lowQualScore : 11111 1111 3333333333333333333333 22222222222222222222222 11111 1111111111 1111 1111111111 1111 4444444444444444444444
lowQualScore : 66666 2 8888 1 0000000000000000000000 4444 4 55 2 11111111111111111111111 22 4444 8888 66666 0 7777777777 3333 222 555 333 1 8 2 6666666666 33 55 6 1111 7777777777777777777777
lowQualScore : ..... . .... . ...................... .... . .. . ....................... .. .... .... ..... . .......... .... ... ... ... . . . .......... .. .. . .... ......................
lowQualScore : 22222 0 0000 6 2222222222222222222222 2222 0 55 1 77777777777777777777777 99 7777 5555 00000 1 4444444444 5555 777 111 222 8 7 2 1111111111 11 88 5 4444 1111111111111111111111
consensus : GTATATAAATATTACATT----CT-GTTGAGGGTGA-C--AGTAATA-T-T--TGTCAA-----CC---T----G-AGGGA-AT------TA-CTGTCAATCG---AGACG-AA----GTCGAG-GTT--G--ACAGTATTTC--T--NT--GAAGGTTGACAATAT-N--ACTGT---CACCCTCAACAGAATG--TA---AT-ATTNAT-TTTATT---------ATACCGAACAAAATATT-TACTGC--TATAA-T-AT----AT-ATGAT----TATATTA
Reference ( gi|5 ) : GTATATAAATATTACATT----GT-GTTGAGGGTGA-A--AGTAATA-T-T--TGCCAA-----AC---T----G-AGAGA-AT------TA-TTGCCAGTCA---AGACA-AA----GTCGAG-ATT--T--ACAGTATTTT--T--AT--GAAGGTTGACAATAT-A--ACTGT---CACCCTCAACAGAATA--TA---AT-ATTGAT-TTTATT---------ATACCAAACAAAATATT-TACTGC--CATAA-TGAT----GT-ATGAT----TATATTA
gi|7 : GTTTATAAATACTACGTT----CT-ACTGAGTGTGA-C--TGTCATA-T-A--AG-CAA-----CC---T----G-AGGGA-AG------TG-TCGTTAATTG---AGACG-AG----GTCGAG-GT-------CGATAGTTT--T--ATCCGAA----CATAATAT-G--AGTGT---CACCC---AGATAATGTTTT---AT-ATCTAT-TTTGTT---------TTACTGAAAGAAATATG-TATTGC--TAT------------T-A-GAT----TATAT
gi|20 : GTATATAATTATTACATT----AT-ATAGAGGGAGA-C--AGTAATA---T--TGTCAA-----CT---T----G-AATGA-AT------TA-CTGTTGACTG---CGACA-AA----GTCCA--ATT--T--Aaaat
gi|17 : taTATATAAATATTACATG----CT-GATGAGGGTGA-C--GGTAGTA---T--TGTCAA-----CC---T----G-GGTGA-AT------TA-CTGTCAAATG---AGATA-AA----GTAAAA-GTT--A--ATAGTATTT
gi|11 : TAGATTAATGTCACATT----CT-GTTGAGGGTGA-C--AGTAATA---T--TGTCTA-----CC---T----A-GGGAA-ATCTGTTCTA-TTAACAG------AAATG-AA----GTTATG-GTT--G--ACAGCATATT--T---C--CAAAGTTGATAATAT-
gi|18 : TATATAAATGTTACATT----TTTATCCAGAGTGA-C--GGTAATG-T-T--GGTCAATCA--AC---C----G-AGGTA-A--------------CAG------AGACA-AA----GTCGTG-GTT--G--ACAGT-TTCT--T--ta
gi|9 : ATATAAACAT----------AT-GTTGAGGGCGA-T--AGTCATA-T-T---GTCAA-----CC---T----TTAGAAA-AA------TA-TTG----TCA---ACATC-AACTTTGTCTTT-AAT--T--GTAGTATTTC--C--TT--GAAGAT-GACACTAT-C--ACTGT---CACCCTCAACAGAATG--TC---AT-ATTAAT-T
gi|6 : ACATAAATATGACATT----AT-ATTGAGGATGA-T--AATAATA-T-T--Tctttttcattataa
gi|2 : aacgctccattgtgcagcagtatttaaactgtcacgtgattagggaaataatttgtttccaatacagaaaataacatacagtttaacatcactttaagattcatatttaattattctgtgttatataagtatatatttagttcgatacgataTATAAATATTACATT----TT-TTTAAGGGTGA-C--AGTAATA-T-T---GTCAA-----CC---T----G-AGGGA-AT------TA-GTGTTGATCA---AT-CACAA----GTCGAG-ATT--G--ACAATATTTT--TTCAT----AGGT-GACAATGT-T--ACTGT---TGTCCTCAACAGAATG--TA---AC-ATTTAT-TTCATTATCATATAAATACCAAACAAAACATCATAATAT--AGTAA-TGCT----AT-AT-AC----AATATTAa
gi|1 : TATCAATATTACATTTTACAT-GTT-ACACTGA-A--A---------T--TGACAG-----CC---T----G-ACGGA-AC------AA-TTGTTAATCG---GAACT-AA----TTTAAACATT--G--ACAGTATATT--T--CC--GAAGGTTAACAATAT-A--ACTGT---CACTTTCAGCAGAATG--TT---TT-ATTTAT-TCTATT---------ATACAGACCAAAATAaatt
gi|2 : ATAAATGTTACATT----CT-GTTGAGGACAA-C--AGTAACA---T--TGTC-------ACCTAT----G-AAAAA-A-------TA-TTGTCAATCT---CGAC---------TTGTG-ATTGATCAACACTAATTC--C--CT---CAGGTTGACAATAT-T--ACTGT---CACCCTTAAAAAAATG--TA---AT-ATTTAT-gtgtaatctattagtaatacgatttatatgaatcatgcatttacttg
gi|9 : tATTAATATGACATT----CT-GTTGAGGGTGA-C--AGTGATA-G-T---GTCAT-----CT---T----C-AAGGA-AA------TA-CTACAATTAA---AGACA-AA----GTTGAT-GTT--G--ACAATATTTT--T--CT--AAAGGTTGACAATAT-G--ACTAT---CGCCCTCAAC---ATA--TGTTTAT-ATCTTT-TTCATT---------ATAttcattatcatataaataccaaacaaaacatcataatatagtaatgctatatacaatattaaatt
gi|4 : aATAAATATCACATT----CT-GTTGAGGGTAA-C--AGTGATA---T--TGTAAA-----CC---T----G-AGa
gi|22 : ttaagcgccttagcgagaaacattattttaactgtcacatgtttagaaacccaatatagaaaatgacatatagcgtaaaataattccaaaattaatatatattgtatttcctatattatattatggcagtaaatacctagtttgatacaaggaaACAAATATTACATT----AT-GTTTAGAGTGA-C--AGTTATA-T-
gi|25 : attgtcaagagaattgattTAAATATAACATT----AT-GTTGAGTGTGA-C--AGTAATA---T--TGTCAA-----TG---T----G-AGCCA-AT------TA-tttatcatatcgaa
gi|12 : ATATTACATT----CT-GTTGAGGGCAATAGTAGTAATA-T-T---GTTAACCTTTAC---T----G-GGA-A-AT------T---TGCCAACGA---AGACG-AG----GTTAAG-GTT--G--ACAGTATTAC--T--CT--GAAGGTTGCCAGTAT-at
gi|13 : aaatttATATTACATT----CT-GTTGAGGGCAA-C--AGTAGTAATAT--TGTTAACCTTTAC---T----G-GGA-A-AT------T---TGCCAACGA---AGACG-AG----GTTAAG-GTT--G--ACAGTATTAC--T--CT--GAAGGTTGCCAGTAT-
gi|8 : aatttATATTACATT----CT-GTTCAGGGTGA-C--ATTGATA---T--TGTCGA-----CT---T----C-AGGAA-AT------GA-TT----GTCA---A-CCG-AA----G-----------------GTATTTTCCC--CC--GAAGATTGACACCAT-T--ACTGT---CACCCTC
gi|16 : cgATTGTATT----CT-GTTGAGGGTGA-C--AGT--TA-T---------------AG---T----GTAGAGA-AT------CA-CTGTTAACCG---AGATA-AT----GTCAGC-GTT--G--GCAGTATCGT--T--CT--GAAGGTTGACAGTGT-A--cgctggcgcagttaacagtcaagtcacgcaattttattacactgttacccactggagcgga
gi|3 : ACT----AT-GTTGATGGTGA-C--TGAGAT--T-T--TGTTAT-----TA---T----G-AGAGA-AA------TA-CCGTCAACCA---AGACA-AA----GAAGTG-ATT--G--ACAGTGTTTG--C--TT--GAAGGCTGACAATAT-T--ACCGT---CGCCCTTTACAAAATA--CA---ATAATTG-T-CTTATT---------TTACAAAACACTATATC-TAA-GA--TATA---GAT----AT-ATTATAAAATATATt
gi|10 : tcactatatcataactga-GTTGATGGTGA------CAATA-T-TGCTGTCAA-----CT---T----T-CAGGA-AT------TA-TTATTAACTA---AGACA-AA----GTCGAG-AGT--G--ACAGTATT-------------------------T-A--ATTGT---CACCCATAACAAAATG--AA---AT-ACCGGTACTTATT-----------------TAAAATATT-TACTGC--TATAA-T--T----AT-ATG------TATAgcaga
gi|19 : TGAGGGTGA-G--AGGTATA-T-T---GTCAA-----GC---T----G-AGGTACATG-----TAGTTTTTAATCACCGAAACA-AA----GTCGAA-GTA--G--ACAATA-TTT--T--ATC-GAAGG
gi|8 : GAGGGTGA-C--AGTAATG-G-T---GTCAA-----TC---TTCGGG-GGAAA-AT-------A-CCTTCGGTT-----GACA-A------TC----ATT--T--CC--------------T--GAAG-TCGACAATAT-C--AATGT---CACCCTGAACAGAATG--TA---AT-ATCG
gi|17 : -ATT--TG-ACAGTAATTC-----AC--CCAGGTTGACAATAC-T--ACCGT---CACCCTCATCAGCATG--TA---AT-ATTTAT-cgctggcgcagttaacagtcaagtcacgcaattttattacactgttacccactggagcgga
gi|20 : tat--ACAGTAATTC-----AT--TCAAGTTGACAATAT-T--ACTGT---CTCCCTCTATATAATG--TA---AT-A---AT-TATATgagataaagtaaaagttaatagtattt
gi|11 : tagt--ACAG-ATTTC--C--CT----AGGTAGACAATAT-T--ACTGT---CACCCTCAACAGAATG--TG---AC-ATTAAT-CTtgactgcgacaaagtccaattta
gi|24 : t--ACAGTAATTC--C--AC--CA-GGATGACAATGT-C--ACTGT---CGCCCTCTACAAAATtctattaacagaaatgaagttatggttgacagcatatttccaaagttgataatatta
gi|22 : ATTGT--C--AA--GAGAATTGATTATAT-A--ACTGT---CACTCTAAACATAATG--TA---AT-ATTTGT-TTTATC---------ATATCGAAttactgagac
gi|21 : T--T--AT--GA-TGTTGAAAATAT-G--TTTAT---CA---TCAGCAGAATG--TA---AT-ATTAAA-TTTATT---------ATACCGAGCAAATCATT-TG-TGA--TATAA-
gi|10 : T--GAAAGTTGACAGCAA-T--ATTGT---CACCATCAAC
gi|12 : T--AAAGGTTAACAATATTACTACTAT---TGCCCTCAACAGAATG--TA---AT-ATAAAT-TTggaattattattaactaagacaaagtcgagagtgacagtatttaattgtcacccataacaaaatgaaataccggtacttatttaaaatatttactgctataattatatgtata
gi|13 : T--AAAGGTTAACAATATTACTACTGT---TGCCCTCAACAGAATG--TA---AT-ATAAAT-Tctgggaaatttgccaacgaagacgaggttaaggttgacagtattactctgaaggttgccagtat
gi|15 : T--GGAGGTTGAT--TGT-A--ACTTTTCTCACCTTCGACAGAATG--TA---AT-GCTTAT-TTTATT---------ATACTGAACAAAAAATG-TATTGA--TATAA-T-AT----ATCAT-AT----TATATTctgggaaatttgccaacgaagacgaggttaaggttgacagtattactctgaaggttgccagtat
gi|4 : AGGTTTACAATAT-C--ACTGT---TACCCTCAACAGAATG--TG---AT-ATTTAT-TTCCTT---------GTATCAAACTAGGTATT-TACTGC--CATAA-Ttag
gi|27 : ttaagcgccttagcgagaaacattattttaactgtcacatgtttagaaacccaatatagaaaatgacatatagcgtaaaataattccaaaattaatatatattgtatttcctatattatAGGTTTACAATAC-C--ACTGT---CACCTTCAACAGAATA--TA---AT-gag
gi|19 : AGCTTGACAATAT-A--CCTCT---CACCCTCAggat
gi|25 : TTGACAATAT-T--ACTGT---CACACTCAACATAATG--TT---AT-ATTgaggtacatgtagtttttaatcaccgaaacaaagtcgaagtagacaatattttatcgaagg
gi|14 : taGACAATAT-T--TCTAT---CATAGTCAACAGAATA--T----AT-GTTTAT-TTCATC---------AAACCGAACCGAGTATT-AACTGCTTCATAATTTATCTTAGT-ATAAT----TATATCAtgtgagccaattaat
gi|16 : tgaaACACTAT-A--ACTGT---CACCCTCAACAGAATA--CA---AT-aa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): AAATAGTATTTAACTGTCATATGTTGATAATATTGTTAACCGATGATTTATACCTGACGTATAGT
Unaligned ( gi|26 ): TTATGTGAAGTGTAGTAATAGAAGTGATTTATTGAAGTCATGTTG
Alignments
lowQualScore : 2222222 11111 1111111111 22222222222222222222222
lowQualScore : 1 2 0 1111111 333 11111 0 2 666 333 77777 2 2 5 2 33 666 1 444 66 1 3 3333333333 3 5 4 1 55 3 77777777777777777777777
lowQualScore : . . . ....... ... ..... . . ... ... ..... . . . . .. ... . ... .. . . .......... . . . . .. . .......................
lowQualScore : 5 4 7 8888888 999 11111 3 2 111 888 55555 4 4 2 7 77 999 9 777 88 0 1 4444444444 6 7 3 4 00 6 55555555555555555555555
consensus : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTGTCAACC---GA-G-ACGAAGTCGAG-GTTGACAG--TATTTCTCCGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTTAT-TTTATT---------ATACCGAACAAAATA-TNTACTGCT--A-TAAT-AT-A------T-ATGA-T----TATATTA
Reference ( family-731 ) : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTGTCAATC---GA-G-ACGAAGTCGAG-GTTGACAG--TATTTCTNTGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTNAT-TTTATT---------ATACCGAACAAAATA-TTTACTGCT--A-TAAT-AT-A------T-ATGA-T----TATATTA
gi|1 : TATCAATATTACATT----TTACATGTTACACTGAAA-T-T---GACAGCC---T-----GACGGA-AC---AA-TTGTTAATC---GG-A-ACTAATTTAAACATTGACAG--TATATTTCCGAAGGTTAACAATATAACTGT---CACTTTCAGCAGAATG--TTTTATTTAT-TCTATT---------ATACAGACCAAAATAGTGTAAT-CT--ATTAGT-A--A------T-ACGATT----TATAT
gi|10 : -GTTGATGGTGACA---ATA-T-TGCTGTCAACT---T-----TCAGGA-AT---TA-TTATTAACT---AA-G-ACAAAGTCGAG-AGTGACAG--TATTT--------------AAT-----TGT---CACCCATAACAAAATG--AAATACCGGTACTTATT-----------------TAAAATA-TTTACTGCT--A-TAAT--T-A------T-ATG-------TATAgaatcatgcatttacttg
gi|11 : TAGATTAATGTCACATTCT-GTTGAGGGTGACAGTAATA---T--TGTCTACC---T-----AGGGAA-ATCTGTT-CTATTAACA---GA-A-ATGAAGTTATG-GTTGACAGCATATTTCC---AAAGTTGATAATATTA
gi|12 : ATATTACATTCT-GTTGAGGGCAATAGTAGTAATAT--TGTTAACC---TTTACTG-GGAA-AT---T---TGCCAACG---AA-G-ACGAGGTTAAG-GTTGACAG--TATTACTCTGAAGGTTGCCAGTAT
gi|13 : aaatttATATTACATTCT-GTTGAGGGCAACAGTAGTAATAT--TGTTAACC---TTTACTG-GGAA-AT---T---TGCCAACG---AA-G-ACGAGGTTAAG-GTTGACAG--TATTACTCTGAAGGTTGCCAGTAT
gi|14 : aatttGACAATATTTCTAT---CATAGTCAACAGAATA--TA-TGTTTAT-TTCATC---------AAACCGAACCGAGTA-TTAACTGCTTCA-TAAT-TT-ATCTTAGT-ATAA-T----TATATCA
gi|15 : tgaaTGGAGGTTGAT--TGTAACTTTTCTCACCTTCGACAGAATG--TAATGCTTAT-TTTATT---------ATACTGAACAAAAAA-TGTATTGAT--A-TAAT-AT-A------TCAT-A-T----TATATTaa
gi|16 : ATTGTATTCT-GTTGAGGGTGACAGTTATA-G-T---GT---------------AGAGA-AT---CA-CTGTTAACC---GA-G-ATAATGTCAGC-GTTGGCAG--TATCGTTCTGAAGGTTGACAGTGTtag
gi|17 : TATATAAATATTACATGCT-GATGAGGGTGACGGTAGTA-T-T---GTCAACC---T-----GGGTGA-AT---TA-CTGTCAAAT---GA-G-ATAAAGTAAAA-GTTAATAG--TATTTat
gi|18 : TATATAAATGTTACATTTTTATCCAGAGTGACGGTAATG-T-T--GGTCAATCAACC-----GAGGTA-A-----------CA------GA-G-ACAAAGTCGTG-GTTGACAG----TTTCT
gi|19 : TGAGGGTGAGAGGTATA-T-T---GTCAAGC---T-----GAGGTACATG--TAGTTTTTAATCACCGA-A-ACAAAGTCGAA-GTAGACAA--TATTTTATCGAAGGt
gi|2 : TATAAATATTACATTTT-TTTAAGGGTGACAGTAATA-T-T---GTCAACC---T-----GAGGGA-AT---TA-GTGTTGATC---AA-TCAC-AAGTCGAG-ATTGACAA--TATTTTTTCATAGGT-GACAATGTTACTGT---TGTCCTCAACAGAATG--TAACATTTAT-TTCATTATCATATAAATACCAAACAAAACA-T-------C--A-TAAT-AT-A--------GTAA-TGC--TATAT
gi|20 : GTATATAATTATTACATTAT-ATAGAGGGAGACAGTAATA---T--TGTCAACT---T-----GAATGA-AT---TA-CTGTTGACT---GC-G-ACAAAGTCacaatattaaatt
gi|21 : taGTTGAAAATATGTTTAT---CA---TCAGCAGAATG--TAATATTAAA-TTTATT---------ATACCGAGCAAATCA-TTTG-TGAT--A-TAAcaattta
gi|22 : ttatgatGAGAATTGATTATATAACTGT---CACTCTAAACATAATG--TAATATTTGT-TTTATC---------ATATCGAA
gi|24 : attgtcaaATTTT-GTAGAGGGCGACAGTGACA-T-T---GTCATCC---T-----GGTGGA-AT---TA-CTGTTTACT---GA-G-AC
gi|25 : TAAATATAACATTAT-GTTGAGTGTGACAGTAATA---T--TGTCAATG---T-----GAGCCA-AT---TA-
gi|27 : AGGTTTACAATACCACTGT---CACCTTCAACAGAATA--TAATat
gi|3 : T-GTTGATGGTGACTGAGAT--T-T--TGTTATTA---T-----GAGAGA-AA---TA-CCGTCAACC---AA-G-ACAAAGAAGTG-ATTGACAG--TGTTTGCTTGAAGGCTGACAATATTACCGT---CGCCCTTTACAAAATA--CAATAATTGT-CTTATT---------TTACAAAACACTATA-TCTAA-GAT--A-TAG--AT-A------T-ATTA-TAAAATATATggat
gi|4 : tcactatatcataactgaactaAGGTTTACAATATCACTGT---TACCCTCAACAGAATG--TGATATTTAT-TTCCTT---------GTATCAAACTAGGTA-TTTACTGCC--A-TAAT-ATAA------T-ATgcaga
gi|5 : ttaagcgccttagcgagaaacattattttaactgtcacatgtttagaaacccaatatagaaaatgacatatagcgtaaaataattccaaaattaatatatattgtatttcctGTATATAAATATTACATTGT-GTTGAGGGTGAAAGTAATA-T-T--TGCCAAAC---T-----GAGAGA-AT---TA-TTGCCAGTC---AA-G-ACAAAGTCGAG-ATTTACAG--TATTTTTATGAAGGTTGACAATATAACTGT---CACCCTCAACAGAATA--TAATATTGAT-TTTATT---------ATACCAAACAAAATA-TTTACTGCC--A-TAATGAT-G------T-ATGA-T----TATATTAgag
gi|6 : AATATTATTAT---CATCCTCAATATAATG--TCATATTTAT-GTTATC---------GTATCGAACTAAATA-TATACTTAT--A-TAAC-AC-A------GAATAA-T----TAAAT
gi|7 : aacgctccattgtgcagcagtatttaaactgtcacgtgattagggaaataatttgtttccaatacagaaaataacatacagtttaacatcactttaagattcatGTTTATAAATACTACGTTCT-ACTGAGTGTGACTGTCATA-T-A--AG-CAACC---T-----GAGGGA-AG---TG-TCGTTAATT---GA-G-ACGAGGTCGAG-GTCGATAG--T-TTTATCCGAA----CATAATATGAGTGT---CACCC---AGATAATGTTTTATATCTAT-TTTGTT---------TTACTGAAAGAAATA-TGTATTGCT--A-T--T-A-------------GA-T----TATATta
gi|8 : ATATTACATTCT-GTTCAGGGTGACATTGATA---T--TGTCGACT---T-----CAGGAA-AT---GA-TTGTCAACC---GA------------AG-GT-----A--TTTTCCCCCGAAGATTGACACCATTACTGT---CACCCTCaaat
gi|9 : cgATTAATATGACATTCT-GTTGAGGGTGACAGTGATA-G-T---GTCATCT---T-----CAAGGA-AA---TA-CTA-CAATT---AAAG-ACAAAGTTGAT-GTTGACAA--TATTTTTCTAAAGGTTGACAATATGACTAT---CGCCCTCAACAT-ATGT-TTATATCTTT-TTCATT---------ATAcgctggcgcagttaacagtcaagtcacgcaattttattacactgttacccactggagcgga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATAGTATTTAACTGTCATATGTTGATAATATTGTTAACCGATGATTTATACCTGACGTATAGT
Unaligned ( gi|26 ): TTATGTGAAGTGTAGTAATAGAAGTGATTTATTGAAGTCATGTTG
Alignments
lowQualScore : 2222222 11111 1111111111 22222222222222222222222
lowQualScore : 1 2 0 1111111 333 11111 0 2 666 333 444 1 2 2 5 2 5 1 444 66 3 3333333333 3 1 4 1 55 3 77777777777777777777777
lowQualScore : . . . ....... ... ..... . . ... ... ... . . . . . . . ... .. . .......... . . . . .. . .......................
lowQualScore : 5 4 7 8888888 999 11111 3 2 111 888 111 5 4 4 2 7 1 9 777 88 1 4444444444 6 0 3 4 00 6 55555555555555555555555
consensus : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTGTTA---ACCGA-G-ACGAAGTCGAG-GTTGACAGTATTTTTCCGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTTAT-TTTATT---------ATACCGAACAAAATA-TNTACTGCT--A-TAAT-AT-A------T-ATGA-T----TATATTA
Reference ( family-731 ) : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTGTCA---ACCGA-G-ACGAAGTCGAG-GTTGACAGTATTTCTCCGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTTAT-TTTATT---------ATACCGAACAAAATA-TNTACTGCT--A-TAAT-AT-A------T-ATGA-T----TATATTA
gi|1 : TATCAATATTACATT----TTACATGTTACACTGAAA-T-T---GACAGCC---T-----GACGGA-AC---AA-TTGTTA---ATCGG-A-ACTAATTTAAACATTGACAGTATATTTCCGAAGGTTAACAATATAACTGT---CACTTTCAGCAGAATG--TTTTATTTAT-TCTATT---------ATACAGACCAAAATAGTGTAAT-CT--ATTAGT-A--A------T-ACGATT----TATAT
gi|10 : -GTTGATGGTGACA---ATA-T-TGCTGTCAACT---T-----TCAGGA-AT---TA-TTATTA---ACTAA-G-ACAAAGTCGAG-AGTGACAGTATTT--------------AAT-----TGT---CACCCATAACAAAATG--AAATACCGGTACTTATT-----------------TAAAATA-TTTACTGCT--A-TAAT--T-A------T-ATG-------TATAgaatcatgcatttacttg
gi|11 : TAGATTAATGTCACATTCT-GTTGAGGGTGACAGTAATA---T--TGTCTACC---T-----AGGGAA-ATCTGTT-CTATTA---ACAGA-A-ATGAAGTTATG-GTTGACAGCATATTTCC-AAAGTTGATAATATTA
gi|12 : ATATTACATTCT-GTTGAGGGCAATAGTAGTAATAT--TGTTAACC---TTTACTG-GGAA-AT---T---TGCCA---ACGAA-G-ACGAGGTTAAG-GTTGACAGTATTACTCTGAAGGTTGCCAGTAT
gi|13 : aaatttATATTACATTCT-GTTGAGGGCAACAGTAGTAATAT--TGTTAACC---TTTACTG-GGAA-AT---T---TGCCA---ACGAA-G-ACGAGGTTAAG-GTTGACAGTATTACTCTGAAGGTTGCCAGTAT
gi|14 : aatttGACAATATTTCTAT---CATAGTCAACAGAATA--TA-TGTTTAT-TTCATC---------AAACCGAACCGAGTA-TTAACTGCTTCA-TAAT-TT-ATCTTAGT-ATAA-T----TATATCA
gi|15 : tgaaGGAGGTTGAT--TGTAACTTTTCTCACCTTCGACAGAATG--TAATGCTTAT-TTTATT---------ATACTGAACAAAAAA-TGTATTGAT--A-TAAT-AT-A------TCAT-A-T----TATATTaa
gi|16 : tATTGTATTCT-GTTGAGGGTGACAGTTATA-G-T---GT---------------AGAGA-AT---CA-CTGTTA---ACCGA-G-ATAATGTCAGC-GTTGGCAGTATCGTTCTGAAGGTTGACAGTGTtag
gi|17 : TATATAAATATTACATGCT-GATGAGGGTGACGGTAGTA-T-T---GTCAACC---T-----GGGTGA-AT---TA-CTGTCA---AATGA-G-ATAAAGTAAAA-GTTAATAGTATTTat
gi|18 : TATATAAATGTTACATTTTTATCCAGAGTGACGGTAATG-T-T--GGTCAATCAACC-----GAGG---------------TA---ACAGA-G-ACAAAGTCGTG-GTTGACAG--TTTCT
gi|19 : TGAGGGTGAGAGGTATA-T-T---GTCAAGC---T-----GAGGTACATG--TAGTTTTTAATCACCGA-A-ACAAAGTCGAA-GTAGACAATATTTTATCGAAGGt
gi|2 : TATAAATATTACATTTT-TTTAAGGGTGACAGTAATA-T-T---GTCAACC---T-----GAGGGA-AT---TA-GTGTTG---ATCAA-TCAC-AAGTCGAG-ATTGACAATATTTTTTCATAGGT-GACAATGTTACTGT---TGTCCTCAACAGAATG--TAACATTTAT-TTCATTATCATATAAATACCAAACAAAACA-TC---------A-TAAT-AT-A--------GTAA-TGC--TATAT
gi|20 : GTATATAATTATTACATTAT-ATAGAGGGAGACAGTAATA---T--TGTCAACT---T-----GAATGA-AT---TA-CTGTTG---ACTGC-G-ACAAAGTCacaatattaaatt
gi|21 : taGTTGAAAATATGTTTAT---CA---TCAGCAGAATG--TAATATTAAA-TTTATT---------ATACCGAGCAAATCA-TTTG-TGAT--A-TAAcaattta
gi|22 : ttatgatGAGAATTGATTATATAACTGT---CACTCTAAACATAATG--TAATATTTGT-TTTATC---------ATATCGAA
gi|24 : attgtcaaATTTT-GTAGAGGGCGACAGTGACA-T-T---GTCATCC---T-----GGTGGA-AT---TA-CTGTTT---ACTGA-G-AC
gi|25 : TAAATATAACATTAT-GTTGAGTGTGACAGTAATA---T--TGTCAATG---T-----GAGCCA-AT---TA-
gi|27 : AGGTTTACAATACCACTGT---CACCTTCAACAGAATA--TAATat
gi|3 : T-GTTGATGGTGACTGAGAT--T-T--TGTTATTA---T-----GAGAGA-AA---TA-CCGTCA---ACCAA-G-ACAAAGAAGTG-ATTGACAGTGTTTGCTTGAAGGCTGACAATATTACCGT---CGCCCTTTACAAAATA--CAATAATTGT-CTTATT---------TTACAAAACACTATA-TCTAA-GAT--A-TAG--AT-A------T-ATTA-TAAAATATATggat
gi|4 : tcactatatcataactgaactaAGGTTTACAATATCACTGT---TACCCTCAACAGAATG--TGATATTTAT-TTCCTT---------GTATCAAACTAGGTA-TTTACTGCC--A-TAAT-ATAA------T-ATgcaga
gi|5 : ttaagcgccttagcgagaaacattattttaactgtcacatgtttagaaacccaatatagaaaatgacatatagcgtaaaataattccaaaattaatatatattgtatttcctGTATATAAATATTACATTGT-GTTGAGGGTGAAAGTAATA-T-T--TGCCAAAC---T-----GAGAGA-AT---TA-TTGCCA---GTCAA-G-ACAAAGTCGAG-ATTTACAGTATTTTTATGAAGGTTGACAATATAACTGT---CACCCTCAACAGAATA--TAATATTGAT-TTTATT---------ATACCAAACAAAATA-TTTACTGCC--A-TAATGAT-G------T-ATGA-T----TATATTAgag
gi|6 : AATATTATTAT---CATCCTCAATATAATG--TCATATTTAT-GTTATC---------GTATCGAACTAAATA-TATACTTAT--A-TAAC-AC-A------GAATAA-T----TAAAT
gi|7 : aacgctccattgtgcagcagtatttaaactgtcacgtgattagggaaataatttgtttccaatacagaaaataacatacagtttaacatcactttaagattcatGTTTATAAATACTACGTTCT-ACTGAGTGTGACTGTCATA-T-A--AG-CAACC---T-----GAGGGA-AG---TG-TCGTTA---ATTGA-G-ACGAGGTCGAG-GTCGATAGT-TTTATCCGAA----CATAATATGAGTGT---CACCC---AGATAATGTTTTATATCTAT-TTTGTT---------TTACTGAAAGAAATA-TGTATTGCT--A-T--T-A-------------GA-T----TATATta
gi|8 : ATATTACATTCT-GTTCAGGGTGACATTGATA---T--TGTCGACT---T-----CAGGAA-AT---GA-TTGTCA---ACCGA------------AG-GT-----ATTTTCCCCCGAAGATTGACACCATTACTGT---CACCCTCaaat
gi|9 : cgATTAATATGACATTCT-GTTGAGGGTGACAGTGATA-G-T---GTCATCT---T-----CAAGGA-AA---TA-CTA-CA---ATTAAAG-ACAAAGTTGAT-GTTGACAATATTTTTCTAAAGGTTGACAATATGACTAT---CGCCCTCAACAT-ATGT-TTATATCTTT-TTCATT---------ATAcgctggcgcagttaacagtcaagtcacgcaattttattacactgttacccactggagcgga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATAGTATTTAACTGTCATATGTTGATAATATTGTTAACCGATGATTTATACCTGACGTATAGT
Unaligned ( gi|26 ): TTATGTGAAGTGTAGTAATAGAAGTGATTTATTGAAGTCATGTTG
Alignments
lowQualScore : 2222222 11111 1111111111 22222222222222222222222
lowQualScore : 1 2 0 1111111 333 11111 0 2 666 333 444 77777 2 3 2 444 1 444 66 3 3333333333 3 1 4 1 55 3 77777777777777777777777
lowQualScore : . . . ....... ... ..... . . ... ... ... ..... . . . ... . ... .. . .......... . . . . .. . .......................
lowQualScore : 5 4 7 8888888 999 11111 3 2 111 888 111 33333 4 7 7 111 9 777 88 1 4444444444 6 0 3 4 00 6 55555555555555555555555
consensus : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTG---TTAA---CCGA-GACGAAGTCGAG-GTTGACAGTATTTT--TCCGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTTAT-TTTATT---------ATACCGAACAAAATA-TNTACTGCT--A-TAAT-AT-A------T-ATGA-T----TATATTA
Reference ( family-731 ) : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTG---TTAA---CCGA-GACGAAGTCGAG-GTTGACAGTATTTT--TCCGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTTAT-TTTATT---------ATACCGAACAAAATA-TNTACTGCT--A-TAAT-AT-A------T-ATGA-T----TATATTA
gi|1 : TATCAATATTACATT----TTACATGTTACACTGAAA-T-T---GACAGCC---T-----GACGGA-AC---AA-TTG---TTAA---TCGG-AACTAATTTAAACATTGACAGTATATT--TCCGAAGGTTAACAATATAACTGT---CACTTTCAGCAGAATG--TTTTATTTAT-TCTATT---------ATACAGACCAAAATAGTGTAAT-CT--ATTAGT-A--A------T-ACGATT----TATAT
gi|10 : -GTTGATGGTGACA---ATA-T-TGCTGTCAACT---T-----TCAGGA-AT---TA-TTA---TTAA---CTAA-GACAAAGTCGAG-AGTGACAGTATTT----------------AAT-----TGT---CACCCATAACAAAATG--AAATACCGGTACTTATT-----------------TAAAATA-TTTACTGCT--A-TAAT--T-A------T-ATG-------TATAgaatcatgcatttacttg
gi|11 : TAGATTAATGTCACATTCT-GTTGAGGGTGACAGTAATA---T--TGTCTACC---T-----AGGGAA-ATCTGTT-CTA---TTAA---CAGA-AATGAAGTTATG-GTTGACAGCATATT--TCC-AAAGTTGATAATATTA
gi|12 : ATATTACATTCT-GTTGAGGGCAATAGTAGTAATAT--TGTTAACC---TTTACTG-GGAA-AT---T---TG---CCAA---CGAA-GACGAGGTTAAG-GTTGACAGTATTAC--TCTGAAGGTTGCCAGTAT
gi|13 : aaatttATATTACATTCT-GTTGAGGGCAACAGTAGTAATAT--TGTTAACC---TTTACTG-GGAA-AT---T---TG---CCAA---CGAA-GACGAGGTTAAG-GTTGACAGTATTAC--TCTGAAGGTTGCCAGTAT
gi|14 : aatttGACAATATTTCTAT---CATAGTCAACAGAATA--TA-TGTTTAT-TTCATC---------AAACCGAACCGAGTA-TTAACTGCTTCA-TAAT-TT-ATCTTAGT-ATAA-T----TATATCA
gi|15 : tgaaGGAGGTTGAT--TGTAACTTTTCTCACCTTCGACAGAATG--TAATGCTTAT-TTTATT---------ATACTGAACAAAAAA-TGTATTGAT--A-TAAT-AT-A------TCAT-A-T----TATATTaa
gi|16 : tATTGTATTCT-GTTGAGGGTGACAGTTATA-G-T---GT---------------AGAGA-AT---CA-CTG---TTAA---CCGA-GATAATGTCAGC-GTTGGCAGTATCGT--TCTGAAGGTTGACAGTGTtag
gi|17 : TATATAAATATTACATGCT-GATGAGGGTGACGGTAGTA-T-T---GTCAACC---T-----GGGTGA-AT---TA-CTG---TCAA---ATGA-GATAAAGTAAAA-GTTAATAGTATTTat
gi|18 : TATATAAATGTTACATTTTTATCCAGAGTGACGGTAATG-T-T--GGTCAATCAACC-----GAGG------------------TAA---CAGA-GACAAAGTCGTG-GTTGACAGT-TTCT--T
gi|19 : TGAGGGTGAGAGGTATA-T-T---GTCAAGC---T-----GAGGTACATG--TAGTTT---TTAATCACCGA-AACAAAGTCGAA-GTAGACAATATTTT--ATCGAAGG
gi|2 : TATAAATATTACATTTT-TTTAAGGGTGACAGTAATA-T-T---GTCAACC---T-----GAGGGA-AT---TA-GTG---TTGA---TCAATCAC-AAGTCGAG-ATTGACAATATTTT--TTCATAGG-TGACAATGTTACTGT---TGTCCTCAACAGAATG--TAACATTTAT-TTCATTATCATATAAATACCAAACAAAACA-TC---------A-TAAT-AT-A--------GTAA-TGC--TATAT
gi|20 : GTATATAATTATTACATTAT-ATAGAGGGAGACAGTAATA---T--TGTCAACT---T-----GAATGA-AT---TA-CTG---TTGA---CTGC-GACAAAGTCacaatattaaatt
gi|21 : taGTTGAAAATATGTTTAT---CA---TCAGCAGAATG--TAATATTAAA-TTTATT---------ATACCGAGCAAATCA-TTTG-TGAT--A-TAAcaattta
gi|22 : ttatgatGAGAATTGATTATATAACTGT---CACTCTAAACATAATG--TAATATTTGT-TTTATC---------ATATCGAA
gi|24 : attgtcaaATTTT-GTAGAGGGCGACAGTGACA-T-T---GTCATCC---T-----GGTGGA-AT---TA-CTG---TTTA---CTGA-GAC
gi|25 : TAAATATAACATTAT-GTTGAGTGTGACAGTAATA---T--TGTCAATG---T-----GAGCCA-AT---TA-
gi|27 : AGGTTTACAATACCACTGT---CACCTTCAACAGAATA--TAATat
gi|3 : T-GTTGATGGTGACTGAGAT--T-T--TGTTATTA---T-----GAGAGA-AA---TA-CCG---TCAA---CCAA-GACAAAGAAGTG-ATTGACAGTGTTTG--CTTGAAGGCTGACAATATTACCGT---CGCCCTTTACAAAATA--CAATAATTGT-CTTATT---------TTACAAAACACTATA-TCTAA-GAT--A-TAG--AT-A------T-ATTA-TAAAATATATggat
gi|4 : tcactatatcataactgaactaAGGTTTACAATATCACTGT---TACCCTCAACAGAATG--TGATATTTAT-TTCCTT---------GTATCAAACTAGGTA-TTTACTGCC--A-TAAT-ATAA------T-ATgcaga
gi|5 : ttaagcgccttagcgagaaacattattttaactgtcacatgtttagaaacccaatatagaaaatgacatatagcgtaaaataattccaaaattaatatatattgtatttcctGTATATAAATATTACATTGT-GTTGAGGGTGAAAGTAATA-T-T--TGCCAAAC---T-----GAGAGA-AT---TA-TTG---CCAG---TCAA-GACAAAGTCGAG-ATTTACAGTATTTT--TATGAAGGTTGACAATATAACTGT---CACCCTCAACAGAATA--TAATATTGAT-TTTATT---------ATACCAAACAAAATA-TTTACTGCC--A-TAATGAT-G------T-ATGA-T----TATATTAgag
gi|6 : AATATTATTAT---CATCCTCAATATAATG--TCATATTTAT-GTTATC---------GTATCGAACTAAATA-TATACTTAT--A-TAAC-AC-A------GAATAA-T----TAAAT
gi|7 : aacgctccattgtgcagcagtatttaaactgtcacgtgattagggaaataatttgtttccaatacagaaaataacatacagtttaacatcactttaagattcatGTTTATAAATACTACGTTCT-ACTGAGTGTGACTGTCATA-T-A--AG-CAACC---T-----GAGGGA-AG---TG-TCG---TTAA---TTGA-GACGAGGTCGAG-GTCGATAGT-TTTA--TCCGAA----CATAATATGAGTGT---CACCC---AGATAATGTTTTATATCTAT-TTTGTT---------TTACTGAAAGAAATA-TGTATTGCT--A-T--T-A-------------GA-T----TATATta
gi|8 : ATATTACATTCT-GTTCAGGGTGACATTGATA---T--TGTCGACT---T-----CAGGAA-AT---GA-TTG---TCAA---C------CGAAG-------------GTATTTTCCCCCGAAGATTGACACCATTACTGT---CACCCTCaaat
gi|9 : cgATTAATATGACATTCT-GTTGAGGGTGACAGTGATA-G-T---GTCATCT---T-----CAAGGA-AA---TA-CTACAATTAA------A-GACAAAGTTGAT-GTTGACAATATTTT--TCTAAAGGTTGACAATATGACTAT---CGCCCTCAACAT-ATGT-TTATATCTTT-TTCATT---------ATAcgctggcgcagttaacagtcaagtcacgcaattttattacactgttacccactggagcgga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATAGTATTTAACTGTCATATGTTGATAATATTGTTAACCGATGATTTATACCTGACGTATAGT
Unaligned ( gi|26 ): TTATGTGAAGTGTAGTAATAGAAGTGATTTATTGAAGTCATGTTG
Alignments
lowQualScore : 2222222 11111 1111111111 22222222222222222222222
lowQualScore : 1 2 0 1111111 333 11111 0 2 666 333 444 77777 2 3 2 444 1 444 66 3 3333333333 3 1 4 1 55 3 77777777777777777777777
lowQualScore : . . . ....... ... ..... . . ... ... ... ..... . . . ... . ... .. . .......... . . . . .. . .......................
lowQualScore : 5 4 7 8888888 999 11111 3 2 111 888 111 33333 4 7 7 111 9 777 88 1 4444444444 6 0 3 4 00 6 55555555555555555555555
consensus : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTG---TTAA---CCGA-GACGAAGTCGAG-GTTGACAGTATTTT--TCCGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTTAT-TTTATT---------ATACCGAACAAAATA-TNTACTGCT--A-TAAT-AT-A------T-ATGA-T----TATATTA
Reference ( family-731 ) : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTG---TTAA---CCGA-GACGAAGTCGAG-GTTGACAGTATTTT--TCCGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTTAT-TTTATT---------ATACCGAACAAAATA-TNTACTGCT--A-TAAT-AT-A------T-ATGA-T----TATATTA
gi|1 : TATCAATATTACATT----TTACATGTTACACTGAAA-T-T---GACAGCC---T-----GACGGA-AC---AA-TTG---TTAA---TCGG-AACTAATTTAAACATTGACAGTATATT--TCCGAAGGTTAACAATATAACTGT---CACTTTCAGCAGAATG--TTTTATTTAT-TCTATT---------ATACAGACCAAAATAGTGTAAT-CT--ATTAGT-A--A------T-ACGATT----TATAT
gi|10 : -GTTGATGGTGACA---ATA-T-TGCTGTCAACT---T-----TCAGGA-AT---TA-TTA---TTAA---CTAA-GACAAAGTCGAG-AGTGACAGTATTT----------------AAT-----TGT---CACCCATAACAAAATG--AAATACCGGTACTTATT-----------------TAAAATA-TTTACTGCT--A-TAAT--T-A------T-ATG-------TATAgaatcatgcatttacttg
gi|11 : TAGATTAATGTCACATTCT-GTTGAGGGTGACAGTAATA---T--TGTCTACC---T-----AGGGAA-ATCTGTT-CTA---TTAA---CAGA-AATGAAGTTATG-GTTGACAGCATATT--TCC-AAAGTTGATAATATTA
gi|12 : ATATTACATTCT-GTTGAGGGCAATAGTAGTAATAT--TGTTAACC---TTTACTG-GGAA-AT---T---TG---CCAA---CGAA-GACGAGGTTAAG-GTTGACAGTATTAC--TCTGAAGGTTGCCAGTAT
gi|13 : aaatttATATTACATTCT-GTTGAGGGCAACAGTAGTAATAT--TGTTAACC---TTTACTG-GGAA-AT---T---TG---CCAA---CGAA-GACGAGGTTAAG-GTTGACAGTATTAC--TCTGAAGGTTGCCAGTAT
gi|14 : aatttGACAATATTTCTAT---CATAGTCAACAGAATA--TA-TGTTTAT-TTCATC---------AAACCGAACCGAGTA-TTAACTGCTTCA-TAAT-TT-ATCTTAGT-ATAA-T----TATATCA
gi|15 : tgaaGGAGGTTGAT--TGTAACTTTTCTCACCTTCGACAGAATG--TAATGCTTAT-TTTATT---------ATACTGAACAAAAAA-TGTATTGAT--A-TAAT-AT-A------TCAT-A-T----TATATTaa
gi|16 : tATTGTATTCT-GTTGAGGGTGACAGTTATA-G-T---GT---------------AGAGA-AT---CA-CTG---TTAA---CCGA-GATAATGTCAGC-GTTGGCAGTATCGT--TCTGAAGGTTGACAGTGTtag
gi|17 : TATATAAATATTACATGCT-GATGAGGGTGACGGTAGTA-T-T---GTCAACC---T-----GGGTGA-AT---TA-CTG---TCAA---ATGA-GATAAAGTAAAA-GTTAATAGTATTTat
gi|18 : TATATAAATGTTACATTTTTATCCAGAGTGACGGTAATG-T-T--GGTCAATCAACC-----GAGG------------------TAA---CAGA-GACAAAGTCGTG-GTTGACAGT-TTCT--T
gi|19 : TGAGGGTGAGAGGTATA-T-T---GTCAAGC---T-----GAGGTACATG--TAGTTT---TTAATCACCGA-AACAAAGTCGAA-GTAGACAATATTTT--ATCGAAGG
gi|2 : TATAAATATTACATTTT-TTTAAGGGTGACAGTAATA-T-T---GTCAACC---T-----GAGGGA-AT---TA-GTG---TTGA---TCAATCAC-AAGTCGAG-ATTGACAATATTTT--TTCATAGG-TGACAATGTTACTGT---TGTCCTCAACAGAATG--TAACATTTAT-TTCATTATCATATAAATACCAAACAAAACA-TC---------A-TAAT-AT-A--------GTAA-TGC--TATAT
gi|20 : GTATATAATTATTACATTAT-ATAGAGGGAGACAGTAATA---T--TGTCAACT---T-----GAATGA-AT---TA-CTG---TTGA---CTGC-GACAAAGTCacaatattaaatt
gi|21 : taGTTGAAAATATGTTTAT---CA---TCAGCAGAATG--TAATATTAAA-TTTATT---------ATACCGAGCAAATCA-TTTG-TGAT--A-TAAcaattta
gi|22 : ttatgatGAGAATTGATTATATAACTGT---CACTCTAAACATAATG--TAATATTTGT-TTTATC---------ATATCGAA
gi|24 : attgtcaaATTTT-GTAGAGGGCGACAGTGACA-T-T---GTCATCC---T-----GGTGGA-AT---TA-CTG---TTTA---CTGA-GAC
gi|25 : TAAATATAACATTAT-GTTGAGTGTGACAGTAATA---T--TGTCAATG---T-----GAGCCA-AT---TA-
gi|27 : AGGTTTACAATACCACTGT---CACCTTCAACAGAATA--TAATat
gi|3 : T-GTTGATGGTGACTGAGAT--T-T--TGTTATTA---T-----GAGAGA-AA---TA-CCG---TCAA---CCAA-GACAAAGAAGTG-ATTGACAGTGTTTG--CTTGAAGGCTGACAATATTACCGT---CGCCCTTTACAAAATA--CAATAATTGT-CTTATT---------TTACAAAACACTATA-TCTAA-GAT--A-TAG--AT-A------T-ATTA-TAAAATATATggat
gi|4 : tcactatatcataactgaactaAGGTTTACAATATCACTGT---TACCCTCAACAGAATG--TGATATTTAT-TTCCTT---------GTATCAAACTAGGTA-TTTACTGCC--A-TAAT-ATAA------T-ATgcaga
gi|5 : ttaagcgccttagcgagaaacattattttaactgtcacatgtttagaaacccaatatagaaaatgacatatagcgtaaaataattccaaaattaatatatattgtatttcctGTATATAAATATTACATTGT-GTTGAGGGTGAAAGTAATA-T-T--TGCCAAAC---T-----GAGAGA-AT---TA-TTG---CCAG---TCAA-GACAAAGTCGAG-ATTTACAGTATTTT--TATGAAGGTTGACAATATAACTGT---CACCCTCAACAGAATA--TAATATTGAT-TTTATT---------ATACCAAACAAAATA-TTTACTGCC--A-TAATGAT-G------T-ATGA-T----TATATTAgag
gi|6 : AATATTATTAT---CATCCTCAATATAATG--TCATATTTAT-GTTATC---------GTATCGAACTAAATA-TATACTTAT--A-TAAC-AC-A------GAATAA-T----TAAAT
gi|7 : aacgctccattgtgcagcagtatttaaactgtcacgtgattagggaaataatttgtttccaatacagaaaataacatacagtttaacatcactttaagattcatGTTTATAAATACTACGTTCT-ACTGAGTGTGACTGTCATA-T-A--AG-CAACC---T-----GAGGGA-AG---TG-TCG---TTAA---TTGA-GACGAGGTCGAG-GTCGATAGT-TTTA--TCCGAA----CATAATATGAGTGT---CACCC---AGATAATGTTTTATATCTAT-TTTGTT---------TTACTGAAAGAAATA-TGTATTGCT--A-T--T-A-------------GA-T----TATATta
gi|8 : ATATTACATTCT-GTTCAGGGTGACATTGATA---T--TGTCGACT---T-----CAGGAA-AT---GA-TTG---TCAA---C------CGAAG-------------GTATTTTCCCCCGAAGATTGACACCATTACTGT---CACCCTCaaat
gi|9 : cgATTAATATGACATTCT-GTTGAGGGTGACAGTGATA-G-T---GTCATCT---T-----CAAGGA-AA---TA-CTACAATTAA------A-GACAAAGTTGAT-GTTGACAATATTTT--TCTAAAGGTTGACAATATGACTAT---CGCCCTCAACAT-ATGT-TTATATCTTT-TTCATT---------ATAcgctggcgcagttaacagtcaagtcacgcaattttattacactgttacccactggagcgga
blockSeqs : C T TTGCT AAC TTACT C CTG AGT CAA TCACC T A . TCC T TCT TT A ATCATATAAA . T C C TC . TTATCTTAGTATAAT
blockSeqs : C . ATATT . TTACT . G AT . CT . G . T T . T . A . T C C . . ATATATTATAAAA
blockSeqs : C . ATATT . . . . TC . CA . G . C A . . . A . G T A . . ATAGTAATGC
blockSeqs : C . TTG . . . . AC . CG . G . C T . . . A . C A A . . GATGTATGAT
blockSeqs : C . TTT . . . . AC . CG . A . T G . . . A . T C A . . ACAGAATAAT
blockSeqs : T . TTT . . . . AG . CC . A . T A . . . T . C C C . . ATATCATAT
blockSeqs : T . TAA . . . . AC . AT . A . T C . . . G . T C C . . TATATG
blockSeqs : A . TT . . . . AC . CA . A . T T . . . A . T T A . . AGAT
blockSeqs : T . GT . . . . AC . TC . A . G C . . . G . A . C . .
blockSeqs : A . TT . . . . AT . CT . A . T A . . . T . G . . . .
blockSeqs : G . TT . . . . GT . CT . A . A T . . . A
blockSeqs : C . TT . . . . AT . CC . G . T G . . . .
blockSeqs : C . TT . . . . AC . TC . G . . T . .
blockSeqs : C . TT . . . . . . TT . A . G .
blockSeqs : . TT . . . . . . C . . .
blockSeqs : . TT . . . . . . . .
blockSeqs : GT . . . .
blockSeqCons : ATATAATAT**************
originalCons : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTG---TTAA---CCGA-GACGAAGTCGAG-GTTGACAGTATTTT--TCCGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTTAT-TTTATT---------ATACCGAACAAAATA-TNTACTGCT--A-TAAT-AT-A------T-ATGA-T----TATATTA
finalCons : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTG---TTAA---CCGA-GACGAAGTCGAG-GTTGACAGTATTTT--TCCGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTTAT-TTTATT---------ATACCGAACAAAATA-TNTACTGCT--A-TAATATATAATAT--------------TATATTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATAGTATTTAACTGTCATATGTTGATAATATTGTTAACCGATGATTTATACCTGACGTATAGT
Unaligned ( gi|26 ): TTATGTGAAGTGTAGTAATAGAAGTGATTTATTGAAGTCATGTTG
Alignments
lowQualScore : 2222222 11111 1111111111
lowQualScore : 1 2 0 1111111 333 11111 0 2 666 333 444 77777 2 3 2 444 1 444 66 3 3333333333 3 1 4 1 55 3 666 3 8 4 5 5
lowQualScore : . . . ....... ... ..... . . ... ... ... ..... . . . ... . ... .. . .......... . . . . .. . ... . . . . .
lowQualScore : 5 4 7 8888888 999 11111 3 2 111 888 111 33333 4 7 7 111 9 777 88 1 4444444444 6 0 3 4 00 6 444 6 0 0 0 7
consensus : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTG---TTAA---CCGA-GACGAAGTCGAG-GTTGACAGTATTTT--TCCGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTTAT-TTTATT---------ATACCGAACAAAATA-TNTACTGCT--A-T---A-AT-ATA-TAAT-ATTAT-ATTA
Reference ( family-731 ) : GTATATAAATATTACATTCT-GTTGAGGGTGACAGTAATA-T-T--TGTCAACC---T-----GAGGGA-AT---TA-CTG---TTAA---CCGA-GACGAAGTCGAG-GTTGACAGTATTTT--TCCGAAGGTTGACAATATNACTGT---CACCCTCAACAGAATG--TAATATTTAT-TTTATT---------ATACCGAACAAAATA-TNTACTGCT--A-T---A-AT-ATA-TAAT-ATTAT-ATTA
gi|1 : TATCAATATTACATT----TTACATGTTACACTGAAA-T-T---GACAGCC---T-----GACGGA-AC---AA-TTG---TTAA---TCGG-AACTAATTTAAACATTGACAGTATATT--TCCGAAGGTTAACAATATAACTGT---CACTTTCAGCAGAATG--TTTTATTTAT-TCTATT---------ATACAGACCAAAATAGTGTAAT-CT--ATT---A-GTAATA-CGAT--TTAT-AT
gi|10 : -GTTGATGGTGACA---ATA-T-TGCTGTCAACT---T-----TCAGGA-AT---TA-TTA---TTAA---CTAA-GACAAAGTCGAG-AGTGACAGTATTT----------------AAT-----TGT---CACCCATAACAAAATG--AAATACCGGTACTTATT-----------------TAAAATA-TTTACTGCT--A-T---A-AT--TA-TAgaatcatgcatttacttg
gi|11 : TAGATTAATGTCACATTCT-GTTGAGGGTGACAGTAATA---T--TGTCTACC---T-----AGGGAA-ATCTGTT-CTA---TTAA---CAGA-AATGAAGTTATG-GTTGACAGCATATT--TCC-AAAGTTGATAATATTAtgtata
gi|12 : ATATTACATTCT-GTTGAGGGCAATAGTAGTAATAT--TGTTAACC---TTTACTG-GGAA-AT---T---TG---CCAA---CGAA-GACGAGGTTAAG-GTTGACAGTATTAC--TCTGAAGGTTGCCAGTAT
gi|13 : aaatttATATTACATTCT-GTTGAGGGCAACAGTAGTAATAT--TGTTAACC---TTTACTG-GGAA-AT---T---TG---CCAA---CGAA-GACGAGGTTAAG-GTTGACAGTATTAC--TCTGAAGGTTGCCAGTAT
gi|14 : aatttGACAATATTTCTAT---CATAGTCAACAGAATA--TA-TGTTTAT-TTCATC---------AAACCGAACCGAGTA-TTAACTGCTTCA-T---A-AT-TTA-TCTT-AGTATAATTA
gi|15 : tgaaGGAGGTTGAT--TGTAACTTTTCTCACCTTCGACAGAATG--TAATGCTTAT-TTTATT---------ATACTGAACAAAAAA-TGTATTGAT--A-T---A-AT-ATA-TCAT-ATTAT-ATTtatcaaa
gi|16 : tATTGTATTCT-GTTGAGGGTGACAGTTATA-G-T---GT---------------AGAGA-AT---CA-CTG---TTAA---CCGA-GATAATGTCAGC-GTTGGCAGTATCGT--TCTGAAGGTTGACAGTGTtag
gi|17 : TATATAAATATTACATGCT-GATGAGGGTGACGGTAGTA-T-T---GTCAACC---T-----GGGTGA-AT---TA-CTG---TCAA---ATGA-GATAAAGTAAAA-GTTAATAGTATTTat
gi|18 : TATATAAATGTTACATTTTTATCCAGAGTGACGGTAATG-T-T--GGTCAATCAACC-----GAGG------------------TAA---CAGA-GACAAAGTCGTG-GTTGACAGT-TTCT--T
gi|19 : TGAGGGTGAGAGGTATA-T-T---GTCAAGC---T-----GAGGTACATG--TAGTTT---TTAATCACCGA-AACAAAGTCGAA-GTAGACAATATTTT--ATCGAAGG
gi|2 : TATAAATATTACATTTT-TTTAAGGGTGACAGTAATA-T-T---GTCAACC---T-----GAGGGA-AT---TA-GTG---TTGA---TCAATCAC-AAGTCGAG-ATTGACAATATTTT--TTCATAGG-TGACAATGTTACTGT---TGTCCTCAACAGAATG--TAACATTTAT-TTCATTATCATATAAATACCAAACAAAACA-TC---------A-T---A-AT-ATAGTAAT-GCTAT-AT
gi|20 : GTATATAATTATTACATTAT-ATAGAGGGAGACAGTAATA---T--TGTCAACT---T-----GAATGA-AT---TA-CTG---TTGA---CTGC-GACAAAGTCacaatattaaatt
gi|21 : taGTTGAAAATATGTTTAT---CA---TCAGCAGAATG--TAATATTAAA-TTTATT---------ATACCGAGCAAATCA-TTTG-TGAT--A-T---A-Acaattta
gi|22 : ttatgatGAGAATTGATTATATAACTGT---CACTCTAAACATAATG--TAATATTTGT-TTTATC---------ATATCGAA
gi|24 : attgtcaaATTTT-GTAGAGGGCGACAGTGACA-T-T---GTCATCC---T-----GGTGGA-AT---TA-CTG---TTTA---CTGA-GAC
gi|25 : TAAATATAACATTAT-GTTGAGTGTGACAGTAATA---T--TGTCAATG---T-----GAGCCA-AT---TA-
gi|27 : AGGTTTACAATACCACTGT---CACCTTCAACAGAATA--TAATat
gi|3 : T-GTTGATGGTGACTGAGAT--T-T--TGTTATTA---T-----GAGAGA-AA---TA-CCG---TCAA---CCAA-GACAAAGAAGTG-ATTGACAGTGTTTG--CTTGAAGGCTGACAATATTACCGT---CGCCCTTTACAAAATA--CAATAATTGT-CTTATT---------TTACAAAACACTATA-TCTAA-GAT--A-T---AGAT-ATA-TTAT-AAAAT-ATggat
gi|4 : tcactatatcataactgaactaAGGTTTACAATATCACTGT---TACCCTCAACAGAATG--TGATATTTAT-TTCCTT---------GTATCAAACTAGGTA-TTTACTGCC--A-T---A----ATA-TAAT-ATatgcaga
gi|5 : ttaagcgccttagcgagaaacattattttaactgtcacatgtttagaaacccaatatagaaaatgacatatagcgtaaaataattccaaaattaatatatattgtatttcctGTATATAAATATTACATTGT-GTTGAGGGTGAAAGTAATA-T-T--TGCCAAAC---T-----GAGAGA-AT---TA-TTG---CCAG---TCAA-GACAAAGTCGAG-ATTTACAGTATTTT--TATGAAGGTTGACAATATAACTGT---CACCCTCAACAGAATA--TAATATTGAT-TTTATT---------ATACCAAACAAAATA-TTTACTGCC--A-T---A-ATGATG-TATG-ATTAT-ATTAgag
gi|6 : AATATTATTAT---CATCCTCAATATAATG--TCATATTTAT-GTTATC---------GTATCGAACTAAATA-TATACTTAT--A-T---A-AC-ACA-GAATAATTAA-AT
gi|7 : aacgctccattgtgcagcagtatttaaactgtcacgtgattagggaaataatttgtttccaatacagaaaataacatacagtttaacatcactttaagattcatGTTTATAAATACTACGTTCT-ACTGAGTGTGACTGTCATA-T-A--AG-CAACC---T-----GAGGGA-AG---TG-TCG---TTAA---TTGA-GACGAGGTCGAG-GTCGATAGT-TTTA--TCCGAA----CATAATATGAGTGT---CACCC---AGATAATGTTTTATATCTAT-TTTGTT---------TTACTGAAAGAAATA-TGTATTGCT--A-TTAGA-TT-ATA-TAAta
gi|8 : ATATTACATTCT-GTTCAGGGTGACATTGATA---T--TGTCGACT---T-----CAGGAA-AT---GA-TTG---TCAA---C------CGAAG-------------GTATTTTCCCCCGAAGATTGACACCATTACTGT---CACCCTCat
gi|9 : cgATTAATATGACATTCT-GTTGAGGGTGACAGTGATA-G-T---GTCATCT---T-----CAAGGA-AA---TA-CTACAATTAA------A-GACAAAGTTGAT-GTTGACAATATTTT--TCTAAAGGTTGACAATATGACTAT---CGCCCTCAACAT-ATGT-TTATATCTTT-TTCATT---------ATAcgctggcgcagttaacagtcaagtcacgcaattttattacactgttacccactggagcgga
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): AAATAGTATTTAACTGTCATATGTTGATAATATTGTTAACCGATGATTTATACCTGACGTATAGT
Unaligned ( gi|26 ): TTATGTGAAGTGTAGTAATAGAAGTGATTTATTGAAGTCATGTTG