lowQualScore : 111111111111111111111111111111111111111111
lowQualScore : 1111 44444444444444444 111 111 1111111 1111111 11111 11111111111 333333333333333333333333333333333333333333 11111 222222222 11111 8888888888888888888 222
lowQualScore : 6 6 8 0 1 1111 55555555555555555 0 5 4 777 9999 666 3 3 77 3 1111111 4 2222222 00000 3 2 77777777777 3 3 1 99999 000000000000000000000000000000000000000000 2 2 555 2 2 1 3 11111 0 7 1 888888888 5 4 5 2 33 2 2 2 2 3 7 33 888888 333 2 2 4 666666 0 88888 2 1111111111111111111 111
lowQualScore : . . . . . .... ................. . . . ... .... ... . . .. . ....... . ....... ..... . . ........... . . . ..... .......................................... . . ... . . . . ..... . . . ......... . . . . .. . . . . . . .. ...... ... . . . ...... . ..... . ................... ...
lowQualScore : 0 0 3 7 0 3333 33333333333333333 7 7 3 999 4444 777 6 6 44 6 8888888 6 1111111 00000 6 0 44444444444 3 9 4 11111 999999999999999999999999999999999999999999 0 8 999 9 0 1 3 33333 6 7 9 222222222 0 5 0 9 33 9 9 7 5 8 1 11 444444 999 2 2 4 444444 8 99999 5 0000000000000000000 000
consensus : NAAATATTGATGCAAAGCATCAAAGTCGACTAGAATATATTGCATAGGATCCTTTNCAGGNTAATTTTT-TNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGACCT----CAG---A-TG-A--T-C---AGA-C-TGAGT-C-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGA----CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-TT--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGACCCC-----AAATAGANAAAAGTA--AACTTGATCAACACTTTCAATGCAT
Reference ( gi|2 ) : TAAATATTGATGTAAAGTAACAGAGTTAACTGGAATATATTGCACACGTTTGTTTGTA--TTGATTTTT-TCTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------AAACATAT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGACCT----CAG---ACTG-A-GT-C---AGA-C-TGAGT-C-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-TT--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGACCCC-----AAATAGACAAAA-TACTAA-TTGAT-GACCTTTTCACTTCATTCATACTCTTTCTAAGATGAAACAAGAGGTTGCCACTAACG
gi|28 : AAATATTGATGCAAAGCATCAAAGTCGATTGGAATATATTGCATA
gi|29 : aataAAATATTGATGCAAAGCATCAAAGTCAACAAGAATATATTGCATA
gi|1 : agaAAGCAACTGAAGTA--TAAAACATATTTCA-AGGATCCTTTCCAGGTTGATTTTT-TGGTTCT---TATT----TCT---AA-TTG-GGTT-TAACACG-ATTTTCA-------ACACATTT--CATGTTG-----TA----GACAT-------T---CAGTTTGTATTG-CGG-----AGAAAGACCT----CAG---A----------------------AT-C-AATCTTAGTAGAACCACCGTC-----------AA---GA-AAA-CATTTTCGCATAAAGTTTAAGGAT---CTAG-CGTGACTCG-TATATACGGTCTCGGCGGTGATA-GAG-CAACGT--TC-TG--GT--G---A---CGGC-GA-CT-CAGAT------CACTCGGCCATGCAACACCC
gi|4 : tttttgttagataaattattatcaaaagttagtatgatgtaagaggtggccgttatgtgtttgaatatatattgatacatactaatgctaagactttaaaaatggtactagaagcttcctcgcctgacgctcagcatttagagaagagttctaggtctggtcagcccagtgtcagtataatgtgactgggcggggtatcataccatgtgtttgcggcatgatactctagtgtgacagcgcttagaatactgtctcaagtagacaccgtcgcgatatgacttaaaaattgttaaaagcgacgctaaacaccatactacaacaacatactaatgctgttgttttgatttgatatgaagaatgactgcaacgttatacagtgtataaacttatttttaaaaatcatatttTTGCA--GTAATTTTCATCTTTTG---TTT---------G-AA-TGG-GCTT-TATCGCC-ATTTCCA-------ATACATTT--CAAGTTA-----TATAT-AGTAT-A--T--C---CTATTT-TATTGGTGG-----AGGAAGACCC----TAG---AATG-A-AT-C---------------------TGAGTAGAACCGCCGTCCCTCCTCAGGTAAT-TGG-----------CACAT----TTTTT-------CG---CGGTACTCG-AACCTACGACCACAACGGTGAAA-G-G-TGC-ATGGTC-TT--GA--G---A---CGGC-GC-CT-TAGAA------AACTCGGCCACGGAGGACCCt
gi|16 : caattgctgcatgtttaaactcaatttcaaattgaacgtgatatttttattaaatcacaaactttttctaaactccaTAATTCTT-TCTTTTCGGCTTTTAATATCTTG-AAATGG-AGTT-AAACGCC-ACTTTCA-------AAACACA---AAGTTTATAATTTATAT-AGC-C-A--T------CAGTAT-GACTGGTAGTTGCCATGGAGACCC----Cgtcatcttatatgttagcgggacacacagaaacacaaagatacatgttc
gi|9 : TTTTT-TGTTTGT---TTGT----TTT---AA-TAA-GATG--AGCGCCCATATTCATCCCATCATAAATAT----GATTA-----AATATTGG----A--T--C---CAGTTT-TATCAGCAG-----AGGAATGCAT----CAA---A-TGCA-TT-C---AAATC-TGCAT-C---------CAGAATCACTAT--TT--ACAAGTAAT-TGG-AAT-TATTCCCCCATGAtg
gi|5 : TTT-TGTTTTG---TTTT----TTTTGGAA-TGG-GGTT-TAACGCC-ATTTTCA-------CCACATTT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGACCT----CAG-------------------A-C-TGAGT-C-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-TT--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGACCC
gi|3 : TTT-TATTCTT---TTTT----TTT---AA-TGG-GGTT-TAACGTT-ATTTTGA-------ACA-ATTT--TATGTTA-----TATAT-GACAT-A--T--C---CAGTTT-TATAGGTGG-----AGGAATACCT------------------------------------C-AGA-------AAACCACCGCACTTCCGCAAGTAAC-TGGCAAA-CTTTCTCACATAAATTTTTTGGAG---CGAG-CGGGAAACG-AACCTGCGACCTTAGCAGTGAGA-G-G-TAA-GTGATC-TT--GA--C---A---CGGC-AA-CT-TTGAC------CACTCGGCCACGG-GTACCCT-----Aacgtgttaaaatgtataaatgccataaatagtttgtaaaatttgcatttttgtttacaaatgcaaacttagaagatataatcgttgacaat
gi|8 : taacttttttaataaaTCT-TCTTTTTAA-TATT----TTTTT-AA-TGG---TTGCATCGTT-GTTTTCG-------AAACATAA--CGTATTA-----TATA---GTAT-AG-TAAC---CAGTTT-AATCATTAC-----AGGAAGGCTT----TTG---A-TGCA-TT-CCTGAGA-C-TGAATAC-A---TAAATAACGCTACCATGATTACGCAAGGTAC-TGG-CAG-CTTtttttgaataaaactaaaacatcgtgtattgttttgttttacaattttgattccaagttctaagttaaattaacattttaagttgtactaatgtacatatatgagatccgatttttcaatataaataaaacatttttattaaaaaca
gi|31 : TTT----TTTTG-AA-TGA-GGTT-TAAAGCT-ATTTTCA-------AAACAT
gi|30 : T----TTTGG-AG-TGG-GTTT-TAACACC-ATTTTCA-------ATACATTT--C
gi|27 : G-GA-TGGAGGT---AACACC-ATATTCA-------AAACATATTATAGGTTA-----TATAT-GG--T-G--A--C---CAGTAT-TA
gi|19 : A-TTG-GGTT-AAACCCC-ATTT----------AAAC---T--CA-----------ATGC-AACAT-A--T--CAACCAGATT-TAATATCAG-----AGAAAGATAT----CGG---TCTG----T-T---GGA-CATGAGT-C-----TGAGTAGAACCAGCGTt
gi|23 : GCTG-----CATAT-GGCAT-------T---AAGTTT-TATTGGTGG-----AGGTAGACCTTTCACAGGTAATTG-G----C---AAA-C-T---T-CAAGATTGAGTTGAAC
gi|17 : ATAT-GACACCAGTT--T---CAATTT-TATTGTTGG-----TGGAAGACCT----CAC---AATA-A-AT-C---------------C-AAATTAA--AG---CACTGTCCATCTGCTATTAAA-TGG-CA----TGCTCACATGAAATTTCTGAAC---CGA
gi|11 : g-A--T--C---CAGTTT-CATTGGTGA-----CTGAAGACTG----AAG---ACTT-AGGTAC---AGA-C-CAAGT-C-AGA------AGAACCACTGGCGTTTTAC-AGTAAC-C----AA-CTATGTCA
gi|7 : tgaattggatttcccattactatgcagccatgaagtatgtagtttaaacaaaacgcCTGAGTAGAACCAACATCCGTCCGCAA-TAACACGC-AAT-CCTTTTCACA------------------GAA-CG---CTTGTAAACTACAACCTCAATGTTGAGA-G-G-TAA-TTTGTCGTTAGGC--G---A---CAGC-GC-CT-TAGAC------CACTCTGCCGCGGAGGACC
gi|6 : ttagaatataattatatagtatgcctaactgtattggaaaagaaaaaaactcactacaaatTAAC-TGGCAAA-TTTTTT----TATAGTTT-----------------GGCTTG-AACCCACTACCACAGCAGTGAGA-T-G-TAA-GTGATC-TT--GA--G---A---TGGC-AC-CT-TAGACCACAGGCACTGGGCCTCAGAGGA-CCC-----ATGTAGACA
gi|14 : cttacaccagtatTAAC-TGGCAAA-CTTTCTCACAT-AAGTTTTTTTAC---CGAG-CTAGACTCA-A-----------------TGAGA-G-G-AAT-GTATTCATT--AAACG---A---CGAC-GT-CT-TAGAA------CATTTGGCGACAGAGGATTCCGTA--AAAGAGAGATAA-TAtacatctaaatatgtccactttgtaaatgacctccataaacatttcaagatttttttattttgatacaaat
gi|15 : AGC-TGG-AAGGCTTCCTCACATGAAAAATCCGAAGTACCCAGACGGTATTTG-AACCCAC------AGCGGTGAGG-G-GCTGA-GAGTTT-AC--AA--GTCCA---TGAC--C-ATATAAAC------TGCTCGGCCACAGAGG-CCCC-----AAaatac
gi|10 : CCTGCGGTCATAGCGATGAGA-G-G-CAT-ATAGT--TT--GA--G---A---CAGCAGTGTT-TAGAC------GATTCGGCAACAAAGAAACCC-----
gi|20 : aggaatatcttaaaatgaatctctgaagaaccattgtccgtcatcttctagtcatgttttgtttgccttagcttggttgccatCCATAG-----AGA-G-G-TGG-GTGGAC-TT--TA--G---A---CA-C-TT-CTGTATAC------CACTCGGTGACGGAGGA
gi|12 : CATTGCTGTGAGA-G-A-AGA-GCCATC-CT----------A---CAGC-AT-CT-TAGAC------AACTTGGCCATAGAGGATCCatcgcagcagcgtattaaaaagacataaat
gi|21 : tGGTGACATG-G-TAA-GTGGTCATT--AACCA---C---CAGC-GG-CT-CAGAC------CACTCAGCTACAGAtttttaaaaataaatgactctagaataggtgcaatttattgaatagtatacaacaaacataacatataactaaattgaaaat
gi|13 : tactgaatatttgtgaatttcaactgcaagGA-G-G-TAA-GTGGTT-TT--GA--GTGGA---CAAT-GT-CT-T-GAC------CACTCTGCCAGGGTGGACCCC-----A
gi|18 : A-G-G-TAA-ATGAGG-TT--GA--G---A---TGCC-GA-TC-TGGAC------CACTGGGCCAAGGCGGATCCC-----Agcagtgatgtaacatgtacatgtatattggggctgtaaaaatgccagtgtaacacaatatgtaaaatgtttacat
gi|26 : -TAA-GTGGTC-AT--TA--G---ATAGCAGC-GC-AT-TGAAC------CATTCGGCAATGGAGGACCCcaaggtattgtaatctaaatacaagtcatattttaaaataacattttatttgtt
gi|22 : AA-GTGCTG-TT--GA--G---A---CGGC-GC-CC-TAGAC------CATGTGATCACCGAGGGCCCCTGGTAAGATACACGAAttatattttaaaagtttaaat
gi|25 : -TT--CA--G---A---CGCT-GC-CT-TAGAC------CTCTCAGTCACAGAAAACTCtaagatgtatttgaaaaa
gi|24 : T--GA--A---A---CAAT-GC-CT-CCAAC------CACTCAGCCACAGGGGG-CTC-----AAATAGAGAAAAGTA--AACTTGATCAACACTTTCAATGCATtctttccaattgtacaaatgtaaatattctataaattt
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 222 111 111 1111111 11111111111 111111 111111111111111111111111111111111111 333333333 111 11 1 1
lowQualScore : 0 7 2 4 1 777 5 555 8888 000 3 3 66 3 0000000 1 2 999 88888 3 1 44444444444 2 3 77777 111111 6666 222222222222222222222222222222222222 2 1 0 3 99 66 9 0 666666666 4 2 4 1 2 2 2 2 0 6 2 22 777777 333 2 2 4 666666 666666 55 0 1 444 33 5 5 3 3 2
lowQualScore : . . . . . ... . ... .... ... . . .. . ....... . . ... ..... . . ........... . . ..... ...... .... .................................... . . . . .. .. . . ......... . . . . . . . . . . . .. ...... ... . . . ...... ...... .. . . ... .. . . . . .
lowQualScore : 7 0 5 0 0 333 9 666 5555 888 3 3 00 3 8888888 0 3 666 33333 1 4 99999999999 9 0 77777 999999 5555 222222222222222222222222222222222222 5 6 9 1 55 00 5 7 222222222 4 9 4 6 7 7 5 4 1 7 1 99 555555 777 1 1 2 111111 888888 00 8 0 000 88 0 0 0 0 5
consensus : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAGA-T--A-T---C----AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC--AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
Reference ( family-786 ) : NAAATATTGATGCAAAGCATCAAAGTCGACTAGAATATATTGCATAGGATCCTTTNCAGGNTAATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAGA-TG-A-T---C----AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGA----CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC--AAATAGANAAA-AGTA--AACTTGATCAACACTTTCAATGCAT
gi|1 : TAAAACATATTTCA-AGGATCCTTTCCAGGTTGATTTTTTGGTTCT---TATT----TCT---AA-TTG-GGTT-TAACACG-ATTTTCA-------ACACATTTCA--TGTTG-----TA----GACAT-------T---CAGTTTGTATTG-CGG-----AGAAAGAC------CT----CAGA----A-T---C----AA----------TC-----TTAGTAGAACCACCGTC-----------AA---GA-AAA-CATTTTCGCATAAAGTTTAAGGAT---CTAG-CGTGACTCG-TATATACGGTCTCGGCGGTGATA-GAG-CAACGT--TC-T-G--GT--G---A---CGGC-GA-CT-CAGAT------CACTCGGCCATGCAACAC------CC
gi|10 : tttttgttagataaattattatcaaaagttagtatgatgtaagaggtggccgttatgtgtttgaatatatattgatacatactaatgctaagactttaaaaatggtactagaagcttcctcgcctgacgctcagcatttagagaagagttctaggtctggtcagcccagtgtcagtataatgtgactgggcggggtatcataccatgtgtttgcggcatgatactctagtgtgacagcgcttagaatactgtctcaagtagacaccgtcgcgatatgacttaaaaattgttaaaagcgacgctaaacaccatactacaacaacatactaatgctgttgttttgatttgatatgaagaatgactgcaacgttatacagtgtataaacttatttttaaaaatcatatttaagcaactgaagtaCCTGCGGTCATAGCGATGAGA-G-G-CAT-ATAGT--T-T--GA--G---A---CAGCAGTGTT-TAGAC------GATTCGGCAACAAAGAAA------CCC--t
gi|11 : aggaatatcttaaaatgaatctctgaagaaccattgtccgtcatcttctagtcatgttttgtttgccttagcttggttgccat-A--T--C---CAGTTT-CATTGGTGA-----CTGAAGACTGAAGACT----TAGG-TA-------C----AGA-C-CA--AGTC-AGA------AGAACCACTGGCGTTTTAC-AGTAAC-C----AA-CTATGTCA
gi|12 : tgaattggatttcccattactatgcagccatgaagtatgtagtttaaacaaaacgcGCTGTGAGA-G-A-AGA-GCCATC-C-T----------A---CAGC-AT-CT-TAGAC------AACTTGGCCATAGAGGAT------CC
gi|13 : tcattGA-G-G-TAA-GTGGTT-T-T--GA--GTGGA---CAAT-GT-CT-T-GAC------CACTCTGCCAGGGTGGAC------CCC--Atttttaaaaataaatgactctagaataggtgcaatttattgaatagtatacaacaaacataacatataactaaattgaaaat
gi|14 : TAAC-TGGCAAA-CTTTCTCACAT-AAGTTTTTTTAC---CGAG-CTAGACTCA-A-----------------TGAGA-G-G-AAT-GTATTCAT-T--AAACG---A---CGAC-GT-CT-TAGAA------CATTTGGCGACAGAGGAT------TCCGTAAA-AGAGAGATAATA--AAgcagtgatgtaacatgtacatgtatattggggctgtaaaaatgccagtgtaacacaatatgtaaaatgtttacat
gi|15 : AGC-TGG-AAGGCTTCCTCACATGAAAAATCCGAAGTACCCAGACGGTATTTG-AACC------CACAGCGGTGAGG-G-GCTGA-G-AGTT-TAC--AA--GTCCA---TGAC--C-ATATAAAC------TGCTCGGCCACAGAGG-C------CCC--AAtac
gi|16 : TAATTCTTTCTTTTCGGCTTTTAATATCTTG-AAATGG-AGTT-AAACGCC-ACTTTCA-------AAACACA-AA--GTTTATAATTTATAT-AGC-C-A--T------CAGTAT-GACTGGTAGTTGCCATGGAGAC------CC----C
gi|17 : ATAT-GACACCAGTT--T---CAATTT-TATTGTTGG-----TGGAAGAC------CT----CA------------C----AA----TA--AATCCAAA-T---TA-AAGCACTGTCCATCTGCTATTAAA-TGG-CA----TGCTCACATGAAATTTCTGAA----Ctg
gi|18 : gA-G-G-TAA-ATGAGG-T-T--GA--G---A---TGCC-GA-TC-TGGAC------CACTGGGCCAAGGCGGAT------CCC--Acga
gi|19 : A-TTG-GGTT-AAACCCC-ATTT----------AAAC---TCA-------------ATGC-AACAT-A--T--CAACCAGATT-TAATATCAG-----AGAAAGAT------AT----CGGT-CT-G-T---T----GGA-CATG--AGTC-----TGAGTAGAACCAGCGTcaaggtattgtaatctaaatacaagtcatattttaaaataacattttatttgtt
gi|2 : AAATATTGATGTAAAGTAACAGAGTTAACTGGAATATATTGCACACGTTTGTTTGTA--TTGATTTTTTCTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------AAACATATCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAGACTG-AGT---C----AGA-C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC--AAATAGACAAA-A-TACTAA-TTGAT-GACCTTTTCACTTCAT
gi|20 : tGAGA-G-G-TGG-GTGGAC-T-T--TA--G---A---CA-C-TT-CTGTATAC------CACTCGGTGACGGAGGAtcatactctttctaagatgaaacaagaggttgccactaacg
gi|21 : ccataCAACTGCAAGGGTGACATG-G-TAA-GTGGTCAT-T--AACCA---C---CAGC-GG-CT-CAGAC------CACTCAGCTACAGAatcgcagcagcgtattaaaaagacataaat
gi|22 : tactgaatatttgtgaatttAA-GTGCTG-T-T--GA--G---A---CGGC-GC-CC-TAGAC------CATGTGATCACCGAGGGC------CCC--
gi|23 : GCTG-----CATAT-GGCATTA----------AGTTT-TATTGGTGG-----AGGTAGAC------CTTTCACAGG-TA-A-TTGGC----AAA-C-T-----TCAAGATTGAGTTGAACtggtaagatacacgaataagatgtatttgaaaaa
gi|24 : -T--GA--A---A---CAAT-GC-CT-CCAAC------CACTCAGCCACAGGGGGC------TC---AAATAGAGAAA-AGTA--AACTTGATCAACACTTTCAATGCAT
gi|25 : -T-T--CA--G---A---CGCT-GC-CT-TAGAC------CTCTCAGTCACAGAAAACTCTCTTTCC--AATTGTACAAA-TGTA--AA
gi|26 : -TAA-GTGGTC-A-T--TA--G---ATAGCAGC-GC-AT-TGAAC------CATTCGGCAATGGAGGAC------CCtattctataaattt
gi|27 : G-GA-TGGAGGT---AACACC-ATATTCA-------AAACATATTATAGGTTA-----TATAT-GG--T-G--A--C---CAGTAT-TATttatattttaaaagtttaaat
gi|28 : AAATATTGATGCAAAGCATCAAAGTCGATTGGAATATATTGCATA
gi|29 : aataAAATATTGATGCAAAGCATCAAAGTCAACAAGAATATATTGCATA
gi|3 : agaTTTTATTCTT---TTTT----TTT---AA-TGG-GGTT-TAACGTT-ATTTTGA-------ACA-ATTTTA--TGTTA-----TATAT-GACAT-A--T--C---CAGTTT-TATAGGTGG-----AGGAATAC------CT----CAGA----------------------------------------AAACCACCGCACTTCCGCAAGTAAC-TGGCAAA-CTTTCTCACATAAATTTTTTGGAG---CGAG-CGGGAAACG-AACCTGCGACCTTAGCAGTGAGA-G-G-TAA-GTGATC-T-T--GA--C---A---CGGC-AA-CT-TTGAC------CACTCGGCCACGG-GTAC------CCT--A
gi|30 : taacttttttaataaaT----TTTGG-AG-TGG-GTTT-TAACACC-ATTTTCA-------ATACATTTCtttttgaataaaactaaaacatcgtgtattgttttgttttacaattttgattccaagttctaagttaaattaacattttaagttgtactaatgtacatatatgagatccgatttttcaatataaataaaacatttttattaaaaaca
gi|31 : TTT----TTTTG-AA-TGA-GGTT-TAAAGCT-ATTTTCA-------AAACAT
gi|4 : TCCATTGCAG--TAATTTTCA----TC---TTTT----GTTTG-AA-TGG-GCTT-TATCGCC-ATTTCCA-------ATACATTTCA--AGTTA-----TATAT-AGTAT-A--T--C---CTATTT-TATTGGTGG-----AGGAAGAC------CC----TAGA-----------------A---TG--AATC-----TGAGTAGAACCGCCGTCCCTCCTCAGGTAAT-TGG-----------CACAT----TTTTT-------CG---CGGTACTCG-AACCTACGACCACAACGGTGAAA-G-G-TGC-ATGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAA------AACTCGGCCACGGAGGAC------CC
gi|5 : caattgctgcatgtttaaactcaatttcaaattgaacgtgatatttttattaaatcacaaactttttctaaacTTTTGTTTTG---TTTT----TTTTGGAA-TGG-GGTT-TAACGCC-ATTTTCA-------CCACATTTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAGA-------------------C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCgtcatcttatatgttagcgggacacacagaaacacaaagatacatgttc
gi|6 : TAAC-TGGCAAA-TTTTTTTATA----GTTT-----------------GGCTTG-AACCCACTACCACAGCAGTGAGA-T-G-TAA-GTGATC-T-T--GA--G---A---TGGC-AC-CT-TAGACCACAGGCACTGGGCCTCAGAGGA-------CCC--ATGTAGACAacgtgttaaaatgtataaatgccataaatagtttgtaaaatttgcatttttgtttacaaatgcaaacttagaagatataatcgttgacaat
gi|7 : cttacaccagtat-----TATAT-AGTAT-G--C--C---TAACTG-TATTGGAAA-----AGAAAAAAA-----CT----CA---------------------C-TACAAATC-----TGAGTAGAACCAACATCCGTCCGCAA-TAACACGC-AAT-CCTTTTCACA------------------GAA-CG---CTTGTAAACTACAACCTCAATGTTGAGA-G-G-TAA-TTTGTCGT-TAGGC--G---A---CAGC-GC-CT-TAGAC------CACTCTGCCGCGGAGGAC------Ctacatctaaatatgtccactttgtaaatgacctccataaacatttcaagatttttttattttgatacaaat
gi|8 : ttagaatataatTCTTCTTTTTAA-TATT----TTTTT-AA-TGG---TTGCATCGTT-GTTTTCG-------AAACATAACG--TATTA-----TATA---GTAT-AG-TAAC---CAGTTT-AATCATTAC-----AGGAAGGC------TT----TTGA-TGCA-T---TCCTGAGA-C-TG--AAT--ACA-TAAATAACGCTACCATGATTACGCAAGGTAC-TGG-CAG-CTT
gi|9 : TTTTTTGTTTGT---TTGT----TTT---AA-TAA-GATG--AGCGCCCATATTCATCCCATCATAAATAT----GATTA-----AATATTGG----A--T--C---CAGTTT-TATCAGCAG-----AGGAATGC------AT----CAAA-TGCATT---C----AAATC-TG--CATC---------CAGAATCACTAT--TT--ACAAGTAAT-TGG-AAT-TATTCCCCCATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 22 111 1111111 11111111111 111111 0000000000000000000000000000000000000 111111111 11111 111 11 1 1
lowQualScore : 0 3 1 1 00 33 1 888 8888 3 555 3 3 66 3 0000000 1 2 999 88888 3 1 44444444444 2 3 77777 111111 6666 9999999999999999999999999999999999999 2 1 0 3 99 66 9 0 999999999 4 2 4 1 2 2 2 2 0 6 2 22 777777 333 2 2 4 666666 666666 44444 222 33 5 5 1 1 1
lowQualScore : . . . . .. .. . ... .... . ... . . .. . ....... . . ... ..... . . ........... . . ..... ...... .... ..................................... . . . . .. .. . . ......... . . . . . . . . . . . .. ...... ... . . . ...... ...... ..... ... .. . . . . .
lowQualScore : 7 8 0 0 00 55 0 888 5555 8 666 3 3 00 3 8888888 0 3 666 33333 1 4 99999999999 9 0 77777 999999 5555 5555555555555555555555555555555555555 5 6 9 1 55 00 5 7 777777777 4 9 4 6 7 7 5 4 1 7 1 99 555555 777 1 1 2 111111 888888 11111 000 88 0 0 0 0 0
consensus : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTGTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-AT---G---T---C---AGA-C-TGAGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
Reference ( family-786 ) : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-AT---A---T---C---AGA-C-TGAGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
gi|1 : AACATATTTCA-AGGATCCTTTCCAGGTTGATTTTTTGGTTCT---TATT----TCT---AA-TTG-GGTT-TAACACG-ATTTTCA-------ACACATTTCA--TGTTG-----TA----GACAT-------T---CAGTTTGTATTG-CGG-----AGAAAGAC------CT----CAG-A----A---T---C---AA--------TC-----TTAGTAGAACCACCGTC-----------AA---GA-AAA-CATTTTCGCATAAAGTTTAAGGAT---CTAG-CGTGACTCG-TATATACGGTCTCGGCGGTGATA-GAG-CAACGT--TC-T-G--GT--G---A---CGGC-GA-CT-CAGAT------CACTCGGCCATGCAACAC------CC
gi|10 : tttttgttagataaattattatcaaaagttagtatgatgtaagaggtggccgttatgtgtttgaatatatattgatacatactaatgctaagactttaaaaatggtactagaagcttcctcgcctgacgctcagcatttagagaagagttctaggtctggtcagcccagtgtcagtataatgtgactgggcggggtatcataccatgtgtttgcggcatgatactctagtgtgacagcgcttagaatactgtctcaagtagacaccgtcgcgatatgacttaaaaattgttaaaagcgacgctaaacaccatactacaacaacatactaatgctgttgttttgatttgatatgaagaatgactgcaacgttatacagtgtataaacttatttttaaaaatcatatttaagcaactgaagtataaCCTGCGGTCATAGCGATGAGA-G-G-CAT-ATAGT--T-T--GA--G---A---CAGCAGTGTT-TAGAC------GATTCGGCAACAAAGAAA------CCC-----t
gi|11 : aggaatatcttaaaatgaatctctgaagaaccattgtccgtcatcttctagtcatgttttgtttgccttagcttggttgccat-A--T--C---CAGTTT-CATTGGTGA-----CTGAAGACTGAAGACT----TAG-GT---A-------C---AGA-C-CAAGTC-AGA------AGAACCACTGGCGTTTTAC-AGTAAC-C----AA-CTATGTCA
gi|12 : tgaattggatttcccattactatgcagccatgaagtatgtagtttaaacaaaacgcGCTGTGAGA-G-A-AGA-GCCATC-C-T----------A---CAGC-AT-CT-TAGAC------AACTTGGCCATAGAGGAT------CC
gi|13 : tcattGA-G-G-TAA-GTGGTT-T-T--GA--GTGGA---CAAT-GT-CT-T-GAC------CACTCTGCCAGGGTGGAC------CCC-----Atttttaaaaataaatgactctagaataggtgcaatttattgaatagtatacaacaaacataacatataactaaattgaaaat
gi|14 : TAAC-TGGCAAA-CTTTCTCACAT-AAGTTTTTTTAC---CGAG-CTAGACTCA-A-----------------TGAGA-G-G-AAT-GTATTCAT-T--AAACG---A---CGAC-GT-CT-TAGAA------CATTTGGCGACAGAGGAT------TCCGT---AAA-AGAGAGATAATA--AAgcagtgatgtaacatgtacatgtatattggggctgtaaaaatgccagtgtaacacaatatgtaaaatgtttacat
gi|15 : AGC-TGG-AAGGCTTCCTCACATGAAAAATCCGAAGTACCCAGACGGTATTTG-AACC------CACAGCGGTGAGG-G-GCTGA-G-AGTT-TAC--AA--GTCCA---TGAC--C-ATATAAAC------TGCTCGGCCACAGAGG-C------CCC-----AAtac
gi|16 : TAATTCTTTCTTTTCGGCTTTTAATATCTTG-AAATGG-AGTT-AAACGCC-ACTTTCA-------AAACACA-AA--GTTTATAATTTATAT-AGC-C-A--T------CAGTAT-GACTGGTAGTTGCCATGGAGAC------CC----C
gi|17 : ATAT-GACACCAGTT--T---CAATTT-TATTGTTGG-----TGGAAGAC------CT----CA---------------C---AA----TAAATCCAAA-T---TA-AAGCACTGTCCATCTGCTATTAAA-TGG-CA----TGCTCACATGAAATTTCTGAAC---CGAtg
gi|18 : gA-G-G-TAA-ATGAGG-T-T--GA--G---A---TGCC-GA-TC-TGGAC------CACTGGGCCAAGGCGGAT------CCC-----A
gi|19 : A-TTG-GGTT-AAACCCC-ATTT----------AAAC---TCA-------------ATGC-AACAT-A--T--CAACCAGATT-TAATATCAG-----AGAAAGAT------AT----CGGTCT---G---T---T---GGA-CATGAGTC-----TGAGTAGAACCAGCGTcaaggtattgtaatctaaatacaagtcatattttaaaataacattttatttgtt
gi|2 : AAATATTGATGTAAAGTAACAGAGTTAACTGGAATATATTGCACACGTTTGTTTGTA--TTGATTTTTTCTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------AAACATATCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-ACTGAG---T---C---AGA-C-TGAGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-A-TACTAA-TTGAT-GACCTTTTCACTTCAT
gi|20 : tGAGA-G-G-TGG-GTGGAC-T-T--TA--G---A---CA-C-TT-CTGTATAC------CACTCGGTGACGGAGGAtcatactctttctaagatgaaacaagaggttgccactaacg
gi|21 : ccataCAACTGCAAGGGTGACATG-G-TAA-GTGGTCAT-T--AACCA---C---CAGC-GG-CT-CAGAC------CACTCAGCTACAGAatcgcagcagcgtattaaaaagacataaat
gi|22 : tactgaatatttgtgaatttAA-GTGCTG-T-T--GA--G---A---CGGC-GC-CC-TAGAC------CATGTGATCACCGAGGGC------CCCTGGTAAGATACACGAA-
gi|23 : GCTG-----CATAT-GGCATTA----------AGTTT-TATTGGTGG-----AGGTAGAC------CTTTCACAG-GTA--A---TTGGC---AAA-C-T---TCAAGATTGAGTTGAACtaagatgtatttgaaaaa
gi|24 : -T--GA--A---A---CAAT-GC-CT-CCAAC------CACTCAGCCACAGGGGGC------TC------AAATAGAGAAA-AGTA--AACTTGATCAACACTTTCAATGCAT
gi|25 : -T-T--CA--G---A---CGCT-GC-CT-TAGAC------CTCTCAGTCACAGAAAACTCTCTTTCC-----AATTGTACAAA-TGTA--AA
gi|26 : -TAA-GTGGTC-A-T--TA--G---ATAGCAGC-GC-AT-TGAAC------CATTCGGCAATGGAGGAC------CCtattctataaattt
gi|27 : G-GA-TGGAGGT---AACACC-ATATTCA-------AAACATATTATAGGTTA-----TATAT-GG--T-G--A--C---CAGTAT-TATttatattttaaaagtttaaat
gi|28 : AAATATTGATGCAAAGCATCAAAGTCGATTGGAATATATTGCATA
gi|29 : aataAAATATTGATGCAAAGCATCAAAGTCAACAAGAATATATTGCATA
gi|3 : agaTTTTATTCTT---TTTT----TTT---AA-TGG-GGTT-TAACGTT-ATTTTGA-------ACA-ATTTTA--TGTTA-----TATAT-GACAT-A--T--C---CAGTTT-TATAGGTGG-----AGGAATAC------CT----CAG-A---------------------------------------AAACCACCGCACTTCCGCAAGTAAC-TGGCAAA-CTTTCTCACATAAATTTTTTGGAG---CGAG-CGGGAAACG-AACCTGCGACCTTAGCAGTGAGA-G-G-TAA-GTGATC-T-T--GA--C---A---CGGC-AA-CT-TTGAC------CACTCGGCCACGG-GTAC------CCT-----A
gi|30 : taacttttttaataaaT----TTTGG-AG-TGG-GTTT-TAACACC-ATTTTCA-------ATACATTTCtttttgaataaaactaaaacatcgtgtattgttttgttttacaattttgattccaagttctaagttaaattaacattttaagttgtactaatgtacatatatgagatccgatttttcaatataaataaaacatttttattaaaaaca
gi|31 : TTT----TTTTG-AA-TGA-GGTT-TAAAGCT-ATTTTCA-------AAACAT
gi|4 : TAAACTCCATTGCAG-T--AATTTTCATCTTT---TGTT----T---G-AA-TGG-GCTT-TATCGCC-ATTTCCA-------ATACATTTCA--AGTTA-----TATAT-AGTAT-A--T--C---CTATTT-TATTGGTGG-----AGGAAGAC------CC----TAG-A------------------A---TGAATC-----TGAGTAGAACCGCCGTCCCTCCTCAGGTAAT-TGG-----------CACAT----TTTTT-------CG---CGGTACTCG-AACCTACGACCACAACGGTGAAA-G-G-TGC-ATGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAA------AACTCGGCCACGGAGGAC------CC
gi|5 : caattgctgcatgtttaaactcaatttcaaattgaacgtgatatttttattaaatcacaaactttttcTTTTGTTTTG---TTTT----TTTTGGAA-TGG-GGTT-TAACGCC-ATTTTCA-------CCACATTTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A--------------------C-TGAGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCgtcatcttatatgttagcgggacacacagaaacacaaagatacatgttc
gi|6 : TAAC-TGGCAAA-TTTTTTTATA----GTTT-----------------GGCTTG-AACCCACTACCACAGCAGTGAGA-T-G-TAA-GTGATC-T-T--GA--G---A---TGGC-AC-CT-TAGACCACAGGCACTGGGCCTCAGAGGA-------CCC-----ATGTAGACAacgtgttaaaatgtataaatgccataaatagtttgtaaaatttgcatttttgtttacaaatgcaaacttagaagatataatcgttgacaat
gi|7 : cttacaccagtat-----TATAT-AGTAT-G--C--C---TAACTG-TATTGGAAA-----AGAAAAAAA-----CT----CAC--T---A-------C---AAA-------TC-----TGAGTAGAACCAACATCCGTCCGCAA-TAACACGC-AAT-CCTTTTCACA------------------GAA-CG---CTTGTAAACTACAACCTCAATGTTGAGA-G-G-TAA-TTTGTCGT-TAGGC--G---A---CAGC-GC-CT-TAGAC------CACTCTGCCGCGGAGGAC------Ctacatctaaatatgtccactttgtaaatgacctccataaacatttcaagatttttttattttgatacaaat
gi|8 : ttagaatataatTTTTTAATATT---TTTT----T-----AA-T---GGTTGCATCGTT-GTTTTCG-------AAACATAACG--TATTA-----TATA---GTAT-AG-TAAC---CAGTTT-AATCATTAC-----AGGAAGGC------TT----TTG-AT---GCATT---CCTGAGA-C-TGAAT--ACA-TAAATAACGCTACCATGATTACGCAAGGTAC-TGG-CAG-CTT
gi|9 : tcttcTTTTTTGTTTGT---TTGT----TTT---AA-TAA-GATG--AGCGCCCATATTCATCCCATCATAAATAT----GATTA-----AATATTGG----A--T--C---CAGTTT-TATCAGCAG-----AGGAATGC------AT----CAA-AT---GCATT---C---AAATC-TGCATC---------CAGAATCACTAT--TT--ACAAGTAAT-TGG-AAT-TATTCCCCCATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 22 111 111 1111111 11111111111 111111 0000000000000000000000000000000000000000 111111111 11111 111 11 1 1
lowQualScore : 0 3 1 1 00 33 3 555 8888 333 3 3 66 3 0000000 1 5555 4 88888 3 1 44444444444 2 3 77777 111111 6666 8888888888888888888888888888888888888888 2 1 0 3 99 66 9 0 999999999 4 2 4 1 2 2 2 2 0 6 2 22 777777 333 2 2 4 666666 666666 44444 222 33 5 5 1 1 1
lowQualScore : . . . . .. .. . ... .... ... . . .. . ....... . .... . ..... . . ........... . . ..... ...... .... ........................................ . . . . .. .. . . ......... . . . . . . . . . . . .. ...... ... . . . ...... ...... ..... ... .. . . . . .
lowQualScore : 7 8 0 0 00 55 4 666 5555 222 3 3 00 3 8888888 0 1111 1 33333 1 4 99999999999 9 0 77777 999999 5555 1111111111111111111111111111111111111111 5 6 9 1 55 00 5 7 777777777 4 9 4 6 7 7 5 4 1 7 1 99 555555 777 1 1 2 111111 888888 11111 000 88 0 0 0 0 0
consensus : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
Reference ( family-786 ) : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTGTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
gi|1 : AACATATTTCA-AGGATCCTTTCCAGGTTGATTTTTTGGTTCT---TATT----TCT---AA-TTG-GGTT-TAACACG-ATTTTCA-------ACACATTT--CATGTTG-----TA----GACAT-------T---CAGTTTGTATTG-CGG-----AGAAAGAC------CT----CAG-A--------A---TC---AA----------TC-----TTAGTAGAACCACCGTC-----------AA---GA-AAA-CATTTTCGCATAAAGTTTAAGGAT---CTAG-CGTGACTCG-TATATACGGTCTCGGCGGTGATA-GAG-CAACGT--TC-T-G--GT--G---A---CGGC-GA-CT-CAGAT------CACTCGGCCATGCAACAC------CC
gi|10 : tttttgttagataaattattatcaaaagttagtatgatgtaagaggtggccgttatgtgtttgaatatatattgatacatactaatgctaagactttaaaaatggtactagaagcttcctcgcctgacgctcagcatttagagaagagttctaggtctggtcagcccagtgtcagtataatgtgactgggcggggtatcataccatgtgtttgcggcatgatactctagtgtgacagcgcttagaatactgtctcaagtagacaccgtcgcgatatgacttaaaaattgttaaaagcgacgctaaacaccatactacaacaacatactaatgctgttgttttgatttgatatgaagaatgactgcaacgttatacagtgtataaacttatttttaaaaatcatatttaagcaactgaagtataaCCTGCGGTCATAGCGATGAGA-G-G-CAT-ATAGT--T-T--GA--G---A---CAGCAGTGTT-TAGAC------GATTCGGCAACAAAGAAA------CCC-----t
gi|11 : aggaatatcttaaaatgaatctctgaagaaccattgtccgtcatcttctagtcatgttttgtttgccttagcttggttgccat-A--T--C---CAGTTT-CATTGGTGA-----CTGAAGACTGAAGACT----TAG-G----T---A----C---AGA-C-CA--AGTC-AGA------AGAACCACTGGCGTTTTAC-AGTAAC-C----AA-CTATGTCA
gi|12 : tgaattggatttcccattactatgcagccatgaagtatgtagtttaaacaaaacgcGCTGTGAGA-G-A-AGA-GCCATC-C-T----------A---CAGC-AT-CT-TAGAC------AACTTGGCCATAGAGGAT------CC
gi|13 : tcattGA-G-G-TAA-GTGGTT-T-T--GA--GTGGA---CAAT-GT-CT-T-GAC------CACTCTGCCAGGGTGGAC------CCC-----Atttttaaaaataaatgactctagaataggtgcaatttattgaatagtatacaacaaacataacatataactaaattgaaaat
gi|14 : TAAC-TGGCAAA-CTTTCTCACAT-AAGTTTTTTTAC---CGAG-CTAGACTCA-A-----------------TGAGA-G-G-AAT-GTATTCAT-T--AAACG---A---CGAC-GT-CT-TAGAA------CATTTGGCGACAGAGGAT------TCCGT---AAA-AGAGAGATAATA--AAgcagtgatgtaacatgtacatgtatattggggctgtaaaaatgccagtgtaacacaatatgtaaaatgtttacat
gi|15 : AGC-TGG-AAGGCTTCCTCACATGAAAAATCCGAAGTACCCAGACGGTATTTG-AACC------CACAGCGGTGAGG-G-GCTGA-G-AGTT-TAC--AA--GTCCA---TGAC--C-ATATAAAC------TGCTCGGCCACAGAGG-C------CCC-----AAtac
gi|16 : TAATTCTTTCTTTTCGGCTTTTAATATCTTG-AAATGG-AGTT-AAACGCC-ACTTTCA-------AAACACA---AAGTTTATAATTTATAT-AGC-C-A--T------CAGTAT-GACTGGTAGTTGCCATGGAGAC------CC----C
gi|17 : ATAT-GACACCAGTT--T---CAATTT-TATTGTTGG-----TGGAAGAC------CT----CA----------------C---AA----TA--AATCCAAA-T---TA-AAGCACTGTCCATCTGCTATTAAA-TGG-CA----TGCTCACATGAAATTTCTGAAC---CGAtg
gi|18 : gA-G-G-TAA-ATGAGG-T-T--GA--G---A---TGCC-GA-TC-TGGAC------CACTGGGCCAAGGCGGAT------CCC-----A
gi|19 : A-TTG-GGTT-AAACCCC-ATTT----------AAAC---T--CA-----------ATGC-AACAT-A--T--CAACCAGATT-TAATATCAG-----AGAAAGAT------AT----CGGTC----T---G---TT---GGA-CATG--AGTC-----TGAGTAGAACCAGCGTcaaggtattgtaatctaaatacaagtcatattttaaaataacattttatttgtt
gi|2 : AAATATTGATGTAAAGTAACAGAGTTAACTGGAATATATTGCACACGTTTGTTTGTA--TTGATTTTTTCTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------AAACATAT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A----CTGAG---TC---AGA-C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-A-TACTAA-TTGAT-GACCTTTTCACTTCAT
gi|20 : tGAGA-G-G-TGG-GTGGAC-T-T--TA--G---A---CA-C-TT-CTGTATAC------CACTCGGTGACGGAGGAtcatactctttctaagatgaaacaagaggttgccactaacg
gi|21 : ccataCAACTGCAAGGGTGACATG-G-TAA-GTGGTCAT-T--AACCA---C---CAGC-GG-CT-CAGAC------CACTCAGCTACAGAatcgcagcagcgtattaaaaagacataaat
gi|22 : tactgaatatttgtgaatttAA-GTGCTG-T-T--GA--G---A---CGGC-GC-CC-TAGAC------CATGTGATCACCGAGGGC------CCCTGGTAAGATACACGAA-
gi|23 : GCTG-----CATAT-GGCATTA----------AGTTT-TATTGGTGG-----AGGTAGAC------CTTTCACAG-GTAATT---G---GC---AAA-C-T-----TCAAGATTGAGTTGAACtaagatgtatttgaaaaa
gi|24 : -T--GA--A---A---CAAT-GC-CT-CCAAC------CACTCAGCCACAGGGGGC------TC------AAATAGAGAAA-AGTA--AACTTGATCAACACTTTCAATGCAT
gi|25 : -T-T--CA--G---A---CGCT-GC-CT-TAGAC------CTCTCAGTCACAGAAAACTCTCTTTCC-----AATTGTACAAA-TGTA--AA
gi|26 : -TAA-GTGGTC-A-T--TA--G---ATAGCAGC-GC-AT-TGAAC------CATTCGGCAATGGAGGAC------CCtattctataaattt
gi|27 : G-GA-TGGAGGT---AACACC-ATATTCA-------AAACATATTATAGGTTA-----TATAT-GG--T-G--A--C---CAGTAT-TATttatattttaaaagtttaaat
gi|28 : AAATATTGATGCAAAGCATCAAAGTCGATTGGAATATATTGCATA
gi|29 : aataAAATATTGATGCAAAGCATCAAAGTCAACAAGAATATATTGCATA
gi|3 : agaTTTTATTCTT---TTTT----TTT---AA-TGG-GGTT-TAACGTT-ATTTTGA-------ACA-ATTT--TATGTTA-----TATAT-GACAT-A--T--C---CAGTTT-TATAGGTGG-----AGGAATAC------CT----CAG-A------------------------------------------AAACCACCGCACTTCCGCAAGTAAC-TGGCAAA-CTTTCTCACATAAATTTTTTGGAG---CGAG-CGGGAAACG-AACCTGCGACCTTAGCAGTGAGA-G-G-TAA-GTGATC-T-T--GA--C---A---CGGC-AA-CT-TTGAC------CACTCGGCCACGG-GTAC------CCT-----A
gi|30 : taacttttttaataaaT----TTTGG-AG-TGG-GTTT-TAACACC-ATTTTCA-------ATACATTT--Ctttttgaataaaactaaaacatcgtgtattgttttgttttacaattttgattccaagttctaagttaaattaacattttaagttgtactaatgtacatatatgagatccgatttttcaatataaataaaacatttttattaaaaaca
gi|31 : TTT----TTTTG-AA-TGA-GGTT-TAAAGCT-ATTTTCA-------AAACAT
gi|4 : TAAACTCCATTGCAG-T--AATTTTCATCTTT---TGTT----T---G-AA-TGG-GCTT-TATCGCC-ATTTCCA-------ATACATTT--CAAGTTA-----TATAT-AGTAT-A--T--C---CTATTT-TATTGGTGG-----AGGAAGAC------CC----TAG-A-------------------A---TG--AATC-----TGAGTAGAACCGCCGTCCCTCCTCAGGTAAT-TGG-----------CACAT----TTTTT-------CG---CGGTACTCG-AACCTACGACCACAACGGTGAAA-G-G-TGC-ATGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAA------AACTCGGCCACGGAGGAC------CC
gi|5 : caattgctgcatgtttaaactcaatttcaaattgaacgtgatatttttattaaatcacaaactttttcTTTTGTTTTG---TTTT----TTTTGGAA-TGG-GGTT-TAACGCC-ATTTTCA-------CCACATTT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A---------------------C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCgtcatcttatatgttagcgggacacacagaaacacaaagatacatgttc
gi|6 : TAAC-TGGCAAA-TTTTTTTATA----GTTT-----------------GGCTTG-AACCCACTACCACAGCAGTGAGA-T-G-TAA-GTGATC-T-T--GA--G---A---TGGC-AC-CT-TAGACCACAGGCACTGGGCCTCAGAGGA-------CCC-----ATGTAGACAacgtgttaaaatgtataaatgccataaatagtttgtaaaatttgcatttttgtttacaaatgcaaacttagaagatataatcgttgacaat
gi|7 : cttacaccagtat-----TATAT-AGTAT-G--C--C---TAACTG-TATTGGAAA-----AGAAAAAAA-----CT----CA------------------------C-TACAAATC-----TGAGTAGAACCAACATCCGTCCGCAA-TAACACGC-AAT-CCTTTTCACA------------------GAA-CG---CTTGTAAACTACAACCTCAATGTTGAGA-G-G-TAA-TTTGTCGT-TAGGC--G---A---CAGC-GC-CT-TAGAC------CACTCTGCCGCGGAGGAC------Ctacatctaaatatgtccactttgtaaatgacctccataaacatttcaagatttttttattttgatacaaat
gi|8 : ttagaatataatTCTTCTTTTTAA-TATT----TTTTT-AA-TGG---TTGCATCGTT-GTTTTCG-------AAACATAA--CGTATTA-----TATA---GTAT-AG-TAAC---CAGTTT-AATCATTAC-----AGGAAGGC------TT----TTG-A----T---GCATTCCTGAGA-C-TG--AAT--ACA-TAAATAACGCTACCATGATTACGCAAGGTAC-TGG-CAG-CTT
gi|9 : TTTTTTGTTTGT---TTGT----TTT---AA-TAA-GATG--AGCGCCCATATTCATCCCATCATAAATAT----GATTA-----AATATTGG----A--T--C---CAGTTT-TATCAGCAG-----AGGAATGC------AT----CAA-A----T---GCATTC---AAATC-TG--CATC---------CAGAATCACTAT--TT--ACAAGTAAT-TGG-AAT-TATTCCCCCATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 22 111 1111111 11111111111 111111 0000000000000000000000000000000000000000 111111111 11111 111 11 1 1
lowQualScore : 0 3 1 1 00 33 1 888 8888 3 555 3 3 66 3 0000000 1 2 999 88888 3 1 44444444444 2 3 77777 111111 6666 8888888888888888888888888888888888888888 2 1 0 3 99 66 9 0 999999999 4 2 4 1 2 2 2 2 0 6 2 22 777777 333 2 2 4 666666 666666 44444 222 33 5 5 1 1 1
lowQualScore : . . . . .. .. . ... .... . ... . . .. . ....... . . ... ..... . . ........... . . ..... ...... .... ........................................ . . . . .. .. . . ......... . . . . . . . . . . . .. ...... ... . . . ...... ...... ..... ... .. . . . . .
lowQualScore : 7 8 0 0 00 55 0 888 5555 8 666 3 3 00 3 8888888 0 3 666 33333 1 4 99999999999 9 0 77777 999999 5555 1111111111111111111111111111111111111111 5 6 9 1 55 00 5 7 777777777 4 9 4 6 7 7 5 4 1 7 1 99 555555 777 1 1 2 111111 888888 11111 000 88 0 0 0 0 0
consensus : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTGTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
Reference ( family-786 ) : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
gi|1 : AACATATTTCA-AGGATCCTTTCCAGGTTGATTTTTTGGTTCT---TATT----TCT---AA-TTG-GGTT-TAACACG-ATTTTCA-------ACACATTTCA--TGTTG-----TA----GACAT-------T---CAGTTTGTATTG-CGG-----AGAAAGAC------CT----CAG-A--------A---TC---AA----------TC-----TTAGTAGAACCACCGTC-----------AA---GA-AAA-CATTTTCGCATAAAGTTTAAGGAT---CTAG-CGTGACTCG-TATATACGGTCTCGGCGGTGATA-GAG-CAACGT--TC-T-G--GT--G---A---CGGC-GA-CT-CAGAT------CACTCGGCCATGCAACAC------CC
gi|10 : tttttgttagataaattattatcaaaagttagtatgatgtaagaggtggccgttatgtgtttgaatatatattgatacatactaatgctaagactttaaaaatggtactagaagcttcctcgcctgacgctcagcatttagagaagagttctaggtctggtcagcccagtgtcagtataatgtgactgggcggggtatcataccatgtgtttgcggcatgatactctagtgtgacagcgcttagaatactgtctcaagtagacaccgtcgcgatatgacttaaaaattgttaaaagcgacgctaaacaccatactacaacaacatactaatgctgttgttttgatttgatatgaagaatgactgcaacgttatacagtgtataaacttatttttaaaaatcatatttaagcaactgaagtataaCCTGCGGTCATAGCGATGAGA-G-G-CAT-ATAGT--T-T--GA--G---A---CAGCAGTGTT-TAGAC------GATTCGGCAACAAAGAAA------CCC-----t
gi|11 : aggaatatcttaaaatgaatctctgaagaaccattgtccgtcatcttctagtcatgttttgtttgccttagcttggttgccat-A--T--C---CAGTTT-CATTGGTGA-----CTGAAGACTGAAGACT----TAG-G----T---A----C---AGA-C-CA--AGTC-AGA------AGAACCACTGGCGTTTTAC-AGTAAC-C----AA-CTATGTCA
gi|12 : tgaattggatttcccattactatgcagccatgaagtatgtagtttaaacaaaacgcGCTGTGAGA-G-A-AGA-GCCATC-C-T----------A---CAGC-AT-CT-TAGAC------AACTTGGCCATAGAGGAT------CC
gi|13 : tcattGA-G-G-TAA-GTGGTT-T-T--GA--GTGGA---CAAT-GT-CT-T-GAC------CACTCTGCCAGGGTGGAC------CCC-----Atttttaaaaataaatgactctagaataggtgcaatttattgaatagtatacaacaaacataacatataactaaattgaaaat
gi|14 : TAAC-TGGCAAA-CTTTCTCACAT-AAGTTTTTTTAC---CGAG-CTAGACTCA-A-----------------TGAGA-G-G-AAT-GTATTCAT-T--AAACG---A---CGAC-GT-CT-TAGAA------CATTTGGCGACAGAGGAT------TCCGT---AAA-AGAGAGATAATA--AAgcagtgatgtaacatgtacatgtatattggggctgtaaaaatgccagtgtaacacaatatgtaaaatgtttacat
gi|15 : AGC-TGG-AAGGCTTCCTCACATGAAAAATCCGAAGTACCCAGACGGTATTTG-AACC------CACAGCGGTGAGG-G-GCTGA-G-AGTT-TAC--AA--GTCCA---TGAC--C-ATATAAAC------TGCTCGGCCACAGAGG-C------CCC-----AAtac
gi|16 : TAATTCTTTCTTTTCGGCTTTTAATATCTTG-AAATGG-AGTT-AAACGCC-ACTTTCA-------AAACACA-AA--GTTTATAATTTATAT-AGC-C-A--T------CAGTAT-GACTGGTAGTTGCCATGGAGAC------CC----C
gi|17 : ATAT-GACACCAGTT--T---CAATTT-TATTGTTGG-----TGGAAGAC------CT----CA----------------C---AA----TA--AATCCAAA-T---TA-AAGCACTGTCCATCTGCTATTAAA-TGG-CA----TGCTCACATGAAATTTCTGAAC---CGAtg
gi|18 : gA-G-G-TAA-ATGAGG-T-T--GA--G---A---TGCC-GA-TC-TGGAC------CACTGGGCCAAGGCGGAT------CCC-----A
gi|19 : A-TTG-GGTT-AAACCCC-ATTT----------AAAC---TCA-------------ATGC-AACAT-A--T--CAACCAGATT-TAATATCAG-----AGAAAGAT------AT----CGGTC----T---G---TT---GGA-CATG--AGTC-----TGAGTAGAACCAGCGTcaaggtattgtaatctaaatacaagtcatattttaaaataacattttatttgtt
gi|2 : AAATATTGATGTAAAGTAACAGAGTTAACTGGAATATATTGCACACGTTTGTTTGTA--TTGATTTTTTCTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------AAACATATCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A----CTGAG---TC---AGA-C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-A-TACTAA-TTGAT-GACCTTTTCACTTCAT
gi|20 : tGAGA-G-G-TGG-GTGGAC-T-T--TA--G---A---CA-C-TT-CTGTATAC------CACTCGGTGACGGAGGAtcatactctttctaagatgaaacaagaggttgccactaacg
gi|21 : ccataCAACTGCAAGGGTGACATG-G-TAA-GTGGTCAT-T--AACCA---C---CAGC-GG-CT-CAGAC------CACTCAGCTACAGAatcgcagcagcgtattaaaaagacataaat
gi|22 : tactgaatatttgtgaatttAA-GTGCTG-T-T--GA--G---A---CGGC-GC-CC-TAGAC------CATGTGATCACCGAGGGC------CCCTGGTAAGATACACGAA-
gi|23 : GCTG-----CATAT-GGCATTA----------AGTTT-TATTGGTGG-----AGGTAGAC------CTTTCACAG-GTAATT---G---GC---AAA-C-T-----TCAAGATTGAGTTGAACtaagatgtatttgaaaaa
gi|24 : -T--GA--A---A---CAAT-GC-CT-CCAAC------CACTCAGCCACAGGGGGC------TC------AAATAGAGAAA-AGTA--AACTTGATCAACACTTTCAATGCAT
gi|25 : -T-T--CA--G---A---CGCT-GC-CT-TAGAC------CTCTCAGTCACAGAAAACTCTCTTTCC-----AATTGTACAAA-TGTA--AA
gi|26 : -TAA-GTGGTC-A-T--TA--G---ATAGCAGC-GC-AT-TGAAC------CATTCGGCAATGGAGGAC------CCtattctataaattt
gi|27 : G-GA-TGGAGGT---AACACC-ATATTCA-------AAACATATTATAGGTTA-----TATAT-GG--T-G--A--C---CAGTAT-TATttatattttaaaagtttaaat
gi|28 : AAATATTGATGCAAAGCATCAAAGTCGATTGGAATATATTGCATA
gi|29 : aataAAATATTGATGCAAAGCATCAAAGTCAACAAGAATATATTGCATA
gi|3 : agaTTTTATTCTT---TTTT----TTT---AA-TGG-GGTT-TAACGTT-ATTTTGA-------ACA-ATTTTA--TGTTA-----TATAT-GACAT-A--T--C---CAGTTT-TATAGGTGG-----AGGAATAC------CT----CAG-A------------------------------------------AAACCACCGCACTTCCGCAAGTAAC-TGGCAAA-CTTTCTCACATAAATTTTTTGGAG---CGAG-CGGGAAACG-AACCTGCGACCTTAGCAGTGAGA-G-G-TAA-GTGATC-T-T--GA--C---A---CGGC-AA-CT-TTGAC------CACTCGGCCACGG-GTAC------CCT-----A
gi|30 : taacttttttaataaaT----TTTGG-AG-TGG-GTTT-TAACACC-ATTTTCA-------ATACATTTCtttttgaataaaactaaaacatcgtgtattgttttgttttacaattttgattccaagttctaagttaaattaacattttaagttgtactaatgtacatatatgagatccgatttttcaatataaataaaacatttttattaaaaaca
gi|31 : TTT----TTTTG-AA-TGA-GGTT-TAAAGCT-ATTTTCA-------AAACAT
gi|4 : TAAACTCCATTGCAG-T--AATTTTCATCTTT---TGTT----T---G-AA-TGG-GCTT-TATCGCC-ATTTCCA-------ATACATTTCA--AGTTA-----TATAT-AGTAT-A--T--C---CTATTT-TATTGGTGG-----AGGAAGAC------CC----TAG-A-------------------A---TG--AATC-----TGAGTAGAACCGCCGTCCCTCCTCAGGTAAT-TGG-----------CACAT----TTTTT-------CG---CGGTACTCG-AACCTACGACCACAACGGTGAAA-G-G-TGC-ATGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAA------AACTCGGCCACGGAGGAC------CC
gi|5 : caattgctgcatgtttaaactcaatttcaaattgaacgtgatatttttattaaatcacaaactttttcTTTTGTTTTG---TTTT----TTTTGGAA-TGG-GGTT-TAACGCC-ATTTTCA-------CCACATTTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A---------------------C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCgtcatcttatatgttagcgggacacacagaaacacaaagatacatgttc
gi|6 : TAAC-TGGCAAA-TTTTTTTATA----GTTT-----------------GGCTTG-AACCCACTACCACAGCAGTGAGA-T-G-TAA-GTGATC-T-T--GA--G---A---TGGC-AC-CT-TAGACCACAGGCACTGGGCCTCAGAGGA-------CCC-----ATGTAGACAacgtgttaaaatgtataaatgccataaatagtttgtaaaatttgcatttttgtttacaaatgcaaacttagaagatataatcgttgacaat
gi|7 : cttacaccagtat-----TATAT-AGTAT-G--C--C---TAACTG-TATTGGAAA-----AGAAAAAAA-----CT----CA------------------------C-TACAAATC-----TGAGTAGAACCAACATCCGTCCGCAA-TAACACGC-AAT-CCTTTTCACA------------------GAA-CG---CTTGTAAACTACAACCTCAATGTTGAGA-G-G-TAA-TTTGTCGT-TAGGC--G---A---CAGC-GC-CT-TAGAC------CACTCTGCCGCGGAGGAC------Ctacatctaaatatgtccactttgtaaatgacctccataaacatttcaagatttttttattttgatacaaat
gi|8 : ttagaatataatTTTTTAATATT---TTTT----T-----AA-T---GGTTGCATCGTT-GTTTTCG-------AAACATAACG--TATTA-----TATA---GTAT-AG-TAAC---CAGTTT-AATCATTAC-----AGGAAGGC------TT----TTG-A----T---GCATTCCTGAGA-C-TG--AAT--ACA-TAAATAACGCTACCATGATTACGCAAGGTAC-TGG-CAG-CTT
gi|9 : tcttcTTTTTTGTTTGT---TTGT----TTT---AA-TAA-GATG--AGCGCCCATATTCATCCCATCATAAATAT----GATTA-----AATATTGG----A--T--C---CAGTTT-TATCAGCAG-----AGGAATGC------AT----CAA-A----T---GCATTC---AAATC-TG--CATC---------CAGAATCACTAT--TT--ACAAGTAAT-TGG-AAT-TATTCCCCCATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 22 111 111 1111111 11111111111 111111 0000000000000000000000000000000000000000 111111111 11111 111 11 1 1
lowQualScore : 0 3 1 1 00 33 3 555 8888 333 3 3 66 3 0000000 1 5555 4 88888 3 1 44444444444 2 3 77777 111111 6666 8888888888888888888888888888888888888888 2 1 0 3 99 66 9 0 999999999 4 2 4 1 2 2 2 2 0 6 2 22 777777 333 2 2 4 666666 666666 44444 222 33 5 5 1 1 1
lowQualScore : . . . . .. .. . ... .... ... . . .. . ....... . .... . ..... . . ........... . . ..... ...... .... ........................................ . . . . .. .. . . ......... . . . . . . . . . . . .. ...... ... . . . ...... ...... ..... ... .. . . . . .
lowQualScore : 7 8 0 0 00 55 4 666 5555 222 3 3 00 3 8888888 0 1111 1 33333 1 4 99999999999 9 0 77777 999999 5555 1111111111111111111111111111111111111111 5 6 9 1 55 00 5 7 777777777 4 9 4 6 7 7 5 4 1 7 1 99 555555 777 1 1 2 111111 888888 11111 000 88 0 0 0 0 0
consensus : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
Reference ( family-786 ) : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTGTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
gi|1 : AACATATTTCA-AGGATCCTTTCCAGGTTGATTTTTTGGTTCT---TATT----TCT---AA-TTG-GGTT-TAACACG-ATTTTCA-------ACACATTT--CATGTTG-----TA----GACAT-------T---CAGTTTGTATTG-CGG-----AGAAAGAC------CT----CAG-A--------A---TC---AA----------TC-----TTAGTAGAACCACCGTC-----------AA---GA-AAA-CATTTTCGCATAAAGTTTAAGGAT---CTAG-CGTGACTCG-TATATACGGTCTCGGCGGTGATA-GAG-CAACGT--TC-T-G--GT--G---A---CGGC-GA-CT-CAGAT------CACTCGGCCATGCAACAC------CC
gi|10 : tttttgttagataaattattatcaaaagttagtatgatgtaagaggtggccgttatgtgtttgaatatatattgatacatactaatgctaagactttaaaaatggtactagaagcttcctcgcctgacgctcagcatttagagaagagttctaggtctggtcagcccagtgtcagtataatgtgactgggcggggtatcataccatgtgtttgcggcatgatactctagtgtgacagcgcttagaatactgtctcaagtagacaccgtcgcgatatgacttaaaaattgttaaaagcgacgctaaacaccatactacaacaacatactaatgctgttgttttgatttgatatgaagaatgactgcaacgttatacagtgtataaacttatttttaaaaatcatatttaagcaactgaagtataaCCTGCGGTCATAGCGATGAGA-G-G-CAT-ATAGT--T-T--GA--G---A---CAGCAGTGTT-TAGAC------GATTCGGCAACAAAGAAA------CCC-----t
gi|11 : aggaatatcttaaaatgaatctctgaagaaccattgtccgtcatcttctagtcatgttttgtttgccttagcttggttgccat-A--T--C---CAGTTT-CATTGGTGA-----CTGAAGACTGAAGACT----TAG-G----T---A----C---AGA-C-CA--AGTC-AGA------AGAACCACTGGCGTTTTAC-AGTAAC-C----AA-CTATGTCA
gi|12 : tgaattggatttcccattactatgcagccatgaagtatgtagtttaaacaaaacgcGCTGTGAGA-G-A-AGA-GCCATC-C-T----------A---CAGC-AT-CT-TAGAC------AACTTGGCCATAGAGGAT------CC
gi|13 : tcattGA-G-G-TAA-GTGGTT-T-T--GA--GTGGA---CAAT-GT-CT-T-GAC------CACTCTGCCAGGGTGGAC------CCC-----Atttttaaaaataaatgactctagaataggtgcaatttattgaatagtatacaacaaacataacatataactaaattgaaaat
gi|14 : TAAC-TGGCAAA-CTTTCTCACAT-AAGTTTTTTTAC---CGAG-CTAGACTCA-A-----------------TGAGA-G-G-AAT-GTATTCAT-T--AAACG---A---CGAC-GT-CT-TAGAA------CATTTGGCGACAGAGGAT------TCCGT---AAA-AGAGAGATAATA--AAgcagtgatgtaacatgtacatgtatattggggctgtaaaaatgccagtgtaacacaatatgtaaaatgtttacat
gi|15 : AGC-TGG-AAGGCTTCCTCACATGAAAAATCCGAAGTACCCAGACGGTATTTG-AACC------CACAGCGGTGAGG-G-GCTGA-G-AGTT-TAC--AA--GTCCA---TGAC--C-ATATAAAC------TGCTCGGCCACAGAGG-C------CCC-----AAtac
gi|16 : TAATTCTTTCTTTTCGGCTTTTAATATCTTG-AAATGG-AGTT-AAACGCC-ACTTTCA-------AAACACA---AAGTTTATAATTTATAT-AGC-C-A--T------CAGTAT-GACTGGTAGTTGCCATGGAGAC------CC----C
gi|17 : ATAT-GACACCAGTT--T---CAATTT-TATTGTTGG-----TGGAAGAC------CT----CA----------------C---AA----TA--AATCCAAA-T---TA-AAGCACTGTCCATCTGCTATTAAA-TGG-CA----TGCTCACATGAAATTTCTGAAC---CGAtg
gi|18 : gA-G-G-TAA-ATGAGG-T-T--GA--G---A---TGCC-GA-TC-TGGAC------CACTGGGCCAAGGCGGAT------CCC-----A
gi|19 : A-TTG-GGTT-AAACCCC-ATTT----------AAAC---T--CA-----------ATGC-AACAT-A--T--CAACCAGATT-TAATATCAG-----AGAAAGAT------AT----CGGTC----T---G---TT---GGA-CATG--AGTC-----TGAGTAGAACCAGCGTcaaggtattgtaatctaaatacaagtcatattttaaaataacattttatttgtt
gi|2 : AAATATTGATGTAAAGTAACAGAGTTAACTGGAATATATTGCACACGTTTGTTTGTA--TTGATTTTTTCTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------AAACATAT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A----CTGAG---TC---AGA-C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-A-TACTAA-TTGAT-GACCTTTTCACTTCAT
gi|20 : tGAGA-G-G-TGG-GTGGAC-T-T--TA--G---A---CA-C-TT-CTGTATAC------CACTCGGTGACGGAGGAtcatactctttctaagatgaaacaagaggttgccactaacg
gi|21 : ccataCAACTGCAAGGGTGACATG-G-TAA-GTGGTCAT-T--AACCA---C---CAGC-GG-CT-CAGAC------CACTCAGCTACAGAatcgcagcagcgtattaaaaagacataaat
gi|22 : tactgaatatttgtgaatttAA-GTGCTG-T-T--GA--G---A---CGGC-GC-CC-TAGAC------CATGTGATCACCGAGGGC------CCCTGGTAAGATACACGAA-
gi|23 : GCTG-----CATAT-GGCATTA----------AGTTT-TATTGGTGG-----AGGTAGAC------CTTTCACAG-GTAATT---G---GC---AAA-C-T-----TCAAGATTGAGTTGAACtaagatgtatttgaaaaa
gi|24 : -T--GA--A---A---CAAT-GC-CT-CCAAC------CACTCAGCCACAGGGGGC------TC------AAATAGAGAAA-AGTA--AACTTGATCAACACTTTCAATGCAT
gi|25 : -T-T--CA--G---A---CGCT-GC-CT-TAGAC------CTCTCAGTCACAGAAAACTCTCTTTCC-----AATTGTACAAA-TGTA--AA
gi|26 : -TAA-GTGGTC-A-T--TA--G---ATAGCAGC-GC-AT-TGAAC------CATTCGGCAATGGAGGAC------CCtattctataaattt
gi|27 : G-GA-TGGAGGT---AACACC-ATATTCA-------AAACATATTATAGGTTA-----TATAT-GG--T-G--A--C---CAGTAT-TATttatattttaaaagtttaaat
gi|28 : AAATATTGATGCAAAGCATCAAAGTCGATTGGAATATATTGCATA
gi|29 : aataAAATATTGATGCAAAGCATCAAAGTCAACAAGAATATATTGCATA
gi|3 : agaTTTTATTCTT---TTTT----TTT---AA-TGG-GGTT-TAACGTT-ATTTTGA-------ACA-ATTT--TATGTTA-----TATAT-GACAT-A--T--C---CAGTTT-TATAGGTGG-----AGGAATAC------CT----CAG-A------------------------------------------AAACCACCGCACTTCCGCAAGTAAC-TGGCAAA-CTTTCTCACATAAATTTTTTGGAG---CGAG-CGGGAAACG-AACCTGCGACCTTAGCAGTGAGA-G-G-TAA-GTGATC-T-T--GA--C---A---CGGC-AA-CT-TTGAC------CACTCGGCCACGG-GTAC------CCT-----A
gi|30 : taacttttttaataaaT----TTTGG-AG-TGG-GTTT-TAACACC-ATTTTCA-------ATACATTT--Ctttttgaataaaactaaaacatcgtgtattgttttgttttacaattttgattccaagttctaagttaaattaacattttaagttgtactaatgtacatatatgagatccgatttttcaatataaataaaacatttttattaaaaaca
gi|31 : TTT----TTTTG-AA-TGA-GGTT-TAAAGCT-ATTTTCA-------AAACAT
gi|4 : TAAACTCCATTGCAG-T--AATTTTCATCTTT---TGTT----T---G-AA-TGG-GCTT-TATCGCC-ATTTCCA-------ATACATTT--CAAGTTA-----TATAT-AGTAT-A--T--C---CTATTT-TATTGGTGG-----AGGAAGAC------CC----TAG-A-------------------A---TG--AATC-----TGAGTAGAACCGCCGTCCCTCCTCAGGTAAT-TGG-----------CACAT----TTTTT-------CG---CGGTACTCG-AACCTACGACCACAACGGTGAAA-G-G-TGC-ATGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAA------AACTCGGCCACGGAGGAC------CC
gi|5 : caattgctgcatgtttaaactcaatttcaaattgaacgtgatatttttattaaatcacaaactttttcTTTTGTTTTG---TTTT----TTTTGGAA-TGG-GGTT-TAACGCC-ATTTTCA-------CCACATTT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A---------------------C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCgtcatcttatatgttagcgggacacacagaaacacaaagatacatgttc
gi|6 : TAAC-TGGCAAA-TTTTTTTATA----GTTT-----------------GGCTTG-AACCCACTACCACAGCAGTGAGA-T-G-TAA-GTGATC-T-T--GA--G---A---TGGC-AC-CT-TAGACCACAGGCACTGGGCCTCAGAGGA-------CCC-----ATGTAGACAacgtgttaaaatgtataaatgccataaatagtttgtaaaatttgcatttttgtttacaaatgcaaacttagaagatataatcgttgacaat
gi|7 : cttacaccagtat-----TATAT-AGTAT-G--C--C---TAACTG-TATTGGAAA-----AGAAAAAAA-----CT----CA------------------------C-TACAAATC-----TGAGTAGAACCAACATCCGTCCGCAA-TAACACGC-AAT-CCTTTTCACA------------------GAA-CG---CTTGTAAACTACAACCTCAATGTTGAGA-G-G-TAA-TTTGTCGT-TAGGC--G---A---CAGC-GC-CT-TAGAC------CACTCTGCCGCGGAGGAC------Ctacatctaaatatgtccactttgtaaatgacctccataaacatttcaagatttttttattttgatacaaat
gi|8 : ttagaatataatTCTTCTTTTTAA-TATT----TTTTT-AA-TGG---TTGCATCGTT-GTTTTCG-------AAACATAA--CGTATTA-----TATA---GTAT-AG-TAAC---CAGTTT-AATCATTAC-----AGGAAGGC------TT----TTG-A----T---GCATTCCTGAGA-C-TG--AAT--ACA-TAAATAACGCTACCATGATTACGCAAGGTAC-TGG-CAG-CTT
gi|9 : TTTTTTGTTTGT---TTGT----TTT---AA-TAA-GATG--AGCGCCCATATTCATCCCATCATAAATAT----GATTA-----AATATTGG----A--T--C---CAGTTT-TATCAGCAG-----AGGAATGC------AT----CAA-A----T---GCATTC---AAATC-TG--CATC---------CAGAATCACTAT--TT--ACAAGTAAT-TGG-AAT-TATTCCCCCATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 22 111 1111111 11111111111 111111 0000000000000000000000000000000000000000 111111111 11111 111 11 1 1
lowQualScore : 0 3 1 1 00 33 1 888 8888 3 555 3 3 66 3 0000000 1 2 999 88888 3 1 44444444444 2 3 77777 111111 6666 8888888888888888888888888888888888888888 2 1 0 3 99 66 9 0 999999999 4 2 4 1 2 2 2 2 0 6 2 22 777777 333 2 2 4 666666 666666 44444 222 33 5 5 1 1 1
lowQualScore : . . . . .. .. . ... .... . ... . . .. . ....... . . ... ..... . . ........... . . ..... ...... .... ........................................ . . . . .. .. . . ......... . . . . . . . . . . . .. ...... ... . . . ...... ...... ..... ... .. . . . . .
lowQualScore : 7 8 0 0 00 55 0 888 5555 8 666 3 3 00 3 8888888 0 3 666 33333 1 4 99999999999 9 0 77777 999999 5555 1111111111111111111111111111111111111111 5 6 9 1 55 00 5 7 777777777 4 9 4 6 7 7 5 4 1 7 1 99 555555 777 1 1 2 111111 888888 11111 000 88 0 0 0 0 0
consensus : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTGTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
Reference ( family-786 ) : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
gi|1 : AACATATTTCA-AGGATCCTTTCCAGGTTGATTTTTTGGTTCT---TATT----TCT---AA-TTG-GGTT-TAACACG-ATTTTCA-------ACACATTTCA--TGTTG-----TA----GACAT-------T---CAGTTTGTATTG-CGG-----AGAAAGAC------CT----CAG-A--------A---TC---AA----------TC-----TTAGTAGAACCACCGTC-----------AA---GA-AAA-CATTTTCGCATAAAGTTTAAGGAT---CTAG-CGTGACTCG-TATATACGGTCTCGGCGGTGATA-GAG-CAACGT--TC-T-G--GT--G---A---CGGC-GA-CT-CAGAT------CACTCGGCCATGCAACAC------CC
gi|10 : tttttgttagataaattattatcaaaagttagtatgatgtaagaggtggccgttatgtgtttgaatatatattgatacatactaatgctaagactttaaaaatggtactagaagcttcctcgcctgacgctcagcatttagagaagagttctaggtctggtcagcccagtgtcagtataatgtgactgggcggggtatcataccatgtgtttgcggcatgatactctagtgtgacagcgcttagaatactgtctcaagtagacaccgtcgcgatatgacttaaaaattgttaaaagcgacgctaaacaccatactacaacaacatactaatgctgttgttttgatttgatatgaagaatgactgcaacgttatacagtgtataaacttatttttaaaaatcatatttaagcaactgaagtataaCCTGCGGTCATAGCGATGAGA-G-G-CAT-ATAGT--T-T--GA--G---A---CAGCAGTGTT-TAGAC------GATTCGGCAACAAAGAAA------CCC-----t
gi|11 : aggaatatcttaaaatgaatctctgaagaaccattgtccgtcatcttctagtcatgttttgtttgccttagcttggttgccat-A--T--C---CAGTTT-CATTGGTGA-----CTGAAGACTGAAGACT----TAG-G----T---A----C---AGA-C-CA--AGTC-AGA------AGAACCACTGGCGTTTTAC-AGTAAC-C----AA-CTATGTCA
gi|12 : tgaattggatttcccattactatgcagccatgaagtatgtagtttaaacaaaacgcGCTGTGAGA-G-A-AGA-GCCATC-C-T----------A---CAGC-AT-CT-TAGAC------AACTTGGCCATAGAGGAT------CC
gi|13 : tcattGA-G-G-TAA-GTGGTT-T-T--GA--GTGGA---CAAT-GT-CT-T-GAC------CACTCTGCCAGGGTGGAC------CCC-----Atttttaaaaataaatgactctagaataggtgcaatttattgaatagtatacaacaaacataacatataactaaattgaaaat
gi|14 : TAAC-TGGCAAA-CTTTCTCACAT-AAGTTTTTTTAC---CGAG-CTAGACTCA-A-----------------TGAGA-G-G-AAT-GTATTCAT-T--AAACG---A---CGAC-GT-CT-TAGAA------CATTTGGCGACAGAGGAT------TCCGT---AAA-AGAGAGATAATA--AAgcagtgatgtaacatgtacatgtatattggggctgtaaaaatgccagtgtaacacaatatgtaaaatgtttacat
gi|15 : AGC-TGG-AAGGCTTCCTCACATGAAAAATCCGAAGTACCCAGACGGTATTTG-AACC------CACAGCGGTGAGG-G-GCTGA-G-AGTT-TAC--AA--GTCCA---TGAC--C-ATATAAAC------TGCTCGGCCACAGAGG-C------CCC-----AAtac
gi|16 : TAATTCTTTCTTTTCGGCTTTTAATATCTTG-AAATGG-AGTT-AAACGCC-ACTTTCA-------AAACACA-AA--GTTTATAATTTATAT-AGC-C-A--T------CAGTAT-GACTGGTAGTTGCCATGGAGAC------CC----C
gi|17 : ATAT-GACACCAGTT--T---CAATTT-TATTGTTGG-----TGGAAGAC------CT----CA----------------C---AA----TA--AATCCAAA-T---TA-AAGCACTGTCCATCTGCTATTAAA-TGG-CA----TGCTCACATGAAATTTCTGAAC---CGAtg
gi|18 : gA-G-G-TAA-ATGAGG-T-T--GA--G---A---TGCC-GA-TC-TGGAC------CACTGGGCCAAGGCGGAT------CCC-----A
gi|19 : A-TTG-GGTT-AAACCCC-ATTT----------AAAC---TCA-------------ATGC-AACAT-A--T--CAACCAGATT-TAATATCAG-----AGAAAGAT------AT----CGGTC----T---G---TT---GGA-CATG--AGTC-----TGAGTAGAACCAGCGTcaaggtattgtaatctaaatacaagtcatattttaaaataacattttatttgtt
gi|2 : AAATATTGATGTAAAGTAACAGAGTTAACTGGAATATATTGCACACGTTTGTTTGTA--TTGATTTTTTCTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------AAACATATCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A----CTGAG---TC---AGA-C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-A-TACTAA-TTGAT-GACCTTTTCACTTCAT
gi|20 : tGAGA-G-G-TGG-GTGGAC-T-T--TA--G---A---CA-C-TT-CTGTATAC------CACTCGGTGACGGAGGAtcatactctttctaagatgaaacaagaggttgccactaacg
gi|21 : ccataCAACTGCAAGGGTGACATG-G-TAA-GTGGTCAT-T--AACCA---C---CAGC-GG-CT-CAGAC------CACTCAGCTACAGAatcgcagcagcgtattaaaaagacataaat
gi|22 : tactgaatatttgtgaatttAA-GTGCTG-T-T--GA--G---A---CGGC-GC-CC-TAGAC------CATGTGATCACCGAGGGC------CCCTGGTAAGATACACGAA-
gi|23 : GCTG-----CATAT-GGCATTA----------AGTTT-TATTGGTGG-----AGGTAGAC------CTTTCACAG-GTAATT---G---GC---AAA-C-T-----TCAAGATTGAGTTGAACtaagatgtatttgaaaaa
gi|24 : -T--GA--A---A---CAAT-GC-CT-CCAAC------CACTCAGCCACAGGGGGC------TC------AAATAGAGAAA-AGTA--AACTTGATCAACACTTTCAATGCAT
gi|25 : -T-T--CA--G---A---CGCT-GC-CT-TAGAC------CTCTCAGTCACAGAAAACTCTCTTTCC-----AATTGTACAAA-TGTA--AA
gi|26 : -TAA-GTGGTC-A-T--TA--G---ATAGCAGC-GC-AT-TGAAC------CATTCGGCAATGGAGGAC------CCtattctataaattt
gi|27 : G-GA-TGGAGGT---AACACC-ATATTCA-------AAACATATTATAGGTTA-----TATAT-GG--T-G--A--C---CAGTAT-TATttatattttaaaagtttaaat
gi|28 : AAATATTGATGCAAAGCATCAAAGTCGATTGGAATATATTGCATA
gi|29 : aataAAATATTGATGCAAAGCATCAAAGTCAACAAGAATATATTGCATA
gi|3 : agaTTTTATTCTT---TTTT----TTT---AA-TGG-GGTT-TAACGTT-ATTTTGA-------ACA-ATTTTA--TGTTA-----TATAT-GACAT-A--T--C---CAGTTT-TATAGGTGG-----AGGAATAC------CT----CAG-A------------------------------------------AAACCACCGCACTTCCGCAAGTAAC-TGGCAAA-CTTTCTCACATAAATTTTTTGGAG---CGAG-CGGGAAACG-AACCTGCGACCTTAGCAGTGAGA-G-G-TAA-GTGATC-T-T--GA--C---A---CGGC-AA-CT-TTGAC------CACTCGGCCACGG-GTAC------CCT-----A
gi|30 : taacttttttaataaaT----TTTGG-AG-TGG-GTTT-TAACACC-ATTTTCA-------ATACATTTCtttttgaataaaactaaaacatcgtgtattgttttgttttacaattttgattccaagttctaagttaaattaacattttaagttgtactaatgtacatatatgagatccgatttttcaatataaataaaacatttttattaaaaaca
gi|31 : TTT----TTTTG-AA-TGA-GGTT-TAAAGCT-ATTTTCA-------AAACAT
gi|4 : TAAACTCCATTGCAG-T--AATTTTCATCTTT---TGTT----T---G-AA-TGG-GCTT-TATCGCC-ATTTCCA-------ATACATTTCA--AGTTA-----TATAT-AGTAT-A--T--C---CTATTT-TATTGGTGG-----AGGAAGAC------CC----TAG-A-------------------A---TG--AATC-----TGAGTAGAACCGCCGTCCCTCCTCAGGTAAT-TGG-----------CACAT----TTTTT-------CG---CGGTACTCG-AACCTACGACCACAACGGTGAAA-G-G-TGC-ATGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAA------AACTCGGCCACGGAGGAC------CC
gi|5 : caattgctgcatgtttaaactcaatttcaaattgaacgtgatatttttattaaatcacaaactttttcTTTTGTTTTG---TTTT----TTTTGGAA-TGG-GGTT-TAACGCC-ATTTTCA-------CCACATTTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A---------------------C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCgtcatcttatatgttagcgggacacacagaaacacaaagatacatgttc
gi|6 : TAAC-TGGCAAA-TTTTTTTATA----GTTT-----------------GGCTTG-AACCCACTACCACAGCAGTGAGA-T-G-TAA-GTGATC-T-T--GA--G---A---TGGC-AC-CT-TAGACCACAGGCACTGGGCCTCAGAGGA-------CCC-----ATGTAGACAacgtgttaaaatgtataaatgccataaatagtttgtaaaatttgcatttttgtttacaaatgcaaacttagaagatataatcgttgacaat
gi|7 : cttacaccagtat-----TATAT-AGTAT-G--C--C---TAACTG-TATTGGAAA-----AGAAAAAAA-----CT----CA------------------------C-TACAAATC-----TGAGTAGAACCAACATCCGTCCGCAA-TAACACGC-AAT-CCTTTTCACA------------------GAA-CG---CTTGTAAACTACAACCTCAATGTTGAGA-G-G-TAA-TTTGTCGT-TAGGC--G---A---CAGC-GC-CT-TAGAC------CACTCTGCCGCGGAGGAC------Ctacatctaaatatgtccactttgtaaatgacctccataaacatttcaagatttttttattttgatacaaat
gi|8 : ttagaatataatTTTTTAATATT---TTTT----T-----AA-T---GGTTGCATCGTT-GTTTTCG-------AAACATAACG--TATTA-----TATA---GTAT-AG-TAAC---CAGTTT-AATCATTAC-----AGGAAGGC------TT----TTG-A----T---GCATTCCTGAGA-C-TG--AAT--ACA-TAAATAACGCTACCATGATTACGCAAGGTAC-TGG-CAG-CTT
gi|9 : tcttcTTTTTTGTTTGT---TTGT----TTT---AA-TAA-GATG--AGCGCCCATATTCATCCCATCATAAATAT----GATTA-----AATATTGG----A--T--C---CAGTTT-TATCAGCAG-----AGGAATGC------AT----CAA-A----T---GCATTC---AAATC-TG--CATC---------CAGAATCACTAT--TT--ACAAGTAAT-TGG-AAT-TATTCCCCCATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 22 111 111 1111111 11111111111 111111 0000000000000000000000000000000000000000 111111111 11111 111 11 1 1
lowQualScore : 0 3 1 1 00 33 3 555 8888 333 3 3 66 3 0000000 1 5555 4 88888 3 1 44444444444 2 3 77777 111111 6666 8888888888888888888888888888888888888888 2 1 0 3 99 66 9 0 999999999 4 2 4 1 2 2 2 2 0 6 2 22 777777 333 2 2 4 666666 666666 44444 222 33 5 5 1 1 1
lowQualScore : . . . . .. .. . ... .... ... . . .. . ....... . .... . ..... . . ........... . . ..... ...... .... ........................................ . . . . .. .. . . ......... . . . . . . . . . . . .. ...... ... . . . ...... ...... ..... ... .. . . . . .
lowQualScore : 7 8 0 0 00 55 4 666 5555 222 3 3 00 3 8888888 0 1111 1 33333 1 4 99999999999 9 0 77777 999999 5555 1111111111111111111111111111111111111111 5 6 9 1 55 00 5 7 777777777 4 9 4 6 7 7 5 4 1 7 1 99 555555 777 1 1 2 111111 888888 11111 000 88 0 0 0 0 0
consensus : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
Reference ( family-786 ) : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTGTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
gi|1 : AACATATTTCA-AGGATCCTTTCCAGGTTGATTTTTTGGTTCT---TATT----TCT---AA-TTG-GGTT-TAACACG-ATTTTCA-------ACACATTT--CATGTTG-----TA----GACAT-------T---CAGTTTGTATTG-CGG-----AGAAAGAC------CT----CAG-A--------A---TC---AA----------TC-----TTAGTAGAACCACCGTC-----------AA---GA-AAA-CATTTTCGCATAAAGTTTAAGGAT---CTAG-CGTGACTCG-TATATACGGTCTCGGCGGTGATA-GAG-CAACGT--TC-T-G--GT--G---A---CGGC-GA-CT-CAGAT------CACTCGGCCATGCAACAC------CC
gi|10 : tttttgttagataaattattatcaaaagttagtatgatgtaagaggtggccgttatgtgtttgaatatatattgatacatactaatgctaagactttaaaaatggtactagaagcttcctcgcctgacgctcagcatttagagaagagttctaggtctggtcagcccagtgtcagtataatgtgactgggcggggtatcataccatgtgtttgcggcatgatactctagtgtgacagcgcttagaatactgtctcaagtagacaccgtcgcgatatgacttaaaaattgttaaaagcgacgctaaacaccatactacaacaacatactaatgctgttgttttgatttgatatgaagaatgactgcaacgttatacagtgtataaacttatttttaaaaatcatatttaagcaactgaagtataaCCTGCGGTCATAGCGATGAGA-G-G-CAT-ATAGT--T-T--GA--G---A---CAGCAGTGTT-TAGAC------GATTCGGCAACAAAGAAA------CCC-----t
gi|11 : aggaatatcttaaaatgaatctctgaagaaccattgtccgtcatcttctagtcatgttttgtttgccttagcttggttgccat-A--T--C---CAGTTT-CATTGGTGA-----CTGAAGACTGAAGACT----TAG-G----T---A----C---AGA-C-CA--AGTC-AGA------AGAACCACTGGCGTTTTAC-AGTAAC-C----AA-CTATGTCA
gi|12 : tgaattggatttcccattactatgcagccatgaagtatgtagtttaaacaaaacgcGCTGTGAGA-G-A-AGA-GCCATC-C-T----------A---CAGC-AT-CT-TAGAC------AACTTGGCCATAGAGGAT------CC
gi|13 : tcattGA-G-G-TAA-GTGGTT-T-T--GA--GTGGA---CAAT-GT-CT-T-GAC------CACTCTGCCAGGGTGGAC------CCC-----Atttttaaaaataaatgactctagaataggtgcaatttattgaatagtatacaacaaacataacatataactaaattgaaaat
gi|14 : TAAC-TGGCAAA-CTTTCTCACAT-AAGTTTTTTTAC---CGAG-CTAGACTCA-A-----------------TGAGA-G-G-AAT-GTATTCAT-T--AAACG---A---CGAC-GT-CT-TAGAA------CATTTGGCGACAGAGGAT------TCCGT---AAA-AGAGAGATAATA--AAgcagtgatgtaacatgtacatgtatattggggctgtaaaaatgccagtgtaacacaatatgtaaaatgtttacat
gi|15 : AGC-TGG-AAGGCTTCCTCACATGAAAAATCCGAAGTACCCAGACGGTATTTG-AACC------CACAGCGGTGAGG-G-GCTGA-G-AGTT-TAC--AA--GTCCA---TGAC--C-ATATAAAC------TGCTCGGCCACAGAGG-C------CCC-----AAtac
gi|16 : TAATTCTTTCTTTTCGGCTTTTAATATCTTG-AAATGG-AGTT-AAACGCC-ACTTTCA-------AAACACA---AAGTTTATAATTTATAT-AGC-C-A--T------CAGTAT-GACTGGTAGTTGCCATGGAGAC------CC----C
gi|17 : ATAT-GACACCAGTT--T---CAATTT-TATTGTTGG-----TGGAAGAC------CT----CA----------------C---AA----TA--AATCCAAA-T---TA-AAGCACTGTCCATCTGCTATTAAA-TGG-CA----TGCTCACATGAAATTTCTGAAC---CGAtg
gi|18 : gA-G-G-TAA-ATGAGG-T-T--GA--G---A---TGCC-GA-TC-TGGAC------CACTGGGCCAAGGCGGAT------CCC-----A
gi|19 : A-TTG-GGTT-AAACCCC-ATTT----------AAAC---T--CA-----------ATGC-AACAT-A--T--CAACCAGATT-TAATATCAG-----AGAAAGAT------AT----CGGTC----T---G---TT---GGA-CATG--AGTC-----TGAGTAGAACCAGCGTcaaggtattgtaatctaaatacaagtcatattttaaaataacattttatttgtt
gi|2 : AAATATTGATGTAAAGTAACAGAGTTAACTGGAATATATTGCACACGTTTGTTTGTA--TTGATTTTTTCTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------AAACATAT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A----CTGAG---TC---AGA-C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-A-TACTAA-TTGAT-GACCTTTTCACTTCAT
gi|20 : tGAGA-G-G-TGG-GTGGAC-T-T--TA--G---A---CA-C-TT-CTGTATAC------CACTCGGTGACGGAGGAtcatactctttctaagatgaaacaagaggttgccactaacg
gi|21 : ccataCAACTGCAAGGGTGACATG-G-TAA-GTGGTCAT-T--AACCA---C---CAGC-GG-CT-CAGAC------CACTCAGCTACAGAatcgcagcagcgtattaaaaagacataaat
gi|22 : tactgaatatttgtgaatttAA-GTGCTG-T-T--GA--G---A---CGGC-GC-CC-TAGAC------CATGTGATCACCGAGGGC------CCCTGGTAAGATACACGAA-
gi|23 : GCTG-----CATAT-GGCATTA----------AGTTT-TATTGGTGG-----AGGTAGAC------CTTTCACAG-GTAATT---G---GC---AAA-C-T-----TCAAGATTGAGTTGAACtaagatgtatttgaaaaa
gi|24 : -T--GA--A---A---CAAT-GC-CT-CCAAC------CACTCAGCCACAGGGGGC------TC------AAATAGAGAAA-AGTA--AACTTGATCAACACTTTCAATGCAT
gi|25 : -T-T--CA--G---A---CGCT-GC-CT-TAGAC------CTCTCAGTCACAGAAAACTCTCTTTCC-----AATTGTACAAA-TGTA--AA
gi|26 : -TAA-GTGGTC-A-T--TA--G---ATAGCAGC-GC-AT-TGAAC------CATTCGGCAATGGAGGAC------CCtattctataaattt
gi|27 : G-GA-TGGAGGT---AACACC-ATATTCA-------AAACATATTATAGGTTA-----TATAT-GG--T-G--A--C---CAGTAT-TATttatattttaaaagtttaaat
gi|28 : AAATATTGATGCAAAGCATCAAAGTCGATTGGAATATATTGCATA
gi|29 : aataAAATATTGATGCAAAGCATCAAAGTCAACAAGAATATATTGCATA
gi|3 : agaTTTTATTCTT---TTTT----TTT---AA-TGG-GGTT-TAACGTT-ATTTTGA-------ACA-ATTT--TATGTTA-----TATAT-GACAT-A--T--C---CAGTTT-TATAGGTGG-----AGGAATAC------CT----CAG-A------------------------------------------AAACCACCGCACTTCCGCAAGTAAC-TGGCAAA-CTTTCTCACATAAATTTTTTGGAG---CGAG-CGGGAAACG-AACCTGCGACCTTAGCAGTGAGA-G-G-TAA-GTGATC-T-T--GA--C---A---CGGC-AA-CT-TTGAC------CACTCGGCCACGG-GTAC------CCT-----A
gi|30 : taacttttttaataaaT----TTTGG-AG-TGG-GTTT-TAACACC-ATTTTCA-------ATACATTT--Ctttttgaataaaactaaaacatcgtgtattgttttgttttacaattttgattccaagttctaagttaaattaacattttaagttgtactaatgtacatatatgagatccgatttttcaatataaataaaacatttttattaaaaaca
gi|31 : TTT----TTTTG-AA-TGA-GGTT-TAAAGCT-ATTTTCA-------AAACAT
gi|4 : TAAACTCCATTGCAG-T--AATTTTCATCTTT---TGTT----T---G-AA-TGG-GCTT-TATCGCC-ATTTCCA-------ATACATTT--CAAGTTA-----TATAT-AGTAT-A--T--C---CTATTT-TATTGGTGG-----AGGAAGAC------CC----TAG-A-------------------A---TG--AATC-----TGAGTAGAACCGCCGTCCCTCCTCAGGTAAT-TGG-----------CACAT----TTTTT-------CG---CGGTACTCG-AACCTACGACCACAACGGTGAAA-G-G-TGC-ATGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAA------AACTCGGCCACGGAGGAC------CC
gi|5 : caattgctgcatgtttaaactcaatttcaaattgaacgtgatatttttattaaatcacaaactttttcTTTTGTTTTG---TTTT----TTTTGGAA-TGG-GGTT-TAACGCC-ATTTTCA-------CCACATTT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A---------------------C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCgtcatcttatatgttagcgggacacacagaaacacaaagatacatgttc
gi|6 : TAAC-TGGCAAA-TTTTTTTATA----GTTT-----------------GGCTTG-AACCCACTACCACAGCAGTGAGA-T-G-TAA-GTGATC-T-T--GA--G---A---TGGC-AC-CT-TAGACCACAGGCACTGGGCCTCAGAGGA-------CCC-----ATGTAGACAacgtgttaaaatgtataaatgccataaatagtttgtaaaatttgcatttttgtttacaaatgcaaacttagaagatataatcgttgacaat
gi|7 : cttacaccagtat-----TATAT-AGTAT-G--C--C---TAACTG-TATTGGAAA-----AGAAAAAAA-----CT----CA------------------------C-TACAAATC-----TGAGTAGAACCAACATCCGTCCGCAA-TAACACGC-AAT-CCTTTTCACA------------------GAA-CG---CTTGTAAACTACAACCTCAATGTTGAGA-G-G-TAA-TTTGTCGT-TAGGC--G---A---CAGC-GC-CT-TAGAC------CACTCTGCCGCGGAGGAC------Ctacatctaaatatgtccactttgtaaatgacctccataaacatttcaagatttttttattttgatacaaat
gi|8 : ttagaatataatTCTTCTTTTTAA-TATT----TTTTT-AA-TGG---TTGCATCGTT-GTTTTCG-------AAACATAA--CGTATTA-----TATA---GTAT-AG-TAAC---CAGTTT-AATCATTAC-----AGGAAGGC------TT----TTG-A----T---GCATTCCTGAGA-C-TG--AAT--ACA-TAAATAACGCTACCATGATTACGCAAGGTAC-TGG-CAG-CTT
gi|9 : TTTTTTGTTTGT---TTGT----TTT---AA-TAA-GATG--AGCGCCCATATTCATCCCATCATAAATAT----GATTA-----AATATTGG----A--T--C---CAGTTT-TATCAGCAG-----AGGAATGC------AT----CAA-A----T---GCATTC---AAATC-TG--CATC---------CAGAATCACTAT--TT--ACAAGTAAT-TGG-AAT-TATTCCCCCATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 22 111 1111111 11111111111 111111 0000000000000000000000000000000000000000 111111111 11111 111 11 1 1
lowQualScore : 0 3 1 1 00 33 1 888 8888 3 555 3 3 66 3 0000000 1 2 999 88888 3 1 44444444444 2 3 77777 111111 6666 8888888888888888888888888888888888888888 2 1 0 3 99 66 9 0 999999999 4 2 4 1 2 2 2 2 0 6 2 22 777777 333 2 2 4 666666 666666 44444 222 33 5 5 1 1 1
lowQualScore : . . . . .. .. . ... .... . ... . . .. . ....... . . ... ..... . . ........... . . ..... ...... .... ........................................ . . . . .. .. . . ......... . . . . . . . . . . . .. ...... ... . . . ...... ...... ..... ... .. . . . . .
lowQualScore : 7 8 0 0 00 55 0 888 5555 8 666 3 3 00 3 8888888 0 3 666 33333 1 4 99999999999 9 0 77777 999999 5555 1111111111111111111111111111111111111111 5 6 9 1 55 00 5 7 777777777 4 9 4 6 7 7 5 4 1 7 1 99 555555 777 1 1 2 111111 888888 11111 000 88 0 0 0 0 0
consensus : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTGTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
Reference ( family-786 ) : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
gi|1 : AACATATTTCA-AGGATCCTTTCCAGGTTGATTTTTTGGTTCT---TATT----TCT---AA-TTG-GGTT-TAACACG-ATTTTCA-------ACACATTTCA--TGTTG-----TA----GACAT-------T---CAGTTTGTATTG-CGG-----AGAAAGAC------CT----CAG-A--------A---TC---AA----------TC-----TTAGTAGAACCACCGTC-----------AA---GA-AAA-CATTTTCGCATAAAGTTTAAGGAT---CTAG-CGTGACTCG-TATATACGGTCTCGGCGGTGATA-GAG-CAACGT--TC-T-G--GT--G---A---CGGC-GA-CT-CAGAT------CACTCGGCCATGCAACAC------CC
gi|10 : tttttgttagataaattattatcaaaagttagtatgatgtaagaggtggccgttatgtgtttgaatatatattgatacatactaatgctaagactttaaaaatggtactagaagcttcctcgcctgacgctcagcatttagagaagagttctaggtctggtcagcccagtgtcagtataatgtgactgggcggggtatcataccatgtgtttgcggcatgatactctagtgtgacagcgcttagaatactgtctcaagtagacaccgtcgcgatatgacttaaaaattgttaaaagcgacgctaaacaccatactacaacaacatactaatgctgttgttttgatttgatatgaagaatgactgcaacgttatacagtgtataaacttatttttaaaaatcatatttaagcaactgaagtataaCCTGCGGTCATAGCGATGAGA-G-G-CAT-ATAGT--T-T--GA--G---A---CAGCAGTGTT-TAGAC------GATTCGGCAACAAAGAAA------CCC-----t
gi|11 : aggaatatcttaaaatgaatctctgaagaaccattgtccgtcatcttctagtcatgttttgtttgccttagcttggttgccat-A--T--C---CAGTTT-CATTGGTGA-----CTGAAGACTGAAGACT----TAG-G----T---A----C---AGA-C-CA--AGTC-AGA------AGAACCACTGGCGTTTTAC-AGTAAC-C----AA-CTATGTCA
gi|12 : tgaattggatttcccattactatgcagccatgaagtatgtagtttaaacaaaacgcGCTGTGAGA-G-A-AGA-GCCATC-C-T----------A---CAGC-AT-CT-TAGAC------AACTTGGCCATAGAGGAT------CC
gi|13 : tcattGA-G-G-TAA-GTGGTT-T-T--GA--GTGGA---CAAT-GT-CT-T-GAC------CACTCTGCCAGGGTGGAC------CCC-----Atttttaaaaataaatgactctagaataggtgcaatttattgaatagtatacaacaaacataacatataactaaattgaaaat
gi|14 : TAAC-TGGCAAA-CTTTCTCACAT-AAGTTTTTTTAC---CGAG-CTAGACTCA-A-----------------TGAGA-G-G-AAT-GTATTCAT-T--AAACG---A---CGAC-GT-CT-TAGAA------CATTTGGCGACAGAGGAT------TCCGT---AAA-AGAGAGATAATA--AAgcagtgatgtaacatgtacatgtatattggggctgtaaaaatgccagtgtaacacaatatgtaaaatgtttacat
gi|15 : AGC-TGG-AAGGCTTCCTCACATGAAAAATCCGAAGTACCCAGACGGTATTTG-AACC------CACAGCGGTGAGG-G-GCTGA-G-AGTT-TAC--AA--GTCCA---TGAC--C-ATATAAAC------TGCTCGGCCACAGAGG-C------CCC-----AAtac
gi|16 : TAATTCTTTCTTTTCGGCTTTTAATATCTTG-AAATGG-AGTT-AAACGCC-ACTTTCA-------AAACACA-AA--GTTTATAATTTATAT-AGC-C-A--T------CAGTAT-GACTGGTAGTTGCCATGGAGAC------CC----C
gi|17 : ATAT-GACACCAGTT--T---CAATTT-TATTGTTGG-----TGGAAGAC------CT----CA----------------C---AA----TA--AATCCAAA-T---TA-AAGCACTGTCCATCTGCTATTAAA-TGG-CA----TGCTCACATGAAATTTCTGAAC---CGAtg
gi|18 : gA-G-G-TAA-ATGAGG-T-T--GA--G---A---TGCC-GA-TC-TGGAC------CACTGGGCCAAGGCGGAT------CCC-----A
gi|19 : A-TTG-GGTT-AAACCCC-ATTT----------AAAC---TCA-------------ATGC-AACAT-A--T--CAACCAGATT-TAATATCAG-----AGAAAGAT------AT----CGGTC----T---G---TT---GGA-CATG--AGTC-----TGAGTAGAACCAGCGTcaaggtattgtaatctaaatacaagtcatattttaaaataacattttatttgtt
gi|2 : AAATATTGATGTAAAGTAACAGAGTTAACTGGAATATATTGCACACGTTTGTTTGTA--TTGATTTTTTCTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------AAACATATCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A----CTGAG---TC---AGA-C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-A-TACTAA-TTGAT-GACCTTTTCACTTCAT
gi|20 : tGAGA-G-G-TGG-GTGGAC-T-T--TA--G---A---CA-C-TT-CTGTATAC------CACTCGGTGACGGAGGAtcatactctttctaagatgaaacaagaggttgccactaacg
gi|21 : ccataCAACTGCAAGGGTGACATG-G-TAA-GTGGTCAT-T--AACCA---C---CAGC-GG-CT-CAGAC------CACTCAGCTACAGAatcgcagcagcgtattaaaaagacataaat
gi|22 : tactgaatatttgtgaatttAA-GTGCTG-T-T--GA--G---A---CGGC-GC-CC-TAGAC------CATGTGATCACCGAGGGC------CCCTGGTAAGATACACGAA-
gi|23 : GCTG-----CATAT-GGCATTA----------AGTTT-TATTGGTGG-----AGGTAGAC------CTTTCACAG-GTAATT---G---GC---AAA-C-T-----TCAAGATTGAGTTGAACtaagatgtatttgaaaaa
gi|24 : -T--GA--A---A---CAAT-GC-CT-CCAAC------CACTCAGCCACAGGGGGC------TC------AAATAGAGAAA-AGTA--AACTTGATCAACACTTTCAATGCAT
gi|25 : -T-T--CA--G---A---CGCT-GC-CT-TAGAC------CTCTCAGTCACAGAAAACTCTCTTTCC-----AATTGTACAAA-TGTA--AA
gi|26 : -TAA-GTGGTC-A-T--TA--G---ATAGCAGC-GC-AT-TGAAC------CATTCGGCAATGGAGGAC------CCtattctataaattt
gi|27 : G-GA-TGGAGGT---AACACC-ATATTCA-------AAACATATTATAGGTTA-----TATAT-GG--T-G--A--C---CAGTAT-TATttatattttaaaagtttaaat
gi|28 : AAATATTGATGCAAAGCATCAAAGTCGATTGGAATATATTGCATA
gi|29 : aataAAATATTGATGCAAAGCATCAAAGTCAACAAGAATATATTGCATA
gi|3 : agaTTTTATTCTT---TTTT----TTT---AA-TGG-GGTT-TAACGTT-ATTTTGA-------ACA-ATTTTA--TGTTA-----TATAT-GACAT-A--T--C---CAGTTT-TATAGGTGG-----AGGAATAC------CT----CAG-A------------------------------------------AAACCACCGCACTTCCGCAAGTAAC-TGGCAAA-CTTTCTCACATAAATTTTTTGGAG---CGAG-CGGGAAACG-AACCTGCGACCTTAGCAGTGAGA-G-G-TAA-GTGATC-T-T--GA--C---A---CGGC-AA-CT-TTGAC------CACTCGGCCACGG-GTAC------CCT-----A
gi|30 : taacttttttaataaaT----TTTGG-AG-TGG-GTTT-TAACACC-ATTTTCA-------ATACATTTCtttttgaataaaactaaaacatcgtgtattgttttgttttacaattttgattccaagttctaagttaaattaacattttaagttgtactaatgtacatatatgagatccgatttttcaatataaataaaacatttttattaaaaaca
gi|31 : TTT----TTTTG-AA-TGA-GGTT-TAAAGCT-ATTTTCA-------AAACAT
gi|4 : TAAACTCCATTGCAG-T--AATTTTCATCTTT---TGTT----T---G-AA-TGG-GCTT-TATCGCC-ATTTCCA-------ATACATTTCA--AGTTA-----TATAT-AGTAT-A--T--C---CTATTT-TATTGGTGG-----AGGAAGAC------CC----TAG-A-------------------A---TG--AATC-----TGAGTAGAACCGCCGTCCCTCCTCAGGTAAT-TGG-----------CACAT----TTTTT-------CG---CGGTACTCG-AACCTACGACCACAACGGTGAAA-G-G-TGC-ATGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAA------AACTCGGCCACGGAGGAC------CC
gi|5 : caattgctgcatgtttaaactcaatttcaaattgaacgtgatatttttattaaatcacaaactttttcTTTTGTTTTG---TTTT----TTTTGGAA-TGG-GGTT-TAACGCC-ATTTTCA-------CCACATTTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A---------------------C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCgtcatcttatatgttagcgggacacacagaaacacaaagatacatgttc
gi|6 : TAAC-TGGCAAA-TTTTTTTATA----GTTT-----------------GGCTTG-AACCCACTACCACAGCAGTGAGA-T-G-TAA-GTGATC-T-T--GA--G---A---TGGC-AC-CT-TAGACCACAGGCACTGGGCCTCAGAGGA-------CCC-----ATGTAGACAacgtgttaaaatgtataaatgccataaatagtttgtaaaatttgcatttttgtttacaaatgcaaacttagaagatataatcgttgacaat
gi|7 : cttacaccagtat-----TATAT-AGTAT-G--C--C---TAACTG-TATTGGAAA-----AGAAAAAAA-----CT----CA------------------------C-TACAAATC-----TGAGTAGAACCAACATCCGTCCGCAA-TAACACGC-AAT-CCTTTTCACA------------------GAA-CG---CTTGTAAACTACAACCTCAATGTTGAGA-G-G-TAA-TTTGTCGT-TAGGC--G---A---CAGC-GC-CT-TAGAC------CACTCTGCCGCGGAGGAC------Ctacatctaaatatgtccactttgtaaatgacctccataaacatttcaagatttttttattttgatacaaat
gi|8 : ttagaatataatTTTTTAATATT---TTTT----T-----AA-T---GGTTGCATCGTT-GTTTTCG-------AAACATAACG--TATTA-----TATA---GTAT-AG-TAAC---CAGTTT-AATCATTAC-----AGGAAGGC------TT----TTG-A----T---GCATTCCTGAGA-C-TG--AAT--ACA-TAAATAACGCTACCATGATTACGCAAGGTAC-TGG-CAG-CTT
gi|9 : tcttcTTTTTTGTTTGT---TTGT----TTT---AA-TAA-GATG--AGCGCCCATATTCATCCCATCATAAATAT----GATTA-----AATATTGG----A--T--C---CAGTTT-TATCAGCAG-----AGGAATGC------AT----CAA-A----T---GCATTC---AAATC-TG--CATC---------CAGAATCACTAT--TT--ACAAGTAAT-TGG-AAT-TATTCCCCCATGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 22 111 111 1111111 11111111111 111111 0000000000000000000000000000000000000000 111111111 11111 111 11 1 1
lowQualScore : 0 3 1 1 00 33 3 555 8888 333 3 3 66 3 0000000 1 5555 4 88888 3 1 44444444444 2 3 77777 111111 6666 8888888888888888888888888888888888888888 2 1 0 3 99 66 9 0 999999999 4 2 4 1 2 2 2 2 0 6 2 22 777777 333 2 2 4 666666 666666 44444 222 33 5 5 1 1 1
lowQualScore : . . . . .. .. . ... .... ... . . .. . ....... . .... . ..... . . ........... . . ..... ...... .... ........................................ . . . . .. .. . . ......... . . . . . . . . . . . .. ...... ... . . . ...... ...... ..... ... .. . . . . .
lowQualScore : 7 8 0 0 00 55 4 666 5555 222 3 3 00 3 8888888 0 1111 1 33333 1 4 99999999999 9 0 77777 999999 5555 1111111111111111111111111111111111111111 5 6 9 1 55 00 5 7 777777777 4 9 4 6 7 7 5 4 1 7 1 99 555555 777 1 1 2 111111 888888 11111 000 88 0 0 0 0 0
consensus : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
Reference ( family-786 ) : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTGTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
gi|1 : AACATATTTCA-AGGATCCTTTCCAGGTTGATTTTTTGGTTCT---TATT----TCT---AA-TTG-GGTT-TAACACG-ATTTTCA-------ACACATTT--CATGTTG-----TA----GACAT-------T---CAGTTTGTATTG-CGG-----AGAAAGAC------CT----CAG-A--------A---TC---AA----------TC-----TTAGTAGAACCACCGTC-----------AA---GA-AAA-CATTTTCGCATAAAGTTTAAGGAT---CTAG-CGTGACTCG-TATATACGGTCTCGGCGGTGATA-GAG-CAACGT--TC-T-G--GT--G---A---CGGC-GA-CT-CAGAT------CACTCGGCCATGCAACAC------CC
gi|10 : tttttgttagataaattattatcaaaagttagtatgatgtaagaggtggccgttatgtgtttgaatatatattgatacatactaatgctaagactttaaaaatggtactagaagcttcctcgcctgacgctcagcatttagagaagagttctaggtctggtcagcccagtgtcagtataatgtgactgggcggggtatcataccatgtgtttgcggcatgatactctagtgtgacagcgcttagaatactgtctcaagtagacaccgtcgcgatatgacttaaaaattgttaaaagcgacgctaaacaccatactacaacaacatactaatgctgttgttttgatttgatatgaagaatgactgcaacgttatacagtgtataaacttatttttaaaaatcatatttaagcaactgaagtataaCCTGCGGTCATAGCGATGAGA-G-G-CAT-ATAGT--T-T--GA--G---A---CAGCAGTGTT-TAGAC------GATTCGGCAACAAAGAAA------CCC-----t
gi|11 : aggaatatcttaaaatgaatctctgaagaaccattgtccgtcatcttctagtcatgttttgtttgccttagcttggttgccat-A--T--C---CAGTTT-CATTGGTGA-----CTGAAGACTGAAGACT----TAG-G----T---A----C---AGA-C-CA--AGTC-AGA------AGAACCACTGGCGTTTTAC-AGTAAC-C----AA-CTATGTCA
gi|12 : tgaattggatttcccattactatgcagccatgaagtatgtagtttaaacaaaacgcGCTGTGAGA-G-A-AGA-GCCATC-C-T----------A---CAGC-AT-CT-TAGAC------AACTTGGCCATAGAGGAT------CC
gi|13 : tcattGA-G-G-TAA-GTGGTT-T-T--GA--GTGGA---CAAT-GT-CT-T-GAC------CACTCTGCCAGGGTGGAC------CCC-----Atttttaaaaataaatgactctagaataggtgcaatttattgaatagtatacaacaaacataacatataactaaattgaaaat
gi|14 : TAAC-TGGCAAA-CTTTCTCACAT-AAGTTTTTTTAC---CGAG-CTAGACTCA-A-----------------TGAGA-G-G-AAT-GTATTCAT-T--AAACG---A---CGAC-GT-CT-TAGAA------CATTTGGCGACAGAGGAT------TCCGT---AAA-AGAGAGATAATA--AAgcagtgatgtaacatgtacatgtatattggggctgtaaaaatgccagtgtaacacaatatgtaaaatgtttacat
gi|15 : AGC-TGG-AAGGCTTCCTCACATGAAAAATCCGAAGTACCCAGACGGTATTTG-AACC------CACAGCGGTGAGG-G-GCTGA-G-AGTT-TAC--AA--GTCCA---TGAC--C-ATATAAAC------TGCTCGGCCACAGAGG-C------CCC-----AAtac
gi|16 : TAATTCTTTCTTTTCGGCTTTTAATATCTTG-AAATGG-AGTT-AAACGCC-ACTTTCA-------AAACACA---AAGTTTATAATTTATAT-AGC-C-A--T------CAGTAT-GACTGGTAGTTGCCATGGAGAC------CC----C
gi|17 : ATAT-GACACCAGTT--T---CAATTT-TATTGTTGG-----TGGAAGAC------CT----CA----------------C---AA----TA--AATCCAAA-T---TA-AAGCACTGTCCATCTGCTATTAAA-TGG-CA----TGCTCACATGAAATTTCTGAAC---CGAtg
gi|18 : gA-G-G-TAA-ATGAGG-T-T--GA--G---A---TGCC-GA-TC-TGGAC------CACTGGGCCAAGGCGGAT------CCC-----A
gi|19 : A-TTG-GGTT-AAACCCC-ATTT----------AAAC---T--CA-----------ATGC-AACAT-A--T--CAACCAGATT-TAATATCAG-----AGAAAGAT------AT----CGGTC----T---G---TT---GGA-CATG--AGTC-----TGAGTAGAACCAGCGTcaaggtattgtaatctaaatacaagtcatattttaaaataacattttatttgtt
gi|2 : AAATATTGATGTAAAGTAACAGAGTTAACTGGAATATATTGCACACGTTTGTTTGTA--TTGATTTTTTCTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------AAACATAT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A----CTGAG---TC---AGA-C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-A-TACTAA-TTGAT-GACCTTTTCACTTCAT
gi|20 : tGAGA-G-G-TGG-GTGGAC-T-T--TA--G---A---CA-C-TT-CTGTATAC------CACTCGGTGACGGAGGAtcatactctttctaagatgaaacaagaggttgccactaacg
gi|21 : ccataCAACTGCAAGGGTGACATG-G-TAA-GTGGTCAT-T--AACCA---C---CAGC-GG-CT-CAGAC------CACTCAGCTACAGAatcgcagcagcgtattaaaaagacataaat
gi|22 : tactgaatatttgtgaatttAA-GTGCTG-T-T--GA--G---A---CGGC-GC-CC-TAGAC------CATGTGATCACCGAGGGC------CCCTGGTAAGATACACGAA-
gi|23 : GCTG-----CATAT-GGCATTA----------AGTTT-TATTGGTGG-----AGGTAGAC------CTTTCACAG-GTAATT---G---GC---AAA-C-T-----TCAAGATTGAGTTGAACtaagatgtatttgaaaaa
gi|24 : -T--GA--A---A---CAAT-GC-CT-CCAAC------CACTCAGCCACAGGGGGC------TC------AAATAGAGAAA-AGTA--AACTTGATCAACACTTTCAATGCAT
gi|25 : -T-T--CA--G---A---CGCT-GC-CT-TAGAC------CTCTCAGTCACAGAAAACTCTCTTTCC-----AATTGTACAAA-TGTA--AA
gi|26 : -TAA-GTGGTC-A-T--TA--G---ATAGCAGC-GC-AT-TGAAC------CATTCGGCAATGGAGGAC------CCtattctataaattt
gi|27 : G-GA-TGGAGGT---AACACC-ATATTCA-------AAACATATTATAGGTTA-----TATAT-GG--T-G--A--C---CAGTAT-TATttatattttaaaagtttaaat
gi|28 : AAATATTGATGCAAAGCATCAAAGTCGATTGGAATATATTGCATA
gi|29 : aataAAATATTGATGCAAAGCATCAAAGTCAACAAGAATATATTGCATA
gi|3 : agaTTTTATTCTT---TTTT----TTT---AA-TGG-GGTT-TAACGTT-ATTTTGA-------ACA-ATTT--TATGTTA-----TATAT-GACAT-A--T--C---CAGTTT-TATAGGTGG-----AGGAATAC------CT----CAG-A------------------------------------------AAACCACCGCACTTCCGCAAGTAAC-TGGCAAA-CTTTCTCACATAAATTTTTTGGAG---CGAG-CGGGAAACG-AACCTGCGACCTTAGCAGTGAGA-G-G-TAA-GTGATC-T-T--GA--C---A---CGGC-AA-CT-TTGAC------CACTCGGCCACGG-GTAC------CCT-----A
gi|30 : taacttttttaataaaT----TTTGG-AG-TGG-GTTT-TAACACC-ATTTTCA-------ATACATTT--Ctttttgaataaaactaaaacatcgtgtattgttttgttttacaattttgattccaagttctaagttaaattaacattttaagttgtactaatgtacatatatgagatccgatttttcaatataaataaaacatttttattaaaaaca
gi|31 : TTT----TTTTG-AA-TGA-GGTT-TAAAGCT-ATTTTCA-------AAACAT
gi|4 : TAAACTCCATTGCAG-T--AATTTTCATCTTT---TGTT----T---G-AA-TGG-GCTT-TATCGCC-ATTTCCA-------ATACATTT--CAAGTTA-----TATAT-AGTAT-A--T--C---CTATTT-TATTGGTGG-----AGGAAGAC------CC----TAG-A-------------------A---TG--AATC-----TGAGTAGAACCGCCGTCCCTCCTCAGGTAAT-TGG-----------CACAT----TTTTT-------CG---CGGTACTCG-AACCTACGACCACAACGGTGAAA-G-G-TGC-ATGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAA------AACTCGGCCACGGAGGAC------CC
gi|5 : caattgctgcatgtttaaactcaatttcaaattgaacgtgatatttttattaaatcacaaactttttcTTTTGTTTTG---TTTT----TTTTGGAA-TGG-GGTT-TAACGCC-ATTTTCA-------CCACATTT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGAC------CT----CAG-A---------------------C-TG--AGTC-AGACTGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCgtcatcttatatgttagcgggacacacagaaacacaaagatacatgttc
gi|6 : TAAC-TGGCAAA-TTTTTTTATA----GTTT-----------------GGCTTG-AACCCACTACCACAGCAGTGAGA-T-G-TAA-GTGATC-T-T--GA--G---A---TGGC-AC-CT-TAGACCACAGGCACTGGGCCTCAGAGGA-------CCC-----ATGTAGACAacgtgttaaaatgtataaatgccataaatagtttgtaaaatttgcatttttgtttacaaatgcaaacttagaagatataatcgttgacaat
gi|7 : cttacaccagtat-----TATAT-AGTAT-G--C--C---TAACTG-TATTGGAAA-----AGAAAAAAA-----CT----CA------------------------C-TACAAATC-----TGAGTAGAACCAACATCCGTCCGCAA-TAACACGC-AAT-CCTTTTCACA------------------GAA-CG---CTTGTAAACTACAACCTCAATGTTGAGA-G-G-TAA-TTTGTCGT-TAGGC--G---A---CAGC-GC-CT-TAGAC------CACTCTGCCGCGGAGGAC------Ctacatctaaatatgtccactttgtaaatgacctccataaacatttcaagatttttttattttgatacaaat
gi|8 : ttagaatataatTCTTCTTTTTAA-TATT----TTTTT-AA-TGG---TTGCATCGTT-GTTTTCG-------AAACATAA--CGTATTA-----TATA---GTAT-AG-TAAC---CAGTTT-AATCATTAC-----AGGAAGGC------TT----TTG-A----T---GCATTCCTGAGA-C-TG--AAT--ACA-TAAATAACGCTACCATGATTACGCAAGGTAC-TGG-CAG-CTT
gi|9 : TTTTTTGTTTGT---TTGT----TTT---AA-TAA-GATG--AGCGCCCATATTCATCCCATCATAAATAT----GATTA-----AATATTGG----A--T--C---CAGTTT-TATCAGCAG-----AGGAATGC------AT----CAA-A----T---GCATTC---AAATC-TG--CATC---------CAGAATCACTAT--TT--ACAAGTAAT-TGG-AAT-TATTCCCCCATGA
blockSeqs : C C T G TA C GGC AATA TGG A A GC C TCCCATC A ATTA G TAATT T C CAGTTT . T TTGCC TGAAGA TTCA ATGCATTCCTGAGACTGAATACATA G T A CA GG G CCGAAGTAC A A T A T . C . A A AG GTGG TAG A G A CACAGG TCTCTT TGGTA AG CT C C A A G
blockSeqs : T A C . TG C AA . TG . . A . . A AT G . . C ATCAAC . T . A . ACTGAGTCAGACTGAGTCAGACTG C C . CA A G TTTTAC . G . A . . . . A . . GTCC . . . G . . GT TG .
blockSeqs : T . A . . TG . . A . . A TT G . . C AGTAAC . T . . . GTAATTGGCAAACTTCAAGATTG C C . CA A A CTGAAC . G . A . . . . G . . ACG . . . . . . . A .
blockSeqs : T A . . GG . . T . . A TT T . . C ATC . C . . . TCTGTTGGACATGAGTCTG C C . A A A TTGGAG . G . G . . . . . . . CCA . . . . . . .
blockSeqs : G . . TG . . T . . C TT A . . C ATC . T . . . ATGCATTCAAATCTGCATC C C . C A A TTGGAG . G . T . . . . . . . G . . . . . . .
blockSeqs : C . . TT . . T . . T TT G . . C GAC . T . . . GTACAGACCAAGTCAGA C C . A A G TTGGAG . G . A . . . . . . . G . . . . . . .
blockSeqs : G . . G . . T . . A AA T . . T ATC . T . . . CAATAAATCCAAAT C C . A A . TT . . . A . . . . . . . G . . . . . . .
blockSeqs : . . . . T . . T AT G . . C ATC . T . . . ACTGAGTCAGACTG A A . A T . . . . . A . . . . . . . G . . . . . . .
blockSeqs : . . . . T . . C A . . . T ATC . T . . . CTACAAATCTG . . . C G . . T . . . . . . . G . . . . . . .
blockSeqs : . . . . . A T . . T GCC . A . . . AATGAATCTG . A T . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . T . . . ATC . T . . . A . . . . . . . . . . G . . . . . .
blockSeqs : . . AT . C . . . . . . . . . . . . . G . . . . . .
blockSeqs : TA . . . . . . . . C . . . . . .
blockSeqs : . . . . . . . G . . . . . .
blockSeqs : . . . . . G . . . . . .
blockSeqs : . . . . G . . . . . .
blockSeqs : . . . G . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : TG* ATC******** ACTGANTCAGACTG**************************
originalCons : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNT--CAGGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAG-A----T---G---TC---AGA-C-TG--AGTC-AGA-TGAGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
finalCons : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNT--CAGGTTA-----TATAT-GGCATATC--------CAGTTT-TATTGGCGG-----AGGAAGAC------CT----CAGACTGANTCAGACTG--------------------------AGTAGAACCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
Alignments
lowQualScore : 22 111 111 1111111 11111111111 555555555555555555555555555555555 11111111 111111111 11111 111 11 1 1
lowQualScore : 0 3 1 1 00 33 1 555 8888 333 3 3 66 3 0000000 1 2 999 88888 3 1 44444444444 2 4 77777 6666 555 666666666666666666666666666666666 22222222 88888 2 1 0 3 99 66 9 0 999999999 4 2 4 1 2 2 2 2 0 6 2 22 777777 333 2 2 4 666666 666666 44444 222 33 5 5 1 1 1
lowQualScore : . . . . .. .. . ... .... ... . . .. . ....... . . ... ..... . . ........... . . ..... .... ... ................................. ........ ..... . . . . .. .. . . ......... . . . . . . . . . . . .. ...... ... . . . ...... ...... ..... ... .. . . . . .
lowQualScore : 7 8 0 0 00 55 0 666 5555 222 3 3 00 3 8888888 0 3 666 33333 1 4 99999999999 9 9 77777 5555 888 888888888888888888888888888888888 77777777 33333 5 6 9 1 55 00 5 7 777777777 4 9 4 6 7 7 5 4 1 7 1 99 555555 777 1 1 2 111111 888888 11111 000 88 0 0 0 0 0
consensus : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGTGG-----AGGAAGACCT----CAG---ACT--G----------A-----N-T-C---AGA-CTGAGT----A---GAA-----CCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
Reference ( family-786 ) : NAAATATTGATGCAAAGCATCAAAGTCGACTGGAATATATTGCATANGNTCCTTTGCAG-TTGATTTTTTNTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------ANACATNTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TATTGGCGG-----AGGAAGACCT----CAG---ACT--G----------A-----N-T-C---AGA-CTGAGT----A---GAA-----CCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATGAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCACAGCGGTGAGA-G-G-TAA-GTGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-AGTA--AACTTGATCGACNCTTTCANTNCAT
gi|1 : AACATATTTCA-AGGATCCTTTCCAGGTTGATTTTTTGGTTCT---TATT----TCT---AA-TTG-GGTT-TAACACG-ATTTTCA-------ACACATTTCA--TGTTG-----TA----GACAT-------T---CAGTTTGTATTG-CGG-----AGAAAGACCT----CAG---A---------------------A-T-C---AAT-CTTAGT----A---GAA-----CCACCGTC-----------AA---GA-AAA-CATTTTCGCATAAAGTTTAAGGAT---CTAG-CGTGACTCG-TATATACGGTCTCGGCGGTGATA-GAG-CAACGT--TC-T-G--GT--G---A---CGGC-GA-CT-CAGAT------CACTCGGCCATGCAACAC------CC
gi|10 : tttttgttagataaattattatcaaaagttagtatgatgtaagaggtggccgttatgtgtttgaatatatattgatacatactaatgctaagactttaaaaatggtactagaagcttcctcgcctgacgctcagcatttagagaagagttctaggtctggtcagcccagtgtcagtataatgtgactgggcggggtatcataccatgtgtttgcggcatgatactctagtgtgacagcgcttagaatactgtctcaagtagacaccgtcgcgatatgacttaaaaattgttaaaagcgacgctaaacaccatactacaacaacatactaatgctgttgttttgatttgatatgaagaatgactgcaacgttatacagtgtataaacttatttttaaaaatcatatttaagcaactgaagtataaCCTGCGGTCATAGCGATGAGA-G-G-CAT-ATAGT--T-T--GA--G---A---CAGCAGTGTT-TAGAC------GATTCGGCAACAAAGAAA------CCC-----t
gi|11 : aggaatatcttaaaatgaatctctgaagaaccattgtccgtcatcttctagtcatgttttgtttgccttagcttggttgccat-A--T--C---CAGTTT-CATTGGTGA-----CTGAAGACTG----AAG---ACTTAG----------G-----T-A-C---AGA-CCAAGTCAGAA---GAA-----CCACTGGCGTTTTAC-AGTAAC-C----AA-CTATGTCA
gi|12 : tgaattggatttcccattactatgcagccatgaagtatgtagtttaaacaaaacgcGCTGTGAGA-G-A-AGA-GCCATC-C-T----------A---CAGC-AT-CT-TAGAC------AACTTGGCCATAGAGGAT------CC
gi|13 : tcattGA-G-G-TAA-GTGGTT-T-T--GA--GTGGA---CAAT-GT-CT-T-GAC------CACTCTGCCAGGGTGGAC------CCC-----Atttttaaaaataaatgactctagaataggtgcaatttattgaatagtatacaacaaacataacatataactaaattgaaaat
gi|14 : TAAC-TGGCAAA-CTTTCTCACAT-AAGTTTTTTTAC---CGAG-CTAGACTCA-A-----------------TGAGA-G-G-AAT-GTATTCAT-T--AAACG---A---CGAC-GT-CT-TAGAA------CATTTGGCGACAGAGGAT------TCCGT---AAA-AGAGAGATAATA--AAgcagtgatgtaacatgtacatgtatattggggctgtaaaaatgccagtgtaacacaatatgtaaaatgtttacat
gi|15 : AGC-TGG-AAGGCTTCCTCACATGAAAAATCCGAAGTACCCAGACGGTATTTG-AACC------CACAGCGGTGAGG-G-GCTGA-G-AGTT-TAC--AA--GTCCA---TGAC--C-ATATAAAC------TGCTCGGCCACAGAGG-C------CCC-----AAtac
gi|16 : TAATTCTTTCTTTTCGGCTTTTAATATCTTG-AAATGG-AGTT-AAACGCC-ACTTTCA-------AAACACA-AA--GTTTATAATTTATAT-AGC-C-A--T------CAGTAT-GACTGGTAGTTGCCATGGAGACCC----C
gi|17 : ATAT-GACACCAGTT--T---CAATTT-TATTGTTGG-----TGGAAGACCT----CAC---AAT--A----------A-----A-TCC---AAA-TTAA------A---G--------CACTGTCCATCTGCTATTAAA-TGG-CA----TGCTCACATGAAATTTCTGAAC---CGAtg
gi|18 : gA-G-G-TAA-ATGAGG-T-T--GA--G---A---TGCC-GA-TC-TGGAC------CACTGGGCCAAGGCGGAT------CCC-----A
gi|19 : A-TTG-GGTT-AAACCCC-ATTT----------AAAC---TCA-------------ATGC-AACAT-A--T--CAACCAGATT-TAATATCAG-----AGAAAGATAT----CGG---TCT--GTTGG------A-----CAT-G---AGT-CTGAGT----A---GAA-----CCAGCGTcaaggtattgtaatctaaatacaagtcatattttaaaataacattttatttgtt
gi|2 : AAATATTGATGTAAAGTAACAGAGTTAACTGGAATATATTGCACACGTTTGTTTGTA--TTGATTTTTTCTTTTT---TTTT----TTTTG-AA-TGG-GGTT-TAACGCC-ATTTTCA-------AAACATATCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGACCT----CAG---ACT--GAGTCAGACTGA-----G-T-C---AGA-CTGAGT----A---GAA-----CCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCC-----AAATAGACAAA-A-TACTAA-TTGAT-GACCTTTTCACTTCAT
gi|20 : tGAGA-G-G-TGG-GTGGAC-T-T--TA--G---A---CA-C-TT-CTGTATAC------CACTCGGTGACGGAGGAtcatactctttctaagatgaaacaagaggttgccactaacg
gi|21 : ccataCAACTGCAAGGGTGACATG-G-TAA-GTGGTCAT-T--AACCA---C---CAGC-GG-CT-CAGAC------CACTCAGCTACAGAatcgcagcagcgtattaaaaagacataaat
gi|22 : tactgaatatttgtgaatttAA-GTGCTG-T-T--GA--G---A---CGGC-GC-CC-TAGAC------CATGTGATCACCGAGGGC------CCCTGGTAAGATACACGAA-
gi|23 : GCTG-----CATAT-GGCATTA----------AGTTT-TATTGGTGG-----AGGTAGACCTTTCACAGGTAATT--G----------GCAAACT-T-CA--AGA-TTGAGT----T---GAA-----Ctaagatgtatttgaaaaa
gi|24 : -T--GA--A---A---CAAT-GC-CT-CCAAC------CACTCAGCCACAGGGGGC------TC------AAATAGAGAAA-AGTA--AACTTGATCAACACTTTCAATGCAT
gi|25 : -T-T--CA--G---A---CGCT-GC-CT-TAGAC------CTCTCAGTCACAGAAAACTCTCTTTCC-----AATTGTACAAA-TGTA--AA
gi|26 : -TAA-GTGGTC-A-T--TA--G---ATAGCAGC-GC-AT-TGAAC------CATTCGGCAATGGAGGAC------CCtattctataaattt
gi|27 : G-GA-TGGAGGT---AACACC-ATATTCA-------AAACATATTATAGGTTA-----TATAT-GG--T-G--A--C---CAGTAT-TATttatattttaaaagtttaaat
gi|28 : AAATATTGATGCAAAGCATCAAAGTCGATTGGAATATATTGCATA
gi|29 : aataAAATATTGATGCAAAGCATCAAAGTCAACAAGAATATATTGCATA
gi|3 : agaTTTTATTCTT---TTTT----TTT---AA-TGG-GGTT-TAACGTT-ATTTTGA-------ACA-ATTTTA--TGTTA-----TATAT-GACAT-A--T--C---CAGTTT-TATAGGTGG-----AGGAATACCT----CAG---A-----------------------------------------------AAA-----CCACCGCACTTCCGCAAGTAAC-TGGCAAA-CTTTCTCACATAAATTTTTTGGAG---CGAG-CGGGAAACG-AACCTGCGACCTTAGCAGTGAGA-G-G-TAA-GTGATC-T-T--GA--C---A---CGGC-AA-CT-TTGAC------CACTCGGCCACGG-GTAC------CCT-----A
gi|30 : taacttttttaataaaT----TTTGG-AG-TGG-GTTT-TAACACC-ATTTTCA-------ATACATTTCtttttgaataaaactaaaacatcgtgtattgttttgttttacaattttgattccaagttctaagttaaattaacattttaagttgtactaatgtacatatatgagatccgatttttcaatataaataaaacatttttattaaaaaca
gi|31 : TTT----TTTTG-AA-TGA-GGTT-TAAAGCT-ATTTTCA-------AAACAT
gi|4 : TAAACTCCATTGCAG-T--AATTTTCATCTTT---TGTT----T---G-AA-TGG-GCTT-TATCGCC-ATTTCCA-------ATACATTTCA--AGTTA-----TATAT-AGTAT-A--T--C---CTATTT-TATTGGTGG-----AGGAAGACCC----TAG---AAT--G----------A-----A-T-C--------TGAGT----A---GAA-----CCGCCGTCCCTCCTCAGGTAAT-TGG-----------CACAT----TTTTT-------CG---CGGTACTCG-AACCTACGACCACAACGGTGAAA-G-G-TGC-ATGGTC-T-T--GA--G---A---CGGC-GC-CT-TAGAA------AACTCGGCCACGGAGGAC------CC
gi|5 : caattgctgcatgtttaaactcaatttcaaattgaacgtgatatttttattaaatcacaaactttttcTTTTGTTTTG---TTTT----TTTTGGAA-TGG-GGTT-TAACGCC-ATTTTCA-------CCACATTTCA--GGTTA-----TATAT-GGCAT-A--T--C---CAGTTT-TACTGGTGG-----AGGAAGACCT----CAG---ACT--G----------A-----G-T-C---AGA-CTGAGT----A---GAA-----CCACCGTCCTTCCGCAAGTAAC-TGG-AAA-CTTTCTCACATAAAGTTTTTGGAG---CGAG-CGGGACTCG-AACCTACGACCATAGCGGTGAGA-G-G-TAA-GTGATC-T-T--GA--G---A---CGGC-GC-CT-TAGAC------CACTCGGCCACGGAGGAC------CCgtcatcttatatgttagcgggacacacagaaacacaaagatacatgttc
gi|6 : TAAC-TGGCAAA-TTTTTTTATA----GTTT-----------------GGCTTG-AACCCACTACCACAGCAGTGAGA-T-G-TAA-GTGATC-T-T--GA--G---A---TGGC-AC-CT-TAGACCACAGGCACTGGGCCTCAGAGGA-------CCC-----ATGTAGACAacgtgttaaaatgtataaatgccataaatagtttgtaaaatttgcatttttgtttacaaatgcaaacttagaagatataatcgttgacaat
gi|7 : cttacaccagtat-----TATAT-AGTAT-G--C--C---TAACTG-TATTGG-AA-----AAGAAAA--------AA---ACT--C----------A-----C-TAC---AAATCTGAGT----A---GAA-----CCAACATCCGTCCGCAA-TAACACGC-AAT-CCTTTTCACA------------------GAA-CG---CTTGTAAACTACAACCTCAATGTTGAGA-G-G-TAA-TTTGTCGT-TAGGC--G---A---CAGC-GC-CT-TAGAC------CACTCTGCCGCGGAGGAC------Ctacatctaaatatgtccactttgtaaatgacctccataaacatttcaagatttttttattttgatacaaat
gi|8 : ttagaatataatTCTTCTTTTTAA-TATT----TTTTT-AA-TGG---TTGCATCGTT-GTTTTCG-------AAACATAACG--TATTA-----TATA---GTAT-AG-TAAC---CAGTTT-AATCATTAC-----AGGAAGGCTT----TTG---A-T--GC---------A-----T-T-CCTGAGA-CTGAAT----ACATAAATAACGCTACCATGATTACGCAAGGTAC-TGG-CAG-CTT
gi|9 : TTTTTTGTTTGT---TTGT----TTT---AA-TAA-GATG--AGCGCCCATATTCATCCCATCATAAATAT----GATTA-----AATATTGG----A--T--C---CAGTTT-TATCAGCAG-----AGGAATGCAT----CAA---A-T--GC---------A-----T-T-C---AAATCTGCATCC--A---GAA-----TCACTAT--TT--ACAAGTAAT-TGG-AAT-TATTCCCCCATGA