lowQualScore : 1111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 22222 1111 11 66666 66666666666666666666666666666666 44444444444 22 555555555555555 11111 1111111 11 1111 333333333333 1 7777777777777777777777777777777777777 7777777777777777777777777777777777777777 888888888888888888888888888888888 2222 111111 222222 22 1 1 11 888888888888888888888888 22 333 11111 111111111 8888888888888888888 4444444 55 222 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 6 6 5 3 00000 0 4444 88 99999 11111111111111111111111111111111 7 9 4 0 4 88888888888 666 99 4 2 888 1 0 2 222222222222222 0 66666 66 888 2 5 6666666 44 5 0000 999999999999 6 2222222222222222222222222222222222222 33 1111 1 5555555555555555555555555555555555555555 3 444444444444444444444444444444444 6 2 1111 1 999999 6 111111 5 7 44 5 00 5 5 6 3 0 6 5 00 6 8888 000000000000000000000000 777 2 777 4 77 7 666 0 11111 777 888888888 1111111111111111111 1 55 55 0 6 8 6666666 55 0 777 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000 6 6
lowQualScore : . . . . ..... . .... .. ..... ................................ . . . . . ........... ... .. . . ... . . . ............... . ..... .. ... . . ....... .. . .... ............ . ..................................... .. .... . ........................................ . ................................. . . .... . ...... . ...... . . .. . .. . . . . . . . .. . .... ........................ ... . ... . .. . ... . ..... ... ......... ................... . .. .. . . . ....... .. . ... . ................................................................................ . .
lowQualScore : 0 0 0 0 00000 8 6666 66 11111 00000000000000000000000000000000 0 8 4 9 4 99999999999 222 00 4 2 444 0 1 0 999999999999999 1 88888 99 888 9 0 2222222 00 1 1111 999999999999 0 3333333333333333333333333333333333333 33 9999 4 6666666666666666666666666666666666666666 9 999999999999999999999999999999999 7 5 5555 0 222222 7 000000 7 3 66 7 99 7 4 0 7 6 0 0 55 0 5555 111111111111111111111111 000 7 888 4 99 0 333 1 11111 888 222222222 2222222222222222222 5 55 55 3 0 9 7777777 00 4 888 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGATATTCGACCTGCTGTCNATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----TGTCTCTGGGTAAACAAACT------C----T----------T----G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAA-GGAAGACA-ACACACAGAACTC----G-----TATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACCGAAAAGAAAAACAGAAAAC---AAACAAATA----TAAC--GCC---ATACGAACAGAATGAAGCACGAAGGC-C-------TAC-CTTGTCACATTG---CATTTTGCAC------A--ACACGCCGTTTGAAT---AACTGAAGAATAGTCNNNNACACGCACACACAATGATTTAAAAATGATTGTGTCACTTTCTTG-TT-CTAAATGTGTTCATTTATCCTGTT--------ATCCGTGTCACGGTGA--T-T-A------AAATTCA---------G--CGTCTGCCGAAATNAACACATTT--TACACCGTTCG------TAAA-ATGTAC-CC-A-A-TCTTTAATTTGGCATGAAT-TATACTAATTATGTTTATGGTAATT-TAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACAT----GAT----T---TAC-----A-------CTT---ACCGA---A-TCAGAATTATTTCATCGTCGCCATGTTGGTCA-AAAAAGTAAATCTTCT-----AAATTA---AAT--------GGCGGACAC-TTTCC-GTT--A------TTCCGCA--AA--AAGTTCCCGGCNAGAAC-AC---AAAACATAGTCCCGACCTCGGAAGAAATATAGCTGC-GTTCTTAGGTCGTGGCGTTCCTACTGCTTAT-ANGCNANNCAAAT---ACTGTAACTAGT-TATTTTA-TA-GTAGTTGTTTAATGGTATCTGTAGCGACCGATACTATGT
Reference ( gi|1 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGTAAGTCAAACTCACAGTCCCATATTAGGTACCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTTGACCTTCTGTCAATTA-----TCTCAGGAGACAACAAATA--AGAAAGGG-AAACCTATACAGTGTGTCTCTGGGTAAACAAACT------A----T----------T----G----TGCGATTATTTGAATAGATATATGGTGCGTGGTATTGTCACATAAATATTTGAGAATGATTGCAAA-GGAAGACA-ACACACAGAACTT----T-----TATGTGG--GGAGAACCGAGAGAAAGAAA-AGTGAACCGAAAAGAAAAACCGAAAAC---AAAGAAATA----TAAC--GCC---ATACGAACAAAATGAAGCACGAAGGC-C-------TAA-CTTGTCACACTG---CATTTTG--C------A--ACAGGCCGTTTGAAT---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTCAAAAATGATTGTGTCACTTTCTTA-TT-CGAAATGTGTTCATTTGTCCTGTT----TG--ATCCATGTCACGGTG-------A------AAATTCA---------G--CGTCTGCCGAAATGAACACATTT--TTCACCGTTTG------TAAA-ATGTAC-CC-A-A-TCTTTAATCTGGCCAGAAT-TATACTAATTATGTTTATGGTAATT-TAATACGGAAACAATTCGATACCAACGACCATTGCATCCCTAACGCAT----GAT----T---T-------A-------CTT---ACTGA---A-TCAGATCTATTTCATCGTCGCCATGTTGAT-A-AAAAAGTAAATCTTCT-----AAATTA---AAT--------GGCGGACAC-T------TT--A------TTCTGCA--AA--AAGTTCCCGACAAGAATAAA---AAAACATAGT--CGACCTCGGAAGAAATATAACTTG-GTTCTTAGGTCGTGGCGTTCCAAATGCTTACCAGACAAAACAAATTTGACCATAAC-AGTGTATTCTATTACGTGTTTATTCAGCAATGTCTATA------GATATTATATGAATGCTA
gi|2 : AGTCCCACATTAGGTGCCAATTTTAA
gi|2 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaTTGGATATTTGACCTGCTGTCCATTA-----TCACATGAGACAACAAATA--AAAAAGAGTAAATCTATA-----TGCTTCTGGGTAAACAAACT------C----T----------T----G----TTCGATTATTTGAATAGAGCTATGGTGAGTGGTATTGTCAAATGGATATTTGCGAATGATTGTAAA-GGAAGACA-ACACACAGAACTC----G-----TATGAGG--GGAGACTTGAGAGAAAGAAA-AGTGAACCGAAAGGAAAAA----------------AATA----TAAC--GCC---ATAC-AAGAGAATGAAGCATGAATG--A-------TAACCTTGTCACATTA---CATTTTGCAC------A--ACA-CCCGTTTGAAT-----------------CACACACACACACACACAATGATTTAAAAATGATTGTG--------TTA-TC-C----TG-------TTGT--------------ATCCGTGTAACGGTGATCTGTAA------AAATTCA---------G--CGTCTGCCGAAATTAACACATTT--TACACCGTTTGTAAAATTAAA-ATGTAC-CCAA-A-TCTTTAATTTGG-CAAACT-TATACTAATTATGTTTATGGTAATC-TAAAACGGAAATAAATCAAAATCGACCACTATTGCATCCTCAGCACATTATAAAT----A---TACA----A-------CTT---ACCGT---A-TCAGAATTATTTCATCGTCGACATATTGGTCA-AAAAAGTAAATCTTCT-----AAATTA---A---------------ACAC-T------TT--CCCGTTTTTCCGCA--GA--AAGTTCCCTGCTAGAAC-AC---AAAGCTTAGTCCCAAGCTCGAAAGAAATATAG-TTGCGTTCCTAGGTCGTGGTATTCtgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggatttggatatttgacctgctgtccattatcacatgagacaacaaataaaaaagagtaaatctatatgcttctgggtaaacaaactcttgttcgattatttgaatagagctatggtgagtggtattgtcaaatggatatttgcgaatgattgtaaaggaagacaacacacagaactcgtatgaggggagacttgagagaaagaaaagtgaaccgaaaggaaaaaaatataacgccatacaagagaatgaagcatgaatgataaccttgtcacattacattttgcacaacacccgtttgaatcacacacacacacacacaatgatttaaaaatgattgtgttatcctgttgtatccgtgtaacggtgatctgtaaaaattcagcgtctgccgaaattaacacattttacaccgtttgtaaaattaaaatgtacccaaatctttaatttggcaaacttatactaattatgtttatggtaatctaaaacggaaataaatcaaaatcgaccactattgcatcctcagcacattataaatatacaacttaccgtatcagaattatttcatcgtcgacatattggtcaaaaaagtaaatcttctaaattaaacactttcccgtttttccgcagaaagttccctgctagaacacaaagcttagtcccaagctcgaaagaaatatagttgcgttcctaggtcgtggtattcat
gi|8 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaagtcccacattaggtgccaattttaatgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggatTTGGATATTCGACCTGCTGTCAATTAATTTATCTTAGGAGACAACAAATACAAAAAAGGG-CAACATATA-----TGTCTCTGGGTTAACAAACT------C----T----------TACAAG----TGTGATTATTTGAATAGATCAATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAA-GGAAGACA-CCACACAGAACTCG---TAGTCGTATGTGG--GGAGACTCGAG---AAAAAA-AATGAACCAAAAAG---------AAAC---AAATAA--------AAC--GCC---ATACGAACAAAATGAAGCACGAAGGC-C-------TAC-CTTGTCACATTG---CATCCT---C------A--ACAat
gi|16 : ttcagggacttgaacctatgatcgtttgttaacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaacttacatgtatcgtaaacagggacattttgatATTA-----TCTCAAGAGACAACAAATA--AAAAAGGGTACACCCATA-----TGTATCTTAGTAAACAAACT------C----T----------T----G----TGCGAGTATTTGAATAGATCTATGGT------------CACATGAATATT-GAGAATGATTGTAAA-GGAAAACA-ACATACATAACAC----G-----TATGTGG-----------AGAGAAAGAAA-A---AAC--------AAAACAGAAAAG---AAACAAATA----TAAAAGGCC---ATACGAACAAAATAAAGTACGAAGGC-C-------TAC-CTTGTCACATTG---CATTTTGCAC------A--ACAAGCCGTcatggt
gi|18 : ccATTA-----CCTCAGGAGATAACAAATG--AAAAAGTGTAAACCT-----GTATGTCTCTGTGTAAACTAGCT------C----T----------T----G----TGCGATTATTTGAATAGATATATGGTGTGTGACATTGTCACATGAATATTTGAGAATGGTGGTAAA-GGAAGACA-ACATACAGAACTC----G-----TATGTGG--AGAGAA---AGAAAAATAAA-A
gi|11 : ccA-----TCTCAGGAGACAACAAA-------ACCGG----CCTATATA-----TCTCTGGGTAAATACACT------C----TTTAAAGTCCGT----G----TGCAGTTATTTGAACAGATCTATAGTGCGTGTTATTGTCACATGGATATTTGAGAATGATTGCAAAGGGAGGACA-ACACACATAATTC----G-----TATGTGG--GGAGACTCGAGAGAATGAAA-TGTGAATCGAAAAGAAAAACAGAAAAG---AAACAAAAA----GAAC--GCC---TTACGAACAGAATGAAGCACGAAGGC-C-------TAC-CTTGTCACATTT---AATTTTGCAC------A--ACACGCAGTTTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTATGTCGCTTTAATGTTT-CTTAATGTGTTCATTTATCCTGTT--------ATCCGTGTCATGGTG-------A------
gi|6 : GGT-AAACCTATATAATATGTCTCTGGGTAGACAAACTCTTTAGAGTTCT----------T----G----TGCGATTATTTGAATACATCTATGTTGCGTGGCGTTGCCACATGACTAGTTGAGAATGATTGCAAA-GGACGACA-ACAC-CTGAACT---------------------------CGAGAGTAAGAAA-GGTGAAACGAAATGAACAACAGAAAAG---AAACAAATA----TAAC--GCC---ATCCGAACATAATAAAGCACGAAGTC-C-------TAC-TTTGTCACATTT---GATTTTG--C------ACTACACGCCGTTTAAAT---------------------TACATGCACACACAATGATTT-AAAATTATTATGTAACT------------AAATGTGTTCATTTATCCTGTTATCCTGTTATCCATGTCACGATGACATATCA------AAATTCG---------G--CGCCTGCCGAAATGAACACATTT--TACATCGTTCG------TAAA-ATGTACACA-A-A-TCTCTTATTTGGCATAAAT-TTTAA-AATTATGTTTATGGCAATT-TAAAACGGAAATAATTCAATACCGACTAACATTGCATCCTCAACACAC----GAT----T---T-------A-------CTT---At
gi|3 : ttaaactactgacatacatttatctacttacatgtttggtacacaatgtgacatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGG-AAACATATA-----TGTCTCTAGGTTAACAAACT------C----T----------T----ACAAATGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGCATATCTGAGAATGATTGCAAA-GGATGACA-ACACACAAAACTTGTAGTCG---TATGTTG--GGAGACTCGAGAGAAAGAAA-AATGAACCGAAAAGAAA---C--AAAC----------TA-----AAC--GCC---ATACGAACCAAATGAAGCATGAAAGC-C-------TAC-CTTGTCACATTG---TATCTTGCAC------A--ACACACCGTTTGAAT---aaacttaccacatcaga
gi|15 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTAAACTAATT------C----T----------TTA--G----AGCGATTGTTTGAACAGATATGT--TGCGTGATATTGTTACAT--------GAGAATGTTTTCAAA-GGCAGACG-ACACACAGAACTC----G-----CATTTGG--GAAGA--CTAGAGAGAAAAA-AATGAAAC---AGGAAAGAC-----AC-------AAATA----GAAC--GCCTCGGTACGAATACAATGAAGTATGAATGC-CTACCTTGTAA-CTTGTCTCAATT---CTTTTTG--TACAATAA--ACAAGCCGTTtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|19 : aaagtgtatgattgtttcttggaaaagtTTTGAATA--TATATGGTGCGTGGTATTGTCACATGAACATTTGAGAAAGA---CAA-------ACATGCACACAGAACTC----G-----TATGCGGAAGGAAAA-TGAGGCGAATAGATAGTGAA---AAAAGAAGAA---AAAACAGGAAAGAAATAAGTGTAAC--GCC---Acct
gi|7 : GGACAGAATAAAGCCTGAAGGCGC-------TAC-CTTG-CAGTCTGTCCCATTTTA--T-----------------TTTGAAC---AACTGAAGAATAGTTCGTGTTTGGATTACACAC--ACACAAAACTGATTATGCAAATTTCC--------AACTGTGTTTATGTATCCTGTT--------ATCCGTGTGACAGTG-------ACCTGTCAGATTCATTTGTTTTAGTTCGTCTGCCGAAATGGACACATAC--AACACAGCTCG------TTAATATGTAC-AG-ATA-TTATTTATTTCGC-AGTATATATACTATTTATATTTATGGTATTTCTGAC-CGGGAATAATTCGAAAATGACTATAATTACATCCTCAATACAT----GAT----T---T-------G-------CTTACAACTGACCGATTCAGAATTATTTTATCATCGCTTTTTT--T--------GTCATTTTTTTCTGCAAAAT------AT--------GGCGGACGCATACGG--TT--ATGT---TTCTG----AA--AAGCTCCCGGCAAAAaa
gi|13 : tTGATTTAAAAATGATTGTGTCAATTTCTTGTTT-CTAAATATGTGC--------------------ATCCGTGTCACGGTGACCTGTCA------AAGTTCA---------G--CGTCTGCCGAAATCAACATATTT--TACACCGTTCG------TAAA-TTGTAC-CCAA-A-TCTTTAATTTAGCATGAAT-TATAATAATTATGTTTATGGCATTT-TCAAACGGAAATAATTCAACACCGACTACCATTCCATCCTCAACACAT----GAT----T---TACTTTCAA-------CTT---ACCGA---A-TCAGAATTATTTCATTGTCGCCATGCTGGT-CTAAAAAGTAAA---TCT-----AAATTA---AAT--------------TAA-A------TT--A------TATTGAATTAATTAAGTTCCCAGC-----TGAACTCAAAACACAGTCCCGACCTCGGATGAAATATAt
gi|3 : cacTGATTTATAAATGAATGTGTCTCTTTGTTG-TTTCTAAACGTGTTCATTTATCCTGTT----GT--ATGCGTGTCACGATG-------A------g
gi|9 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTGTGTCACTTTCTTT-TTTCTTAATGTGTTCAT--------------------CCGTGTCACGGTG-------A---------------------------CCTGTCAA--------CATTT--AACACCGTTCG------TAAA-ATGTAC-CC-A-AATCTTTAATATGGCATGAAT-TATACCAATTGTGTTGATGGTAATT-CAAAACGGAAATAATTCAATACCGACTACCATGGCATCTTCAACACAT----GAT----TAGCTTACA---A-------CTT---ACCGA---A-TCAGAATTATTTCACCGTCGCCATACTGGTCA-AAAAAGTAACTCTTCT-----AAATTA---AAT--------GGCGGACAC-TTTCCAGTT--A------TTCCGCA--TA--AAGTTCCCGGCAAGAAC-AC---AAAACATAGTCCCAGTCTCGGAAGAAATATTACTGT-GTTCTTAGGTGGTGACcctgtcaccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|14 : acacacacacacacacaaAATCAA-ACATTTGTTTAAACGTTTG------TAAA-ATGTAC-AC-ATA-TTTTCAATTTGGCATAAGT-GATAATAATCATGTTTATGGTAATT-GAAAACGGAAATGATTCATTACCGGCTACAATTGCATCCTCAACAGAT----GGT----T---TACTTACAA-------CTT---ACCGA---T-TCAGA-ATATTTTA--------ACGTTGGT-ATAAAAAGTAAATATTCT-----AAATTA---AAT--------GGCGGACGCATATCGG-TT--A------TTCTTTA--AA--CATTTCCCGGCAAAAAC-AT---AAAACATAGTCCCGCCCTAGAAAGAAATAT-ACTTGAGTTATCAGATCGCGGCGTTCCaggagggtattcaatacgcccattatgaacgacc
gi|12 : g-TCTTAAACTTGGCATGAAT-TATACTAAATATGTTTATGGTAATC-TAAAACGGAAATAAATAAATACCGACTACCATTGCATCCTTAACACGT----GATGTACT---TACA----A-------CTT---ACCGA---A-TCAGAATTATTTCATCGTTGCCATGCTGGTCG-AAAAAGTAAATCTTCT-----AAATTAGGCAGTGACATTTAGGCTGACAC-T------TTCCAGTTT--TTTCGCA--AC--AAGTTCCTAGCTAGAAC-AC---AAAACATAGTCCCGACCTCGGAAGAAATAAAGCTGC-GTTCTAAAGTCGTGTTGTTCCTACTG-TTAT--G--TATACAAAT---ACTGTAACTAGT-TATTTTA-TA-GTAGTTGTTTAATGGTATCTGTAGCGACCGATACTATGta
gi|3 : CCATTGCATCCTCAACACAT----AAT----T---T-------AATCACAACTT---ACCGA---A-TCAGAGATATTTCATCGTCGCCATGTTGGTCA-AAAAAGTAAATCTTAT-----AAATTA---AAA--------GGTGGATAC-TTTCCCGTT--A------TTCCGCA--AA--AAAATCCCGGCTAGAAC-AC---AAAACATAGTCCCGACCTCCGAAGAAATATAGCTGC-ATTCTTTTGTAGTGATGTTCCTACTGCttacaaatact
gi|4 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttttaaataaagacttATTGCATCCTCAACACAT----GGT----T---T-------AATCACAGCTT---ACTGA---A-TCAGAGTTATTTCATCGTCGCCATGTTGGTCA-AAAAAGTAAATCTTAT-----AAATTA---AAG--------GGTGGACAC-TTTCCCGTT--A------TTCCGCA--AA--AAAATCCCGGCTAGAAC-AT---AATACATAGTCCCGACCTCGGAAGAAATATAGCTGC-GTTCTTAGGTCGTGATGTTCCTACTGC--A--ATGCAAACCAAATaatgcaaaccacaaatac
gi|5 : ATTGCATCCTCAACACAT----AAT----T---T-------AATCACAACTT---ACCGA---A-TCAGAGATATTTCATCGTCGCCATGTTGGTCA-AAAAAGTAAATCTTAT-----AAATTA---AAA--------GGTGGATAC-TTTCCCGTT--A------TTCCGCA--AA--AAAATCCCGGCTAGAAC-AC---AAAACATAGTCCCGACCTCCGAAGAAATATAGCTGC-ATTCTTTTGTAGTGATGTTCCTACTGCacacaacatcatgacatctgtcctttatatcgatataagacttgatattagacagcagcgtgtatttatttgtggaaaatggataagacgtggtagataaagaaacatcacgtatataaatgcataagataaaaattgaaaattgatgatcatcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcacacgaaaaaggttttttgaatatatagtaaaaccttcctttaccaatgctaaaatgtgacaaactatttgtaatgggaaccaattgataacaaaataaacagatcatcctatgggaggatgcgtattcttgacttttctaaatatttgttgatggttttcattattattacgtttaaaaacaaatatgtttcttctctctgttcagagaatcaaactaaatattcataaaaacatattattattatatgcatccgattataatcaagtcagtatgcttttttattgataagtataagatgataatgagatgaaatatta
gi|20 : CGGATA-------------A------TTCCGCA--TA--AAGTTCCCGGCAAAAACACA---AAC-CATAGTTCCGGTTACGAAAAAAATATAACTGT-GTTCTTAGGTCGTGGCGTTCCaatgcaaaccacaaatacacaacatcatggcatatgtcctttatatcgatatgagacttgatatcagacagcggcgtgtatttatttgtggaaaatggaaaggacatggtagataaagaaacatcacgtatataaatacatatgatgaaaatagaaaattgatgatcgtcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcaaacgataaagtattttttaatatatagtaaacttttctttaccaatgcttatatgtgacaaactatttgttatgagaaccaattgataacaaaataaacagaccatcctatggaaggatgcgtattcttgacttttctaaacagttgttgatggttttcattattattacgcttagaaacaaatatgctgcttctctctgttcagagaatcaaactatatattcatcaacaaatattactataggcatccgattataatataatccagtcagtatgcttttttattgataagtataagatgataatgagatgaaata
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AAAGTAGCAAATTGATTGATAACTCAGTGTGTTGTAAAAACTAGAGTTTAACATATTCGCTAGAGGTTAAATGTTATCTCACACACGAAAAAGAAGTATTTTTGAATATAAGACAAGGCCTTTCTTTAACGTGCAAAGGGTTAGTGACACAAATGTAATGAAAGCCAACTGAGTACAAAATAAACTGACCATCCTATGTAGGGATGTGTATTCTAGATTTTTAAACATTTAATTATGATTTTCCTTATTACTACATTAAGAAACAATATGGTTCAAATGTTAAGTTCATTCTATATGCTAGGAGACTCAAACTGACACTTTTATTCTTATAGTCTCCATTTATAATGCAGACAGTATGATTATTTTAATGATAATTATAAGAGATACATGGGATGAAATATGAG
Unaligned ( gi|17 ): TATTATAGACTTGTCTAAACAATTGATTATGGTTTTCATTTTTACTATTTAAAGAAACAATTTGGTTCAATTTTAAGTTACTTCTCTCTGTTAAAAGATTCAAACTGACTATCCATAAAATAAATATTCTTATAAGCATACAATCATAATCCAGACAGCATGCCTAAGATAAGAATGATTATAAGGTGATAAATGAGGTGAAAT
Unaligned ( gi|21 ): GAAGATGACTTCCTCAACATGATCTAATTACGACTTATAGATGTAGAATTAGTTTATCTTCGCTTTGTTTTTC
Unaligned ( gi|22 ): AACTACTGACATACATTTCTCTCCTACATGTTATCCACAATGTGA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111
lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111 11111111111 555555555555555 222222 11111 111 111 11111 0000000000000000000000000000 2222222 3333333333333333333333 55555555555555555555555555555555555555 111 111111 111111 6666666666666666666 111111111 2 666666666666666 111 1 2 2222 222222
lowQualScore : 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 1 66666 99 7 0 66666666666 555555555555555 5 4 4 333333 888 1 4 4 1 444 0 66666 22222 9 000 777 2 4 555 11111 33 9999 22 8888888888888888888888888888 6 1 1 666 8 2222222 0 0 5555555555555555555555 22222222222222222222222222222222222222 3 0 000 0 666666 5 333333 5 6 5 6666 1111111111111111111 1 2 777 777 555555555 4 4 0 777777 55 1 4 000000000000000 444 5 0 2222 2 888888
lowQualScore : ....................................................................................................................................... . . ..... .. . . ........... ............... . . . ...... ... . . . . ... . ..... ..... . ... ... . . ... ..... .. .... .. ............................ . . . ... . ....... . . ...................... ...................................... . . ... . ...... . ...... . . . .... ................... . . ... ... ......... . . . ...... .. . . ............... ... . . .... . ......
lowQualScore : 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 0 77777 22 1 1 00000000000 777777777777777 0 0 0 000000 000 6 1 0 4 111 9 77777 44444 4 888 888 7 4 666 11111 77 4444 55 8888888888888888888888888888 7 7 4 000 8 6666666 5 1 0000000000000000000000 66666666666666666666666666666666666666 0 7 000 7 444444 7 999999 0 5 0 5555 1111111111111111111 5 6 000 000 555555555 0 0 0 111111 00 0 0 222222222222222 000 5 0 0000 5 000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTCGACCTGCTGTCCATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----T-----GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACCGAAAAG----AAAAACAGAAAAGAAACAAATAT--AACGCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACACGCCGTTTGAAT---AACTGAAGAATAGTCNNNN-----AC-ACGCACACACAATGATTTAAAAATGATTGTGTCACTTTCTTG-TT-CTAAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCACGGTG----A----T---C----AAAATTCA---------G--CGTCTGCCGAAATNAACACATTT---TACACCGTTCG------TAAA-ATGTAC-CC-A-A-TCTTTAATTTGGCATGAAT-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACAT----GAT----TTA----C-----A-CTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACAC-TTT-CC-GTT--A---TTCCGCAAA--AAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGCTTA--ATGCAAACNACAAAT---ACCGTAACTAGTGTATTCTATTACGTGNTTGTTCAGCGGTGTCTGTAGCGACCGATACTATGT
Reference ( family-774 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGATATTCGACCTGCTGTCNATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----T-----GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACCGAAAAG----AAAAACAGAAAACAAACAAATAT--AACGCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACACGCCGTTTGAAT---AACTGAAGAATAGTCNNNN-----AC-ACGCACACACAATGATTTAAAAATGATTGTGTCACTTTCTTG-TT-CTAAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCACGGTG----A----T---T----AAAATTCA---------G--CGTCTGCCGAAATNAACACATTT---TACACCGTTCG------TAAA-ATGTAC-CC-A-A-TCTTTAATTTGGCATGAAT-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACAT----GAT----TTA----C-----A-CTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACAC-TTT-CC-GTT--A---TTCCGCAAA--AAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGCTTA-TANGCNA--NNCAAAT---ACTGTAACTAGT-TATTTTA-TA-GTAGTTGTTTAATGGTATCTGTAGCGACCGATACTATGT
gi|1 : AGTCCCATATTAGGTACCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTTGACCTTCTGTCAATTA-----TCTCAGGAGACAACAAATA--AGAAAGGG-AAACCTATACAGTGT-----GTCTCTGGGTAAACAAACTATT----------G----TGCGATTATTTGAATAGATATATGGTGCGTGGTATTGTCACATAAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TTTTATGTGG--GGAGAACCGAGAGAAAGAAA-AGTGAACCGAAAAG----AAAAACCGAAAACAAAGAAATAT--AACGCC---ATACGAACAAAATGAAGCACGAAGGC-CTAACTTGTCACACTG---CA-----TTTTG--C----AACAGGCCGTTTGAAT---NNNNNNNNNNNNNNNNNNN-----NN-NNNNNNNNNNNNTGATTCAAAAATGATTGTGTCACTTTCTTA-TT-CGAAATGTGTTCAT--------TTGTCCTGT--TTGATCCATGTCACGGTG------------------AAAATTCA---------G--CGTCTGCCGAAATGAACACATTT---TTCACCGTTTG------TAAA-ATGTAC-CC-A-A-TCTTTAATCTGGCCAGAAT-TATACTAATTATGTTTATGGTAATTTAATACGGAAACAATTCGATACCAACGACCATTGCATCCCTAACGCAT----GAT----TT-----------A-CTTACTGAATCAGATCTATTTCATCGTCGCCATGTTGAT-AAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACAC-T-------TT--A---TTCTGCAAA--AAGTTCCCGACAAGAATAAAAAAACATAGT--CGACCTCGGAAGAAATATAACTTGGTTCTTAGGTCGTGGCGTTCCAAATGCTTACCAGACAA--AACAAATTTGACCATAAC-AGTGTATTCTATTACGTGTTTATTCAGCAATGTCTATA------GATATTATAT
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttgtaagtcaaactcacA-----TCTCAGGAGACAACAAA-------ACCGG----CCTATA-----T-----ATCTCTGGGTAAATACACTCTTTAAAGTCCGTG----TGCAGTTATTTGAACAGATCTATAGTGCGTGTTATTGTCACATGGATATTTGAGAATGATTGCAAAGGGAGGACA-ACACACATAAT------TCGTATGTGG--GGAGACTCGAGAGAATGAAA-TGTGAATCGAAAAG----AAAAACAGAAAAGAAACAAAAAG--AACGCC---TTACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTT---AA-----TTTTGCAC----AACACGCAGTTTGAATNNNNNNNNNNNNNNNNNNNNNN-----NN-NNNNNNNNNNNNNNNNNNNNNNNTGATTATGTCGCTTTAATGTTT-CTTAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCATGGTG----A----T---gaatgcta
gi|12 : -TCTTAAACTTGGCATGAAT-TATACTAAATATGTTTATGGTAATCTAAAACGGAAATAAATAAATACCGACTACCATTGCATCCTTAACACGT----GATGTACTTA----CA----A-CTTACCGAATCAGAATTATTTCATCGTTGCCATGCTGGTCGAAAAAGTAAATCTTCT---AAATTAGGCAGTGACATTTAGGCTGACAC-TTT-CCAGTT--T---TTTCGCAAC--AAGTTCCTAGCTAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATAAAGCTGCGTTCTAAAGTCGTGTTGTTCCTACTG-TTA-TG---TA--TACAAAT---ACTGTAACTAGT-TATTTTA-TA-GTAGTTGTTTAATGGTATCTGTAGCGACCGATACTATGT
gi|13 : CACTGATTTAAAAATGATTGTGTCAATTTCTTGTTT-CTAAATATGTGC------------------------ATCCGTGTCACGGTG----ACCTGT---C----AAAGTTCA---------G--CGTCTGCCGAAATCAACATATTT---TACACCGTTCG------TAAA-TTGTAC-CCAA-A-TCTTTAATTTAGCATGAAT-TATAATAATTATGTTTATGGCATTTTCAAACGGAAATAATTCAACACCGACTACCATTCCATCCTCAACACAT----GAT----TTA----CTTTCAA-CTTACCGAATCAGAATTATTTCATTGTCGCCATGCTGGTCTAAAAAGTAAA---TCT---AAATTA---AAT--------------TAA-ATT-AT-ATTGAA---TT-----AATTAAGTTCCCAGCT-GAAC-TCAAAACACAGTCCCGACCTCGGATGAAATATAGttacaaatact
gi|14 : AATCAA-ACATTTGTTTAAAC-GTTTG------TAAA-ATGTAC-AC-ATA-TTTTCAATTTGGCATAAGT-GATAATAATCATGTTTATGGTAATTGAAAACGGAAATGATTCATTACCGGCTACAATTGCATCCTCAACAGAT----GGT----TTA----CTTACAA-CTTACCGATTCAGAA-TATTTTA--------ACGTTGGTATAAAAAGTAAATATTCT---AAATTA---AAT--------GGCGGACGCATAT-CG-GTT--A---TTCTTTAAA--CATTTCCCGGCAAAAAC-ATAAAACATAGTCCCGCCCTAGAAAGAAATATACTTGAGTTATCAGATCGCGGCGTTCCTA
gi|15 : gGTAAACTAATTCTTTA--------G----AGCGATTGTTTGAACAGAT--ATGTTGCGTGATATTGTTACATGA--------GAATGTTTTCAAAGGCAG-ACG-ACACACAGAAC------TCGCATTTGG--GAAGACTAGAGAGAA--AAA-AATG----------------AAACAGGAAAGACACAAATAG--AACGCCTCGGTACGAATACAATGAAGTATGAATGC-CTACCTTGTAAC-TTGTCTCAATTCTTTTTGTACAATAAACAAGCCGTT
gi|16 : aaagtgtatgattgtttcttggaaaagtCCATTA-----TCTCAAGAGACAACAAATA--AAAAAGGGTACACCCATA-----T-----GTATCTTAGTAAACAAACTCTT----------G----TGCGAGTATTTGAATAGATCTATGGT------------CACATGAATATT-GAGAATGATTGTAAAGGAAA-ACA-ACATACATAAC------ACGTATGTG-----------GAGAGAAAGAAA-A---AAC------------AAAACAGAAAAGAAACAAATATAAAAGGCC---ATACGAACAAAATAAAGTACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACAAGCCGTcct
gi|18 : CCATTA-----CCTCAGGAGATAACAAATG--AAAAAGTGTAAACCTGTA-----T-----GTCTCTGTGTAAACTAGCTCTT----------G----TGCGATTATTTGAATAGATATATGGTGTGTGACATTGTCACATGAATATTTGAGAATGGTGGTAAAGGAAG-ACA-ACATACAGAAC------TCGTATGTG-----------GAGAGAAAGAAA-AATAAA
gi|19 : TTTGAATATAT--ATGGTGCGTGGTATTGTCACATGAACATTTGAGAAAGA---CAA-------ACATGCACACAGAAC------TCGTATGCGGAAGGAAAAT-GAGGCGAATAGATAGTGAA---AAAAGAAGAAAAAACAGGAAAGAAATAAGTGT--AACGCC---Aa
gi|2 : AGTCCCACATTAGGTGCCAATTTTAAaa
gi|2 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaTTGGATATTTGACCTGCTGTCCATTA-----TCACATGAGACAACAAATA--AAAAAGAGTAAATCTATA-----T-----GCTTCTGGGTAAACAAACTCTT----------G----TTCGATTATTTGAATAGAGCTATGGTGAGTGGTATTGTCAAATGGATATTTGCGAATGATTGTAAAGGAAG-ACA-ACACACAGAAC------TCGTATGAGG--GGAGACTTGAGAGAAAGAAA-AGTGAACCGAAAGG----AAAA-------------AAATAT--AACGCC---ATAC-AAGAGAATGAAGCATGAATGA-TAACCTTGTCACATTA---CA-----TTTTGCAC----AACAC-CCGTTTGAA-----------------TCACAC-----AC-ACACACACACAATGATTTAAAAATGATTGTGTTA---TCCTG-T-------TG--------------------------T--ATCCGTGTAACGGTG----A----T---CTGTAAAAATTCA---------G--CGTCTGCCGAAATTAACACATTT---TACACCGTTTGTAAAATTAAA-ATGTAC-CCAA-A-TCTTTAATTTGGCA-AACT-TATACTAATTATGTTTATGGTAATCTAAAACGGAAATAAATCAAAATCGACCACTATTGCATCCTCAGCACATTATAAAT----ATA----CA----A-CTTACCGTATCAGAATTATTTCATCGTCGACATATTGGTCAAAAAAGTAAATCTTCT---AAATTA---A---------------ACAC-TTTCCC-GTT--T---TTCCGCAGA--AAGTTCCCTGCTAGAAC-ACAAAGCTTAGTCCCAAGCTCGAAAGAAATATAGTTGCGTTCCTAGGTCGTGGTATTCtgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggatttggatatttgacctgctgtccattatcacatgagacaacaaataaaaaagagtaaatctatatgcttctgggtaaacaaactcttgttcgattatttgaatagagctatggtgagtggtattgtcaaatggatatttgcgaatgattgtaaaggaagacaacacacagaactcgtatgaggggagacttgagagaaagaaaagtgaaccgaaaggaaaaaaatataacgccatacaagagaatgaagcatgaatgataaccttgtcacattacattttgcacaacacccgtttgaatcacacacacacacacacaatgatttaaaaatgattgtgttatcctgttgtatccgtgtaacggtgatctgtaaaaattcagcgtctgccgaaattaacacattttacaccgtttgtaaaattaaaatgtacccaaatctttaatttggcaaacttatactaattatgtttatggtaatctaaaacggaaataaatcaaaatcgaccactattgcatcctcagcacattataaatatacaacttaccgtatcagaattatttcatcgtcgacatattggtcaaaaaagtaaatcttctaaattaaacactttcccgtttttccgcagaaagttccctgctagaacacaaagcttagtcccaagctcgaaagaaatatagttgcgttcctaggtcgtggtattcat
gi|20 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaagtcccacattaggtgccaattttaatgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggat--A---TTCCGCATA--AAGTTCCCGGCAAAAAC-ACAAACCATAGTTCCGGTTACGAAAAAAATATAACTGTGTTCTTAGGTCGTGGCGTTCCTACTGat
gi|21 : ttcatacggataTCCTCAACA--T----GATCTAATTA----CG----A-CTTATAGATGTAGAATTAGTTTATCTTCGCTTTGTTtaaggagggtatccaatacgtccattatgcgtgagcgacc
gi|3 : gaagatgactAAACATATA-----T-----GTCTCTAGGTTAACAAACTCTT----------ACAAATGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGCATATCTGAGAATGATTGCAAAGGATG-ACA-ACACACAAAACTTGTAGTCGTATGTTG--GGAGACTCGAGAGAAAGAAA-AATGAACCGAAAAG-------------AAACAAAC---TA---AACGCC---ATACGAACCAAATGAAGCATGAAAGC-CTACCTTGTCACATTG---TA-----TCTTGCAC----AACACACCGTTTGAAT---tttc
gi|3 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggATGATTTATAAATGAATGTGTCTCTTTGTTG-TTTCTAAACGTGTTCAT--------TTATCCTGTTGT--ATGCGTGTCACGATG----A----tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|3 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAAATAAAGACTTCCATTGCATCCTCAACACAT----AAT----TTAATCAC-----AACTTACCGAATCAGAGATATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAA--------GGTGGATAC-TTT-CCCGTT--A---TTCCGCAAA--AAAATCCCGGCTAGAAC-ACAAAACATAGTCCCGACCTCCGAAGAAATATAGCTGCATTCTTTTGTAGTGATGTTCCTACTGC--A--ATGCAAACCACAAAT---ACcctgtcaccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|4 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttATTGCATCCTCAACACAT----GGT----TTAATCAC-----AGCTTACTGAATCAGAGTTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAG--------GGTGGACAC-TTT-CCCGTT--A---TTCCGCAAA--AAAATCCCGGCTAGAAC-ATAATACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGATGTTCCTACTGC--A--ATGCAA--ACCAAAT---AC
gi|5 : ATTGCATCCTCAACACAT----AAT----TTAATCAC-----AACTTACCGAATCAGAGATATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAA--------GGTGGATAC-TTT-CCCGTT--A---TTCCGCAAA--AAAATCCCGGCTAGAAC-ACAAAACATAGTCCCGACCTCCGAAGAAATATAGCTGCATTCTTTTGTAGTGATGTTCCTACTGC--A--ATGCAAACCACAAAT---ACacaacatcatgacatctgtcctttatatcgatataagacttgatattagacagcagcgtgtatttatttgtggaaaatggataagacgtggtagataaagaaacatcacgtatataaatgcataagataaaaattgaaaattgatgatcatcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcacacgaaaaaggttttttgaatatatagtaaaaccttcctttaccaatgctaaaatgtgacaaactatttgtaatgggaaccaattgataacaaaataaacagatcatcctatgggaggatgcgtattcttgacttttctaaatatttgttgatggttttcattattattacgtttaaaaacaaatatgtttcttctctctgttcagagaatcaaactaaatattcataaaaacatattattattatatgcatccgattataatcaagtcagtatgcttttttattgataagtataagatgataatgagatgaaatatta
gi|6 : GGTAAACCTATA-----TAATATGTCTCTGGGTAGACAAACTCTTTAGAGTTCTTG----TGCGATTATTTGAATACATCTATGTTGCGTGGCGTTGCCACATGACTAGTTGAGAATGATTGCAAAGGACG-ACA-ACAC------C------T------------GA-ACTCGAGAGTAAGAAA-GGTGAAACGAAATG----AACAACAGAAAAGAAACAAATAT--AACGCC---ATCCGAACATAATAAAGCACGAAGTC-CTACTTTGTCACATTT---GA-----TTTTGCAC----TACACGCCGTTTAAAT---------------------T-----AC-ATGCACACACAATGATTT-AAAATTATTATGTAA------------CTAAATGTGTTCATTTATCCTGTTATCCTGT--T--ATCCATGTCACGATGACATA----T---C----AAAATTCG---------G--CGCCTGCCGAAATGAACACATTT---TACATCGTTCG------TAAA-ATGTACACA-A-A-TCTCTTATTTGGCATAAAT-TTTAA-AATTATGTTTATGGCAATTTAAAACGGAAATAATTCAATACCGACTAACATTGCATCCTCAACACAC----GAT----TTA----CTTAAAA-CTTACCACATCAGAacaacatcatggcatatgtcctttatatcgatatgagacttgatatcagacagcggcgtgtatttatttgtggaaaatggaaaggacatggtagataaagaaacatcacgtatataaatacatatgatgaaaatagaaaattgatgatcgtcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcaaacgataaagtattttttaatatatagtaaacttttctttaccaatgcttatatgtgacaaactatttgttatgagaaccaattgataacaaaataaacagaccatcctatggaaggatgcgtattcttgacttttctaaacagttgttgatggttttcattattattacgcttagaaacaaatatgctgcttctctctgttcagagaatcaaactatatattcatcaacaaatattactataggcatccgattataatataatccagtcagtatgcttttttattgataagtataagatgataatgagatgaaata
gi|7 : ttaaactactgacatacatttatctacttacatgtttggtacacaatgtgacatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACAGAATAAAGCCTGAAGGCGCTACCTTG-CAGTCTGTCCCA-----TTTTAT---------------TTTGAAC---AACTGAAGAATAGTTCGTGTTTGGATTACACACACACAA--------AACTGATTATGCAAATTTCC--------AACTGTGTTTAT--------GTATCCTGT--T--ATCCGTGTGACAGTG----A----CCTGT----CAGATTCATTTGTTTTAGTTCGTCTGCCGAAATGGACACATAC---AACACAGCTCG------TTAATATGTAC-AG-ATA-TTATTTATTTCGCA-GTATATATACTATTTATATTTATGGTATTTCTGACCGGGAATAATTCGAAAATGACTATAATTACATCCTCAATACAT----GAT----TTG----CTTACAA-CTGACCGATTCAGAATTATTTTATCATCGCTTTTTTTGTC-----ATT--TTTTTCTGCAAAAT------AT--------GGCGGACGC-ATA-CG-GTT--ATGTTTCTG--AA--AAGCTCCCGGCAAAA
gi|8 : tTTGGATATTCGACCTGCTGTCAATTAATTTATCTTAGGAGACAACAAATACAAAAAAGGGCAA-CATATA-----T-----GTCTCTGGGTTAACAAACTCTTACAA------G----TGTGATTATTTGAATAGATCAATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-CCACACAGAACTCGTAGTCGTATGTGG--GGAGACTCGAG---AAAAAA-AATGAACCAAAAAG-----------------AAACAAATAA--AACGCC---ATACGAACAAAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TCCT---C----AACACt
gi|8 : ttcagggacttgaacctatgatcgtttgttaacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaacttacatgtatcgtaaacagggacattttgatCATTGCATCCTCAACACAT----GGT----atggt
gi|9 : ttcagggacttgaacctatgatcgtttgttaacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaacttacatgtatcgtaaacagggacattttgatttggatattcgacctgctgtcaattaatttatcttaggagacaacaaatacaaaaaagggcaacatatatgtctctgggttaacaaactcttacaagtgtgattatttgaatagatcaatggtgcgtggtattgtcacatgaatatttgagaatgattgcaaaggaagacaccacacagaactcgtagtcgtatgtggggagactcgagaaaaaaaatgaaccaaaaagaaacaaataaaacgccatacgaacaaaatgaagcacgaaggcctaccttgtca-----AC-ACACACACACAATG---------------TGTCACTTTCTTT-TTTCTTAATGTGTTCAT------------------------CCGTGTCACGGTG----A----C-------------------------------CTGTCAA--------CATTT---AACACCGTTCG------TAAA-ATGTAC-CC-A-AATCTTTAATATGGCATGAAT-TATACCAATTGTGTTGATGGTAATTCAAAACGGAAATAATTCAATACCGACTACCATGGCATCTTCAACACAT----GATTAGCTTA----CA----A-CTTACCGAATCAGAATTATTTCACCGTCGCCATACTGGTCAAAAAAGTAACTCTTCT---AAATTA---AAT--------GGCGGACAC-TTT-CCAGTT--A---TTCCGCATA--AAGTTCCCGGCAAGAAC-ACAAAACATAGTCCCAGTCTCGGAAGAAATATTACTGTGTTCTTAGGTGGTGAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTAGCAAATTGATTGATAACTCAGTGTGTTGTAAAAACTAGAGTTTAACATATTCGCTAGAGGTTAAATGTTATCTCACACACGAAAAAGAAGTATTTTTGAATATAAGACAAGGCCTTTCTTTAACGTGCAAAGGGTTAGTGACACAAATGTAATGAAAGCCAACTGAGTACAAAATAAACTGACCATCCTATGTAGGGATGTGTATTCTAGATTTTTAAACATTTAATTATGATTTTCCTTATTACTACATTAAGAAACAATATGGTTCAAATGTTAAGTTCATTCTATATGCTAGGAGACTCAAACTGACACTTTTATTCTTATAGTCTCCATTTATAATGCAGACAGTATGATTATTTTAATGATAATTATAAGAGATACATGGGATGAAATATGAG
Unaligned ( gi|17 ): TATTATAGACTTGTCTAAACAATTGATTATGGTTTTCATTTTTACTATTTAAAGAAACAATTTGGTTCAATTTTAAGTTACTTCTCTCTGTTAAAAGATTCAAACTGACTATCCATAAAATAAATATTCTTATAAGCATACAATCATAATCCAGACAGCATGCCTAAGATAAGAATGATTATAAGGTGATAAATGAGGTGAAAT
Unaligned ( gi|22 ): AACTACTGACATACATTTCTCTCCTACATGTTATCCACAATGTGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111 11111111111 555555555555555 222222 3333333333333 111 11111 111111111111111111111111111 33333333 222222222 11111 3333333333333333333333333333333333 111 111111 111 6666666666666666666 111111111 2 44444 11 111 1 1 1 1 222222
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 66666 99 7 0 66666666666 555555555555555 5 4 4 333333 55 1 4 4 1 6666666666666 22 4 4 66 777 2 4 555 11111 33 9999 22 666666666666666666666666666 6 1 1 666 5 5 22222222 0 0 444444444 77777 7777777777777777777777777777777777 3 0 000 0 5 666666 5555 222 6 5 5 6666 1111111111111111111 1 2 777 777 888888888 4 4 777777 55 1 4 22222 0 66 444 5 5 5 5 1 888888
lowQualScore : .................................................................................................................................. . ..... .. . . ........... ............... . . . ...... .. . . . . ............. .. . . .. ... . . ... ..... .. .... .. ........................... . . . ... . . ........ . . ......... ..... .................................. . . ... . . ...... .... ... . . . .... ................... . . ... ... ......... . . ...... .. . . ..... . .. ... . . . . . ......
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 77777 22 1 1 00000000000 777777777777777 0 0 0 000000 55 6 1 0 4 9999999999999 88 4 7 11 888 7 4 666 11111 77 4444 55 999999999999999999999999999 7 7 4 000 4 6 22222222 5 1 222222222 66666 6666666666666666666666666666666666 0 7 000 7 7 444444 7777 444 5 0 0 5555 1111111111111111111 5 6 000 000 000000000 0 0 111111 00 0 0 44444 8 66 000 5 0 5 0 0 000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTCGACCTGCTGTCCATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----T-----GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACCGAAA-G----AAAAACAGAAAAGAAACAAA-TATAAC--GCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACACGCCGTTTGAAT---AACTGAAGAATAGTCNNNN-----AC-ACGCACACACAATGATTTAAAAATGATTGTGTCACTTTCTTG-TT-CTAAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCACGGTG----A----TC----AAA---ATTC-----AG--CGTCTGCCGAAATNAACACATTT---TACACCGTTCGTAAA-AT------GTAC-CC-A-A-TCTTTAATTTGGCATGAA-T-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACAT----GAT----TTA----C-----A-CTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACAC-TTTCCCGTT--A---TTCCGCAAA--AAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGCT-A--ATGCAAACCACAAAT---ACCGTAACTAGTGTATTCTATTACGTGNTTGTTCAGCGGTGTCTGTAGCGACCGATACTATGT
Reference ( family-774 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTCGACCTGCTGTCCATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----T-----GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACCGAAAAG----AAAAACAGAAAAGAAACAAA-TATAAC--GCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACACGCCGTTTGAAT---AACTGAAGAATAGTCNNNN-----AC-ACGCACACACAATGATTTAAAAATGATTGTGTCACTTTCTTG-TT-CTAAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCACGGTG----A----TC----AAA---ATTC-----AG--CGTCTGCCGAAATNAACACATTT---TACACCGTTCGTAAA-AT------GTAC-CC-A-A-TCTTTAATTTGGCATGAA-T-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACAT----GAT----TTA----C-----A-CTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACAC-TTTCC-GTT--A---TTCCGCAAA--AAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGCTTA--ATGCAAACNACAAAT---ACCGTAACTAGTGTATTCTATTACGTGNTTGTTCAGCGGTGTCTGTAGCGACCGATACTATGT
gi|1 : AGTCCCATATTAGGTACCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTTGACCTTCTGTCAATTA-----TCTCAGGAGACAACAAATA--AGAAAGGG-AAACCTATACAGTGT-----GTCTCTGGGTAAACAAACTATT----------G----TGCGATTATTTGAATAGATATATGGTGCGTGGTATTGTCACATAAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TTTTATGTGG--GGAGAACCGAGAGAAAGAAA-AGTGAACCGAAAAG----AAAAACCGAAAACAAAGAAA-TATAAC--GCC---ATACGAACAAAATGAAGCACGAAGGC-CTAACTTGTCACACTG---CA-----TTTTG--C----AACAGGCCGTTTGAAT---NNNNNNNNNNNNNNNNNNN-----NN-NNNNNNNNNNNNTGATTCAAAAATGATTGTGTCACTTTCTTA-TT-CGAAATGTGTTCAT--------TTGTCCTGT--TTGATCCATGTCACGGTG---------------AAA---ATTC-----AG--CGTCTGCCGAAATGAACACATTT---TTCACCGTTTGTAAA-AT------GTAC-CC-A-A-TCTTTAATCTGGCCAGAA-T-TATACTAATTATGTTTATGGTAATTTAATACGGAAACAATTCGATACCAACGACCATTGCATCCCTAACGCAT----GAT----TT-----------A-CTTACTGAATCAGATCTATTTCATCGTCGCCATGTTGAT-AAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACAC-T------TT--A---TTCTGCAAA--AAGTTCCCGACAAGAATAAAAAAACATAGT--CGACCTCGGAAGAAATATAACTTGGTTCTTAGGTCGTGGCGTTCCAAATGCTTACCAGACAAA--ACAAATTTGACCATAAC-AGTGTATTCTATTACGTGTTTATTCAGCAATGTCTATA------GATATTATAT
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttgtaagtcaaactcacA-----TCTCAGGAGACAACAAA-------ACCGG----CCTATA-----T-----ATCTCTGGGTAAATACACTCTTTAAAGTCCGTG----TGCAGTTATTTGAACAGATCTATAGTGCGTGTTATTGTCACATGGATATTTGAGAATGATTGCAAAGGGAGGACA-ACACACATAAT------TCGTATGTGG--GGAGACTCGAGAGAATGAAA-TGTGAATCGAAAAG----AAAAACAGAAAAGAAACAAA-AAGAAC--GCC---TTACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTT---AA-----TTTTGCAC----AACACGCAGTTTGAATNNNNNNNNNNNNNNNNNNNNNN-----NN-NNNNNNNNNNNNNNNNNNNNNNNTGATTATGTCGCTTTAATGTTT-CTTAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCATGGTG----A----Tgaatgcta
gi|12 : -TCTTAAACTTGGCATGAA-T-TATACTAAATATGTTTATGGTAATCTAAAACGGAAATAAATAAATACCGACTACCATTGCATCCTTAACACGT----GATGTACTTA----CA----A-CTTACCGAATCAGAATTATTTCATCGTTGCCATGCTGGTCGAAAAAGTAAATCTTCT---AAATTAGGCAGTGACATTTAGGCTGACAC-TTTCCAGTT--T---TTTCGCAAC--AAGTTCCTAGCTAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATAAAGCTGCGTTCTAAAGTCGTGTTGTTCCTACTGTT----ATGTA---TACAAAT---ACTGTAACTAGT-TATTTTA-TA-GTAGTTGTTTAATGGTATCTGTAGCGACCGATACTATGT
gi|13 : CACTGATTTAAAAATGATTGTGTCAATTTCTTGTTT-CTAAATATGTGC------------------------ATCCGTGTCACGGTG----ACCTGTC----AAA---GTTC-----AG--CGTCTGCCGAAATCAACATATTT---TACACCGTTCGTAAA-TT------GTAC-CCAA-A-TCTTTAATTTAGCATGAA-T-TATAATAATTATGTTTATGGCATTTTCAAACGGAAATAATTCAACACCGACTACCATTCCATCCTCAACACAT----GAT----TTA----CTTTCAA-CTTACCGAATCAGAATTATTTCATTGTCGCCATGCTGGTCTAAAAAGTAAA---TCT---AAATTA---AAT--------------TAA-ATTAT-ATTGAA---TT-----AATTAAGTTCCCAGCT-GAAC-TCAAAACACAGTCCCGACCTCGGATGAAATATAGttacaaatact
gi|14 : AATCAA-ACATTTGTTTAAAC-GTTTGTAAA-AT------GTAC-AC-ATA-TTTTCAATTTGGCATAAG-T-GATAATAATCATGTTTATGGTAATTGAAAACGGAAATGATTCATTACCGGCTACAATTGCATCCTCAACAGAT----GGT----TTA----CTTACAA-CTTACCGATTCAGAA-TATTTTA--------ACGTTGGTATAAAAAGTAAATATTCT---AAATTA---AAT--------GGCGGACGCATATCG-GTT--A---TTCTTTAAA--CATTTCCCGGCAAAAAC-ATAAAACATAGTCCCGCCCTAGAAAGAAATATACTTGAGTTATCAGATCGCGGCGTTCCTA
gi|15 : gGTAAACTAATTCTTTA--------G----AGCGATTGTTTGAACAGAT--ATGTTGCGTGATATTGTTACATGA--------GAATGTTTTCAAAGGCAG-ACG-ACACACAGAAC------TCGCATTTGG--GAAGACTAGAGAGAA--AAA-AATG----------------AAACAGGAAAGACACAAA-TAGAAC--GCCTCGGTACGAATACAATGAAGTATGAATGC-CTACCTTGTAAC-TTGTCTCAATTCTTTTTGTACAATAAACAAGCCGTT
gi|16 : aaagtgtatgattgtttcttggaaaagtCCATTA-----TCTCAAGAGACAACAAATA--AAAAAGGGTACACCCATA-----T-----GTATCTTAGTAAACAAACTCTT----------G----TGCGAGTATTTGAATAGATCTATGGT------------CACATGAATATT-GAGAATGATTGTAAAGGAAA-ACA-ACATACATAAC------ACGTATGTGG-----------AGAGAAAGAAA-A---AAC------------AAAACAGAAAAGAAACAAA-TATAAAAGGCC---ATACGAACAAAATAAAGTACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACAAGCCGTcct
gi|18 : CCATTA-----CCTCAGGAGATAACAAATG--AAAAAGTGTAAACCTGTA-----T-----GTCTCTGTGTAAACTAGCTCTT----------G----TGCGATTATTTGAATAGATATATGGTGTGTGACATTGTCACATGAATATTTGAGAATGGTGGTAAAGGAAG-ACA-ACATACAGAAC------TCGTATGTG-----------GAGAGAAAGAAA-AATAAA
gi|19 : TTTGAATATAT--ATGGTGCGTGGTATTGTCACATGAACATTTGAGAAAGA---CAA-------ACATGCACACAGAAC------TCGTATGCGGAAGGAAAAT-GAGGCGAATAGATAGTGAA---AAAAGAAGAAAAAACAGGAAAGAAATAAG-TGTAAC--GCC---Aa
gi|2 : AGTCCCACATTAGGTGCCAATTTTAAaa
gi|2 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaTTGGATATTTGACCTGCTGTCCATTA-----TCACATGAGACAACAAATA--AAAAAGAGTAAATCTATA-----T-----GCTTCTGGGTAAACAAACTCTT----------G----TTCGATTATTTGAATAGAGCTATGGTGAGTGGTATTGTCAAATGGATATTTGCGAATGATTGTAAAGGAAG-ACA-ACACACAGAAC------TCGTATGAGG--GGAGACTTGAGAGAAAGAAA-AGTGAACCGAAAGG----AAAAA-------------AA-TATAAC--GCC---ATAC-AAGAGAATGAAGCATGAATGA-TAACCTTGTCACATTA---CA-----TTTTGCAC----AACAC-CCGTTTGAAT-----------------CACAC-----AC-ACACACACACAATGATTTAAAAATGATT------------------------GTGTT-------------ATCCTGT--TGTATCCGTGTAACGGTG----A----TCTGTAAAA---ATTC-----AG--CGTCTGCCGAAATTAACACATTT---TACACCGTTTGTAAA-ATTAAAATGTAC-CC-A-AATCTTTAATTTGGCA--AACT-TATACTAATTATGTTTATGGTAATCTAAAACGGAAATAAATCAAAATCGACCACTATTGCATCCTCAGCACATTATAAAT----ATA----C-----AACTTACCGTATCAGAATTATTTCATCGTCGACATATTGGTCAAAAAAGTAAATCTTCT---AAATTA---AA---------------CAC-TTTCCCGTT--T---TTCCGCAGA--AAGTTCCCTGCTAGAAC-ACAAAGCTTAGTCCCAAGCTCGAAAGAAATATAGTTGCGTTCCTAGGTCGTGGTATTCtgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggatttggatatttgacctgctgtccattatcacatgagacaacaaataaaaaagagtaaatctatatgcttctgggtaaacaaactcttgttcgattatttgaatagagctatggtgagtggtattgtcaaatggatatttgcgaatgattgtaaaggaagacaacacacagaactcgtatgaggggagacttgagagaaagaaaagtgaaccgaaaggaaaaaaatataacgccatacaagagaatgaagcatgaatgataaccttgtcacattacattttgcacaacacccgtttgaatcacacacacacacacacaatgatttaaaaatgattgtgttatcctgttgtatccgtgtaacggtgatctgtaaaaattcagcgtctgccgaaattaacacattttacaccgtttgtaaaattaaaatgtacccaaatctttaatttggcaaacttatactaattatgtttatggtaatctaaaacggaaataaatcaaaatcgaccactattgcatcctcagcacattataaatatacaacttaccgtatcagaattatttcatcgtcgacatattggtcaaaaaagtaaatcttctaaattaaacactttcccgtttttccgcagaaagttccctgctagaacacaaagcttagtcccaagctcgaaagaaatatagttgcgttcctaggtcgtggtattcat
gi|20 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaagtcccacattaggtgccaattttaatgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggat--A---TTCCGCATA--AAGTTCCCGGCAAAAAC-ACAAACCATAGTTCCGGTTACGAAAAAAATATAACTGTGTTCTTAGGTCGTGGCGTTCCTACTGat
gi|21 : ttcatacggataTCCTCAACA--T----GATCTAATTA----CG----A-CTTATAGATGTAGAATTAGTTTATCTTCGCTTTGTTtaaggagggtatccaatacgtccattatgcgtgagcgacc
gi|3 : gaagatgactAAACATATA-----T-----GTCTCTAGGTTAACAAACTCTT----------ACAAATGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGCATATCTGAGAATGATTGCAAAGGATG-ACA-ACACACAAAACTTGTAGTCGTATGTTG--GGAGACTCGAGAGAAAGAAA-AATGAACC-----------------GAAAAGAAACAAACTA-AAC--GCC---ATACGAACCAAATGAAGCATGAAAGC-CTACCTTGTCACATTG---TA-----TCTTGCAC----AACACACCGTTTGAAT---tttc
gi|3 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggATGATTTATAAATGAATGTGTCTCTTTGTTG-TTTCTAAACGTGTTCAT--------TTATCCTGTTGT--ATGCGTGTCACGATG----A----CC----tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|3 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAAATAAAGACTTCCATTGCATCCTCAACACAT----AAT----TTAATCAC-----AACTTACCGAATCAGAGATATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAA--------GGTGGATAC-TTTCCCGTT--A---TTCCGCAAA--AAAATCCCGGCTAGAAC-ACAAAACATAGTCCCGACCTCCGAAGAAATATAGCTGCATTCTTTTGTAGTGATGTTCCTACTGC--A--ATGCAAACCACAAAT---ACtgtcaccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|4 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttATTGCATCCTCAACACAT----GGT----TTAATCAC-----AGCTTACTGAATCAGAGTTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAG--------GGTGGACAC-TTTCCCGTT--A---TTCCGCAAA--AAAATCCCGGCTAGAAC-ATAATACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGATGTTCCTACTGC--A--ATGCAAAC--CAAAT---AC
gi|5 : ATTGCATCCTCAACACAT----AAT----TTAATCAC-----AACTTACCGAATCAGAGATATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAA--------GGTGGATAC-TTTCCCGTT--A---TTCCGCAAA--AAAATCCCGGCTAGAAC-ACAAAACATAGTCCCGACCTCCGAAGAAATATAGCTGCATTCTTTTGTAGTGATGTTCCTACTGC--A--ATGCAAACCACAAAT---ACacaacatcatgacatctgtcctttatatcgatataagacttgatattagacagcagcgtgtatttatttgtggaaaatggataagacgtggtagataaagaaacatcacgtatataaatgcataagataaaaattgaaaattgatgatcatcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcacacgaaaaaggttttttgaatatatagtaaaaccttcctttaccaatgctaaaatgtgacaaactatttgtaatgggaaccaattgataacaaaataaacagatcatcctatgggaggatgcgtattcttgacttttctaaatatttgttgatggttttcattattattacgtttaaaaacaaatatgtttcttctctctgttcagagaatcaaactaaatattcataaaaacatattattattatatgcatccgattataatcaagtcagtatgcttttttattgataagtataagatgataatgagatgaaatatta
gi|6 : GGTAAACCTATA-----TAATATGTCTCTGGGTAGACAAACTCTTTAGAGTTCTTG----TGCGATTATTTGAATACATCTATGTTGCGTGGCGTTGCCACATGACTAGTTGAGAATGATTGCAAAGGACG-ACA-ACAC------C------T------------GA-ACTCGAGAGTAAGAAA-GGTGAAACGAAATG----AACAACAGAAAAGAAACAAA-TATAAC--GCC---ATCCGAACATAATAAAGCACGAAGTC-CTACTTTGTCACATTT---GA-----TTTTGCAC----TACACGCCGTTTAAAT---------------------T-----AC-ATGCACACACAATGATTT-AAAATTATTATGTAA------------CTAAATGTGTTCATTTATCCTGTTATCCTGT--T--ATCCATGTCACGATGACATA----TC----AAA---ATTC-----GG--CGCCTGCCGAAATGAACACATTT---TACATCGTTCGTAAA-AT------GTACACA-A-A-TCTCTTATTTGGCATAAA-T-TTTAA-AATTATGTTTATGGCAATTTAAAACGGAAATAATTCAATACCGACTAACATTGCATCCTCAACACAC----GAT----TTA----CTTAAAA-CTTACCACATCAGAacaacatcatggcatatgtcctttatatcgatatgagacttgatatcagacagcggcgtgtatttatttgtggaaaatggaaaggacatggtagataaagaaacatcacgtatataaatacatatgatgaaaatagaaaattgatgatcgtcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcaaacgataaagtattttttaatatatagtaaacttttctttaccaatgcttatatgtgacaaactatttgttatgagaaccaattgataacaaaataaacagaccatcctatggaaggatgcgtattcttgacttttctaaacagttgttgatggttttcattattattacgcttagaaacaaatatgctgcttctctctgttcagagaatcaaactatatattcatcaacaaatattactataggcatccgattataatataatccagtcagtatgcttttttattgataagtataagatgataatgagatgaaata
gi|7 : ttaaactactgacatacatttatctacttacatgtttggtacacaatgtgacatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACAGAATAAAGCCTGAAGGCGCTACCTTG-CAGTCTGTCCCA-----TTTTAT---------------TTTGAAC---AACTGAAGAATAGTTCGTGTTTGGATTACACACACACAA--------AACTGATTATGCAAATTTCC--------AACTGTGTTTAT--------GTATCCTGT--T--ATCCGTGTGACAGTG----ACCTGTC----AGATTCATTTGTTTTAGTTCGTCTGCCGAAATGGACACATAC---AACACAGCTCGTTAATAT------GTAC-AG-ATA-TTATTTATTTCGCA-GTA-TATATACTATTTATATTTATGGTATTTCTGACCGGGAATAATTCGAAAATGACTATAATTACATCCTCAATACAT----GAT----TTG----CTTACAA-CTGACCGATTCAGAATTATTTTATCATCGCTTTTTTTGTC-----ATT--TTTTTCTGCAAAAT------AT--------GGCGGACGC-ATACG-GTT--ATGTTTCTG--AA--AAGCTCCCGGCAAAA
gi|8 : tTTGGATATTCGACCTGCTGTCAATTAATTTATCTTAGGAGACAACAAATACAAAAAAGGGCAA-CATATA-----T-----GTCTCTGGGTTAACAAACTCTTACAA------G----TGTGATTATTTGAATAGATCAATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-CCACACAGAACTCGTAGTCGTATGTGG--GGAGACTCGAG---AAAAAA-AATGAACC-----------------AAAAAGAAACAAA-TAAAAC--GCC---ATACGAACAAAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TCCT---C----AACACt
gi|8 : ttcagggacttgaacctatgatcgtttgttaacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaacttacatgtatcgtaaacagggacattttgatCATTGCATCCTCAACACAT----GGT----atggt
gi|9 : ttcagggacttgaacctatgatcgtttgttaacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaacttacatgtatcgtaaacagggacattttgatttggatattcgacctgctgtcaattaatttatcttaggagacaacaaatacaaaaaagggcaacatatatgtctctgggttaacaaactcttacaagtgtgattatttgaatagatcaatggtgcgtggtattgtcacatgaatatttgagaatgattgcaaaggaagacaccacacagaactcgtagtcgtatgtggggagactcgagaaaaaaaatgaaccaaaaagaaacaaataaaacgccatacgaacaaaatgaagcacgaaggcctaccttgtca-----AC-ACACACACACAATG---------------TGTCACTTTCTTT-TTTCTTAATGTGTTCAT------------------------CCGTGTCACGGTG----A----CC---------------------------TGTCAA--------CATTT---AACACCGTTCGTAAA-AT------GTAC-CC-A-AATCTTTAATATGGCATGAA-T-TATACCAATTGTGTTGATGGTAATTCAAAACGGAAATAATTCAATACCGACTACCATGGCATCTTCAACACAT----GATTAGCTTA----CA----A-CTTACCGAATCAGAATTATTTCACCGTCGCCATACTGGTCAAAAAAGTAACTCTTCT---AAATTA---AAT--------GGCGGACAC-TTTCCAGTT--A---TTCCGCATA--AAGTTCCCGGCAAGAAC-ACAAAACATAGTCCCAGTCTCGGAAGAAATATTACTGTGTTCTTAGGTGGTGAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTAGCAAATTGATTGATAACTCAGTGTGTTGTAAAAACTAGAGTTTAACATATTCGCTAGAGGTTAAATGTTATCTCACACACGAAAAAGAAGTATTTTTGAATATAAGACAAGGCCTTTCTTTAACGTGCAAAGGGTTAGTGACACAAATGTAATGAAAGCCAACTGAGTACAAAATAAACTGACCATCCTATGTAGGGATGTGTATTCTAGATTTTTAAACATTTAATTATGATTTTCCTTATTACTACATTAAGAAACAATATGGTTCAAATGTTAAGTTCATTCTATATGCTAGGAGACTCAAACTGACACTTTTATTCTTATAGTCTCCATTTATAATGCAGACAGTATGATTATTTTAATGATAATTATAAGAGATACATGGGATGAAATATGAG
Unaligned ( gi|17 ): TATTATAGACTTGTCTAAACAATTGATTATGGTTTTCATTTTTACTATTTAAAGAAACAATTTGGTTCAATTTTAAGTTACTTCTCTCTGTTAAAAGATTCAAACTGACTATCCATAAAATAAATATTCTTATAAGCATACAATCATAATCCAGACAGCATGCCTAAGATAAGAATGATTATAAGGTGATAAATGAGGTGAAAT
Unaligned ( gi|22 ): AACTACTGACATACATTTCTCTCCTACATGTTATCCACAATGTGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111 11111111111 555555555555555 222222 44444444444444 111 11111 111111111111111111111111111 33333333 222222222 11111 3333333333333333333333333333333333 111 111111 111 66666666666666666666666 111111111 222 111 11 111 1 1 1 1 222222
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 66666 99 7 0 66666666666 555555555555555 5 4 4 333333 55 1 4 4 1 44444444444444 22 4 4 66 777 2 4 555 11111 33 9999 22 666666666666666666666666666 6 1 1 666 5 5 22222222 0 0 444444444 77777 7777777777777777777777777777777777 3 0 000 0 5 666666 5555 222 6 5 5 6666 11111111111111111111111 2 777 777 888888888 1 4 55 3 666 1 4 000 444 0 33 444 5 5 5 5 1 888888
lowQualScore : .................................................................................................................................. . ..... .. . . ........... ............... . . . ...... .. . . . . .............. .. . . .. ... . . ... ..... .. .... .. ........................... . . . ... . . ........ . . ......... ..... .................................. . . ... . . ...... .... ... . . . .... ....................... . ... ... ......... . . .. . ... . . ... ... . .. ... . . . . . ......
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 77777 22 1 1 00000000000 777777777777777 0 0 0 000000 55 6 1 0 4 77777777777777 88 4 7 11 888 7 4 666 11111 77 4444 55 999999999999999999999999999 7 7 4 000 4 6 22222222 5 1 222222222 66666 6666666666666666666666666666666666 0 7 000 7 7 444444 7777 444 5 0 0 5555 77777777777777777777777 6 000 000 000000000 1 1 55 6 444 0 0 000 000 8 22 000 5 0 5 0 0 000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTCGACCTGCTGTCCATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----T-----GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACCG-AAA-G----AAAAACAGAAAAGAAACAAA-TATAAC--GCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACACGCCGTTTGAAT---AACTGAAGAATAGTCNNNN-----AC-ACGCACACACAATGATTTAAAAATGATTGTGTCACTTTCTTG-TT-CTAAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCACGGTG----A----TC----AAA---ATTC-----AG--CGTCTGCCGAAATNAACACATTT---TACACCGTTCGTAAA-AT------GTAC-CC-A-A-TCTTTAATTTGGCATGAA-T-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACAT----GAT----T----TA----C-----A-CTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACACTTTCCCG--TT-A---TTCCGCAAAAAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGCTAAT---GCAAACCACAAAT---ACCGTAACTAGTGTATTCTATTACGTGNTTGTTCAGCGGTGTCTGTAGCGACCGATACTATGT
Reference ( family-774 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTCGACCTGCTGTCCATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----T-----GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACCG-AAA-G----AAAAACAGAAAAGAAACAAA-TATAAC--GCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACACGCCGTTTGAAT---AACTGAAGAATAGTCNNNN-----AC-ACGCACACACAATGATTTAAAAATGATTGTGTCACTTTCTTG-TT-CTAAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCACGGTG----A----TC----AAA---ATTC-----AG--CGTCTGCCGAAATNAACACATTT---TACACCGTTCGTAAA-AT------GTAC-CC-A-A-TCTTTAATTTGGCATGAA-T-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACAT----GAT----T----TA----C-----A-CTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACACTTTCCCG--TT-A---TTCCGCAAAAAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGCTAAT---GCAAACCACAAAT---ACCGTAACTAGTGTATTCTATTACGTGNTTGTTCAGCGGTGTCTGTAGCGACCGATACTATGT
gi|1 : AGTCCCATATTAGGTACCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTTGACCTTCTGTCAATTA-----TCTCAGGAGACAACAAATA--AGAAAGGG-AAACCTATACAGTGT-----GTCTCTGGGTAAACAAACTATT----------G----TGCGATTATTTGAATAGATATATGGTGCGTGGTATTGTCACATAAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TTTTATGTGG--GGAGAACCGAGAGAAAGAAA-AGTGAACCGAAAA-G----AAAAACCGAAAACAAAGAAA-TATAAC--GCC---ATACGAACAAAATGAAGCACGAAGGC-CTAACTTGTCACACTG---CA-----TTTTG--C----AACAGGCCGTTTGAAT---NNNNNNNNNNNNNNNNNNN-----NN-NNNNNNNNNNNNTGATTCAAAAATGATTGTGTCACTTTCTTA-TT-CGAAATGTGTTCAT--------TTGTCCTGT--TTGATCCATGTCACGGTG---------------AAA---ATTC-----AG--CGTCTGCCGAAATGAACACATTT---TTCACCGTTTGTAAA-AT------GTAC-CC-A-A-TCTTTAATCTGGCCAGAA-T-TATACTAATTATGTTTATGGTAATTTAATACGGAAACAATTCGATACCAACGACCATTGCATCCCTAACGCAT----GAT----T----T-----------A-CTTACTGAATCAGATCTATTTCATCGTCGCCATGTTGAT-AAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACACT--------TT-A---TTCTGCAAAAAGTTCCCGACAAGAATAAAAAAACATAGT--CGACCTCGGAAGAAATATAACTTGGTTCTTAGGTCGTGGCGTTCCAAATGCTTACCAGACAAA--ACAAATTTGACCATAAC-AGTGTATTCTATTACGTGTTTATTCAGCAATGTCTATA------GATATTATAT
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttgtaagtcaaactcacA-----TCTCAGGAGACAACAAA-------ACCGG----CCTATA-----T-----ATCTCTGGGTAAATACACTCTTTAAAGTCCGTG----TGCAGTTATTTGAACAGATCTATAGTGCGTGTTATTGTCACATGGATATTTGAGAATGATTGCAAAGGGAGGACA-ACACACATAAT------TCGTATGTGG--GGAGACTCGAGAGAATGAAA-TGTGAATCG-AAAAG----AAAAACAGAAAAGAAACAAA-AAGAAC--GCC---TTACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTT---AA-----TTTTGCAC----AACACGCAGTTTGAATNNNNNNNNNNNNNNNNNNNNNN-----NN-NNNNNNNNNNNNNNNNNNNNNNNTGATTATGTCGCTTTAATGTTT-CTTAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCATGGTG----A----Tgaatgcta
gi|12 : -TCTTAAACTTGGCATGAA-T-TATACTAAATATGTTTATGGTAATCTAAAACGGAAATAAATAAATACCGACTACCATTGCATCCTTAACACGT----GATGTACT----TA----CA----A-CTTACCGAATCAGAATTATTTCATCGTTGCCATGCTGGTCGAAAAAGTAAATCTTCT---AAATTAGGCAGTGACATTTAGGCTGACACTTTCCAG--TT-T---TTTCGCAACAAGTTCCTAGCTAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATAAAGCTGCGTTCTAAAGTCGTGTTGTTCCTACTGTT-AT---GTA---TACAAAT---ACTGTAACTAGT-TATTTTA-TA-GTAGTTGTTTAATGGTATCTGTAGCGACCGATACTATGT
gi|13 : CACTGATTTAAAAATGATTGTGTCAATTTCTTGTTT-CTAAATATGTGC------------------------ATCCGTGTCACGGTG----ACCTGTC----AAA---GTTC-----AG--CGTCTGCCGAAATCAACATATTT---TACACCGTTCGTAAA-TT------GTAC-CCAA-A-TCTTTAATTTAGCATGAA-T-TATAATAATTATGTTTATGGCATTTTCAAACGGAAATAATTCAACACCGACTACCATTCCATCCTCAACACAT----GAT----T----TA----CTTTCAA-CTTACCGAATCAGAATTATTTCATTGTCGCCATGCTGGTCTAAAAAGTAAA---TCT---AAATTA---AAT------------TAAATTATATTGAATTAA---TT-------AAGTTCCCAGCT-GAAC-TCAAAACACAGTCCCGACCTCGGATGAAATATAGttacaaatact
gi|14 : AATCAA-ACATTTGTTTAAAC-GTTTGTAAA-AT------GTAC-AC-ATA-TTTTCAATTTGGCATAAG-T-GATAATAATCATGTTTATGGTAATTGAAAACGGAAATGATTCATTACCGGCTACAATTGCATCCTCAACAGAT----GGT----T----TA----CTTACAA-CTTACCGATTCAGAAT-ATTTTA--------ACGTTGGTATAAAAAGTAAATATTCT---AAATTA---AAT--------GGCGGACGCATATCGG--TT-A---TTCTTTAAACATTTCCCGGCAAAAAC-ATAAAACATAGTCCCGCCCTAGAAAGAAATATACTTGAGTTATCAGATCGCGGCGTTCCTA
gi|15 : gGTAAACTAATTCTTTA--------G----AGCGATTGTTTGAACAGAT--ATGTTGCGTGATATTGTTACATGA--------GAATGTTTTCAAAGGCAG-ACG-ACACACAGAAC------TCGCATTTGG--GAAGACTAGAGAGAA--AAA-AATG-----------------AAACAGGAAAGACACAAA-TAGAAC--GCCTCGGTACGAATACAATGAAGTATGAATGC-CTACCTTGTAAC-TTGTCTCAATTCTTTTTGTACAATAAACAAGCCGTT
gi|16 : aaagtgtatgattgtttcttggaaaagtCCATTA-----TCTCAAGAGACAACAAATA--AAAAAGGGTACACCCATA-----T-----GTATCTTAGTAAACAAACTCTT----------G----TGCGAGTATTTGAATAGATCTATGGT------------CACATGAATATT-GAGAATGATTGTAAAGGAAA-ACA-ACATACATAAC------ACGTATGTGG-----------AGAGAAAGAAA-A---AAC-------------AAAACAGAAAAGAAACAAA-TATAAAAGGCC---ATACGAACAAAATAAAGTACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACAAGCCGTcct
gi|18 : CCATTA-----CCTCAGGAGATAACAAATG--AAAAAGTGTAAACCTGTA-----T-----GTCTCTGTGTAAACTAGCTCTT----------G----TGCGATTATTTGAATAGATATATGGTGTGTGACATTGTCACATGAATATTTGAGAATGGTGGTAAAGGAAG-ACA-ACATACAGAAC------TCGTATGTG-----------GAGAGAAAGAAA-AATAAA
gi|19 : TTTGAATATAT--ATGGTGCGTGGTATTGTCACATGAACATTTGAGAAAGA---CAA-------ACATGCACACAGAAC------TCGTATGCGGAAGGAAAAT-GAGGCGAATAGATAGTGAA--A-AAA-GAAGAAAAAACAGGAAAGAAATAAG-TGTAAC--GCC---Aa
gi|2 : AGTCCCACATTAGGTGCCAATTTTAAaa
gi|2 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaTTGGATATTTGACCTGCTGTCCATTA-----TCACATGAGACAACAAATA--AAAAAGAGTAAATCTATA-----T-----GCTTCTGGGTAAACAAACTCTT----------G----TTCGATTATTTGAATAGAGCTATGGTGAGTGGTATTGTCAAATGGATATTTGCGAATGATTGTAAAGGAAG-ACA-ACACACAGAAC------TCGTATGAGG--GGAGACTTGAGAGAAAGAAA-AGTGAACCG-AAA-G----GAAAA------------AAA-TATAAC--GCC---ATAC-AAGAGAATGAAGCATGAATGA-TAACCTTGTCACATTA---CA-----TTTTGCAC----AACAC-CCGTTTGAAT-----------------CACAC-----AC-ACACACACACAATGATTTAAAAATGATT------------------------GTGTT-------------ATCCTGT--TGTATCCGTGTAACGGTG----A----TCTGTAAAA---ATTC-----AG--CGTCTGCCGAAATTAACACATTT---TACACCGTTTGTAAA-ATTAAAATGTAC-CC-A-AATCTTTAATTTGGCA--AACT-TATACTAATTATGTTTATGGTAATCTAAAACGGAAATAAATCAAAATCGACCACTATTGCATCCTCAGCACATTATAAAT----A----TA----C-----AACTTACCGTATCAGAATTATTTCATCGTCGACATATTGGTCAAAAAAGTAAATCTTCT---AAATTA---AA---------------CACTTTCCCG--TT-T---TTCCGCAGAAAGTTCCCTGCTAGAAC-ACAAAGCTTAGTCCCAAGCTCGAAAGAAATATAGTTGCGTTCCTAGGTCGTGGTATTCtgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggatttggatatttgacctgctgtccattatcacatgagacaacaaataaaaaagagtaaatctatatgcttctgggtaaacaaactcttgttcgattatttgaatagagctatggtgagtggtattgtcaaatggatatttgcgaatgattgtaaaggaagacaacacacagaactcgtatgaggggagacttgagagaaagaaaagtgaaccgaaaggaaaaaaatataacgccatacaagagaatgaagcatgaatgataaccttgtcacattacattttgcacaacacccgtttgaatcacacacacacacacacaatgatttaaaaatgattgtgttatcctgttgtatccgtgtaacggtgatctgtaaaaattcagcgtctgccgaaattaacacattttacaccgtttgtaaaattaaaatgtacccaaatctttaatttggcaaacttatactaattatgtttatggtaatctaaaacggaaataaatcaaaatcgaccactattgcatcctcagcacattataaatatacaacttaccgtatcagaattatttcatcgtcgacatattggtcaaaaaagtaaatcttctaaattaaacactttcccgtttttccgcagaaagttccctgctagaacacaaagcttagtcccaagctcgaaagaaatatagttgcgttcctaggtcgtggtattcat
gi|20 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaagtcccacattaggtgccaattttaatgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggat-A---TTCCGCATAAAGTTCCCGGCAAAAAC-ACAAACCATAGTTCCGGTTACGAAAAAAATATAACTGTGTTCTTAGGTCGTGGCGTTCCTACTG-TAAat
gi|21 : ttcatacggataTCCTCAACA--T----GATCTAAT----TA----CG----A-CTTATAGATGTAGAATTAGTTTATCTTCGCTTTGTTggagggtatccaatacgtccattatgcgtgagcgacc
gi|3 : gaagatgactAAACATATA-----T-----GTCTCTAGGTTAACAAACTCTT----------ACAAATGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGCATATCTGAGAATGATTGCAAAGGATG-ACA-ACACACAAAACTTGTAGTCGTATGTTG--GGAGACTCGAGAGAAAGAAA-AATGAACC------------------GAAAAGAAACAAACTA-AAC--GCC---ATACGAACCAAATGAAGCATGAAAGC-CTACCTTGTCACATTG---TA-----TCTTGCAC----AACACACCGTTTGAAT---tttc
gi|3 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggATGATTTATAAATGAATGTGTCTCTTTGTTG-TTTCTAAACGTGTTCAT--------TTATCCTGTTGT--ATGCGTGTCACGATG----A----CC----tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|3 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAAATAAAGACTTCCATTGCATCCTCAACACAT----AAT----T----TAATCAC-----AACTTACCGAATCAGAGATATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAA--------GGTGGATACTTTCCCG--TT-A---TTCCGCAAAAAAATCCCGGCTAGAAC-ACAAAACATAGTCCCGACCTCCGAAGAAATATAGCTGCATTCTTTTGTAGTGATGTTCCTACTGC-AAT---GCAAACCACAAAT---ACtgtcaccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|4 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttATTGCATCCTCAACACAT----GGT----T----TAATCAC-----AGCTTACTGAATCAGAGTTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAG--------GGTGGACACTTTCCCG--TT-A---TTCCGCAAAAAAATCCCGGCTAGAAC-ATAATACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGATGTTCCTACTGC-AAT---GCAAAC--CAAAT---AC
gi|5 : ATTGCATCCTCAACACAT----AAT----T----TAATCAC-----AACTTACCGAATCAGAGATATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAA--------GGTGGATACTTTCCCG--TT-A---TTCCGCAAAAAAATCCCGGCTAGAAC-ACAAAACATAGTCCCGACCTCCGAAGAAATATAGCTGCATTCTTTTGTAGTGATGTTCCTACTGC-AAT---GCAAACCACAAAT---ACacaacatcatgacatctgtcctttatatcgatataagacttgatattagacagcagcgtgtatttatttgtggaaaatggataagacgtggtagataaagaaacatcacgtatataaatgcataagataaaaattgaaaattgatgatcatcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcacacgaaaaaggttttttgaatatatagtaaaaccttcctttaccaatgctaaaatgtgacaaactatttgtaatgggaaccaattgataacaaaataaacagatcatcctatgggaggatgcgtattcttgacttttctaaatatttgttgatggttttcattattattacgtttaaaaacaaatatgtttcttctctctgttcagagaatcaaactaaatattcataaaaacatattattattatatgcatccgattataatcaagtcagtatgcttttttattgataagtataagatgataatgagatgaaatatta
gi|6 : GGTAAACCTATA-----TAATATGTCTCTGGGTAGACAAACTCTTTAGAGTTCTTG----TGCGATTATTTGAATACATCTATGTTGCGTGGCGTTGCCACATGACTAGTTGAGAATGATTGCAAAGGACG-ACA-ACAC------C------T------------GA-ACTCGAGAGTAAGAAA-GGTGAAACG-AAATG----AACAACAGAAAAGAAACAAA-TATAAC--GCC---ATCCGAACATAATAAAGCACGAAGTC-CTACTTTGTCACATTT---GA-----TTTTGCAC----TACACGCCGTTTAAAT---------------------T-----AC-ATGCACACACAATGATTT-AAAATTATTATGTAA------------CTAAATGTGTTCATTTATCCTGTTATCCTGT--T--ATCCATGTCACGATGACATA----TC----AAA---ATTC-----GG--CGCCTGCCGAAATGAACACATTT---TACATCGTTCGTAAA-AT------GTACACA-A-A-TCTCTTATTTGGCATAAA-T-TTTAA-AATTATGTTTATGGCAATTTAAAACGGAAATAATTCAATACCGACTAACATTGCATCCTCAACACAC----GAT----T----TA----CTTAAAA-CTTACCACATCAGAacaacatcatggcatatgtcctttatatcgatatgagacttgatatcagacagcggcgtgtatttatttgtggaaaatggaaaggacatggtagataaagaaacatcacgtatataaatacatatgatgaaaatagaaaattgatgatcgtcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcaaacgataaagtattttttaatatatagtaaacttttctttaccaatgcttatatgtgacaaactatttgttatgagaaccaattgataacaaaataaacagaccatcctatggaaggatgcgtattcttgacttttctaaacagttgttgatggttttcattattattacgcttagaaacaaatatgctgcttctctctgttcagagaatcaaactatatattcatcaacaaatattactataggcatccgattataatataatccagtcagtatgcttttttattgataagtataagatgataatgagatgaaata
gi|7 : ttaaactactgacatacatttatctacttacatgtttggtacacaatgtgacatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACAGAATAAAGCCTGAAGGCGCTACCTTG-CAGTCTGTCCCA-----TTTTAT---------------TTTGAAC---AACTGAAGAATAGTTCGTGTTTGGATTACACACACACAA--------AACTGATTATGCAAATTTCC--------AACTGTGTTTAT--------GTATCCTGT--T--ATCCGTGTGACAGTG----ACCTGTC----AGATTCATTTGTTTTAGTTCGTCTGCCGAAATGGACACATAC---AACACAGCTCGTTAATAT------GTAC-AG-ATA-TTATTTATTTCGCA-GTA-TATATACTATTTATATTTATGGTATTTCTGACCGGGAATAATTCGAAAATGACTATAATTACATCCTCAATACAT----GAT----T----TG----CTTACAA-CTGACCGATTCAGAATTATTTTATCATCGCTTTTTTTGTC-----ATT--TTTTTCTGCAAAAT------AT--------GGCGGACGC-ATACGG--TT-ATGTTTCTG--AAAAGCTCCCGGCAAAA
gi|8 : tTTGGATATTCGACCTGCTGTCAATTAATTTATCTTAGGAGACAACAAATACAAAAAAGGGCAA-CATATA-----T-----GTCTCTGGGTTAACAAACTCTTACAA------G----TGTGATTATTTGAATAGATCAATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-CCACACAGAACTCGTAGTCGTATGTGG--GGAGACTCGAG---AAAAAA-AATGAACC------------------AAAAAGAAACAAA-TAAAAC--GCC---ATACGAACAAAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TCCT---C----AACACt
gi|8 : ttcagggacttgaacctatgatcgtttgttaacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaacttacatgtatcgtaaacagggacattttgatCATTGCATCCTCAACACAT----GGT----atggt
gi|9 : ttcagggacttgaacctatgatcgtttgttaacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaacttacatgtatcgtaaacagggacattttgatttggatattcgacctgctgtcaattaatttatcttaggagacaacaaatacaaaaaagggcaacatatatgtctctgggttaacaaactcttacaagtgtgattatttgaatagatcaatggtgcgtggtattgtcacatgaatatttgagaatgattgcaaaggaagacaccacacagaactcgtagtcgtatgtggggagactcgagaaaaaaaatgaaccaaaaagaaacaaataaaacgccatacgaacaaaatgaagcacgaaggcctaccttgtca-----AC-ACACACACACAATG---------------TGTCACTTTCTTT-TTTCTTAATGTGTTCAT------------------------CCGTGTCACGGTG----A----CC---------------------------TGTCAA--------CATTT---AACACCGTTCGTAAA-AT------GTAC-CC-A-AATCTTTAATATGGCATGAA-T-TATACCAATTGTGTTGATGGTAATTCAAAACGGAAATAATTCAATACCGACTACCATGGCATCTTCAACACAT----GAT----TAGCTTA----C-----AACTTACCGAATCAGAATTATTTCACCGTCGCCATACTGGTCAAAAAAGTAACTCTTCT---AAATTA---AAT--------GGCGGACACTTTCCAG--TT-A---TTCCGCATAAAGTTCCCGGCAAGAAC-ACAAAACATAGTCCCAGTCTCGGAAGAAATATTACTGTGTTCTTAGGTGGTGAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTAGCAAATTGATTGATAACTCAGTGTGTTGTAAAAACTAGAGTTTAACATATTCGCTAGAGGTTAAATGTTATCTCACACACGAAAAAGAAGTATTTTTGAATATAAGACAAGGCCTTTCTTTAACGTGCAAAGGGTTAGTGACACAAATGTAATGAAAGCCAACTGAGTACAAAATAAACTGACCATCCTATGTAGGGATGTGTATTCTAGATTTTTAAACATTTAATTATGATTTTCCTTATTACTACATTAAGAAACAATATGGTTCAAATGTTAAGTTCATTCTATATGCTAGGAGACTCAAACTGACACTTTTATTCTTATAGTCTCCATTTATAATGCAGACAGTATGATTATTTTAATGATAATTATAAGAGATACATGGGATGAAATATGAG
Unaligned ( gi|17 ): TATTATAGACTTGTCTAAACAATTGATTATGGTTTTCATTTTTACTATTTAAAGAAACAATTTGGTTCAATTTTAAGTTACTTCTCTCTGTTAAAAGATTCAAACTGACTATCCATAAAATAAATATTCTTATAAGCATACAATCATAATCCAGACAGCATGCCTAAGATAAGAATGATTATAAGGTGATAAATGAGGTGAAAT
Unaligned ( gi|22 ): AACTACTGACATACATTTCTCTCCTACATGTTATCCACAATGTGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111
lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111 11111111111 555555555555555 222222 44444444444444 111 11111 111111111111111111111111111 33333333 222222222 11111 3333333333333333333333333333333333 111 111111 111 66666666666666666666666 111111111 222 111 11 111 1 1 1 1 222222
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 66666 99 7 0 66666666666 555555555555555 5 4 4 333333 55 1 4 4 1 44444444444444 22 4 4 66 777 2 4 555 11111 33 9999 22 666666666666666666666666666 6 1 1 666 5 5 22222222 0 0 444444444 77777 7777777777777777777777777777777777 3 0 000 0 5 666666 5555 222 6 5 5 6666 11111111111111111111111 2 777 777 888888888 1 4 55 3 666 1 4 000 444 0 33 444 5 5 5 5 1 888888
lowQualScore : .................................................................................................................................. . ..... .. . . ........... ............... . . . ...... .. . . . . .............. .. . . .. ... . . ... ..... .. .... .. ........................... . . . ... . . ........ . . ......... ..... .................................. . . ... . . ...... .... ... . . . .... ....................... . ... ... ......... . . .. . ... . . ... ... . .. ... . . . . . ......
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 77777 22 1 1 00000000000 777777777777777 0 0 0 000000 55 6 1 0 4 77777777777777 88 4 7 11 888 7 4 666 11111 77 4444 55 999999999999999999999999999 7 7 4 000 4 6 22222222 5 1 222222222 66666 6666666666666666666666666666666666 0 7 000 7 7 444444 7777 444 5 0 0 5555 77777777777777777777777 6 000 000 000000000 1 1 55 6 444 0 0 000 000 8 22 000 5 0 5 0 0 000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTCGACCTGCTGTCCATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----T-----GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACCG-AAA-G----AAAAACAGAAAAGAAACAAA-TATAAC--GCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACACGCCGTTTGAAT---AACTGAAGAATAGTCNNNN-----AC-ACGCACACACAATGATTTAAAAATGATTGTGTCACTTTCTTG-TT-CTAAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCACGGTG----A----TC----AAA---ATTC-----AG--CGTCTGCCGAAATNAACACATTT---TACACCGTTCGTAAA-AT------GTAC-CC-A-A-TCTTTAATTTGGCATGAA-T-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACAT----GAT----T----TA----C-----A-CTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACACTTTCCCG--TT-A---TTCCGCAAAAAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGCTAAT---GCAAACCACAAAT---ACCGTAACTAGTGTATTCTATTACGTGNTTGTTCAGCGGTGTCTGTAGCGACCGATACTATGT
Reference ( family-774 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTCGACCTGCTGTCCATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----T-----GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACCG-AAA-G----AAAAACAGAAAAGAAACAAA-TATAAC--GCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACACGCCGTTTGAAT---AACTGAAGAATAGTCNNNN-----AC-ACGCACACACAATGATTTAAAAATGATTGTGTCACTTTCTTG-TT-CTAAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCACGGTG----A----TC----AAA---ATTC-----AG--CGTCTGCCGAAATNAACACATTT---TACACCGTTCGTAAA-AT------GTAC-CC-A-A-TCTTTAATTTGGCATGAA-T-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACAT----GAT----T----TA----C-----A-CTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACACTTTCCCG--TT-A---TTCCGCAAAAAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGCTAAT---GCAAACCACAAAT---ACCGTAACTAGTGTATTCTATTACGTGNTTGTTCAGCGGTGTCTGTAGCGACCGATACTATGT
gi|1 : AGTCCCATATTAGGTACCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTTGACCTTCTGTCAATTA-----TCTCAGGAGACAACAAATA--AGAAAGGG-AAACCTATACAGTGT-----GTCTCTGGGTAAACAAACTATT----------G----TGCGATTATTTGAATAGATATATGGTGCGTGGTATTGTCACATAAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TTTTATGTGG--GGAGAACCGAGAGAAAGAAA-AGTGAACCGAAAA-G----AAAAACCGAAAACAAAGAAA-TATAAC--GCC---ATACGAACAAAATGAAGCACGAAGGC-CTAACTTGTCACACTG---CA-----TTTTG--C----AACAGGCCGTTTGAAT---NNNNNNNNNNNNNNNNNNN-----NN-NNNNNNNNNNNNTGATTCAAAAATGATTGTGTCACTTTCTTA-TT-CGAAATGTGTTCAT--------TTGTCCTGT--TTGATCCATGTCACGGTG---------------AAA---ATTC-----AG--CGTCTGCCGAAATGAACACATTT---TTCACCGTTTGTAAA-AT------GTAC-CC-A-A-TCTTTAATCTGGCCAGAA-T-TATACTAATTATGTTTATGGTAATTTAATACGGAAACAATTCGATACCAACGACCATTGCATCCCTAACGCAT----GAT----T----T-----------A-CTTACTGAATCAGATCTATTTCATCGTCGCCATGTTGAT-AAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACACT--------TT-A---TTCTGCAAAAAGTTCCCGACAAGAATAAAAAAACATAGT--CGACCTCGGAAGAAATATAACTTGGTTCTTAGGTCGTGGCGTTCCAAATGCTTACCAGACAAA--ACAAATTTGACCATAAC-AGTGTATTCTATTACGTGTTTATTCAGCAATGTCTATA------GATATTATAT
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttgtaagtcaaactcacA-----TCTCAGGAGACAACAAA-------ACCGG----CCTATA-----T-----ATCTCTGGGTAAATACACTCTTTAAAGTCCGTG----TGCAGTTATTTGAACAGATCTATAGTGCGTGTTATTGTCACATGGATATTTGAGAATGATTGCAAAGGGAGGACA-ACACACATAAT------TCGTATGTGG--GGAGACTCGAGAGAATGAAA-TGTGAATCG-AAAAG----AAAAACAGAAAAGAAACAAA-AAGAAC--GCC---TTACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTT---AA-----TTTTGCAC----AACACGCAGTTTGAATNNNNNNNNNNNNNNNNNNNNNN-----NN-NNNNNNNNNNNNNNNNNNNNNNNTGATTATGTCGCTTTAATGTTT-CTTAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCATGGTG----A----Tgaatgcta
gi|12 : -TCTTAAACTTGGCATGAA-T-TATACTAAATATGTTTATGGTAATCTAAAACGGAAATAAATAAATACCGACTACCATTGCATCCTTAACACGT----GATGTACT----TA----CA----A-CTTACCGAATCAGAATTATTTCATCGTTGCCATGCTGGTCGAAAAAGTAAATCTTCT---AAATTAGGCAGTGACATTTAGGCTGACACTTTCCAG--TT-T---TTTCGCAACAAGTTCCTAGCTAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATAAAGCTGCGTTCTAAAGTCGTGTTGTTCCTACTGTT-AT---GTA---TACAAAT---ACTGTAACTAGT-TATTTTA-TA-GTAGTTGTTTAATGGTATCTGTAGCGACCGATACTATGT
gi|13 : CACTGATTTAAAAATGATTGTGTCAATTTCTTGTTT-CTAAATATGTGC------------------------ATCCGTGTCACGGTG----ACCTGTC----AAA---GTTC-----AG--CGTCTGCCGAAATCAACATATTT---TACACCGTTCGTAAA-TT------GTAC-CCAA-A-TCTTTAATTTAGCATGAA-T-TATAATAATTATGTTTATGGCATTTTCAAACGGAAATAATTCAACACCGACTACCATTCCATCCTCAACACAT----GAT----T----TA----CTTTCAA-CTTACCGAATCAGAATTATTTCATTGTCGCCATGCTGGTCTAAAAAGTAAA---TCT---AAATTA---AAT------------TAAATTATATTGAATTAA---TT-------AAGTTCCCAGCT-GAAC-TCAAAACACAGTCCCGACCTCGGATGAAATATAGttacaaatact
gi|14 : AATCAA-ACATTTGTTTAAAC-GTTTGTAAA-AT------GTAC-AC-ATA-TTTTCAATTTGGCATAAG-T-GATAATAATCATGTTTATGGTAATTGAAAACGGAAATGATTCATTACCGGCTACAATTGCATCCTCAACAGAT----GGT----T----TA----CTTACAA-CTTACCGATTCAGAAT-ATTTTA--------ACGTTGGTATAAAAAGTAAATATTCT---AAATTA---AAT--------GGCGGACGCATATCGG--TT-A---TTCTTTAAACATTTCCCGGCAAAAAC-ATAAAACATAGTCCCGCCCTAGAAAGAAATATACTTGAGTTATCAGATCGCGGCGTTCCTA
gi|15 : gGTAAACTAATTCTTTA--------G----AGCGATTGTTTGAACAGAT--ATGTTGCGTGATATTGTTACATGA--------GAATGTTTTCAAAGGCAG-ACG-ACACACAGAAC------TCGCATTTGG--GAAGACTAGAGAGAA--AAA-AATG-----------------AAACAGGAAAGACACAAA-TAGAAC--GCCTCGGTACGAATACAATGAAGTATGAATGC-CTACCTTGTAAC-TTGTCTCAATTCTTTTTGTACAATAAACAAGCCGTT
gi|16 : aaagtgtatgattgtttcttggaaaagtCCATTA-----TCTCAAGAGACAACAAATA--AAAAAGGGTACACCCATA-----T-----GTATCTTAGTAAACAAACTCTT----------G----TGCGAGTATTTGAATAGATCTATGGT------------CACATGAATATT-GAGAATGATTGTAAAGGAAA-ACA-ACATACATAAC------ACGTATGTGG-----------AGAGAAAGAAA-A---AAC-------------AAAACAGAAAAGAAACAAA-TATAAAAGGCC---ATACGAACAAAATAAAGTACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACAAGCCGTcct
gi|18 : CCATTA-----CCTCAGGAGATAACAAATG--AAAAAGTGTAAACCTGTA-----T-----GTCTCTGTGTAAACTAGCTCTT----------G----TGCGATTATTTGAATAGATATATGGTGTGTGACATTGTCACATGAATATTTGAGAATGGTGGTAAAGGAAG-ACA-ACATACAGAAC------TCGTATGTG-----------GAGAGAAAGAAA-AATAAA
gi|19 : TTTGAATATAT--ATGGTGCGTGGTATTGTCACATGAACATTTGAGAAAGA---CAA-------ACATGCACACAGAAC------TCGTATGCGGAAGGAAAAT-GAGGCGAATAGATAGTGAA--A-AAA-GAAGAAAAAACAGGAAAGAAATAAG-TGTAAC--GCC---Aa
gi|2 : AGTCCCACATTAGGTGCCAATTTTAAaa
gi|2 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaTTGGATATTTGACCTGCTGTCCATTA-----TCACATGAGACAACAAATA--AAAAAGAGTAAATCTATA-----T-----GCTTCTGGGTAAACAAACTCTT----------G----TTCGATTATTTGAATAGAGCTATGGTGAGTGGTATTGTCAAATGGATATTTGCGAATGATTGTAAAGGAAG-ACA-ACACACAGAAC------TCGTATGAGG--GGAGACTTGAGAGAAAGAAA-AGTGAACCG-AAA-G----GAAAA------------AAA-TATAAC--GCC---ATAC-AAGAGAATGAAGCATGAATGA-TAACCTTGTCACATTA---CA-----TTTTGCAC----AACAC-CCGTTTGAAT-----------------CACAC-----AC-ACACACACACAATGATTTAAAAATGATT------------------------GTGTT-------------ATCCTGT--TGTATCCGTGTAACGGTG----A----TCTGTAAAA---ATTC-----AG--CGTCTGCCGAAATTAACACATTT---TACACCGTTTGTAAA-ATTAAAATGTAC-CC-A-AATCTTTAATTTGGCA--AACT-TATACTAATTATGTTTATGGTAATCTAAAACGGAAATAAATCAAAATCGACCACTATTGCATCCTCAGCACATTATAAAT----A----TA----C-----AACTTACCGTATCAGAATTATTTCATCGTCGACATATTGGTCAAAAAAGTAAATCTTCT---AAATTA---AA---------------CACTTTCCCG--TT-T---TTCCGCAGAAAGTTCCCTGCTAGAAC-ACAAAGCTTAGTCCCAAGCTCGAAAGAAATATAGTTGCGTTCCTAGGTCGTGGTATTCtgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggatttggatatttgacctgctgtccattatcacatgagacaacaaataaaaaagagtaaatctatatgcttctgggtaaacaaactcttgttcgattatttgaatagagctatggtgagtggtattgtcaaatggatatttgcgaatgattgtaaaggaagacaacacacagaactcgtatgaggggagacttgagagaaagaaaagtgaaccgaaaggaaaaaaatataacgccatacaagagaatgaagcatgaatgataaccttgtcacattacattttgcacaacacccgtttgaatcacacacacacacacacaatgatttaaaaatgattgtgttatcctgttgtatccgtgtaacggtgatctgtaaaaattcagcgtctgccgaaattaacacattttacaccgtttgtaaaattaaaatgtacccaaatctttaatttggcaaacttatactaattatgtttatggtaatctaaaacggaaataaatcaaaatcgaccactattgcatcctcagcacattataaatatacaacttaccgtatcagaattatttcatcgtcgacatattggtcaaaaaagtaaatcttctaaattaaacactttcccgtttttccgcagaaagttccctgctagaacacaaagcttagtcccaagctcgaaagaaatatagttgcgttcctaggtcgtggtattcat
gi|20 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaagtcccacattaggtgccaattttaatgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggat-A---TTCCGCATAAAGTTCCCGGCAAAAAC-ACAAACCATAGTTCCGGTTACGAAAAAAATATAACTGTGTTCTTAGGTCGTGGCGTTCCTACTG-TAAat
gi|21 : ttcatacggataTCCTCAACA--T----GATCTAAT----TA----CG----A-CTTATAGATGTAGAATTAGTTTATCTTCGCTTTGTTggagggtatccaatacgtccattatgcgtgagcgacc
gi|3 : gaagatgactAAACATATA-----T-----GTCTCTAGGTTAACAAACTCTT----------ACAAATGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGCATATCTGAGAATGATTGCAAAGGATG-ACA-ACACACAAAACTTGTAGTCGTATGTTG--GGAGACTCGAGAGAAAGAAA-AATGAACC------------------GAAAAGAAACAAACTA-AAC--GCC---ATACGAACCAAATGAAGCATGAAAGC-CTACCTTGTCACATTG---TA-----TCTTGCAC----AACACACCGTTTGAAT---tttc
gi|3 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggATGATTTATAAATGAATGTGTCTCTTTGTTG-TTTCTAAACGTGTTCAT--------TTATCCTGTTGT--ATGCGTGTCACGATG----A----CC----tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|3 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAAATAAAGACTTCCATTGCATCCTCAACACAT----AAT----T----TAATCAC-----AACTTACCGAATCAGAGATATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAA--------GGTGGATACTTTCCCG--TT-A---TTCCGCAAAAAAATCCCGGCTAGAAC-ACAAAACATAGTCCCGACCTCCGAAGAAATATAGCTGCATTCTTTTGTAGTGATGTTCCTACTGC-AAT---GCAAACCACAAAT---ACtgtcaccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|4 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttATTGCATCCTCAACACAT----GGT----T----TAATCAC-----AGCTTACTGAATCAGAGTTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAG--------GGTGGACACTTTCCCG--TT-A---TTCCGCAAAAAAATCCCGGCTAGAAC-ATAATACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGATGTTCCTACTGC-AAT---GCAAAC--CAAAT---AC
gi|5 : ATTGCATCCTCAACACAT----AAT----T----TAATCAC-----AACTTACCGAATCAGAGATATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAA--------GGTGGATACTTTCCCG--TT-A---TTCCGCAAAAAAATCCCGGCTAGAAC-ACAAAACATAGTCCCGACCTCCGAAGAAATATAGCTGCATTCTTTTGTAGTGATGTTCCTACTGC-AAT---GCAAACCACAAAT---ACacaacatcatgacatctgtcctttatatcgatataagacttgatattagacagcagcgtgtatttatttgtggaaaatggataagacgtggtagataaagaaacatcacgtatataaatgcataagataaaaattgaaaattgatgatcatcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcacacgaaaaaggttttttgaatatatagtaaaaccttcctttaccaatgctaaaatgtgacaaactatttgtaatgggaaccaattgataacaaaataaacagatcatcctatgggaggatgcgtattcttgacttttctaaatatttgttgatggttttcattattattacgtttaaaaacaaatatgtttcttctctctgttcagagaatcaaactaaatattcataaaaacatattattattatatgcatccgattataatcaagtcagtatgcttttttattgataagtataagatgataatgagatgaaatatta
gi|6 : GGTAAACCTATA-----TAATATGTCTCTGGGTAGACAAACTCTTTAGAGTTCTTG----TGCGATTATTTGAATACATCTATGTTGCGTGGCGTTGCCACATGACTAGTTGAGAATGATTGCAAAGGACG-ACA-ACAC------C------T------------GA-ACTCGAGAGTAAGAAA-GGTGAAACG-AAATG----AACAACAGAAAAGAAACAAA-TATAAC--GCC---ATCCGAACATAATAAAGCACGAAGTC-CTACTTTGTCACATTT---GA-----TTTTGCAC----TACACGCCGTTTAAAT---------------------T-----AC-ATGCACACACAATGATTT-AAAATTATTATGTAA------------CTAAATGTGTTCATTTATCCTGTTATCCTGT--T--ATCCATGTCACGATGACATA----TC----AAA---ATTC-----GG--CGCCTGCCGAAATGAACACATTT---TACATCGTTCGTAAA-AT------GTACACA-A-A-TCTCTTATTTGGCATAAA-T-TTTAA-AATTATGTTTATGGCAATTTAAAACGGAAATAATTCAATACCGACTAACATTGCATCCTCAACACAC----GAT----T----TA----CTTAAAA-CTTACCACATCAGAacaacatcatggcatatgtcctttatatcgatatgagacttgatatcagacagcggcgtgtatttatttgtggaaaatggaaaggacatggtagataaagaaacatcacgtatataaatacatatgatgaaaatagaaaattgatgatcgtcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcaaacgataaagtattttttaatatatagtaaacttttctttaccaatgcttatatgtgacaaactatttgttatgagaaccaattgataacaaaataaacagaccatcctatggaaggatgcgtattcttgacttttctaaacagttgttgatggttttcattattattacgcttagaaacaaatatgctgcttctctctgttcagagaatcaaactatatattcatcaacaaatattactataggcatccgattataatataatccagtcagtatgcttttttattgataagtataagatgataatgagatgaaata
gi|7 : ttaaactactgacatacatttatctacttacatgtttggtacacaatgtgacatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACAGAATAAAGCCTGAAGGCGCTACCTTG-CAGTCTGTCCCA-----TTTTAT---------------TTTGAAC---AACTGAAGAATAGTTCGTGTTTGGATTACACACACACAA--------AACTGATTATGCAAATTTCC--------AACTGTGTTTAT--------GTATCCTGT--T--ATCCGTGTGACAGTG----ACCTGTC----AGATTCATTTGTTTTAGTTCGTCTGCCGAAATGGACACATAC---AACACAGCTCGTTAATAT------GTAC-AG-ATA-TTATTTATTTCGCA-GTA-TATATACTATTTATATTTATGGTATTTCTGACCGGGAATAATTCGAAAATGACTATAATTACATCCTCAATACAT----GAT----T----TG----CTTACAA-CTGACCGATTCAGAATTATTTTATCATCGCTTTTTTTGTC-----ATT--TTTTTCTGCAAAAT------AT--------GGCGGACGC-ATACGG--TT-ATGTTTCTG--AAAAGCTCCCGGCAAAA
gi|8 : tTTGGATATTCGACCTGCTGTCAATTAATTTATCTTAGGAGACAACAAATACAAAAAAGGGCAA-CATATA-----T-----GTCTCTGGGTTAACAAACTCTTACAA------G----TGTGATTATTTGAATAGATCAATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-CCACACAGAACTCGTAGTCGTATGTGG--GGAGACTCGAG---AAAAAA-AATGAACC------------------AAAAAGAAACAAA-TAAAAC--GCC---ATACGAACAAAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TCCT---C----AACACt
gi|8 : ttcagggacttgaacctatgatcgtttgttaacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaacttacatgtatcgtaaacagggacattttgatCATTGCATCCTCAACACAT----GGT----atggt
gi|9 : ttcagggacttgaacctatgatcgtttgttaacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaacttacatgtatcgtaaacagggacattttgatttggatattcgacctgctgtcaattaatttatcttaggagacaacaaatacaaaaaagggcaacatatatgtctctgggttaacaaactcttacaagtgtgattatttgaatagatcaatggtgcgtggtattgtcacatgaatatttgagaatgattgcaaaggaagacaccacacagaactcgtagtcgtatgtggggagactcgagaaaaaaaatgaaccaaaaagaaacaaataaaacgccatacgaacaaaatgaagcacgaaggcctaccttgtca-----AC-ACACACACACAATG---------------TGTCACTTTCTTT-TTTCTTAATGTGTTCAT------------------------CCGTGTCACGGTG----A----CC---------------------------TGTCAA--------CATTT---AACACCGTTCGTAAA-AT------GTAC-CC-A-AATCTTTAATATGGCATGAA-T-TATACCAATTGTGTTGATGGTAATTCAAAACGGAAATAATTCAATACCGACTACCATGGCATCTTCAACACAT----GAT----TAGCTTA----C-----AACTTACCGAATCAGAATTATTTCACCGTCGCCATACTGGTCAAAAAAGTAACTCTTCT---AAATTA---AAT--------GGCGGACACTTTCCAG--TT-A---TTCCGCATAAAGTTCCCGGCAAGAAC-ACAAAACATAGTCCCAGTCTCGGAAGAAATATTACTGTGTTCTTAGGTGGTGAC
blockSeqs : ATTTA CA T TAATAT TAAAGTCCGTG C G T TTGTAG AA G C T G AAAAGAAGAA CA C G AG TCG G G TCT ATTCT CA AATA CG AACTGAAGAATAGTTCGTGTTTGG T N N NNN A C AATGTTT TTATCCTGT TGT ACCTGTCAGATTCATTTGTTTTAGTT C GTT T TAAAAT CCA TA T C A TATA GTACTTACAA G GCA GGC TGACATTTA T A AA A TGT T . TT . CC . T . . . G GCGACC
blockSeqs : . . T T TAGAGTTCTTG C . . TCGTAG . G A . A TCGAAAAGA CA . G . . C . TCC . TA . AG NNNNNNNNNNNNNNNNNNNNNN . A A TAA G A CTTGTTT T TGT ACCTGTCAAAGTTCAG C . . . ACA AA T . . . TTACTTTCAA T . . T A T . . . T . TA . CC .
blockSeqs : . . T T ACAAA A . . . . A T . A ACGAAATGA CA . T . . A . . . CA . AG CACAC . G A TAA G C GTTGTTT T T ATCTGTAAAAATTCAG T . . . AC TA T . . . TTACTTACAA T . . T T G . . . A . CA . T .
blockSeqs : . . T T ACAAG C . . . . G C . G CCGAAAGG CA . T . . G . . . CA . CA T . A A TAT A A CTTTTTT G T ACATATCAAAATTCGG G . . . CC AA T . . . CTAATTACGA A . . A T C . . . T . CA . C .
blockSeqs : . . C T TAG C . . . . G C . G CC CA . T . . A . . . CA . CG . A A TA A C CC . T ACC G . . . AG A T . . . TTAATCACAA A . . G T C . . . A . CA
blockSeqs : . T G C . . . . G C . A CC . . T . . T . . . CA . C . . . . . . . . . . . CC A . . . . TTAATCACAG A . . A T C . . . T .
blockSeqs : T G C . . . . . . . G C . . A . . G . . . T . . . . . . . . . . . . . TTAATCACAA A . . T T C . . . T .
blockSeqs : G . . . . . . . . A . . . . . . A . . . . . . TTACTTAAAA A . . T A G . . . T .
blockSeqs : . . . . . . . . . . TTGCTTACAA . . . . T A . . . A .
blockSeqs : . TAGCTTACAA . . A
blockSeqs : . ATACAA
blockSeqs : .
blockSeqCons : T********** CCAAAGA******* CA AACGN********************** NTTGTTT* T**** ACCTGTCAAAATTCGG****************** NA* TTACTTACAA************* CA* *** C* ***
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTCGACCTGCTGTCCATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----T-----GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACCG-AAA-G----AAAAACAGAAAAGAAACAAA-TATAAC--GCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACACGCCGTTTGAAT---AACTGAAGAATAGTCNNNN-----AC-ACGCACACACAATGATTTAAAAATGATTGTGTCACTTTCTTG-TT-CTAAATGTGTTCAT--------TTATCCTGT--T--ATCCGTGTCACGGTG----A----TC----AAA---ATTC-----AG--CGTCTGCCGAAATNAACACATTT---TACACCGTTCGTAAA-AT------GTAC-CC-A-A-TCTTTAATTTGGCATGAA-T-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACAT----GAT----T----TA----C-----A-CTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACACTTTCCCG--TT-A---TTCCGCAAAAAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGCTAAT---GCAAACCACAAAT---ACCGTAACTAGTGTATTCTATTACGTGNTTGTTCAGCGGTGTCTGTAGCGACCGATACTATGT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTCGACCTGCTGTCCATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATAT----------GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACCAAAGA-------AAAACAGAAAAGAAACAAA-TATAAC--GCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTGTCACATTG---CA-----TTTTGCAC----AACACGCCGTTTGAATAACGN----------------------AC-ACGCACACACAATGATTTAAAAATGATTGTGTCACTTTNTTGTTT-CTAAATGTGTTCAT--------TTATCCTGTT----ATCCGTGTCACGGTGACCTGTCAAAATTCGG------------------CGTCTGCCGAAATNAACACATTT---TACACCGTTCGTAAA-AT------GTAC-CC-ANA-TCTTTAATTTGGCATGAA-T-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACAT----GATTTACTTACAA-------------CTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACACTTTCCCG--TT-A---TTCCGCAAAAAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGCA-AT---GCAAAC-ACAAAT---ACCGTAACTAGTGTATTCTATTACGTGNTTGTTCAGCGGTGTCTGTAGCGACCGATACTATGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTAGCAAATTGATTGATAACTCAGTGTGTTGTAAAAACTAGAGTTTAACATATTCGCTAGAGGTTAAATGTTATCTCACACACGAAAAAGAAGTATTTTTGAATATAAGACAAGGCCTTTCTTTAACGTGCAAAGGGTTAGTGACACAAATGTAATGAAAGCCAACTGAGTACAAAATAAACTGACCATCCTATGTAGGGATGTGTATTCTAGATTTTTAAACATTTAATTATGATTTTCCTTATTACTACATTAAGAAACAATATGGTTCAAATGTTAAGTTCATTCTATATGCTAGGAGACTCAAACTGACACTTTTATTCTTATAGTCTCCATTTATAATGCAGACAGTATGATTATTTTAATGATAATTATAAGAGATACATGGGATGAAATATGAG
Unaligned ( gi|17 ): TATTATAGACTTGTCTAAACAATTGATTATGGTTTTCATTTTTACTATTTAAAGAAACAATTTGGTTCAATTTTAAGTTACTTCTCTCTGTTAAAAGATTCAAACTGACTATCCATAAAATAAATATTCTTATAAGCATACAATCATAATCCAGACAGCATGCCTAAGATAAGAATGATTATAAGGTGATAAATGAGGTGAAAT
Unaligned ( gi|22 ): AACTACTGACATACATTTCTCTCCTACATGTTATCCACAATGTGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111 11111111111 555555555555555 222222 66666666666666666 1111111 11111 11111111 7777777777777777777777 22222222222222 111111 2222222222222222222222 111 222222222 111 111111 111111111 11111 222 111 1 1 1 1 222222
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 66666 99 7 0 66666666666 555555555555555 5 4 4 333333 55 1 4 4 1 33333333333333333 1 4 4 66 777 2 4 4444444 7777 11111 9999 66666666 777 8888888888888888888888 1 0 99999999999999 1 0 4 22 2 666666 3 22 0 0000000000000000000000 111 222222222 3 0 000 0 5 666666 0 6 6 5 5 1 1 2 777 777 555555555 1 4 55 3 666 1 4 33333 0 000 444 5 5 5 5 1 888888
lowQualScore : .................................................................................................................................. . ..... .. . . ........... ............... . . . ...... .. . . . . ................. . . . .. ... . . ....... .... ..... .... ........ ... ...................... . . .............. . . . .. . ...... . .. . ...................... ... ......... . . ... . . ...... . . . . . . . . ... ... ......... . . .. . ... . . ..... . ... ... . . . . . ......
lowQualScore : 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 77777 22 1 1 00000000000 777777777777777 0 0 0 000000 55 6 1 0 4 77777777777777777 7 4 7 11 888 7 4 4444444 9999 11111 4444 11111111 888 7777777777777777777777 7 3 44444444444444 4 1 4 44 5 000000 1 44 1 5555555555555555555555 777 222222222 0 7 000 7 7 444444 7 6 5 0 0 8 5 6 000 000 555555555 1 1 55 6 444 0 0 77777 8 000 000 5 0 5 0 0 000000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTCGACCTGCTGTCCATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----T-----GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACC--AAA--G----AAAAACAGAAAAGAAACAAA-TATAAC--GCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTG-------TCACATTG---CA-----TTTTGCAC----AAC--------A---CGCCGTTTGAAT-----------------CACACACACGCACACACAA--------------TGATTTAAAAATGATTGTGTCACTTTCTTGTTTCTAAATGTGTTCATTTAT--------CCTGT--T--ATCCGTGTCACGGTGACCTGTCAAA---ATTCG-----G--CGTCTGCCGAAATNAACACATTT---TACACCGTTCGTAAA-AT------GTACCCAAATCTTTAATTTGGCATGAA-T-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACATGATTTACTTACAACTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACACTTTCCCG--TT-A---TTCCGCAAAAAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGC--A--ATGCAAACCACAAAT---ACCGTAACTAGTGTATTCTATTACGTGNTTGTTCAGCGGTGTCTGTAGCGACCGATACTATGT
Reference ( family-774 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCACATTAGGTGCCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTCGACCTGCTGTCCATTA-----TCTCAGGAGACAACAAATA--AAAAAGGGTAAACCTATA-----T-----GTCTCTGGGTAAACAAACTCTT----------G----TGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TCGTATGTGG--GGAGACTCGAGAGAAAGAAA-AGTGAACC--AAA--G----AAAAACAGAAAAGAAACAAA-TATAAC--GCC---ATACGAACAGAATGAAGCACGAAGGC-CTACCTTG-------TCACATTG---CA-----TTTTGCAC----AAC--------A---CGCCGTTTGAAT-----------------AACGNACACGCACACACAA--------------TGATTTAAAAATGATTGTGTCACTTTNTTGTTTCTAAATGTGTTCATTTAT--------CCTGT--T--ATCCGTGTCACGGTGACCTGTCAAA---ATTCG-----G--CGTCTGCCGAAATNAACACATTT---TACACCGTTCGTAAA-AT------GTACCCANATCTTTAATTTGGCATGAA-T-TATACTAATTATGTTTATGGTAATTTAAAACGGAAATAATTCAATACCGACTACCATTGCATCCTCAACACATGATTTACTTACAACTTACCGAATCAGAATTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACACTTTCCCG--TT-A---TTCCGCAAAAAGTTCCCGGCNAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGGCGTTCCTACTGC--A--ATGCAAA-CACAAAT---ACCGTAACTAGTGTATTCTATTACGTGNTTGTTCAGCGGTGTCTGTAGCGACCGATACTATGT
gi|1 : AGTCCCATATTAGGTACCAATTTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGTTGGATATTTGACCTTCTGTCAATTA-----TCTCAGGAGACAACAAATA--AGAAAGGG-AAACCTATACAGTGT-----GTCTCTGGGTAAACAAACTATT----------G----TGCGATTATTTGAATAGATATATGGTGCGTGGTATTGTCACATAAATATTTGAGAATGATTGCAAAGGAAG-ACA-ACACACAGAAC------TTTTATGTGG--GGAGAACCGAGAGAAAGAAA-AGTGAACCGAAAA--G----AAAAACCGAAAACAAAGAAA-TATAAC--GCC---ATACGAACAAAATGAAGCACGAAGGC-CTAACTTG-------TCACACTG---CA-----TTTTGCA------AC--------A---GGCCGTTTGAAT-----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTCAAAAATGATTGTGTCACTTTCTTATT-CGAAATGTGTTCATTTGT--------CCTGT--TTGATCCATGTCACGGTGA-------AA---ATTCA-----G--CGTCTGCCGAAATGAACACATTT---TTCACCGTTTGTAAA-AT------GTACCCA-ATCTTTAATCTGGCCAGAA-T-TATACTAATTATGTTTATGGTAATTTAATACGGAAACAATTCGATACCAACGACCATTGCATCCCTAACGCATGATTT-------ACTTACTGAATCAGATCTATTTCATCGTCGCCATGTTGAT-AAAAAAGTAAATCTTCT---AAATTA---AAT--------GGCGGACACT--------TT-A---TTCTGCAAAAAGTTCCCGACAAGAATAAAAAAACATAGT--CGACCTCGGAAGAAATATAACTTGGTTCTTAGGTCGTGGCGTTCCAAATGCTTACCAGACAAA--ACAAATTTGACCATAAC-AGTGTATTCTATTACGTGTTTATTCAGCAATGTCTATA------GATATTATAT
gi|11 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttgtaagtcaaactcacA-----TCTCAGGAGACAACAAA-------ACCGG----CCTATA-----T-----ATCTCTGGGTAAATACACTCTTTAAAGTCCGTG----TGCAGTTATTTGAACAGATCTATAGTGCGTGTTATTGTCACATGGATATTTGAGAATGATTGCAAAGGGAGGACA-ACACACATAAT------TCGTATGTGG--GGAGACTCGAGAGAATGAAA-TGTGAATCGAAAA--G----AAAAACAGAAAAGAAACAAA-AAGAAC--GCC---TTACGAACAGAATGAAGCACGAAGGC-CTACCTTG-------TCACATTT---AA-----TTTTGCAC----AAC--------A---CGCAGTTTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------NNNNNNNNNNNTGATTATGTCGCTTTAATGTTTCTTAATGTGTTCATTTAT--------CCTGT--T--ATCCGTGTCATGGTGAgaatgcta
gi|12 : TCTTAAACTTGGCATGAA-T-TATACTAAATATGTTTATGGTAATCTAAAACGGAAATAAATAAATACCGACTACCATTGCATCCTTAACACGTGATGTACTTACAACTTACCGAATCAGAATTATTTCATCGTTGCCATGCTGGTCGAAAAAGTAAATCTTCT---AAATTAGGCAGTGACATTTAGGCTGACACTTTCCAG--TT-T---TTTCGCAACAAGTTCCTAGCTAGAAC-ACAAAACATAGTCCCGACCTCGGAAGAAATAAAGCTGCGTTCTAAAGTCGTGTTGTTCCTACTGT--T--ATGT--A-TACAAAT---ACTGTAACTAGT-TATTTTA-TA-GTAGTTGTTTAATGGTATCTGTAGCGACCGATACTATGTt
gi|13 : CAC--------------TGATTTAAAAATGATTGTGTCAATTTCTTGTTTCTAAATATGTGC------------------------ATCCGTGTCACGGTGACCTGTCAAA---GTTCA-----G--CGTCTGCCGAAATCAACATATTT---TACACCGTTCGTAAA-TT------GTACCCAAATCTTTAATTTAGCATGAA-T-TATAATAATTATGTTTATGGCATTTTCAAACGGAAATAATTCAACACCGACTACCATTCCATCCTCAACACATGATTTACTTTCAACTTACCGAATCAGAATTATTTCATTGTCGCCATGCTGGTCTAAAAAGTAAA---TCT---AAATTA---AAT------------TAAATTATATTGAATTAA---TT-------AAGTTCCCAGCT-GAAC-TCAAAACACAGTCCCGACCTCGGATGAAATATAGttacaaatact
gi|14 : AATCAA-ACATTTGTTTAAAC-GTTTGTAAA-AT------GTACACATATTTTCAATTTGGCATAAG-T-GATAATAATCATGTTTATGGTAATTGAAAACGGAAATGATTCATTACCGGCTACAATTGCATCCTCAACAGATGGTTTACTTACAACTTACCGATTCAGAA-TATTTTA--------ACGTTGGTATAAAAAGTAAATATTCT---AAATTA---AAT--------GGCGGACGCATATCGG--TT-A---TTCTTTAAACATTTCCCGGCAAAAAC-ATAAAACATAGTCCCGCCCTAGAAAGAAATATACTTGAGTTATCAGATCGCGGCGTTCCTA
gi|15 : gGTAAACTAATTCTTTA--------G----AGCGATTGTTTGAACAGAT--ATGTTGCGTGATATTGTTACATGA--------GAATGTTTTCAAAGGCAG-ACG-ACACACAGAAC------TCGCATTTGG--GAAGACTAGAGAGAA--AAA-AATG------------------AAACAGGAAAGACACAAA-TAGAAC--GCCTCGGTACGAATACAATGAAGTATGAATGC-CTACCTTG-------TAAC-TTGTCTCAATTCTTTTTGTACAATAAAC--------A---AGCCGTT
gi|16 : aaagtgtatgattgtttcttggaaaagtCCATTA-----TCTCAAGAGACAACAAATA--AAAAAGGGTACACCCATA-----T-----GTATCTTAGTAAACAAACTCTT----------G----TGCGAGTATTTGAATAGATCTATGGT------------CACATGAATATT-GAGAATGATTGTAAAGGAAA-ACA-ACATACATAAC------ACGTATGTGG-----------AGAGAAAGAAA-A---AAC--------------AAAACAGAAAAGAAACAAA-TATAAAAGGCC---ATACGAACAAAATAAAGTACGAAGGC-CTACCTTG-------TCACATTG---CA-----TTTTGCAC----AAC--------A---AGCCGTcct
gi|18 : CCATTA-----CCTCAGGAGATAACAAATG--AAAAAGTGTAAACCTGTA-----T-----GTCTCTGTGTAAACTAGCTCTT----------G----TGCGATTATTTGAATAGATATATGGTGTGTGACATTGTCACATGAATATTTGAGAATGGTGGTAAAGGAAG-ACA-ACATACAGAAC------TCGTATGTG-----------GAGAGAAAGAAA-AATAAA
gi|19 : TTTGAATATAT--ATGGTGCGTGGTATTGTCACATGAACATTTGAGAAAGA---CAA-------ACATGCACACAGAAC------TCGTATGCGGAAGGAAAAT-GAGGCGAATAGATAGTGAA-A--AAA--GAAGAAAAAACAGGAAAGAAATAAG-TGTAAC--GCC---Aa
gi|2 : AGTCCCACATTAGGTGCCAATTTTAAaa
gi|2 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaTTGGATATTTGACCTGCTGTCCATTA-----TCACATGAGACAACAAATA--AAAAAGAGTAAATCTATA-----T-----GCTTCTGGGTAAACAAACTCTT----------G----TTCGATTATTTGAATAGAGCTATGGTGAGTGGTATTGTCAAATGGATATTTGCGAATGATTGTAAAGGAAG-ACA-ACACACAGAAC------TCGTATGAGG--GGAGACTTGAGAGAAAGAAA-AGTGAACC-------------------GAAAGGAAAAAAA-TATAAC--GCC---ATAC-AAGAGAATGAAGCATGAATGA-TAACCTTG-------TCACATTA---CA-----TTTTGCAC----AAC--------A---C-CCGTTTGAAT-----------------CACACACACACACACACAA--------------TGATTTAAAAATGAT-----------------------TGTGTT-----AT--------CCTGT--TGTATCCGTGTAACGGTGATCTGTAAAA---ATTCA-----G--CGTCTGCCGAAATTAACACATTT---TACACCGTTTGTAAA-ATTAAAATGTACCCAAATCTTTAATTTGGCA--AACT-TATACTAATTATGTTTATGGTAATCTAAAACGGAAATAAATCAAAATCGACCACTATTGCATCCTCAGCACATTATAAATATACAACTTACCGTATCAGAATTATTTCATCGTCGACATATTGGTCAAAAAAGTAAATCTTCT---AAATTA---A---------------ACACTTTCCCG--TT-T---TTCCGCAGAAAGTTCCCTGCTAGAAC-ACAAAGCTTAGTCCCAAGCTCGAAAGAAATATAGTTGCGTTCCTAGGTCGTGGTATTCtgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggatttggatatttgacctgctgtccattatcacatgagacaacaaataaaaaagagtaaatctatatgcttctgggtaaacaaactcttgttcgattatttgaatagagctatggtgagtggtattgtcaaatggatatttgcgaatgattgtaaaggaagacaacacacagaactcgtatgaggggagacttgagagaaagaaaagtgaaccgaaaggaaaaaaatataacgccatacaagagaatgaagcatgaatgataaccttgtcacattacattttgcacaacacccgtttgaatcacacacacacacacacaatgatttaaaaatgattgtgttatcctgttgtatccgtgtaacggtgatctgtaaaaattcagcgtctgccgaaattaacacattttacaccgtttgtaaaattaaaatgtacccaaatctttaatttggcaaacttatactaattatgtttatggtaatctaaaacggaaataaatcaaaatcgaccactattgcatcctcagcacattataaatatacaacttaccgtatcagaattatttcatcgtcgacatattggtcaaaaaagtaaatcttctaaattaaacactttcccgtttttccgcagaaagttccctgctagaacacaaagcttagtcccaagctcgaaagaaatatagttgcgttcctaggtcgtggtattcat
gi|20 : aatggtggatctactattaaaaaatctgacgtacgcacccctaaaccccaatattttattaaaattaacgataaatcttccgaaaaacatgcatgcccagattttgtgttgcgcccccaagtctgccccatatagactaaaatactggatccactactgtttcgtggaacatctgtaagtcccacattaggtgccaattttaatgtatcatgacgagtaaaatatgaagccattcagggacttgaatctgtgatcgtttgtaaatagggcgaatatatctgcaaccgagatagccagattaatggcatacagttctctacttacatgtttcgtacacactgtgacatttggat-A---TTCCGCATAAAGTTCCCGGCAAAAAC-ACAAACCATAGTTCCGGTTACGAAAAAAATATAACTGTGTTCTTAGGTCGTGGCGTTCCTACTGT--A--Aat
gi|21 : ttcatacggataTCCTCAACA--TGATCTAATTACGACTTATAGATGTAGAATTAGTTTATCTTCGCTTTGTTggagggtatccaatacgtccattatgcgtgagcgacc
gi|3 : gaagatgactAAACATATA-----T-----GTCTCTAGGTTAACAAACTCTT----------ACAAATGCGATTATTTGAATAGATCTATGGTGCGTGGTATTGTCACATGCATATCTGAGAATGATTGCAAAGGATG-ACA-ACACACAAAACTTGTAGTCGTATGTTG--GGAGACTCGAGAGAAAGAAA-AATGAACC-------------------GAAAAGAAACAAACTA-AAC--GCC---ATACGAACCAAATGAAGCATGAAAGC-CTACCTTG-------TCACATTG---TA-----TCTTGCAC----AAC--------A---CACCGTTTGAAT-----------------tttc
gi|3 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggA--------------TGATTTATAAATGAATGTGTCTCTTTGTTGTTTCTAAACGTGTTCATTTAT--------CCTGTTGT--ATGCGTGTCACGATGACCTGTCAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|3 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAAATAAAGACTTCCATTGCATCCTCAACACATAATTTAATCACAACTTACCGAATCAGAGATATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAA--------GGTGGATACTTTCCCG--TT-A---TTCCGCAAAAAAATCCCGGCTAGAAC-ACAAAACATAGTCCCGACCTCCGAAGAAATATAGCTGCATTCTTTTGTAGTGATGTTCCTACTGC--A--ATGCAAACCACAAAT---ACccatatctttaatttgactttttaaataaagacttccattgcatcctcaacacataatttaatcacaacttaccgaatcagagatatttcatcgtcgccatgttggtcaaaaaagtaaatcttataaattaaaaggtggatactttcccgttattccgcaaaaaaatcccggctagaacacaaaacatagtcccgacctccgaagaaatatagctgcattcttttgtagtgatgttcctactgcaatgcaaaccacaaatac
gi|4 : aacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaactgacatgtatcgtaaacaggtagatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggaaacatatatgtctctaggttaacaaactcttacaaatgcgattatttgaatagatctatggtgcgtggtattgtcacatgcatatctgagaatgattgcaaaggatgacaacacacaaaacttgtagtcgtatgttgggagactcgagagaaagaaaaatgaaccgaaaagaaacaaactaaacgccatacgaaccaaatgaagcatgaaagcctaccttgtcacattgtatcttgcacaacacaccgtttgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatttataaatgaatgtgtctctttgttgtttctaaacgtgttcatttatcctgttgtatgcgtgtcacgatgacctgtcaccatatctttaatttgactttATTGCATCCTCAACACATGGTTTAATCACAGCTTACTGAATCAGAGTTATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAG--------GGTGGACACTTTCCCG--TT-A---TTCCGCAAAAAAATCCCGGCTAGAAC-ATAATACATAGTCCCGACCTCGGAAGAAATATAGCTGCGTTCTTAGGTCGTGATGTTCCTACTGC--A--ATGCAAA-C-CAAAT---AC
gi|5 : ATTGCATCCTCAACACATAATTTAATCACAACTTACCGAATCAGAGATATTTCATCGTCGCCATGTTGGTCAAAAAAGTAAATCTTAT---AAATTA---AAA--------GGTGGATACTTTCCCG--TT-A---TTCCGCAAAAAAATCCCGGCTAGAAC-ACAAAACATAGTCCCGACCTCCGAAGAAATATAGCTGCATTCTTTTGTAGTGATGTTCCTACTGC--A--ATGCAAACCACAAAT---ACacaacatcatgacatctgtcctttatatcgatataagacttgatattagacagcagcgtgtatttatttgtggaaaatggataagacgtggtagataaagaaacatcacgtatataaatgcataagataaaaattgaaaattgatgatcatcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcacacgaaaaaggttttttgaatatatagtaaaaccttcctttaccaatgctaaaatgtgacaaactatttgtaatgggaaccaattgataacaaaataaacagatcatcctatgggaggatgcgtattcttgacttttctaaatatttgttgatggttttcattattattacgtttaaaaacaaatatgtttcttctctctgttcagagaatcaaactaaatattcataaaaacatattattattatatgcatccgattataatcaagtcagtatgcttttttattgataagtataagatgataatgagatgaaatatta
gi|6 : GGTAAACCTATA-----TAATATGTCTCTGGGTAGACAAACTCTTTAGAGTTCTTG----TGCGATTATTTGAATACATCTATGTTGCGTGGCGTTGCCACATGACTAGTTGAGAATGATTGCAAAGGACG-ACA-ACAC------C------T------------GA-ACTCGAGAGTAAGAAA-GGTGAAAC--GAAATG----AACAACAGAAAAGAAACAAA-TATAAC--GCC---ATCCGAACATAATAAAGCACGAAGTC-CTACTTTG-------TCACATTT---GA-----TTTTGCAC----TAC--------A---CGCCGTTTAAAT---------------------TACATGCACACACAA--------------TGATTTAAAA-TTATTATGTAACT-----------AAATGTGTTCATTTATCCTGTTATCCTGT--T--ATCCATGTCACGATGACATATCAAA---ATTCG-----G--CGCCTGCCGAAATGAACACATTT---TACATCGTTCGTAAA-AT------GTACACAAATCTCTTATTTGGCATAAA-T-TTTAA-AATTATGTTTATGGCAATTTAAAACGGAAATAATTCAATACCGACTAACATTGCATCCTCAACACACGATTTACTTAAAACTTACCACATCAGAacaacatcatggcatatgtcctttatatcgatatgagacttgatatcagacagcggcgtgtatttatttgtggaaaatggaaaggacatggtagataaagaaacatcacgtatataaatacatatgatgaaaatagaaaattgatgatcgtcaatcaaactgtattgtagaatgtgctttagaatatccgtcagatttatatcccttgtataagtcgcaaacgataaagtattttttaatatatagtaaacttttctttaccaatgcttatatgtgacaaactatttgttatgagaaccaattgataacaaaataaacagaccatcctatggaaggatgcgtattcttgacttttctaaacagttgttgatggttttcattattattacgcttagaaacaaatatgctgcttctctctgttcagagaatcaaactatatattcatcaacaaatattactataggcatccgattataatataatccagtcagtatgcttttttattgataagtataagatgataatgagatgaaata
gi|7 : ttaaactactgacatacatttatctacttacatgtttggtacacaatgtgacatttggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACAGAATAAAGCCTGAAGGCGCTACCTTGCAGTCTGTCCCATTT---TA-----TTTTGAAC----AACTGAAGAATAGTTCGT-GTTTGGAT---------------------TACACACACACA------------------------AAACTGATTATGCAA-------ATTTCCAACTGTGTTTATGTAT--------CCTGT--T--ATCCGTGTGACAGTGACCTGTCAGATTCATTTGTTTTAGTTCGTCTGCCGAAATGGACACATAC---AACACAGCTCGTTAATAT------GTACAGATATTATTTATTTCGCA-GTA-TATATACTATTTATATTTATGGTATTTCTGACCGGGAATAATTCGAAAATGACTATAATTACATCCTCAATACATGATTTGCTTACAACTGACCGATTCAGAATTATTTTATCATCGCTTTTTTTGTC-----ATT--TTTTTCTGCAAAAT------AT--------GGCGGACGC-ATACGG--TT-ATGTTTCTG--AAAAGCTCCCGGCAAAA
gi|8 : tTTGGATATTCGACCTGCTGTCAATTAATTTATCTTAGGAGACAACAAATACAAAAAAGGGCAA-CATATA-----T-----GTCTCTGGGTTAACAAACTCTTACAA------G----TGTGATTATTTGAATAGATCAATGGTGCGTGGTATTGTCACATGAATATTTGAGAATGATTGCAAAGGAAG-ACA-CCACACAGAACTCGTAGTCGTATGTGG--GGAGACTCGAG---AAAAAA-AATGAACC--A-----------------AAAAGAAACAAA-TAAAAC--GCC---ATACGAACAAAATGAAGCACGAAGGC-CTACCTTG-------TCACATTG---CA-----TCCT---C----AAC--------A---Ct
gi|8 : ttcagggacttgaacctatgatcgtttgttaacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaacttacatgtatcgtaaacagggacattttgatCATTGCATCCTCAACACATGGTatggt
gi|9 : ttcagggacttgaacctatgatcgtttgttaacagggtcaattctctacaaaccgagatagctgacatacggtacatttctcaacttacatgtatcgtaaacagggacattttgatttggatattcgacctgctgtcaattaatttatcttaggagacaacaaatacaaaaaagggcaacatatatgtctctgggttaacaaactcttacaagtgtgattatttgaatagatcaatggtgcgtggtattgtcacatgaatatttgagaatgattgcaaaggaagacaccacacagaactcgtagtcgtatgtggggagactcgagaaaaaaaatgaaccaaaaagaaacaaataaaacgccatacgaacaaaatgaagcacgaaggcctaccttgtcaACACACACACACACACAA--------------TG---------------TGTCACTTTCTTTTTTCTTAATGTGTTCAT------------------------CCGTGTCACGGTGACCTGTCAA-----------------------------------CATTT---AACACCGTTCGTAAA-AT------GTACCCAAATCTTTAATATGGCATGAA-T-TATACCAATTGTGTTGATGGTAATTCAAAACGGAAATAATTCAATACCGACTACCATGGCATCTTCAACACATGATTAGCTTACAACTTACCGAATCAGAATTATTTCACCGTCGCCATACTGGTCAAAAAAGTAACTCTTCT---AAATTA---AAT--------GGCGGACACTTTCCAG--TT-A---TTCCGCATAAAGTTCCCGGCAAGAAC-ACAAAACATAGTCCCAGTCTCGGAAGAAATATTACTGTGTTCTTAGGTGGTGAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTAGCAAATTGATTGATAACTCAGTGTGTTGTAAAAACTAGAGTTTAACATATTCGCTAGAGGTTAAATGTTATCTCACACACGAAAAAGAAGTATTTTTGAATATAAGACAAGGCCTTTCTTTAACGTGCAAAGGGTTAGTGACACAAATGTAATGAAAGCCAACTGAGTACAAAATAAACTGACCATCCTATGTAGGGATGTGTATTCTAGATTTTTAAACATTTAATTATGATTTTCCTTATTACTACATTAAGAAACAATATGGTTCAAATGTTAAGTTCATTCTATATGCTAGGAGACTCAAACTGACACTTTTATTCTTATAGTCTCCATTTATAATGCAGACAGTATGATTATTTTAATGATAATTATAAGAGATACATGGGATGAAATATGAG
Unaligned ( gi|17 ): TATTATAGACTTGTCTAAACAATTGATTATGGTTTTCATTTTTACTATTTAAAGAAACAATTTGGTTCAATTTTAAGTTACTTCTCTCTGTTAAAAGATTCAAACTGACTATCCATAAAATAAATATTCTTATAAGCATACAATCATAATCCAGACAGCATGCCTAAGATAAGAATGATTATAAGGTGATAAATGAGGTGAAAT
Unaligned ( gi|22 ): AACTACTGACATACATTTCTCTCCTACATGTTATCCACAATGTGA