--TTGGAT-TTT-TAAAAAAA-----TACTTACCTACC-AA-ACCGATTTTTT--AAAGATGG---TCGGGTTTGGATAAACGATGTGTTATTGTTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATACTG-AATTATTCTCTTACTAAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTT--GA-TAAAAAAAAGGTTTTAAAACCGGTTAATAATATCGACGAGTTTGTTGTTAACTTTGGAATGAATTCAGACTTCACAACCTTCTTCTATAAAACGTA--GGGTTACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATGAGTTCCCAAAGATAGTTGTTTACACGACT-TTA-ATCTTCTTTTTCTCTTTATATTT-TTTTTCTT
gi|7 : tAGGATATATGTTACTTTTCGAAGAATTT-----GTGATATATTACACTAAATTGCA--------------------------------TACATTTTAGCCAAAAGTTACTCTATGTTGGA-CA--AGTCGATT-----GGGCATTGT--TGGGAT-TAT-AAAAAAAAA----TGCTTACCTACC-AA-ACCGA-TTTTTT-AAAGAGGG---TTGGGTTTTGATAAACGATGTGTTATTATTTATT-A-TTCTGGTCCAGTCGTGTTGTAAAGTAATCAGGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGATTTAACA-AGTTATTTATAATAGCATGGGTGACTTTTTGAGA-GAAATAAAGG--TTTAAAATTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCTTCTTCGGTAAAACGTA-TGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACAAGATT-TTA-ATCTTCTCTTTCTCTTTATATTG-TTTTCTTTTATGGA
gi|8 : tACTGAATTGCACTGAATTACTGTCCAAACCATGCTGATGAT-ATACATTTTAACCAACAGTTGCTGTATGTTGGG-CA--AATCGATT-----GGACATTGT--TGGGAT-TTT-AAAAAAA------TGCTAACCTAAG-AT-ACCGA-TTTTTT-AAAGAGGG---TTGGGTTTGAATAAACAATGTGCTATTGTTTATT-A-TTCTGGTCAATTTGTGTTGTAAAGTTATCAAGTTCGATGCTGTAGTTACTTTTTTCAGCAGAATATTG-AATTATTCTCTGATTAAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGGTGAAAAAAAAGGTTTTAAAACTGGTACATAATATCAATGAGTTTGTTGTAAACTTTGGAATGAATTCAGACTTCACAACTATCTTCAGTAAAACGTAGGGTGTCACTATAAAATGTA-TATTTTACATTAAAACCTTA----TA-----TAC--CTACCATAAAGTCCCAAAGATAGTTGTTTACACGATT-TAA-ATCTTCTTTTTCTCTTTAGATTG-TTTTCTTTTATG
gi|9 : GAATTTAATAAGTGATATATTACACTGAATTGCTCT-----ACTGCCCAAACCATGCTGATGAT-ATACATGTTAGCCAACAGTTGCTCTATGTTGAG-CA--AGACTATTT----GGGCGTTGT--TTGGTT-TAT-AAAAAAAT-----TGCTTACCTACC-AA-ACCGAATTTTT--AAAGAGGG---TAGGGTTTTGATAAACAATGTACTATTATTTATT-A-TTCTGGTCGAGTCATGTTGTAAAGTAATCAAGTCTGATGCCGTAGTCACTTTTT-CGGCAGAATACTG-AATTATTCTCTGACTGAACA-AGTAATTTGTTATAGCA-------------------------AGGGT-----GACTGGTACATAATATCAACGATATTGTTGTAAACTTTGGGATGAATTCAGACTTATCAACTGTCTTCGTTAAAACGTA-TGGGTCACTATAAAATGTT-TAa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATGAAATTTATATTTGCAGAAGACATCAAATTGCCAGAGCTTCTACCAGTAGGTTGTCTAGCACACGGACTCGTGTTTTCACACTACATTGGTTTTCTGACATACGTTTTGCCAGGTAAATTAGAATTAAACACTTTTTGGACAGCTTTCATAAAAAGATAAAAAAAAAAAATATTCTTATTTATTTTACATTGATTGTGAAACATGTTCTTACAGATTAGACAAATCATGCTTGAAGTCTTCTTGGTTAGAACCAATACTAAGCATTTTGTGGATAAAGGACATCACACAAAGTCGTGGC
Unaligned ( gi|23 ): TTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|30 ): AGCATATGCGGATAAAGTCTATTGTCAAAGGATACCACAGACCAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 111111111111 11111 11111 1 11 1 11111 33333333333333333333333333333333333333333333
lowQualScore : 555555555555 0 3 1 3 44 11111 44 3 1 88 11111 3 3 6 44 555 0 3 3 0 3 3 3 0 1 3 0 77 0 7 3 8888 00000 55 3 3 0 3 33 44 1 33 77777 1 44 999999 7777 3 55555555555555555555555555555555555555555555 1 1 5
lowQualScore : ............ . . . . .. ..... .. . . .. ..... . . . .. ... . . . . . . . . . . . .. . . . .... ..... .. . . . . .. .. . .. ..... . .. ...... .... . ............................................ . . .
lowQualScore : 333333333333 4 3 8 3 66 77777 66 3 0 88 77777 3 3 7 66 888 4 1 1 4 3 3 3 5 4 6 3 11 5 1 3 5555 00000 55 6 6 5 6 99 22 0 99 11111 0 66 666666 1111 3 44444444444444444444444444444444444444444444 0 0 7
consensus : AGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-----GGGCGTTGT--TGGGAT-TNT-AAAAAAAA-----TGCTTACCTACC-AA-ACCGA-TTTTT--AAAGAGGG---TCGGGTTTGGATAAACAATGTGTTATTATTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGACTGAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGA-GAAAAAAAGGGTTTTAAAACTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTTTCTTTTATGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACTCTGTATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTNTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAGAGTACA-----AGCGATTTCAACNATACACAC--AGTG------TG----T-G--------------ATC-------------T-------------ACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAANGTTCTTGACTTCCGNACC-TTTTTTTTGC
Reference ( family-806 ) : AGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-----GGGCGTTGT--TGGGAT-TNT-AAAAAAAA-----TGCTTACCTACC-AA-ACCGA-TTTTT--AAAGAGGG---TCGGGTTTGGATAAACAATGTGTTATTATTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGACTGAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGA-GAAAAAAAGGGTTTTAAAACTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTTTCTTTTATGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACTCTGTATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTNTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAGAGTACA-----AGCGATTTCAACNATACACAC--AGTG------TG----T-G--------------ATC-------------T-------------ACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAANGTTCTTGACTTCCGNACC-TTTTTTTTGC
gi|1 : AGGATATATATTACCCTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAATCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-----GGACATTGT--TGGGAT-TTT-AAAAAAAA-----TGCTTACCTACC-AA-ACAGA-TTTTT--AAAGAGGG---TCAGGTTTGGATAAACAATGTGTTATTATTTAAT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGACACTTT---CGGCAGAATATTG-AATTATTCTCTGATTAAACA-AGTTATTTGTAATAGCAAGTGTGACTTTTTGAGA-AAAAAAAAAGGTTTTAAAACTGGTACATTATATCGACGAGTTTGTTGTAAACTTTGGAATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTCTAAGATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGACAGTTGTTTACACGATT-TTA-ATTTTCTTTTTCTCTTTAAATTG-TTTTCTTTTATGAAAAA
gi|1 : CCCAACACTGTATTGTATGGAAGTCCCCATAATGACCAGATTGATAACTCACATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTCTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTATAGTATTCATGCTCGGCCATTCGCTTTTGTTTTAAAGAAACCTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTCGAATTCAATTAGAGTGCAGTGCAAGCGATTTCAACGATACACAC--AGTG------TG----T-G--------------ATC-------------T-------------ACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAAAGTTCTTAACTTCCGTACC-TTTTTTTTGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccaacactgtattgtatggaagtccccataatgaccagattgataactcacataacaacaaacacgacagtacaagaataaacaacatgtacatgtcgtctcaaagacaatttcgatccatcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcatgctcggccattcgcttttgttttaaagaaacctatgttaaatgcctgtttaacaccttcatgacaagtcgaattcaattagagtgcagtgcaagcgatttcaacgatacacacagtgtgtgatctactggctcatattaagtgacctttacggtgccgcgaagcatagcatacaaaaaagttcttaacttccgtaccttttttttgc
gi|10 : aggatatatattacccttcgaagaatttaataagtgatatattacactgaattgcactactgcccaaatcatgctgatgatatacattttagccaacagttgctctatgttgggcaagtcgattggacattgttgggattttaaaaaaaatgcttacctaccaaacagatttttaaagagggtcaggtttggataaacaatgtgttattatttaatattctggtcgagtcgtgttgtaaagtaatcaagttcgatgccgtagacactttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagtgtgactttttgagaaaaaaaaaaggttttaaaactggtacattatatcgacgagtttgttgtaaactttggaatgaattcagacttcacaaccctcttcggtaaaacgtagggggtcactctaagatgtatattttacattaaaaccatatatacctaccataagttcccaaagacagttgtttacacgattttaattttctttttctctttaaattgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCAACTCTGTATTGTACGGAAGACCCCATAATGGTC-------------GCATAACAACAAACACGACAGTAGAAGAATAAACAACATGTATATGTCGTTTCAAAGACAATTTCGAGCCAT--CATTATAATTATGTTTTCAATAAGCTTATAACTAGGT--TGCACGTTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAA---------------CCTTCATGGCAAGTGGAATTCAATTAGAATGCA-----AGCGATTTCAACGATACACACGTAGTGAAATCTTG----TCG--------------ACCTATT---------T-------------ACTAGCTCATATTAAGTGACCTTAACGATGCCGCGAAGCATAGCATACAAAAAAGTTCTTGACTTCCGTA-C-TTTTTTTTGC
gi|11 : CCAACTCTGTATTGTACGGATGTCTCCAAAATGGTCAGATTGATAACTCGCATGACATCAAACACGACAGCACAAGAATAAACAACATGTACCTGCCGTTTCAAAGTGAATTTCGATCCATGTCATTGAAATGGTATTTTCAATAAGGTCAGAACTAGGT--TGCACGTTTGTGTGCAGTTTTCATGCTCGGCCATTCACTTTTGTTGAAAAGAAGCTTACGTTAAATGCCTGT--TTAACACATTCATTACAAATGCAATTCAG-TA------A-----AGAGATTTCATCGATACACAA--TATG------TG----C-G--------------ATC-------------TTATCGGCCTATTAAATGACTTCTATTAAATTACCTTTACGGTGCCGCGAAGCATAGCAGACAAAAAAGCTTTT
gi|12 : CCAAAATCTGTATTGTACAGAAGTCCCCATAAAGGTCAGATTGATAACTCGCATTACAGCAAACACAACAATACAAGAATAAAAAACATGTACAAGTCATTTCAAAGATTATTTTGATCCAT--CATTCAAATTATGTTTTCAATAAGCTTACAACTA
gi|13 : taaatatatacctgtaaataaacaatacttaagtctttttactgataaaagtttcgatagatgattaaaatggcaaatgcagacttacttatgttaccttgattgagaaaaaaatgattacaacagatcatcctcgaagaattattgtgtagatccagtactaagcttatgcagacaaagtctattgttcaaggacacaacagaATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTATCATTACAACAAACACGACAGTACAAGAATAAACAACATGTACAAGTTATTCCAAAGACAATTTCGATCCAT--CATTAAAAT--TGTTTTCAATAAGCTTATAACTAGGC--TACACGTT--TGTCCCGTCTTTGTGCTCGGCCATTCAACTTTGTTTCAAAGAAGCTTATGTTAAATACCTGT--TTAACGCCTTCATGACATGTGGAATTTAATAAGAGTACA-----AGCGATTTCAACGATACACAC--AGTG------CG----T-G--------------ATCTTATCGACCTATTT-------------ACTGACTCATAATAAGTGACCTTTATGGTGCCG
gi|14 : acccaatcaCAAATACGACAGTACAAGGATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGTTCCAT--AATTAAAATTGTGTTTTTAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAACTTATGTTAAATGCCTGT--TAAACACCTTCATGACAAGTGGAATTCAGTTACAATACA-----TGTGATTTCAACTATACACAC--AGTT------AG----T-G--------------ATC-------------TTGTCGGCCTATTTACTGGCTCATATTACATGACCTTTATGGTGCCGCGAAGCATAGTATACAAAAATGTTCTTGACTTCCGAACC-TTTTTTTTGCt
gi|15 : TTAATAAGTGATATATTTCACCAAATTGTACT-----ACTTTCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTTTATGTTGGG-CA--AGTGGATT-----GGGCGTTGT--TGGGATATCT--ATAAGAA-----TGCTTACCTACT-AA-ATCGA-TTTTTA-AAAGAGGG---T
gi|15 : CGGGTTTGGATAAACAATGTGTTATC---TATT-AATTGTAGTCGAGTTGTGTT-TATAGTGGTCAAGTTTGATGCCGTAGTCACCTTTT-CGGCAGAATATTG-AACTACTCTCTGATTGAACA-AGTTATTTGtagaccgggacggcagcatgctgcctagccgagacgggtttggataaacaatgtgttatctattaattgtagtcgagttgtgtttatagtggtcaagtttgatgccgtagtcaccttttcggcagaatattgaactactctctgattgaacaagttatttg
gi|16 : ttaataagtgatatatttcaccaaattgtactactttccaaaccatgctgatgatatacattttagccaacagttgctttatgttgggcaagtggattgggcgttgttgggatatctataagaatgcttacctactaaatcgatttttaaaagagggttagaccgggacggcagcatgctgcctagccgagaTCAAGTTTGATGACGTAGTCACCTTTT-CGGCAGTACTTTG-AATTATTCTTTGGCTGAATA-AGTTATTTGTAATAGCAAGCAGGACTTTTT-----TTAAAAAAAAGTTTTAAAACTTGTACATGCTTTCGACTCACTTGATTTAAACTTGGGAAAGAATTCTGGCTT---AACCCT------TAAAACG-AGGGTGTCACTATAAAATATA-TATTTTACATTAAAACCGTA----TAATACGTAC--CTACCATAAGTTCCCAAA-ATATTTGTTTACACGGTTATTATAT-TTTTTTTTCTTTTTATATTG-TTTTCTTTTA-GGAA
gi|18 : ggTTTATT-A-TTCTGGTCGAGTCGTGTT-----GTAA---------A----GTAATCAAGTT---CG-----ATGCCGTAGTCACTTTTTAAC---ACGTAGTTATTTGTAAT-------------TTTTGAGA-AAAAA----GGTTTTAAAACGGGTACATAATATCGA-GAGTTTGTTGTAAACTTTGGAATGTATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGG-TCACTATAAAATGTA-TATTTTACATTAAAACCTTA----TA-----TTC--CTACCATAATTTCCCAAAAATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTT
gi|19 : GTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAAAAAGCTTACAACTAGGT--TGCATGTTTGTGTATGGTATTCGTGCTCGGCCATTCCCTTTTGTTTTAAAGAAGCTTTTGATAAATGCCTGT--TTAACACATTCATGACAAGCGGAATTCAATTAGTGTACA-----AGCGATTTCAACGATACACGC--ATTG------TG----T-G--------------ATCTTGTCAACCTATTT-------------ACTGGCTGATATTAAGTGAAATTTACGGTGCCGGGAAACATAGCATACAAAAAAATTCTT
gi|2 : AGGATATATATTACTCTTCGAAGAATTTAATAAGTGGTATATTACACTGAATTGCACT-----ACTGCCCAAACCATGTTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTTGG-CA--AGTCGATT-----GGATGTTGT--TGGGAT-TTT-AAAAAAAA-----TGCTTACCTACC-AT-ACCGA-TTTTT--TGGTTTGGTTTTCGGGTTTGGTTAAATAATGTGTTATTATTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAATAATCAAGTTTGATGCCATAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGATTAAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAAA-GAAAAAAAAGGTTTTAAAACTGGTACATTATATCGACGAGTTa
gi|2 : TCGGTAAAACGTAGGGGGTCACTATGCAATGTA-TATTTTACATTAAAACCATA----AA-----TAC--CTACCATATGTTTCCAAAGATAGTTGTTTACATGATT-TTA-ATCTTCTTTTTCTCTTTAAAATG-TTTTCTTTTATGAAAAAattatatcggtaaaacgtagggggtcactatgcaatgtatattttacattaaaaccataaatacctaccatatgtttccaaagatagttgtttacatgattttaatcttctttttctctttaaaatgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccgacactgtattgcacagcagtccccataatggtcagattgataactcgcataacaacaaacacgacagtacaaaaataaacaacatgtacatgtcgtttcaaagacaatttcgatctttcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcgtgctcggccattcgcttttgttttaaagaatcttatgttaaatgcctgtggtcagccttcttgacaagtggaattcatttagagtacaaccaatttcaacgatacacacagtgtgtgaatcatgtcgacctatttactggctcatattaactgacctttatggtgccgcgaagcatagcatacaaaaaagttcttgacttccgtacctttttttgc
gi|2 : aggatatatattactcttcgaagaatttaataagtggtatattacactgaattgcactactgcccaaaccatgttgatgatatacattttagccaacagttgctctatgtttggcaagtcgattggatgttgttgggattttaaaaaaaatgcttacctaccataccgattttttggtttggttttcgggtttggttaaataatgtgttattatttattattctggtcgagtcgtgttgtaaaataatcaagtttgatgccatagtcactttttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagggtgactttttgaaagaaaaaaaaggttttaaaactggtacattatatcgacgagttattataCCCGACACTGTATTGCACAGCAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAAAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCTTT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAATCTTATGTTAAATGCCTGTGGTCA--GCCTTCTTGACAAGTGGAATTCATTTAGAGTACA-----ACCAATTTCAACGATACACAC--AGTG------TG----T-GAATCATGTCGACCTATT-------------T-------------ACTGGCTCATATTAACTGACCTTTATGGTGCCGCGAAGCATAGCATACAAAAAAGTTCTTGACTTCCGTACC-TTTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccgacactgtattgcacagcagtccccataatggtcagattgataactcgcataacaacaaacacgacagtacaaaaataaacaacatgtacatgtcgtttcaaagacaatttcgatctttcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcgtgctcggccattcgcttttgttttaaagaatcttatgttaaatgcctgtggtcagccttcttgacaagtggaattcatttagagtacaaccaatttcaacgatacacacagtgtgtgaatcatgtcgacctatttactggctcatattaactgacctttatggtgccgcgaagcatagcatacaaaaaagttcttgacttccgtacctttttttgc
gi|20 : aggatatatattactcttcgaagaatttaataagtggtatattacactgaattgcactactgcccaaaccatgttgatgatatacattttagccaacagttgctctatgtttggcaagtcgattggatgttgttgggattttaaaaaaaatgcttacctaccataccgattttttggtttggttttcgggtttggttaaataatgtgttattatttattattctggtcgagtcgtgttgtaaaataatcaagtttgatgccatagtcactttttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagggtgactttttgaaagaaaaaaaaggttttaaaactggtacattatatcgacgagttattatatcggtaaaacgtagggggtcactatgcaatgtatattttacattaaaaccataaatacctaccatatgtttccaaagatagttgtttacatgattttaatcttctttttctctttaaaatgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaAACATGTACAAGTCGTATTAAAGACCATTTCGATCTAT--CATTAAAATTATGTTTTTAATAAGCTTACCACTAGGT--TGCACGCTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTT-----------------GATGCCTGT--TTAACACATTCTTGACAGGTGAAATTCAATTAGAATACA-----AGCGATTTCAACTATACACAC--ATTG------TG----T-G--------------ATC-------------T-------------gc
gi|21 : AAACATGACAGTACAAGAATAAACAACATGCACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCATGTTTGTGTATAGTATTCGTGCTCGGCCATTTGCTTTTG-----AAGAAGCTTATGTTGAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAATTAGAGTACA-----AGCGATTTCAtagcatacaaacaaaatcttaactcttttttttgcta
gi|22 : GT--TTAACACCTTCACGACAAGTGGAATTCAGTTGGAGTACA-----AGTGATTTCAACTATACACAC--TGTA------TG----T-G--------------ATC-------------TTGTTGACCTGTTAACTGGTTCATATGAAGTGACCTTTACGGTGCCGCGAAGCATAGTATACAAAAACGTTCTTGACTTCCGTACC-TTTTTTTTGC
gi|24 : GATGTT-A---ACTTTAGCCAA-AATTGCTTT-TTTTGGATCAGCAGTTTATG-----AGAGGTTGGGGTGGAGC-AAT-AAAAAAAAGTATTTGCTTACCTACTTAATACTCA-TTTTTTCAAAGAGGG---TTGGGTTTGGGTAA----------ATTGTTTATTAA-TTCTG
gi|25 : CCAT--CCTCAACATTATATTTT-----ACC---CCATTCGGTCTTCTACGTTTGTGTGCAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAA-----------AAATGCCACT--TAAACACCTTCATGACAAGTGGAATTCAATAAGAGTACA-----GGCGATTTCAACCATACACcattaatcaaat
gi|26 : ATGCACATGGTTGTACATTTTAGCCAATAGTGGCTCTGTATTGGA-TA--CGTGGGTTATAACAGGTGAAGT--T---AT-TGC-AATAAAAA-----CGTTTTCCTACC-GA-CATGA-TTTTT---AAGAGGA---ACCGGTAAGCGCAAACAAt
gi|27 : tgATTCATT-T-TTCTGGTAGAGTTGTGTTTTAAACTAATCAAGTTTGATGCTGTAGTCATTGTTT-CTGCAGAATATTG-AACTATTCTCTGACTGAA
gi|28 : tgtaCATAATACCGACGAGTTTGTTGTAAACTTT-------ATT---------------TGTT-GTTAA--CGTA-GGGGTCACTACAAAATTTATTATTCT
gi|29 : CCCAAGATAGTTGTTTACATAGTT-TTA-ATCTTATTTTTCTTTTTATATTG-TTTTCTTTGATGGA
gi|3 : aAGTAA-ATATTACACTGAATTGCA--------------------------------TAGATTTTAGCCAAAAGTTTCTCTATGTTGGG-CA--AGTCGATT-----GGGCATTGT--TGGGAT-TAT--AAAAAAA-----TGCTTACCTACC-AA-ACCGATTTTTT--AAAGAGGG---TCGGGTTTTGATAAACAATGTGTTATTATTAATT-G-TTCTGGTCGAGTCGTATTGTAAAGTAATCAAGTTCGATGCCGTAATCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGATTGAACA-AGTTATTTGTAATAACAAGGGTGACTTTTAGAGA-GAAATAAAGG--TTTAAAATTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGAATTCACAACCCTATTCAATAAAACGTA-ATGGTCACTATAAAATGTA-TATTTCACATTAAAACCATA----TA-----TAC--TTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTCTTTCTCTTTATATTA-TTTTCTTTTATAGAAAA
gi|3 : CCCAACTCTGTATTGTACGGAAGTCCC-ATAATGGTCAGATTGATAACTCGCATAACAACAAACACGATAGTACAAGAATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTGTGTTTTCAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGCCATTCTTTTTTATTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAGGGTACA-----AGGGATTTCAACTATACACAC--AGTG------TG----T-GATTTTGTCGACCT-ATT-------------T-------------ACTGGCTCATATTACGTGACCATTACGGTGCCGCGAAGCATAGTATACAAAAACGTTCTTGACTTCCGAACCATTTTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccaactctgtattgtacggaagtcccataatggtcagattgataactcgcataacaacaaacacgatagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagtcttcgtgctcggccattcttttttattttaaagaagcttatgttaaatgcctgtttaacaccttcatgacaagtggaattcagttagggtacaagggatttcaactatacacacagtgtgtgattttgtcgacctatttactggctcatattacgtgaccattacggtgccgcgaagcatagtatacaaaaacgttcttgacttccgaaccatttttttttt
gi|4 : agtaaatattacactgaattgcatagattttagccaaaagtttctctatgttgggcaagtcgattgggcattgttgggattataaaaaaatgcttacctaccaaaccgattttttaaagagggtcgggttttgataaacaatgtgttattattaattgttctggtcgagtcgtattgtaaagtaatcaagttcgatgccgtaatcactttttcggcagaatattgaattattctctgattgaacaagttatttgtaataacaagggtgacttttagagagaaataaaggtttaaaattggtacataatatcgacgagtttgttgtaaactttgggatgaattcagaattcacaaccctattcaataaaacgtaatggtcactataaaatgtatatttcacattaaaaccatatatacttaccataagttcccaaagatagttgtttacacgattttaatcttctctttctctttatattattttcttttatagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaGAATTTAATAAGTGATACATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAATTGCTCTTTGTTGGG-CA--AGTCAATT-----AGGCGTTGT--TGGGAT-TAT--AAATAAA-----TGCTTACCTACC-AA-ACCGATTTTTT--AAAGAGGG---TCGGGTTTTGATAAACAATGTGTTATTATTTATT-G-TTCTGGTCGAATTGTGTTGTAAAGTAACCAAGTTTGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGACTGAACA-AGTAATTTGAAATTGCAAGGGTGACATTTTGAGA-GAAAAAAAGGA-TTTAAAACTTGTACATTATATCAACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTTTTCGGTAAAACGTA-TGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATAATATTA-----TACAACTACCATAAGTT-----------------------TT-TC---TCTT---TCTC--TTTATATTG-TTTTCTTTTATGAAAAAtt
gi|4 : CCCAACTCTGTATTGTACAGAAGTCCCCATACTGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCAACCCAT--CATTAAAATTGTGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGTCATACGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGATAAGTGGAATTCAGTCAGAGTACA-----AGCGATTTCAACTATACACAC--AGTG------TGATCTT-GTCGACCT-------ATT-------------T-------------ACTGGCTCATATTAAGAGACCTTTACGGTGCCGCGAAGCATAGCATACAtgaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccaactctgtattgtacagaagtccccatactggtcagattgataactcgcataacaacaaacacgacagtacaagaataaacaacatgtacatgtcgtttcaaagacaatttcaacccatcattaaaattgtgttttcaataagcttacaactaggttgcacgtttgtgtgtagtcttcgtgctcggtcatacgcttttgttttaaagaagcttatgttaaatgcctgtttaacaccttcatgataagtggaattcagtcagagtacaagcgatttcaactatacacacagtgtgatcttgtcgacctatttactggctcatattaagagacctttacggtgccgcgaagcatagcataca
gi|5 : gaatttaataagtgatacattacactgaattgcactactgcccaaaccatgctgatgatatacattttagccaacaattgctctttgttgggcaagtcaattaggcgttgttgggattataaataaatgcttacctaccaaaccgattttttaaagagggtcgggttttgataaacaatgtgttattatttattgttctggtcgaattgtgttgtaaagtaaccaagtttgatgccgtagtcactttttcggcagaatattgaattattctctgactgaacaagtaatttgaaattgcaagggtgacattttgagagaaaaaaaggatttaaaacttgtacattatatcaacgagtttgttgtaaactttgggatgaattcagacttcacaacccttttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccataatattatacaactaccataagtttttctctttctctttatattgttttcttttatgaaaaatgaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaAGGATATATATTACTTTTTGAAGAATTTGATAAGTGATATATTACACTGAATTGCA--------------------------------TACATTTTAGTCAAAAGTTACTCTATGTTGGA-CA--AGTCGATT-----GGGCGTTGT--TGGGAT-TATAAAAAAAAA-----TGCTTACCTACC-AA-ATCGATTTTTT--AAAGAGA------GGGTTTTGATAAACAATGTGTTATTATTTATT-A-TTCTGGTCAAGTCGTGTTGTAAAGTAATCAAGTTCGA
gi|5 : tA-AGTTATTTGTAATAGCAAGAGTGACTTTTTGAGA-GAAATAATGG--TTTAAAATTGGTACATAATATCCACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCAAAACCCTCTTCGGTAAAACGTATGGG-TCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATCAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTATCTTTCTCTTTATATTGTTTTTCTTTTATGGAAAAagttatttgtaatagcaagagtgactttttgagagaaataatggtttaaaattggtacataatatccacgagtttgttgtaaactttgggatgaattcagacttcaaaaccctcttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccatatatacctaccatcagttcccaaagatagttgtttacacgattttaatcttatctttctctttatattgtttttcttttatggaaaatgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagacccaactctgtattgtacggaagtacccataatgctcagattgataactcgcataacaacaaacacgacagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagttttcgtgctcggccattcgcttttgttttaaagaagcttatattaaatgcctgtttaacaccttcatgacaagtggtcagttagagtacaagtgatttcaactatacacacagtgtgtgttcttgtcgacctatttactggctcatattacgtgacctttacggtgccgcgaaacatagtatacaaaaatgttcttgacttccgaaccgttttttt
gi|5 : taggatatatattactttttgaagaatttgataagtgatatattacactgaattgcatacattttagtcaaaagttactctatgttggacaagtcgattgggcgttgttgggattataaaaaaaaatgcttacctaccaaatcgattttttaaagagagggttttgataaacaatgtgttattatttattattctggtcaagtcgtgttgtaaagtaatcaagttcgCCCAACTCTGTATTGTACGGAAGTACCCATAATGCTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTGTGTTTTCAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTTTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATATTAAATGCCTGT--TTAACACCTTCATGACAAGTGG---TCAGTTAGAGTACA-----AGTGATTTCAACTATACACAC--AGTG------TG----T-GTTCTTGTCGACCT-ATT-------------T-------------ACTGGCTCATATTACGTGACCTTTACGGTGCCGCGAAACATAGTATACAAAAATGTTCTTGACTTCCGAACC-GTTTTTTTtgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagacccaactctgtattgtacggaagtacccataatgctcagattgataactcgcataacaacaaacacgacagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagttttcgtgctcggccattcgcttttgttttaaagaagcttatattaaatgcctgtttaacaccttcatgacaagtggtcagttagagtacaagtgatttcaactatacacacagtgtgtgttcttgtcgacctatttactggctcatattacgtgacctttacggtgccgcgaaacatagtatacaaaaatgttcttgacttccgaaccgttttttt
gi|6 : taggatatatattactttttgaagaatttgataagtgatatattacactgaattgcatacattttagtcaaaagttactctatgttggacaagtcgattgggcgttgttgggattataaaaaaaaatgcttacctaccaaatcgattttttaaagagagggttttgataaacaatgtgttattatttattattctggtcaagtcgtgttgtaaagtaatcaagttcgaagttatttgtaatagcaagagtgactttttgagagaaataatggtttaaaattggtacataatatccacgagtttgttgtaaactttgggatgaattcagacttcaaaaccctcttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccatatatacctaccatcagttcccaaagatagttgtttacacgattttaatcttatctttctctttatattgtttttcttttatggaaaatgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagaAGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCGCT-----ACT--TCAAACCATGCTGATGAT-ATACA-TTTAGCCAACAATTGCTCTATGTTGGG-CA--AGTCGATT-----TTACGTTGT--TTGGAT-TTT-TAAAAAAA-----TACTTACCTACC-AA-ACCGATTTTTT--AAAGATGG---TCGGGTTTGGATAAACGATGTGTTATTGTTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATACTG-AATTATTCTCTTACTAAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTT--GA-TAAAAAAAAGGTTTTAAAACCGGTTAATAATATCGACGAGTTTGTTGTTAACTTTGGAATGAATTCAGACTTCACAACCTTCTTCTATAAAACGTA--GGGTTACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATGAGTTCCCAAAGATAGTTGTTTACACGACT-TTA-ATCTTCTTTTTCTCTTTATATTT-TTTTTCTT
gi|7 : tAGGATATATGTTACTTTTCGAAGAATTT-----GTGATATATTACACTAAATTGCA--------------------------------TACATTTTAGCCAAAAGTTACTCTATGTTGGA-CA--AGTCGATT-----GGGCATTGT--TGGGAT-TAT-AAAAAAAAA----TGCTTACCTACC-AA-ACCGA-TTTTTT-AAAGAGGG---TTGGGTTTTGATAAACGATGTGTTATTATTTATT-A-TTCTGGTCCAGTCGTGTTGTAAAGTAATCAGGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGATTTAACA-AGTTATTTATAATAGCATGGGTGACTTTTTGAGA-GAAATAAAGG--TTTAAAATTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCTTCTTCGGTAAAACGTA-TGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACAAGATT-TTA-ATCTTCTCTTTCTCTTTATATTG-TTTTCTTTTATGGA
gi|8 : tACTGAATTGCACTGAATTACTGTCCAAACCATGCTGATGAT-ATACATTTTAACCAACAGTTGCTGTATGTTGGG-CA--AATCGATT-----GGACATTGT--TGGGAT-TTT-AAAAAAA------TGCTAACCTAAG-AT-ACCGA-TTTTTT-AAAGAGGG---TTGGGTTTGAATAAACAATGTGCTATTGTTTATT-A-TTCTGGTCAATTTGTGTTGTAAAGTTATCAAGTTCGATGCTGTAGTTACTTTTTTCAGCAGAATATTG-AATTATTCTCTGATTAAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGGTGAAAAAAAAGGTTTTAAAACTGGTACATAATATCAATGAGTTTGTTGTAAACTTTGGAATGAATTCAGACTTCACAACTATCTTCAGTAAAACGTAGGGTGTCACTATAAAATGTA-TATTTTACATTAAAACCTTA----TA-----TAC--CTACCATAAAGTCCCAAAGATAGTTGTTTACACGATT-TAA-ATCTTCTTTTTCTCTTTAGATTG-TTTTCTTTTATG
gi|9 : GAATTTAATAAGTGATATATTACACTGAATTGCTCT-----ACTGCCCAAACCATGCTGATGAT-ATACATGTTAGCCAACAGTTGCTCTATGTTGAG-CA--AGACTATTT----GGGCGTTGT--TTGGTT-TAT-AAAAAAAT-----TGCTTACCTACC-AA-ACCGAATTTTT--AAAGAGGG---TAGGGTTTTGATAAACAATGTACTATTATTTATT-A-TTCTGGTCGAGTCATGTTGTAAAGTAATCAAGTCTGATGCCGTAGTCACTTTTT-CGGCAGAATACTG-AATTATTCTCTGACTGAACA-AGTAATTTGTTATAGCA-------------------------AGGGT-----GACTGGTACATAATATCAACGATATTGTTGTAAACTTTGGGATGAATTCAGACTTATCAACTGTCTTCGTTAAAACGTA-TGGGTCACTATAAAATGTT-TAa
blockSeqs : CTGAATTACTGT T C T GC ATAAC GG A C AA GTATT T T T TC TTT A A T T T G T GT G T ATAT ATACG AA A T T GT CT A GG . G GT AAATCT ATCT C AATCATGTCGACCTATTT A T A
blockSeqs : CTACTTT . C . . T . . T A A . . T A . . . . . . G . GT G . . . . . . . . . T . . G . . . . ATCTTATCGGCCTATTA A A .
blockSeqs : CTACTGC . T . . . . . A A . . . T T . . . . . . G . GT G . . . . . . . . . C . . G . . . . ATCTTATCGACCTATTT T T .
blockSeqs : CTACTGC . A . . . . . G A . . . T T . . . . . . G . GT T . . . . . . . . . C . . T . . . . ATCTTGTCGGCCTATTT A T .
blockSeqs : CTACTGC . C . . . . . A T . . . A . . . . . . . G . GT G . . . . . . . . . A . . G . . . . ATCTTGTCAACCTATTT A A .
blockSeqs : CTACT . A . . . . . A A . . . . . . . . . . . G . GT . . . . . . . . . . A . . G . . . . ATCTTGTTGACCTGTTA C A .
blockSeqs : . . C . . . . . A A . . . . . . . . . . . G . A . . . . . . . . . . A . . T . . . . ATTTTGTCGACCTATTT C
blockSeqs : . . A . . . . . T A . . . . . . . . . . . . . . . . . . . . . . . . A . . T . . . . TTCTTGTCGACCTATTT T
blockSeqs : . . C . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . A . . C . . . . TCGACCTATTT
blockSeqs : . C . . . . . T . . . . . . . . . . . . . . . . . . . . . . C . . T . . . . ACCTATTT
blockSeqs : . . . . . . . A . . . . . . . . . . . . . . . . C . . T . . . . ATCT
blockSeqs : . . . . T . . T
blockSeqs : . . .
blockSeqCons : ***** ATCTTGTCGACCTATTT***************************
originalCons : AGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-----GGGCGTTGT--TGGGAT-TNT-AAAAAAAA-----TGCTTACCTACC-AA-ACCGA-TTTTT--AAAGAGGG---TCGGGTTTGGATAAACAATGTGTTATTATTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGACTGAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGA-GAAAAAAAGGGTTTTAAAACTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTTTCTTTTATGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACTCTGTATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTNTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAGAGTACA-----AGCGATTTCAACNATACACAC--AGTG------TG----T-G--------------ATC-------------T-------------ACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAANGTTCTTGACTTCCGNACC-TTTTTTTTGC
finalCons : AGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-----GGGCGTTGT--TGGGAT-TNT-AAAAAAAA-----TGCTTACCTACC-AA-ACCGA-TTTTT--AAAGAGGG---TCGGGTTTGGATAAACAATGTGTTATTATTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGACTGAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGA-GAAAAAAAGGGTTTTAAAACTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTTTCTTTTATGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACTCTGTATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTNTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAGAGTACA-----AGCGATTTCAACNATACACAC--AGTG------TG----T-GATCTTGTCGACCTATTT---------------------------ACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAANGTTCTTGACTTCCGNACC-TTTTTTTTGC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATGAAATTTATATTTGCAGAAGACATCAAATTGCCAGAGCTTCTACCAGTAGGTTGTCTAGCACACGGACTCGTGTTTTCACACTACATTGGTTTTCTGACATACGTTTTGCCAGGTAAATTAGAATTAAACACTTTTTGGACAGCTTTCATAAAAAGATAAAAAAAAAAAATATTCTTATTTATTTTACATTGATTGTGAAACATGTTCTTACAGATTAGACAAATCATGCTTGAAGTCTTCTTGGTTAGAACCAATACTAAGCATTTTGTGGATAAAGGACATCACACAAAGTCGTGGC
Unaligned ( gi|23 ): TTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|30 ): AGCATATGCGGATAAAGTCTATTGTCAAAGGATACCACAGACCAA
Alignments
lowQualScore : 111111111111 11111 11111 1 11 1 11111
lowQualScore : 555555555555 0 3 1 3 44 11111 44 3 1 88 11111 3 3 6 44 555 0 3 3 0 3 3 3 0 1 3 0 77 0 7 3 8888 00000 55 3 3 0 3 33 44 1 33 77777 1 3 3 1 1 5
lowQualScore : ............ . . . . .. ..... .. . . .. ..... . . . .. ... . . . . . . . . . . . .. . . . .... ..... .. . . . . .. .. . .. ..... . . . . . .
lowQualScore : 333333333333 4 3 8 3 66 77777 66 3 0 88 77777 3 3 7 66 888 4 1 1 4 3 3 3 5 4 6 3 11 5 1 3 5555 00000 55 6 6 5 6 99 22 0 99 11111 0 3 3 0 0 7
consensus : AGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-----GGGCGTT--GTTGGGAT-TNT-AAAAAAAA-----TGCTTACCTAC-CAA-ACCGA-TTTTT--AAAGAGGG---TCGGGTTTGGATAAACAATGTGTTATTATTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGACTGAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGA-GAAAAAAAGGGTTTTAAAACTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTTTCTTTTATGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACTCTGTATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTNTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAGAGTACA-----AGCGATTTCAACNATACACACAGT-GTGTG-ATCTTGTCGACCTATTTACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAANGTTCTTGACTTCCGNACC-TTTTTTTTGC
Reference ( family-806 ) : AGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-----GGGCGTT--GTTGGGAT-TNT-AAAAAAAA-----TGCTTACCTAC-CAA-ACCGA-TTTTT--AAAGAGGG---TCGGGTTTGGATAAACAATGTGTTATTATTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGACTGAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGA-GAAAAAAAGGGTTTTAAAACTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTTTCTTTTATGGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAACTCTGTATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTNTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAGAGTACA-----AGCGATTTCAACNATACACACAGT-GTGTG-ATCTTGTCGACCTATTTACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAANGTTCTTGACTTCCGNACC-TTTTTTTTGC
gi|1 : AGGATATATATTACCCTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCACT-----ACTGCCCAAATCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTGGG-CA--AGTCGATT-----GGACATT--GTTGGGAT-TTT-AAAAAAAA-----TGCTTACCTAC-CAA-ACAGA-TTTTT--AAAGAGGG---TCAGGTTTGGATAAACAATGTGTTATTATTTAAT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGACACTTT---CGGCAGAATATTG-AATTATTCTCTGATTAAACA-AGTTATTTGTAATAGCAAGTGTGACTTTTTGAGA-AAAAAAAAAGGTTTTAAAACTGGTACATTATATCGACGAGTTTGTTGTAAACTTTGGAATGAATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGGGTCACTCTAAGATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGACAGTTGTTTACACGATT-TTA-ATTTTCTTTTTCTCTTTAAATTG-TTTTCTTTTATGAAAAA
gi|1 : CCCAACACTGTATTGTATGGAAGTCCCCATAATGACCAGATTGATAACTCACATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTCTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTATAGTATTCATGCTCGGCCATTCGCTTTTGTTTTAAAGAAACCTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTCGAATTCAATTAGAGTGCAGTGCAAGCGATTTCAACGATACACACAGT-GTGTG-ATC-------------TACTGGCTCATATTAAGTGACCTTTACGGTGCCGCGAAGCATAGCATACAAAAAAGTTCTTAACTTCCGTACC-TTTTTTTTGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccaacactgtattgtatggaagtccccataatgaccagattgataactcacataacaacaaacacgacagtacaagaataaacaacatgtacatgtcgtctcaaagacaatttcgatccatcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcatgctcggccattcgcttttgttttaaagaaacctatgttaaatgcctgtttaacaccttcatgacaagtcgaattcaattagagtgcagtgcaagcgatttcaacgatacacacagtgtgtgatctactggctcatattaagtgacctttacggtgccgcgaagcatagcatacaaaaaagttcttaacttccgtaccttttttttgc
gi|10 : aggatatatattacccttcgaagaatttaataagtgatatattacactgaattgcactactgcccaaatcatgctgatgatatacattttagccaacagttgctctatgttgggcaagtcgattggacattgttgggattttaaaaaaaatgcttacctaccaaacagatttttaaagagggtcaggtttggataaacaatgtgttattatttaatattctggtcgagtcgtgttgtaaagtaatcaagttcgatgccgtagacactttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagtgtgactttttgagaaaaaaaaaaggttttaaaactggtacattatatcgacgagtttgttgtaaactttggaatgaattcagacttcacaaccctcttcggtaaaacgtagggggtcactctaagatgtatattttacattaaaaccatatatacctaccataagttcccaaagacagttgtttacacgattttaattttctttttctctttaaattgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCCAACTCTGTATTGTACGGAAGACCCCATAATGGTC-------------GCATAACAACAAACACGACAGTAGAAGAATAAACAACATGTATATGTCGTTTCAAAGACAATTTCGAGCCAT--CATTATAATTATGTTTTCAATAAGCTTATAACTAGGT--TGCACGTTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATGTTAAA---------------CCTTCATGGCAAGTGGAATTCAATTAGAATGCA-----AGCGATTTCAACGATACACAC-GTAGTGAA-ATCTTGTCGACCTATTTACTAGCTCATATTAAGTGACCTTAACGATGCCGCGAAGCATAGCATACAAAAAAGTTCTTGACTTCCGTA-C-TTTTTTTTGC
gi|11 : CCAACTCTGTATTGTACGGATGTCTCCAAAATGGTCAGATTGATAACTCGCATGACATCAAACACGACAGCACAAGAATAAACAACATGTACCTGCCGTTTCAAAGTGAATTTCGATCCATGTCATTGAAATGGTATTTTCAATAAGGTCAGAACTAGGT--TGCACGTTTGTGTGCAGTTTTCATGCTCGGCCATTCACTTTTGTTGAAAAGAAGCTTACGTTAAATGCCTGT--TTAACACATTCATTACAAATGCAATTCAG-TA------A-----AGAGATTTCATCGATACACAATAT-GTGCG-ATCTTATCGGCCTATTAAATGACTTCTATTAAATTACCTTTACGGTGCCGCGAAGCATAGCAGACAAAAAAGCTTTT
gi|12 : CCAAAATCTGTATTGTACAGAAGTCCCCATAAAGGTCAGATTGATAACTCGCATTACAGCAAACACAACAATACAAGAATAAAAAACATGTACAAGTCATTTCAAAGATTATTTTGATCCAT--CATTCAAATTATGTTTTCAATAAGCTTACAACTA
gi|13 : taaatatatacctgtaaataaacaatacttaagtctttttactgataaaagtttcgatagatgattaaaatggcaaatgcagacttacttatgttaccttgattgagaaaaaaatgattacaacagatcatcctcgaagaattattgtgtagatccagtactaagcttatgcagacaaagtctattgttcaaggacacaacagaATTGTACGGAAGTCCCCATAATGGTCAGATTGATAACTATCATTACAACAAACACGACAGTACAAGAATAAACAACATGTACAAGTTATTCCAAAGACAATTTCGATCCAT--CATTAAAATT--GTTTTCAATAAGCTTATAACTAGGC--TACACGTTTGTCCC--GTCTTTGTGCTCGGCCATTCAACTTTGTTTCAAAGAAGCTTATGTTAAATACCTGT--TTAACGCCTTCATGACATGTGGAATTTAATAAGAGTACA-----AGCGATTTCAACGATACACACAGT-GCGTG-ATCTTATCGACCTATTTACTGACTCATAATAAGTGACCTTTATGGTGCCG
gi|14 : acccaatcaCAAATACGACAGTACAAGGATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGTTCCAT--AATTAAAATTGTGTTTTTAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAACTTATGTTAAATGCCTGT--TAAACACCTTCATGACAAGTGGAATTCAGTTACAATACA-----TGTGATTTCAACTATACACACAGT-TAGTG-ATCTTGTCGGCCTATTTACTGGCTCATATTACATGACCTTTATGGTGCCGCGAAGCATAGTATACAAAAATGTTCTTGACTTCCGAACC-TTTTTTTTGCt
gi|15 : TTAATAAGTGATATATTTCACCAAATTGTACT-----ACTTTCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAGTTGCTTTATGTTGGG-CA--AGTGGATT-----GGGCGTT--GTTGGGATATCT--ATAAGAA-----TGCTTACCTAC-TAA-ATCGA-TTTTTA-AAAGAGGG---T
gi|15 : CGGGTTTGGATAAACAATGTGTTATC---TATT-AATTGTAGTCGAGTTGTGTT-TATAGTGGTCAAGTTTGATGCCGTAGTCACCTTTT-CGGCAGAATATTG-AACTACTCTCTGATTGAACA-AGTTATTTGtagaccgggacggcagcatgctgcctagccgagacgggtttggataaacaatgtgttatctattaattgtagtcgagttgtgtttatagtggtcaagtttgatgccgtagtcaccttttcggcagaatattgaactactctctgattgaacaagttatttg
gi|16 : ttaataagtgatatatttcaccaaattgtactactttccaaaccatgctgatgatatacattttagccaacagttgctttatgttgggcaagtggattgggcgttgttgggatatctataagaatgcttacctactaaatcgatttttaaaagagggttagaccgggacggcagcatgctgcctagccgagaTCAAGTTTGATGACGTAGTCACCTTTT-CGGCAGTACTTTG-AATTATTCTTTGGCTGAATA-AGTTATTTGTAATAGCAAGCAGGACTTTTT-----TTAAAAAAAAGTTTTAAAACTTGTACATGCTTTCGACTCACTTGATTTAAACTTGGGAAAGAATTCTGGCTT---AACCCT------TAAAACG-AGGGTGTCACTATAAAATATA-TATTTTACATTAAAACCGTA----TAATACGTAC--CTACCATAAGTTCCCAAA-ATATTTGTTTACACGGTTATTATAT-TTTTTTTTCTTTTTATATTG-TTTTCTTTTA-GGAA
gi|18 : ggTTTATT-A-TTCTGGTCGAGTCGTGTT-----GTAA---------A----GTAATCAAGTT---CG-----ATGCCGTAGTCACTTTTTAAC---ACGTAGTTATTTGTAAT-------------TTTTGAGA-AAAAA----GGTTTTAAAACGGGTACATAATATCGA-GAGTTTGTTGTAAACTTTGGAATGTATTCAGACTTCACAACCCTCTTCGGTAAAACGTAGGGG-TCACTATAAAATGTA-TATTTTACATTAAAACCTTA----TA-----TTC--CTACCATAATTTCCCAAAAATAGTTGTTTACACGATT-TTA-ATCTTCTTTTTCTCTTTATATTG-TTT
gi|19 : GTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAAAAAGCTTACAACTAGGT--TGCATGTTTGTGTATGGTATTCGTGCTCGGCCATTCCCTTTTGTTTTAAAGAAGCTTTTGATAAATGCCTGT--TTAACACATTCATGACAAGCGGAATTCAATTAGTGTACA-----AGCGATTTCAACGATACACGCATT-GTGTG-ATCTTGTCAACCTATTTACTGGCTGATATTAAGTGAAATTTACGGTGCCGGGAAACATAGCATACAAAAAAATTCTT
gi|2 : AGGATATATATTACTCTTCGAAGAATTTAATAAGTGGTATATTACACTGAATTGCACT-----ACTGCCCAAACCATGTTGATGAT-ATACATTTTAGCCAACAGTTGCTCTATGTTTGG-CA--AGTCGATT-----GGATGTT--GTTGGGAT-TTT-AAAAAAAA-----TGCTTACCTAC-CAT-ACCGA-TTTTT--TGGTTTGGTTTTCGGGTTTGGTTAAATAATGTGTTATTATTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAATAATCAAGTTTGATGCCATAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGATTAAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAAA-GAAAAAAAAGGTTTTAAAACTGGTACATTATATCGACGAGTTa
gi|2 : TCGGTAAAACGTAGGGGGTCACTATGCAATGTA-TATTTTACATTAAAACCATA----AA-----TAC--CTACCATATGTTTCCAAAGATAGTTGTTTACATGATT-TTA-ATCTTCTTTTTCTCTTTAAAATG-TTTTCTTTTATGAAAAAattatatcggtaaaacgtagggggtcactatgcaatgtatattttacattaaaaccataaatacctaccatatgtttccaaagatagttgtttacatgattttaatcttctttttctctttaaaatgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccgacactgtattgcacagcagtccccataatggtcagattgataactcgcataacaacaaacacgacagtacaaaaataaacaacatgtacatgtcgtttcaaagacaatttcgatctttcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcgtgctcggccattcgcttttgttttaaagaatcttatgttaaatgcctgtggtcagccttcttgacaagtggaattcatttagagtacaaccaatttcaacgatacacacagtgtgtgaatcatgtcgacctatttactggctcatattaactgacctttatggtgccgcgaagcatagcatacaaaaaagttcttgacttccgtacctttttttgc
gi|2 : aggatatatattactcttcgaagaatttaataagtggtatattacactgaattgcactactgcccaaaccatgttgatgatatacattttagccaacagttgctctatgtttggcaagtcgattggatgttgttgggattttaaaaaaaatgcttacctaccataccgattttttggtttggttttcgggtttggttaaataatgtgttattatttattattctggtcgagtcgtgttgtaaaataatcaagtttgatgccatagtcactttttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagggtgactttttgaaagaaaaaaaaggttttaaaactggtacattatatcgacgagttattataCCCGACACTGTATTGCACAGCAGTCCCCATAATGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAAAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCTTT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAATCTTATGTTAAATGCCTGTGGTCA--GCCTTCTTGACAAGTGGAATTCATTTAGAGTACA-----ACCAATTTCAACGATACACACAGT-GTGTGAATCATGTCGACCTATTTACTGGCTCATATTAACTGACCTTTATGGTGCCGCGAAGCATAGCATACAAAAAAGTTCTTGACTTCCGTACC-TTTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccgacactgtattgcacagcagtccccataatggtcagattgataactcgcataacaacaaacacgacagtacaaaaataaacaacatgtacatgtcgtttcaaagacaatttcgatctttcattaaaattatgttttcaataagcttacaactaggttgcacgtttgtgtatagtattcgtgctcggccattcgcttttgttttaaagaatcttatgttaaatgcctgtggtcagccttcttgacaagtggaattcatttagagtacaaccaatttcaacgatacacacagtgtgtgaatcatgtcgacctatttactggctcatattaactgacctttatggtgccgcgaagcatagcatacaaaaaagttcttgacttccgtacctttttttgc
gi|20 : aggatatatattactcttcgaagaatttaataagtggtatattacactgaattgcactactgcccaaaccatgttgatgatatacattttagccaacagttgctctatgtttggcaagtcgattggatgttgttgggattttaaaaaaaatgcttacctaccataccgattttttggtttggttttcgggtttggttaaataatgtgttattatttattattctggtcgagtcgtgttgtaaaataatcaagtttgatgccatagtcactttttcggcagaatattgaattattctctgattaaacaagttatttgtaatagcaagggtgactttttgaaagaaaaaaaaggttttaaaactggtacattatatcgacgagttattatatcggtaaaacgtagggggtcactatgcaatgtatattttacattaaaaccataaatacctaccatatgtttccaaagatagttgtttacatgattttaatcttctttttctctttaaaatgttttcttttatgaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaAACATGTACAAGTCGTATTAAAGACCATTTCGATCTAT--CATTAAAATTATGTTTTTAATAAGCTTACCACTAGGT--TGCACGCTTGTGTATAGTATTCGTGCTCGGCCATTCGCTTTTGTTT-----------------GATGCCTGT--TTAACACATTCTTGACAGGTGAAATTCAATTAGAATACA-----AGCGATTTCAACTATACACACATT-GTGTG-ATCTTgc
gi|21 : AAACATGACAGTACAAGAATAAACAACATGCACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTATGTTTTCAATAAGCTTACAACTAGGT--TGCATGTTTGTGTATAGTATTCGTGCTCGGCCATTTGCTTTTG-----AAGAAGCTTATGTTGAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAATTAGAGTACA-----AGCGATTTCAagcatacaaacaaaatcttaactcttttttttgcta
gi|22 : GT--TTAACACCTTCACGACAAGTGGAATTCAGTTGGAGTACA-----AGTGATTTCAACTATACACACTGT-ATGTG-ATCTTGTTGACCTGTTAACTGGTTCATATGAAGTGACCTTTACGGTGCCGCGAAGCATAGTATACAAAAACGTTCTTGACTTCCGTACC-TTTTTTTTGC
gi|24 : GATGTT-A---ACTTTAGCCAA-AATTGCTTT-TTTTGGATCAGCAGTTTATG-----AGAGGTTGGGGTGGAGC-AAT-AAAAAAAAGTATTTGCTTACCTACTTAATACTCA-TTTTTTCAAAGAGGG---TTGGGTTTGGGTAA----------ATTGTTTATTAA-TTCTG
gi|25 : CCAT--CCTCAACATTATATTTT-----ACC---CCATTCGGTCTTCTACGTTTGTGTGCAGTATTCGTGCTCGGCCATTCGCTTTTGTTTTAAAA-----------AAATGCCACT--TAAACACCTTCATGACAAGTGGAATTCAATAAGAGTACA-----GGCGATTTCAACCATACACcattaatcaaat
gi|26 : ATGCACATGGTTGTACATTTTAGCCAATAGTGGCTCTGTATTGGA-TA--CGTGGGTTATAACAGGTGAA--GTT---AT-TGC-AATAAAAA-----CGTTTTCCTAC-CGA-CATGA-TTTTT---AAGAGGA---ACCGGTAAGCGCAAACAAt
gi|27 : tgATTCATT-T-TTCTGGTAGAGTTGTGTTTTAAACTAATCAAGTTTGATGCTGTAGTCATTGTTT-CTGCAGAATATTG-AACTATTCTCTGACTGAA
gi|28 : tgtaCATAATACCGACGAGTTTGTTGTAAACTTT-------ATT---------------TGTT-GTTAA--CGTA-GGGGTCACTACAAAATTTATTATTCT
gi|29 : CCCAAGATAGTTGTTTACATAGTT-TTA-ATCTTATTTTTCTTTTTATATTG-TTTTCTTTGATGGA
gi|3 : aAGTAA-ATATTACACTGAATTGCA--------------------------------TAGATTTTAGCCAAAAGTTTCTCTATGTTGGG-CA--AGTCGATT-----GGGCATT--GTTGGGAT-TAT--AAAAAAA-----TGCTTACCTAC-CAA-ACCGATTTTTT--AAAGAGGG---TCGGGTTTTGATAAACAATGTGTTATTATTAATT-G-TTCTGGTCGAGTCGTATTGTAAAGTAATCAAGTTCGATGCCGTAATCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGATTGAACA-AGTTATTTGTAATAACAAGGGTGACTTTTAGAGA-GAAATAAAGG--TTTAAAATTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGAATTCACAACCCTATTCAATAAAACGTA-ATGGTCACTATAAAATGTA-TATTTCACATTAAAACCATA----TA-----TAC--TTACCATAAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTCTCTTTCTCTTTATATTA-TTTTCTTTTATAGAAAA
gi|3 : CCCAACTCTGTATTGTACGGAAGTCCC-ATAATGGTCAGATTGATAACTCGCATAACAACAAACACGATAGTACAAGAATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTGTGTTTTCAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGCCATTCTTTTTTATTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGACAAGTGGAATTCAGTTAGGGTACA-----AGGGATTTCAACTATACACACAGT-GTGTG-ATTTTGTCGACCTATTTACTGGCTCATATTACGTGACCATTACGGTGCCGCGAAGCATAGTATACAAAAACGTTCTTGACTTCCGAACCATTTTTTTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccaactctgtattgtacggaagtcccataatggtcagattgataactcgcataacaacaaacacgatagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagtcttcgtgctcggccattcttttttattttaaagaagcttatgttaaatgcctgtttaacaccttcatgacaagtggaattcagttagggtacaagggatttcaactatacacacagtgtgtgattttgtcgacctatttactggctcatattacgtgaccattacggtgccgcgaagcatagtatacaaaaacgttcttgacttccgaaccatttttttttt
gi|4 : agtaaatattacactgaattgcatagattttagccaaaagtttctctatgttgggcaagtcgattgggcattgttgggattataaaaaaatgcttacctaccaaaccgattttttaaagagggtcgggttttgataaacaatgtgttattattaattgttctggtcgagtcgtattgtaaagtaatcaagttcgatgccgtaatcactttttcggcagaatattgaattattctctgattgaacaagttatttgtaataacaagggtgacttttagagagaaataaaggtttaaaattggtacataatatcgacgagtttgttgtaaactttgggatgaattcagaattcacaaccctattcaataaaacgtaatggtcactataaaatgtatatttcacattaaaaccatatatacttaccataagttcccaaagatagttgtttacacgattttaatcttctctttctctttatattattttcttttatagaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaGAATTTAATAAGTGATACATTACACTGAATTGCACT-----ACTGCCCAAACCATGCTGATGAT-ATACATTTTAGCCAACAATTGCTCTTTGTTGGG-CA--AGTCAATT-----AGGCGTT--GTTGGGAT-TAT--AAATAAA-----TGCTTACCTAC-CAA-ACCGATTTTTT--AAAGAGGG---TCGGGTTTTGATAAACAATGTGTTATTATTTATT-G-TTCTGGTCGAATTGTGTTGTAAAGTAACCAAGTTTGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGACTGAACA-AGTAATTTGAAATTGCAAGGGTGACATTTTGAGA-GAAAAAAAGGA-TTTAAAACTTGTACATTATATCAACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCCTTTTCGGTAAAACGTA-TGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATAATATTA-----TACAACTACCATAAGTT-----------------------TT-TC---TCTT---TCTC--TTTATATTG-TTTTCTTTTATGAAAAAtt
gi|4 : CCCAACTCTGTATTGTACAGAAGTCCCCATACTGGTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATAAACAACATGTACATGTCGTTTCAAAGACAATTTCAACCCAT--CATTAAAATTGTGTTTTCAATAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTCTTCGTGCTCGGTCATACGCTTTTGTTTTAAAGAAGCTTATGTTAAATGCCTGT--TTAACACCTTCATGATAAGTGGAATTCAGTCAGAGTACA-----AGCGATTTCAACTATACACACA---GTGTG-ATCTTGTCGACCTATTTACTGGCTCATATTAAGAGACCTTTACGGTGCCGCGAAGCATAGCATACAtgaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacccaactctgtattgtacagaagtccccatactggtcagattgataactcgcataacaacaaacacgacagtacaagaataaacaacatgtacatgtcgtttcaaagacaatttcaacccatcattaaaattgtgttttcaataagcttacaactaggttgcacgtttgtgtgtagtcttcgtgctcggtcatacgcttttgttttaaagaagcttatgttaaatgcctgtttaacaccttcatgataagtggaattcagtcagagtacaagcgatttcaactatacacacagtgtgatcttgtcgacctatttactggctcatattaagagacctttacggtgccgcgaagcatagcataca
gi|5 : gaatttaataagtgatacattacactgaattgcactactgcccaaaccatgctgatgatatacattttagccaacaattgctctttgttgggcaagtcaattaggcgttgttgggattataaataaatgcttacctaccaaaccgattttttaaagagggtcgggttttgataaacaatgtgttattatttattgttctggtcgaattgtgttgtaaagtaaccaagtttgatgccgtagtcactttttcggcagaatattgaattattctctgactgaacaagtaatttgaaattgcaagggtgacattttgagagaaaaaaaggatttaaaacttgtacattatatcaacgagtttgttgtaaactttgggatgaattcagacttcacaacccttttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccataatattatacaactaccataagtttttctctttctctttatattgttttcttttatgaaaaatgaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaAGGATATATATTACTTTTTGAAGAATTTGATAAGTGATATATTACACTGAATTGCA--------------------------------TACATTTTAGTCAAAAGTTACTCTATGTTGGA-CA--AGTCGATT-----GGGCGTT--GTTGGGAT-TATAAAAAAAAA-----TGCTTACCTAC-CAA-ATCGATTTTTT--AAAGAGA------GGGTTTTGATAAACAATGTGTTATTATTTATT-A-TTCTGGTCAAGTCGTGTTGTAAAGTAATCAAGTTCGA
gi|5 : tA-AGTTATTTGTAATAGCAAGAGTGACTTTTTGAGA-GAAATAATGG--TTTAAAATTGGTACATAATATCCACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCAAAACCCTCTTCGGTAAAACGTATGGG-TCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATCAGTTCCCAAAGATAGTTGTTTACACGATT-TTA-ATCTTATCTTTCTCTTTATATTGTTTTTCTTTTATGGAAAAagttatttgtaatagcaagagtgactttttgagagaaataatggtttaaaattggtacataatatccacgagtttgttgtaaactttgggatgaattcagacttcaaaaccctcttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccatatatacctaccatcagttcccaaagatagttgtttacacgattttaatcttatctttctctttatattgtttttcttttatggaaaatgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagacccaactctgtattgtacggaagtacccataatgctcagattgataactcgcataacaacaaacacgacagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagttttcgtgctcggccattcgcttttgttttaaagaagcttatattaaatgcctgtttaacaccttcatgacaagtggtcagttagagtacaagtgatttcaactatacacacagtgtgtgttcttgtcgacctatttactggctcatattacgtgacctttacggtgccgcgaaacatagtatacaaaaatgttcttgacttccgaaccgttttttt
gi|5 : taggatatatattactttttgaagaatttgataagtgatatattacactgaattgcatacattttagtcaaaagttactctatgttggacaagtcgattgggcgttgttgggattataaaaaaaaatgcttacctaccaaatcgattttttaaagagagggttttgataaacaatgtgttattatttattattctggtcaagtcgtgttgtaaagtaatcaagttcgCCCAACTCTGTATTGTACGGAAGTACCCATAATGCTCAGATTGATAACTCGCATAACAACAAACACGACAGTACAAGAATTAACAACATGTACATGTCGTTTCAAAGACAATTTCGATCCAT--CATTAAAATTGTGTTTTCAACAAGCTTACAACTAGGT--TGCACGTTTGTGTGTAGTTTTCGTGCTCGGCCATTCGCTTTTGTTTTAAAGAAGCTTATATTAAATGCCTGT--TTAACACCTTCATGACAAGTGG---TCAGTTAGAGTACA-----AGTGATTTCAACTATACACACAGT-GTGTG-TTCTTGTCGACCTATTTACTGGCTCATATTACGTGACCTTTACGGTGCCGCGAAACATAGTATACAAAAATGTTCTTGACTTCCGAACC-GTTTTTTTtgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagacccaactctgtattgtacggaagtacccataatgctcagattgataactcgcataacaacaaacacgacagtacaagaattaacaacatgtacatgtcgtttcaaagacaatttcgatccatcattaaaattgtgttttcaacaagcttacaactaggttgcacgtttgtgtgtagttttcgtgctcggccattcgcttttgttttaaagaagcttatattaaatgcctgtttaacaccttcatgacaagtggtcagttagagtacaagtgatttcaactatacacacagtgtgtgttcttgtcgacctatttactggctcatattacgtgacctttacggtgccgcgaaacatagtatacaaaaatgttcttgacttccgaaccgttttttt
gi|6 : taggatatatattactttttgaagaatttgataagtgatatattacactgaattgcatacattttagtcaaaagttactctatgttggacaagtcgattgggcgttgttgggattataaaaaaaaatgcttacctaccaaatcgattttttaaagagagggttttgataaacaatgtgttattatttattattctggtcaagtcgtgttgtaaagtaatcaagttcgaagttatttgtaatagcaagagtgactttttgagagaaataatggtttaaaattggtacataatatccacgagtttgttgtaaactttgggatgaattcagacttcaaaaccctcttcggtaaaacgtatgggtcactataaaatgtatattttacattaaaaccatatatacctaccatcagttcccaaagatagttgtttacacgattttaatcttatctttctctttatattgtttttcttttatggaaaatgaatacatgttcatgtaaatagacaatatttaagtctttttattgacagaagtcgccttaaaatggcaaatatagacttatttgttttactttgattgagaaacatttgcttataacagatcatgctcgaagaatttttgcaaagatccagtactaagcttatacggataaagtgtcttgcttaaggacccaacagaAGGATATATATTACTTTTCGAAGAATTTAATAAGTGATATATTACACTGAATTGCGCT-----ACT--TCAAACCATGCTGATGAT-ATACA-TTTAGCCAACAATTGCTCTATGTTGGG-CA--AGTCGATT-----TTACGTT--GTTTGGAT-TTT-TAAAAAAA-----TACTTACCTAC-CAA-ACCGATTTTTT--AAAGATGG---TCGGGTTTGGATAAACGATGTGTTATTGTTTATT-A-TTCTGGTCGAGTCGTGTTGTAAAGTAATCAAGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATACTG-AATTATTCTCTTACTAAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTT--GA-TAAAAAAAAGGTTTTAAAACCGGTTAATAATATCGACGAGTTTGTTGTTAACTTTGGAATGAATTCAGACTTCACAACCTTCTTCTATAAAACGTA--GGGTTACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATGAGTTCCCAAAGATAGTTGTTTACACGACT-TTA-ATCTTCTTTTTCTCTTTATATTT-TTTTTCTT
gi|7 : tAGGATATATGTTACTTTTCGAAGAATTT-----GTGATATATTACACTAAATTGCA--------------------------------TACATTTTAGCCAAAAGTTACTCTATGTTGGA-CA--AGTCGATT-----GGGCATT--GTTGGGAT-TAT-AAAAAAAAA----TGCTTACCTAC-CAA-ACCGA-TTTTTT-AAAGAGGG---TTGGGTTTTGATAAACGATGTGTTATTATTTATT-A-TTCTGGTCCAGTCGTGTTGTAAAGTAATCAGGTTCGATGCCGTAGTCACTTTTT-CGGCAGAATATTG-AATTATTCTCTGATTTAACA-AGTTATTTATAATAGCATGGGTGACTTTTTGAGA-GAAATAAAGG--TTTAAAATTGGTACATAATATCGACGAGTTTGTTGTAAACTTTGGGATGAATTCAGACTTCACAACCTTCTTCGGTAAAACGTA-TGGGTCACTATAAAATGTA-TATTTTACATTAAAACCATA----TA-----TAC--CTACCATAAGTTCCCAAAGATAGTTGTTTACAAGATT-TTA-ATCTTCTCTTTCTCTTTATATTG-TTTTCTTTTATGGA
gi|8 : tACTGAATTGCACTGAATTACTGTCCAAACCATGCTGATGAT-ATACATTTTAACCAACAGTTGCTGTATGTTGGG-CA--AATCGATT-----GGACATT--GTTGGGAT-TTT-AAAAAAA------TGCTAACCTAA-GAT-ACCGA-TTTTTT-AAAGAGGG---TTGGGTTTGAATAAACAATGTGCTATTGTTTATT-A-TTCTGGTCAATTTGTGTTGTAAAGTTATCAAGTTCGATGCTGTAGTTACTTTTTTCAGCAGAATATTG-AATTATTCTCTGATTAAACA-AGTTATTTGTAATAGCAAGGGTGACTTTTTGAGGTGAAAAAAAAGGTTTTAAAACTGGTACATAATATCAATGAGTTTGTTGTAAACTTTGGAATGAATTCAGACTTCACAACTATCTTCAGTAAAACGTAGGGTGTCACTATAAAATGTA-TATTTTACATTAAAACCTTA----TA-----TAC--CTACCATAAAGTCCCAAAGATAGTTGTTTACACGATT-TAA-ATCTTCTTTTTCTCTTTAGATTG-TTTTCTTTTATG
gi|9 : GAATTTAATAAGTGATATATTACACTGAATTGCTCT-----ACTGCCCAAACCATGCTGATGAT-ATACATGTTAGCCAACAGTTGCTCTATGTTGAG-CA--AGACTATTT----GGGCGTT--GTTTGGTT-TAT-AAAAAAAT-----TGCTTACCTAC-CAA-ACCGAATTTTT--AAAGAGGG---TAGGGTTTTGATAAACAATGTACTATTATTTATT-A-TTCTGGTCGAGTCATGTTGTAAAGTAATCAAGTCTGATGCCGTAGTCACTTTTT-CGGCAGAATACTG-AATTATTCTCTGACTGAACA-AGTAATTTGTTATAGCA-------------------------AGGGT-----GACTGGTACATAATATCAACGATATTGTTGTAAACTTTGGGATGAATTCAGACTTATCAACTGTCTTCGTTAAAACGTA-TGGGTCACTATAAAATGTT-TAa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATGAAATTTATATTTGCAGAAGACATCAAATTGCCAGAGCTTCTACCAGTAGGTTGTCTAGCACACGGACTCGTGTTTTCACACTACATTGGTTTTCTGACATACGTTTTGCCAGGTAAATTAGAATTAAACACTTTTTGGACAGCTTTCATAAAAAGATAAAAAAAAAAAATATTCTTATTTATTTTACATTGATTGTGAAACATGTTCTTACAGATTAGACAAATCATGCTTGAAGTCTTCTTGGTTAGAACCAATACTAAGCATTTTGTGGATAAAGGACATCACACAAAGTCGTGGC
Unaligned ( gi|23 ): TTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|30 ): AGCATATGCGGATAAAGTCTATTGTCAAAGGATACCACAGACCAA