lowQualScore : 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 44 666 1 55555555555555 11 1 11 1 3333 1 1 9999999999999999 11 11 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 1 1 3333 33 888888888888888888888888888888888888888888 1 66666666666666666666666666666666666666666666666666666666666666 11 1111 11 3333333 1 2222 1 1111111 1 1 3333 2222 1 33 99999999999999999999999999999999999999999999999999999999999 111 1111 444444444444444 1111 11 222 11 1 11 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 44444 1 1 4 1 2 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 222222 1 66666666666666666666 2222
lowQualScore : 22 66 6 333 5 6 6 6 66 33333333333333 99 6 7 55 5 6666 7 6 0 3333333333333333 88 4 33 4 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 444 2 3 4 2222 6 00 2 999999999999999999999999999999999999999999 4 0 2 6 3 6 88888888888888888888888888888888888888888888888888888888888888 22 2 2 77 7777 22 0 777 3 1 6 6 4444444 6 2 7777 1 44 0000 5 7777777 6 5 0 6 3 0 4444 7777 0 44 2 5 0 00000000000000000000000000000000000000000000000000000000000 6 3 6 77 0 777 6 3 3333 2 6 2 0 666666666666666 2 1 7777 5 0 6 66 6 000 33 6 3 3 44 6 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 5 22222 5 6 6 2 5 6 6 6 0 6 6 5 6 0 6 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 7777 22 888888 77 0 3 0 77777777777777777777 0 4444 3 2 2 2 8 2
lowQualScore : .. .. . ... . . . . .. .............. .. . . .. . .... . . . ................ .. . .. . ...................................................................................................................................................................................................... . ... . . . .... . .. . .......................................... . . . . . . .............................................................. .. . . .. .... .. . ... . . . . ....... . . .... . .. .... . ....... . . . . . . .... .... . .. . . . ........................................................... . . . .. . ... . . .... . . . . ............... . . .... . . . .. . ... .. . . . .. . ................................................................................................................ . . ..... . . . . . . . . . . . . . . . ......................................................................................................................................................................................... .... .. ...... .. . . . .................... . .... . . . . . .
lowQualScore : 00 00 0 000 0 0 0 0 55 55555555555555 00 0 0 55 0 0000 0 0 5 5555555555555555 55 0 00 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 777 0 3 0 5555 0 55 5 222222222222222222222222222222222222222222 0 5 5 7 7 7 99999999999999999999999999999999999999999999999999999999999999 55 0 0 55 2222 22 2 555 7 0 7 0 7777777 7 0 0000 0 33 3333 0 3333333 3 0 7 8 0 8 9999 0000 0 22 0 0 2 55555555555555555555555555555555555555555555555555555555555 5 5 0 55 2 888 0 0 0000 5 0 2 7 333333333333333 2 4 0000 0 2 7 00 0 333 77 0 3 7 33 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 00000 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222 55 222222 55 0 2 2 55555555555555555555 8 5555 0 2 5 5 8 5
consensus : NAATCATATTCAATAAAAATGCTTTAAACTGCTTGGTTTGTCANNTTCANNNATCTACTGATCGTNCTCCACTTACTCACNNATACACCCAATTATAGACCNCTTTTCAATAACGTG-TGTGATTTNCGAAGGNCGCCNNCNGCCCATNACCTANTTTNGTGAACCTCATGAAACAAAAATCACTGCTGNCGACCGTNNNTGTACTGATGANNACGGACATNACGCGC-------ACGTGGTA-GC-GTT----TCGTA--CT--GG-TT-A---GCTG--TTAAAA---CGGC--AAAGAA----CAACNT----CATTTACGTT---ATGGGA-----------CGCTCGACGTTACGAAGCCGTCGGT-ATGGTNGCCTGNTGAAATAGTNATATGATGAGGTTAGGTCGCGCNCAGNGCGCAC--TTC--TC----CACTATCATGCGGTTAGTNAGGNGACACCAAGAAACCGGCTCT-CTG----CTGAC-GTC-ACG---TCC-ANGACG---C-CAA-AGTATGACGTC-----C--CGTCAGCAAGACCGTCATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAG-CAACACGGACTGCCCGGGAAGCAAGGGNATACAACCAGCAACGCATT--AGTCGATCAACCGTACGCCGACGNTTGTTGGCTGCAGGAATTNAAGNNCATGATCCGTATAGGGGTAACGTATTGACANCAGAGAGGCGNCGTAAC-GTGAGTG---GTGTCGTC-GACATCTACGATGGACACAAGATCAGTGGGAAGGCGTTGTATTCGCTGATGAATN-A-GTTTTGNATAGACGTGCACGAT----GAAGGCGTAAAGTATGGCGTCGCAGAGGTGAGCGNTACGTTGATTGCTGCGCNAGACAGCACGCACGATG--G--GGA-GT-GGTAGTGTGATGGT----GGTGGAAGGACGTCTGACAGCTCAGNGATACANCGATGAAAT-CTTNGAACCGCGCGTTGTGCCCT-TC----GAA-CG-CATGACG-TC-ACGT----TGTTTCGAC-AAGATAATATCAGACCGNCGGATTCTGAGNCNGAATAACGTTCAAGCTACT---GCTCTGGTCGAGCANTTATGGGACCAGCTTTGTCGTCAGGTGTGCAGCGGGCGTCACGTNACAAACAGCGAGGCATAGTTGGTGCAGNNNNNNNTAAACGAGCGGGATGCCGTCCCACAATGCAGGACTACAGCGTCTCATCCGCAGTATAACACGCTGAGGC-------C------------G---AC-GCAAACGGCGGC--CACATACGGTACTGA--TTTG-TGAACTTT-AGTTNAAC--TTCGACATT-AAGGCAATAAAATTC-----CACAAA---NA--TNACA-T-T-CAT--TT------GCTTCTATTGAGGTA-TCGTTA-AAATCTCTGAAC-ACT-----ATTTNNT-TTCAGTTTTGACATC-AAAAAGT-ATAGCAGTA-CTAAAAATATAATGANTGTATTTNATGGTGCGTTTTCATTGACCGCCANTATA
Reference ( gi|1 ) : CAACTATAC-CAATGAAAATGCAC-AAAATGTTTGGCTTATTAGTTTCAGTTACCCATT--TCGTTATTTACTTTTTTACATATAAACAAACTTATTGATCGCTTTTCAATGACATGACGTGATTTGAGAAGGACATCCGCTGCCCATG--CAAAT--CGT----T--AT----T--------TTGCTGACAATCCTTTTTAT--T-ATGAAC-CAGATA-AATGTAC-------ACGTGGTG-G--ATT----TCATAA-CT-GAGCTTTA--TATTA--TTAAAATTTCGAC-AAAAGAA--TTCAACTT----CATTTACGTT---ATAGGA-----------CGCCCAACGTCATGAAGCCGTCAGT-ATGGTAGCC-GG-GAGATAGTCATAT-AT--CGTT--GTTGCACACAGTATGCATTGTTC--TC----CACTATCATGCAGTTAGTTAGGCGACACCAAGCAACCGGCTCTCTTG----CTGATAGTCCACG---TCC-AGGACG---C-CAA-AGTATGACATC-----T--CGTCAGCAAGACCACCACACTGTCCTTACGCACCTCCGAGATCGCTTTCAGACAA-CAACACGGACTGCCCAGGAAGCAAGGGGATATAAGCAGTAACGCATA--AATAGCTCCACCATGCGTCGACGCCTGTAAGATGCAGGCATTTCAGCCTATGTTCCATATCGGGGTAACGTATTGACATCAGAGAGGCGACGTAATACTGAGTT---GTGTCGTC-GG-ATCTACGATGGACGCAAAATCAGTGGAAAGGTGTTCTTTTCACTGACGAGTTCAGGTTTTGTATAGATATTCTGGATT---GGGGGCGTAAGGTGTGGCGTCTCCGAGGCGAGCGTTACGCAGATTGCTGCGTCAAACAGCATGCACGGTG--G--GGA-GT-GGCAGTGTAATGGT----GATGGCAGGTAGTCTGACGGCTCGAAGATACGTTGACGAAAT-CTTGGAACCATGTATTATACCCTTTCTTCCAAATCACCATGTCG-TC-ACGC----AATTTCAGC-AGGACAACGCTGGGCCACT---TTC--AGCCAGAATAACGT--AAG--ACCTGAGCCCTA-TTGAGCATTTATGGCACCAGC-TCGGCGGCGAGTGTACAATGGACGTCACGTCATCAACAACAAGGCACAGTTAGTGCAGACACTGTTAGAC-AGTGGGATGCCATGCCACAATACAGGATT-CAGCGTCTCATCCACAGTAT--------GAGGC-------C------------G---AC-GCAAACGGCGGC--CAC-T-CGCTACTGAGGTTTG-TGAACTTTCAGTTTCACCCTCTTTCATTT-AGGCATTAAAATTCA---GCTCAAATGCAA--TAACA-T-C-CAT--TT------GCTTTTAATGAAATA-TTGTTGTAAGTCCCTGAAC-ATT-----ATTTAAT-TTCAGTTTTGACATCCAAAAAGA-AGAGCAG-A-CTAAAAATAGAATAAGTATATTTCATGGTGCGTTTTCATTGACCGCCAGTATAAATATAAGACTCCTAAACAGACGTTTG
gi|2 : AATCATATTCAATAAAAATGCTTTAAACTGCTTGGTTTGTCACTTT--ATTATC-ACTGATCGTTCTTCATTTATTCACGAATACACCCAATTATAGACCATTTTTCAATAACAT--TGTG-TTTTCGAAGGACGCCACCTGCCCATGACCTAGTTTCGTGAACC--AT----CAAAAATCATTGCTGACGATCATGCATGT--T-ATGACC-CAGACA-CATGCCA-------ACGTTGCA-GC-ATT----T--TAATCT-CGGATTAA--AGCTG--TTAAAA---CGCCTAGAAGAAACTTGCACAT----TATTTACGTT---ATGGGAAAATTTGATGCCGTTCAACGTTATTAAGCCGTCGGT-GTGGTTGCC-GGTGAAATA-TAATATGATGAGGTT--G-CGCACACAATGCGTAT-------------CACTATCATGCCGTTAGTCAAGAGACAACTGGAAACTGGCTCT-----------ATGGTCGACC---TCC---CATC---C-CAG-AA-ATGGAGTCGTGAAC--CATCAATAAGACCGGCATATTATCCTTACGCAACTCAGAGATTGCTTTCAAACAG-CAACATGAAAT---CGGAAAGCAAGGGTAAACAAGCAGCAACGCATT--AGTCGATCAGTTGTACGCCGAAACTTTTTGGCTGCAGGAATT
gi|4 : acattaatatgtatTAGATTCACGAATCTATT--TCGTACTCCACTTACTTACTTATACACCCAATTATAGACCCCTTTT-------GTG----GATTTGTGAAGGTCATCCACAACCCATT--CTATT--AGT----TTCATGAAAT--------CTG-TGCGAACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGTGTG--GTA----GCAT----------TTCAATTATTGGCTTAAGGCTTTGG---AAAGA-----CA--TT----C-TTTACGTA---ATTGGA-----------CGCTTGAC--TATGCAGTCGTCATT-ATGGTAGCCTGT-GAAAT-GTCATAT-A----ATTAGGTTGCGCTTAGAATGCAC--TTCATTC----CACAATCATGTAgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|7 : ttcATGTGC-------ACGTGGTA-GTAATTAAATTCGTAT-CTTGAG--------GCTG--TTAAAA----GGC-CAA-GAA----CAACCTTGCACAGGGACGTTTGAATGG-------------CGCCCAACGTAACGAAG-CGTCAGTGATG
gi|5 : ttgatacatttgtgtgaaatgaaaatgccccaaactgactttatattattttcaccaatcaagagcgttctttatttacttgtacgtccatttcaccttgcgtgaatatgtgaatgatgaattcctttgatctagtttcgtgaacctcgtgcaaatcgttaacacgctgccTGTTC--TCACTTCACTACCATGCGATTAGTGAGACGACACCAAGAAACCGGCTCTGCTG----CTGATTGTCCACG---TCA-AGGACG---C-CAA--TTGTGACGTC-----T--CGTCAACAAGACCGTCATATTGTCCTTACGCACCCCCGAGA-----------CAG-CAACACGGACTGACCAGGAAGCAAGGGGATGTAACCAGCAACGCATT--AGCCGCTCTACCGAACGCCGACGTCAGTTAGATGCCGGAATTTCAGCCCATTATCCATATAGGGGTAACGTATTGACACCAGAGAGGCGACGTAACAGTGAGTTGTGGTGTCGTCTGC-CTCAACGATGGactattatcatgaagttgc
gi|12 : GAAACCAAGCAATAGG-TCTTTTGAGTGCTGGC-GTC-ACGAAATCCGACGTCG---CACAACAGTTTAAC-TG-----TAGTGTCAGCAGGATGCTTACATTAGACTCTCGCACCTCCGGAATCGCTTAC-GACAAGCAACAACAACGGCCCGG
gi|3 : CG---CTC-AAGACGATGT-CAA-AGAATGATGTC-----C--CGACAGCAATACCGCCATTCTGTCCTTACGCACTTCCGAAATTGCTTTTAAAGAG-CAACACGGACTGCGTAGGAAACAAAGGAATACAACCTGCAACGCACATCAGTCGATCAACTGTGCGTTAACGATTGTTGACTTCAAGAATTGAAGAGCATGGTCCGTACAGGGGTAATTTATTGACCGCAGAGAAGCGCCGCAA
gi|9 : TGCAGGAATTAATGTTCATGATCTATATAGGGGTCATGTGTTGACATCAGAGAGACGCCGTAACTGTGAGTA---ATGATGTC-GACATCTGCGATGGATACAAGACCAATAG---GATGTTGTACCCATTGATGAGTGCAAG----GAATA---------------------CGAAAAGTATAGCGTCGTAGAGGTGAGCGTTAATTTGAGTGCTCCGCCAGACAGCACGCACGgatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|2 : tcagattgataaactgtgtggcgttgacATTGACAGCGGAGAGGTGATGGA----TGCATG---GTGTCGTT-GACATTTACGATGGACACATTATCAGTGGAAAGGTATTTTATTCACT-------------TTTGTACAGACATGTACGATG---GAAGGTGTAAAGTATGGCGTCGCAAAGATAAACGGTATGTTGATTGGTGCGCAAGACAGCACGCACGATG--A--ACA-GTGGGTAGTGTTATTGTTCGGGATGG
gi|10 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaGTG---GTGTCGTC-GGCATCTAAGATGAACACAAAATCATTG----------------------GAATT---GTTTTGTTTAGATGTGC---ATCCAAGAAGGCGTAAAGTGTGGCATCGCCGAGGTGAGCGTTACGTAGATTGCTGCGTCAGACAGCATGCACGGTG--G--GGACGG-GGTTGTGTAATGGT----GTGGGCCGGTAtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|3 : gtaaccgtcagttCGCAAGATCAGTGGGAAAGCGTGGTATTCGCTGATTAATCAATGTTTTGAATAGACATACACGAT-------GG---AAAG-----CATCGCAGAGGTGGACGGTTTGCTGATTGCTGCGTAAGACAGCACTCACGATGTTGACGGA-GT----AGTGTAATGGT----Gtaccactgcaccacagaacacacctggtagtggttgcaggcagtctga
gi|2 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgcTGATAGT----AGTAGAAGGACGTCTGACAGCTCAGGAATAAAGCGATGAAAT-CTTTGAACCGCGCATTGTGC-----------AA-CA--ATATAGATCTACGCCCCCA--TTCGGCCAGAATAATATC---CTAGT---TTCTGAGACAGAATAACGTTCAAGCTACT---GCTCTGGTCGAACATTTATGGGACCAGCTTTGTCGTCAGATGTGCAGCGGGCGTCACGTGACAAATAGCGAGGtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|3 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatcccTGATAGC----GGTTGAAGGATGTCTAACAGCTCAGAGATACAATGATGGAAT-CTTGGAATCATGATTTGTGTCCTGTC----GAA--GACGTGACG-CC-ACGT----TGTTTCAAC-CAGATAACATCAGATCGTCGGATTC--AGCCTGAATAACAT----------------CTA----AGCAATTATGGAACCAGagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|15 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgccgcaagatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacaccccTGACAGGTCATTGATACATTAATGAAATTCTTAGAACCATGCGCTGTGCCCTTTCTGAGAAACCACTATGACA-TC-ACAT----TGTTTCAAC-AAGACAATGCT
gi|16 : CAAGTGTACAACGGACGTCACGTCATAAACAACAAGGCATAGTTGGTGCAG
gi|6 : TAAACGAGCGGGATGCCGTCCCACAATGCAGGACT-CAGCGTCTCATCCGCAGTAT--------GAGGCGTATTTGCCAGTCTGTAGTAG---AC-GCAAACGGCGGCCACAC-T-TGTTACTGA-GTTTGCTGAAC--TCAGTTCAA---------AT-----GCA-TAAAATCCATTTGCTC---TTTCA--TGAAA-T----AT--TT------G---------------TTGTT---AGTACCTGAGC-ATT-----ATTTTAT-TTCAGTTTTGACATCCAAAAAGT-AGAGCAG-T-CTAAAAATATAATAAGTATATTACATGGTGCGTTTTCATTGACCGCCAGTATA
gi|8 : GATTACAACGTCTTATTCGTAGTATAACACGCTGATAC-------T------------G---ACTGCAAACGGTGGT--CACATACGGCACTTA--TTTG-TGAACTTTGATTTTAACCGTTCGACATTGAAGGCAATAAAATTC-----CATAAAAAAGA--TCACATT-T-CAT--TT------GTTTCT--T---ATA-TTG--GTCATTCTTTAAACTACTCTTAAACTTATT-TTCAATTGTGACAT---ATAAGATATAGCAGTATCGAAAAAT--AATGATTGCATTTCATGGTGC-TTCTCTTTGGCTGTCATTATActgactttcaatttcataaaaaagggacgtg
gi|2 : ctGGC-------C------------GTGAAC-GCAAATGGCGGC--TACATACGGTACTGA--TTTG-TGAACTTT-GGATACACGCTTCAACATTTAAGGCAATGAAATTC-----CACAAA---AATCTCACA-TAT-CATTGTT------TCTTCTATTGAGGTT-TCGTTAAAAAGCTCTGAA--ACT------TTCATT-TTTTGTTT----ATT-----------------G-CTATAA------TGAGTGTATGTAATGGTACGTTTTCACTGACCG
gi|11 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacAATA-T-CACAT--TTCGACATGCTTCTATTGAA-TAGTCGTTA-AAACTTTTAAAC-ATT-----ATTTCATGTTTAATTTTGATAT-GAAAAAGT-ATAGCAGTA-TCAAATATATACTGATTATTTTTGATGATGTTTTTATATTGACttt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TTTTTTTTTCAACGATCTATTTCATACTCCACTTACTTACTAATACACCCAATTATAGACTCTTGCGTGATATTGTGAAGGGCATCCACTACCCATTTTCTAGATTCACGAATCTATT
Unaligned ( gi|14 ): TGACAGCAAGCACAATGGGGGAAGGGCCTGAGTCATGGTGTGTGTTGGTGGTGTATTTTGGCAGCACAAAACACCCCTGATAGTGGTTGAAGGAGGCCTG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1 3333 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222 111 44444444444 1 333 11 44444444444 33333333 1 2222222 1 2 2 111 111 1111 222222 11 111111 2222 111 1111 5555555555555555 2222222 2222 1 8888888888888888888888 1 1 11 1 444444444 11 7777777777777777777777 1 1 1 7777777777777777777777777777777 111 1 22 1 22 6666666666666666666 555555555555555555555555555555 11 111 11 222222222222 11111111 1111 2222 1111
lowQualScore : 5 1 888 3 6 0 0 22 333 9 0000 1 6 2 22 1 0 1 8 1 0 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 1 1111 777 0 2 77777777777 2 2 1 2 6 2 0 1 222 44 1 66666666666 0 0 1 222 55555555 0 3 1 1 3 0 0 8888888 0 0 0 777 222 1 8 3333 8 111111 1 22 1 0 1 2 33 1 3 3 1 000000 444 0 1 1 0 8888 111 1 1 4 1 3 1 3333 11 9999999999999999 44 1 0000000 5 1 22 0 1 1 1 1 00 3333 2 3 0 3 11 33 0 1 44 44 2 5555555555555555555555 0 22 0 11 33 2 3 0 444444444 44 1 1 6666666666666666666666 1 3 5 3 3 0 0 0 0 1 0 0 0 7777777 5 2 0 5 8888888888888888888888888888888 0 777 0 3 9 2 33 0 33 44 6666666666666666666 9 222222222222222222222222222222 11 0 444 11 222222222222 55555555 6666 22 8 0 1 0 6666 0 0 4444 1 0 1 1 5 1
lowQualScore : . . ... . . . . .. ... . .... . . . .. . . . . . . ........................................................................................................................................................................................................................ . . .... ... . . ........... . . . . . . . . ... .. . ........... . . . ... ........ . . . . . . . ....... . . . ... ... . . .... . ...... . .. . . . . .. . . . . ...... ... . . . . .... ... . . . . . . .... .. ................ .. . ....... . . .. . . . . . .. .... . . . . .. .. . . .. .. . ...................... . .. . .. .. . . . ......... .. . . ...................... . . . . . . . . . . . . . ....... . . . . ............................... . ... . . . . .. . .. .. ................... . .............................. .. . ... .. ............ ........ .... .. . . . . .... . . .... . . . . . .
lowQualScore : 5 0 000 3 7 7 7 00 000 0 8888 0 4 8 00 0 8 0 2 0 8 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 0 2222 555 2 5 55555555555 0 5 2 0 5 0 0 0 333 00 0 77777777777 7 7 0 333 33333333 2 7 0 0 0 2 0 8888888 0 0 0 555 666 0 0 0000 0 444444 8 22 0 6 0 5 88 2 0 5 0 222222 888 8 0 0 8 6666 777 0 0 8 4 2 4 4444 88 6666666666666666 88 4 8888888 0 0 66 6 0 4 4 0 55 0000 2 2 2 7 22 00 0 0 00 55 5 8888888888888888888888 0 88 0 55 88 0 0 0 777777777 00 0 0 7777777777777777777777 0 7 5 0 0 7 7 7 7 0 7 7 7 0000000 0 5 7 5 0000000000000000000000000000000 2 555 0 2 8 5 88 0 22 00 2222222222222222222 8 000000000000000000000000000000 00 8 000 00 444444444444 22222222 0000 00 0 8 4 8 0000 6 8 4444 0 8 0 0 0 0
consensus : NAACCATACTCAATGAAAATGCNCCAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTC---AATAACGTG-CGTGAT-TTGTGAAGGACGTCNNCCGCCCATNATCTAGTTTCGTGAACCTCATG-AACAAA--TCGTT-----GCTGACGATCGTTNTTAT--T-ATGAAC-CGGATA-AATGCGC----AC--------GTGGTAGCA--T---TTCG--TAA-CT--GG---TTAAGG-CTGTTAAAA---CGGC--AAA-GAA-C---CAACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATGAT---GTTG-GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCCATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNAAGCCCATGATCCGTATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGGAAGGTGTTGTATTCACTGACGAAT------GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGN-GGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--CA-C-AT-GACGTC-ACGCCGT--TTCAGCNAGA-CAACGTCGGGCC-CCGGATTCT-AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGAG-TTTG-TGAACTTT-AGTTTNAC---C--TTCGACA-TT-AAGGCAATAAAATTC--CAC---AAA---AA--TCACA-T-TC--AT--TTGCTTC---TAT--TGAAATA-TC----GTT-A-AAAT-CTCTGAACATTATTTNAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
Reference ( family-710 ) : NAATCATATTCAATAAAAATGCTTTAAACTG-CTTGGTTTGTCANNTTCANNNATCTACTGATCGTNCTCCACTTACTCACNNATACACCCAATTATAGACCNCTTTTC---AATAACGTG-TGTGAT-TTNCGAAGGNCGCCNNCNGCCCATNACCTANTTTNGTGAACCTCATGAAACAAAAATCACT-----GCTGNCGACCGTNNNTGTACTGATGANNACGGACATNACGCGC----AC--------GTGGTAGCG--T---TTCG--TA--CT--GG---TTA--G-CTGTTAAAA---CGGC--AAA-GAA-----CAACNT----CATTTACGTT---ATGGGA-----------CGCTCGACGTTACGAAGCCGTCGGT-ATGGTNGCCTGNTGAAATAGTNATATGATGAGGTTAGGTCGCGCNCAGNGCGCACT--TC--TCCACTATCATGCGGTTAGTNAGGNGACACCAAGAAACCGG-CTCT-C---T-GCT-GAC-GTC-ACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGTCATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGNATACAACCAGCAACG--CATTAGTCGATCAACCGTACGCCGACGNTTGTTGGCTGCAGGAATTNAAGNNCATGATCCGTATAGGGGTAACGTATTGACANCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGACATCTACGATGGACACAAGATCAGTGGGAAGGCGTTGTATTCGCTGATGAAT--NA--GTTTTGNATAGACGTGCA-CGA-T-GAAGGCGTAAAGTATGGCGTCGCAGAGGTGAGCGNTACGTTGATTGCTGCGCNAGACAGCACGCACGATGGGGA-GT-GGTAGTGTGATGGTGGTGGAAGGACGTCTGACAGCTCAGNGATACANCGATGAAAT-CTTNGAACCGCGCGTTGTGCCCT-T-----C----GAA--CG-C-AT-GACGTC-ACGTTGT--TTCGACAAGA-TAATATCAGACCGNCGGATTCTGAGNCNGAATAACGTTCAAGCTACT---GCTCTGGTCGAGCANTTATGGGACCAGCTTTGTCGTCAGGTGTGCAGCGGGCGTCACGTNACAAACAGCGAGGCATAGTTGGTGCAGNNNNNNNTAAACGAGCGGGATGCCGTCCCACAATGCAGGACTACAGCGTCTCATCCGCAGTATAACACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGGTACTGA--TTTG-TGAACTTT-AGTTNAA----C--TTCGACA-TT-AAGGCAATAAAATTC--CAC---AAA---NA--TNACA-T-TC--AT--TTGCTTC---TAT--TGAGGTA-TC----GTT-A-AAAT-CTCTGAACACTATTTNNT-TTCAGTTTTGACAT-CAAAAAGTATAGCAGTACTAAAAATATAATGANTGTATTTNATGGTGCGTTTTCATTGACCGCCANTATA
gi|1 : AACTATAC-CAATGAAAATGCAC-AAAATG-TTTGGCTTATTAGTTTCAGTTACCCATT--TCGTTATTTACTTTTTTACATATAAACAAACTTATTGATCGCTTTTC---AATGACATGACGTGAT-TTGAGAAGGAC---ATCCGC----------------TG---CCCATG---CAAA--TCGTTATTTTGCTGACAATCCTTTTTAT--T-ATGAAC-CAGATA-AATGTAC----AC--------GTGGTGG-A--T---TTCA--TAA-CT--GAGCTTTAT-A-TTATTAAAATTTCGAC--AAAAGAATT---CAACTT----CATTTACGTT---ATAGGA-----------CGCCCAACGTCATGAAGCCGTCAGT-ATGGTAGCCGG--GAGATAGTCATAT-ATC--GTT--GTTGCACACAGTATGCATTGTTC--TCCACTATCATGCAGTTAGTTAGGCGACACCAAGCAACCGG-CTCT-C---TTGCT-GATAGTCCACG---TCC-AGGACGC-CAA-AGTATGAC-ATC-----TCGTCAGCAAGACCACCACACTGTCCTTACGCACCTCCGAGATCGCTTTCAGACAACAACACGGACTGCCCAGGAAGCAAGGGGATATAAGCAGTAACG--CATAAATAGCTCCACCATGCGTCGACGCCTGTAAGATGCAGGCATTTCAGCCTATGTTCCATATCGGGGTAACGTATTGACATCAGAGAGGCGACGTAAT-ACTGA---GTTGTGTCGTCGG-ATCTACGATGGACGCAAAATCAGTGGAAAGGTGTTCTTTTCACTGACGAGTTCAG--GTTTTGTATAGATATTCT-GGATT-GGGGGCGTAAGGTGTGGCGTCTCCGAGGCGAGCGTTACGCAGATTGCTGCGTCAAACAGCATGCACGGTGGGGA-GT-GGCAGTGTAATGGTGATGGCAGGTAGTCTGACGGCTCGAAGATACGTTGACGAAAT-CTTGGAACCATGTATTATACCCT-TTCTTCC----AAAT-CACC-AT-GTCGTC-ACGCAAT--TTCAGCAGGA-CAACGCTGGGCC-----ACTTTCAGCCAGAATAACGT--AAG--ACCTGAGCCCT-ATTGAGCATTTATGGCACCAGC-TCGGCGGCGAGTGTACAATGGACGTCACGTCATCAACAACAAGGCACAGTTAGTGCAGACACTGTTAGAC-AGTGGGATGCCATGCCACAATACAGGATT-CAGCGTCTCATCCACAGTA------------------------TGA---GGCCG---AC-GCAAACGGCGGCCAC-T-CGCTACTGAGGTTTG-TGAACTTTCAGTTTCACCCTC--TTT--CA-TT-TAGGCATTAAAATTCAGCTC---AAATGCAA--TAACA-T-CC--AT--TTGCTTT---TAA--TGAAATA-TT----GTT-GTAAGT-CCCTGAACATTATTTAAT-TTCAGTTTTGACATCCAAAAAGAAGAGCAG-ACTAAAAATAGAATAAGTATATTTCATGGTGCGTTTTCATTGACCGCCAGTATA
gi|10 : c---GTGGTGTCGTCGGCATCTAAGATGAACACAAAATCA-----------TTG-----------GAAT--T---GTTTTGTTTAGATGTGCATCCA-A-GAAGGCGTAAAGTGTGGCATCGCCGAGGTGAGCGTTACGTAGATTGCTGCGTCAGACAGCATGCACGGTGGGGACGG-GGTTGTGTAATGGT-GTGGaatataagactcctaaacagacgtttg
gi|11 : gtaaccgtcagtt---AAA---TA--TCACA-T-TTCGAC--ATGCTTC---TAT--TGAA-TAGTC----GTT-A-AAAC-TTTTAAACATTATTTCATGTTTAATTTTGATAT-GAAAAAGTATAGCAGTATCAAATATATACTGATTATTTTTGATGATGTTTTTATATTGACAGTCGTTACAgccggtataccactgcaccacagaacacacctggtagtggttgcaggcagtctga
gi|12 : GAAACCAAGCAATAGGTCTTT-TGAGT-GCT-GGC-GTC-ACGAAATCCGACGTCGCACAACAGTTTAACTGTA-----GTGTCAGCAGGATGCTTACATTAGACTCTCGCACCTCCGGAATCGCTTACGACAAGCAACAACAACGGCCCGGtg
gi|13 : TTCAACGATCTATT--TCATACTCCACTTACTTACTAATACACCCAATTATAGA-CTCT--------------TG-CGTGATATTGTGAAGGGCATCCACTACCCATTTTCTAGATTCACGAATCT
gi|15 : tttttttTGACAGGTCATTGATACATTAATGAAATTCTTAGAACCATGCGCTGTGCCCT-T-----TCTGAGAAACCA-CTAT-GACATC-ACATTGT--TTCAACAAGA-CAATatt
gi|16 : CAAGTGTACAACGGACGTCACGTCATAAACAACAAGGCATAGTTGGTGCAGgct
gi|2 : AATCATATTCAATAAAAATGCTTTAAACTG-CTTGGTTTGTCACTTT--ATTATC-ACTGATCGTTCTTCATTTATTCACGAATACACCCAATTATAGACCATTTTTC---AATAACAT--TGTG-T-TTTCGAAGGACGCCACCTGCCCATGACCTAGTTTCGTGAACC--AT----CAAAAATCATT-----GCTGACGATCATGCATGT--T-ATGACC-CAGACA-CATGCCA----AC--------GTTGCAGCA--T---TT----TAATCTCGGA---TTAAAG-CTGTTAAAA---CGCCTAGAA-GAAACTTGCA-CAT----TATTTACGTT---ATGGGAAAATTTGATGCCGTTCAACGTTATTAAGCCGTCGGT-GTGGTTGCC-GGTGAAATA-TAATATGATGAGGTTG---CGCACACAATGCGTAT---------CACTATCATGCCGTTAGTCAAGAGACAACTGGAAACTGG-CTCT-A---T-GGTCGAC-CTC-CCA---TCC---------CAG-AA-ATGGA-GTCGTGAACCATCAATAAGACCGGCATATTATCCTTACGCAACTCAGAGATTGCTTTCAAACAGCAACATGAAAT---CGGAAAGCAAGGGTAAACAAGCAGCAACG--CATTAGTCGATCAGTTGTACGCCGAAACTTTTTGGCTGCAGGAATTGA----CA------GCGGAGAGGTGATGGAT--GCAT------GGTGTCGT------TGA----------------CATTTACGATGGACACATTATCAGTGGAAAGGTATTTTATTCAC---------------TTTTGTACAGACATGTA-CGA-TGGAAGGTGTAAAGTATGGCGTCGCAAAGATAAACGGTATGTTGATTGGTGCGCAAGACAGCACGCACGATGAACA-GTGGGTAGTGTTATTGT
gi|2 : acattaatatgtatTGATAGTAGTAGAAGGACGTCTGACAGCTCAGGAATAAAGCGATGAAAT-CTTTGAACCGCGCATTGTGC----------------AA--CAAT-ATAGA--TCTACGCCCCCATTCGGCCAGAATAATATC------CTAGTTTCTGAGACAGAATAACGTTCAAGCTACT---GCTCTGGTCGAACATTTATGGGACCAGCTTTGTCGTCAGATGTGCAGCGGGCGTCACGTGACAAATAGCGAGGtcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|2 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatcccACAGCTTCTTAATTGCTATATGAGACG-----------CATATTTCAAACGGCCGTGAAC-GCAAATGGCGGCTACATACGGTACTGA--TTTG-TGAACTTT-GGATACACG--C--TTCAACATTT-AAGGCAATGAAATTC--CAC---AAA---AATCTCACA-TATC--ATTGTTTCTTC---TAT--TGAGGTT-TC----GTTAA-AAAG-CTCTGAA-AC--TTTCAT-T----TTTTG---T-T------TATTGC-----------TATAATGAGTGTATGTAATGGTACGTTTTCACTGACCGagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|3 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaag-ACGATGT-CAA-AGAATGAT-GTC-----CCGACAGCAATACCGCCATTCTGTCCTTACGCACTTCCGAAATTGCTTTTAAAGAGCAACACGGACTGCGTAGGAAACAAAGGAATACAACCTGCAACGCACATCAGTCGATCAACTGTGCGTTAACGATTGTTGACTTCAAGAATTGAAGAGCATGGTCCGTACAGGGGTAATTTATTGACCGCAGAGAAGCGCCGCAAG-A-TCA---GTGGttt
gi|3 : cgctcaagCGCAAGATCAGTGGGAAAGCGTGGTATTCGCTGATTAAT--CAATGTTTTGAATAGACATACA-CGA-T-GGA------AAG-----CATCGCAGAGGTGGACGGTTTGCTGATTGCTGCGTAAGACAGCACTCACGATGTTGACGG-AGTAGTGTAATGGTGgaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|3 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgcTGATAGCGGTTGAAGGATGTCTAACAGCTCAGAGATACAATGATGGAAT-CTTGGAATCATGATTTGTGTCCTGT-----C----GAA--GA-C-GT-GACGCC-ACGTTGT--TTCAACCAGA-TAACATCAGATCGTCGGATTC--AGCCTGAATAACAT-----CTA---------------AGCAATTATGGAACCAGtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|4 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgccgcaagatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacaccccAGATTCACGAATCTATT--TCGTACTCCACTTACTTACTTATACACCCAATTATAGACCCCTTTT----------GTG----GAT-TTGTGAAGGTCATCCACAACCCATT--CTA--TTAGT----TTCATGAAAT--------CT-----G-TGCGAACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGTGTGGTAGCA--T---TTCAATTA--TT--GGC--TTAAGG-CT-TT--------GG---AAA-G---------ACAT----TCTTTACGTA---ATTGGA-----------CGCTTGAC--TATGCAGTCGTCATT-ATGGTAGCCTG-TGAAAT-GTCATATAA-----TTAGGTTGCGCTTAGAATGCACT--TCATTCCACAATCATG
gi|5 : ttctC--TTCACTACCATGCGATTAGTGAGACGACACCAAGAAACCGG-CTCTGC---T-GCT-GATTGTCCACG---TCA-AGGACGC-CAA--TTGTGAC-GTC-----TCGTCAACAAGACCGTCATATTGTCCTTACGCACCCCCGAGA-----------CAGCAACACGGACTGACCAGGAAGCAAGGGGATGTAACCAGCAACG--CATTAGCCGCTCTACCGAACGCCGACGTCAGTTAGATGCCGGAATTTCAGCCCATTATCCATATAGGGGTAACGTATTGACACCAGAGAGGCGACGTAACAG-TGAGTTGTGGTGTCGTCTGCCTCAACGATGGta
gi|6 : tgttctcaTAAACGAGCGGGATGCCGTCCCACAATGCAGGACT-CAGCGTCTCATCCGCAGTATGAGGCGTATTTGCCAGTC-----TGT---AGTAG---AC-GCAAACGGCGGCCACACTTGTTACTGAG-TTTGCTGAACTC--AGTTCAA-------------A-T-----GCA-TAAAATCC------------------------------AT--TTGCT-C---TTTCATGAAATA-TTTGTTGTT-A-G--T-ACCTGAGCATTATTTTAT-TTCAGTTTTGACATCCAAAAAGTAGAGCAGT-CTAAAAATATAATAAGTATATTACATGGTGCGTTTTCATTGACCGCCAGTATA
gi|7 : AATGAAAATGCCCCAAACTGACTT--TATATTATTTTCACCAATCAA--GAGCGTTCT----TTATTTACTTGTACGTCCATTT------CACCTTGCGTGAATA------TGTGAA-TGATGAA----------TTCCTTTGATCTAGTTTCGTGAACCTCGTGCAActgactttcaatttcataaaaaagggacgtg
gi|7 : ttgatacatttgtgtgaATGTGC----AC--------GTGGTAGTAATTAAATTCG--TAT-CT--TG-----A--GGCTGTTAAAA----GGC--CAA-GAA-----CAACCTTGCACAGGGACGTTTGAATGG-------------CGCCCAACGTAACGAAG-CGTCAGTGATGatcgttaacacgctgccatgtgcacgtggtagtaattaaattcgtatcttgaggctgttaaaaggccaagaacaaccttgcacagggacgtttgaatggcgcccaacgtaacgaagcgtcagtgatgactattatcatgaagttgc
gi|8 : ttgatacatttgtgtgaaatgaaaatgccccaaactgactttatattattttcaccaatcaagagcgttctttatttacttgtacgtccatttcaccttgcgtgaatatgtgaatgatgaattcctttgatctagtttcgtgaacctcgtgcaaatcgttaacacgctgccGATTACAACGTCTTATTCGTAGTATAACACG-----------C-----TGA---TACTG---ACTGCAAACGGTGGTCACATACGGCACTTA--TTTG-TGAACTTTGATTTTAA----CCGTTCGACA-TTGAAGGCAATAAAATTC--CATAAAAAA---GA--TCACATT-TC--AT--TTGTTTCTTATAT--TG-GTCATTC----TTT-A-AACTACTCTTAA----ACTTATT-TTCAATTGTGACAT--ATAAGATATAGCAGTATCGAAAA-ATAATGATTGCATTTCATGGTGC-TTCTCTTTGGCTGTCATTATAactattatcatgaagttgc
gi|9 : ctGTTGACTGCAGGAATTAATGTTCATGATCTATATAGGGGTCATGTGTTGACATCAGAGAGACGCCGTAACTG-TGA---GTAATGATGTCGACATCTGCGATGGATACAAGACCAATAGGA---TGTTGTACCCATTGATGA---------------------GTGCA-AG----GAATACGAAAAGTATAGCGTCGTAGAGGTGAGCGTTAATTTGAGTGCTCCGCCAGACAGCACGCACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGACAGCAAGCACAATGGGGGAAGGGCCTGAGTCATGGTGTGTGTTGGTGGTGTATTTTGGCAGCACAAAACACCCCTGATAGTGGTTGAAGGAGGCCTG
Alignments
lowQualScore : 1 1 111 22 444444444444 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11 555555555555555555555 66666666666666666666666 2222 111 44444444444 1 111 11 33333333 3333333 1 2222222 1 2 111 111 1111 222222 11 2222 111 11 77777777777777777 2222222 1 77777777777777777777777 1 1 11 1 44444444444444444 7777777777777777777777 1 1 1 777777777777777777777777 111 1 22 1 4444444444444444444444444 444444444444444444444444444444 11 111 11 11 11111111 11111111 11 1111
lowQualScore : 5 1 3 6 3 6 1 333 9 3 55 1 6 22 5 1 8 3 0 333333333333 88 8 22 66 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 66 111111111111111111111 1 0 6 3 11111111111111111111111 1 1111 777 0 2 77777777777 2 2 1 6 0 666 44 0 44444444 0 0 0 4444444 0 3 1 1 0 0 8888888 0 0 55 777 222 1 8 3333 8 111111 8 22 1 0 0 1 33 1 1 1 0 999 8 33 4 0 1 0 8888 111 1 1 1 33 55 1 11111111111111111 22 1 0000000 5 1 22 0 0 1 1 00 8 1 0 3 0 3 11 1 0 0 44 2 00000000000000000000000 0 22 0 44 33 1 0 44444444444444444 0000000000000000000000 1 5 1 1 0 0 5 1 5 33333 111111111111111111111111 0 777 0 3 9 1 55 0 1111111111111111111111111 9 555555555555555555555555555555 11 0 444 11 11 88888888 55555555 5 0 0 3 8 0 1 0 66 5 0 0 4444 1 0 5 1
lowQualScore : . . . . . . . ... . . .. . . .. . . . . . ............ .. . .. .. ................................................................................................ .. ..................... . . . . ....................... . .... ... . . ........... . . . . . ... .. . ........ . . . ....... . . . . . . ....... . . .. ... ... . . .... . ...... . .. . . . . .. . . . . ... . .. . . . . .... ... . . . .. .. . ................. .. . ....... . . .. . . . . .. . . . . . . .. . . . .. . ....................... . .. . .. .. . . ................. ...................... . . . . . . . . . ..... ........................ . ... . . . . .. . ......................... . .............................. .. . ... .. .. ........ ........ . . . . . . . . .. . . . .... . . . .
lowQualScore : 5 0 7 7 3 7 0 888 0 8 44 4 4 44 6 0 2 8 8 888888888888 88 0 00 00 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55 222222222222222222222 2 2 5 2 55555555555555555555555 0 2222 555 2 5 55555555555 0 5 2 5 0 777 00 7 00000000 7 7 7 7777777 2 7 0 0 2 0 8888888 0 0 88 555 666 0 0 0000 0 444444 0 22 0 6 2 0 88 2 0 0 2 666 2 00 6 8 0 8 6666 777 0 0 4 88 66 0 22222222222222222 00 4 8888888 0 0 22 6 6 4 4 55 8 0 3 2 2 7 55 0 0 2 55 5 88888888888888888888888 0 88 0 55 88 0 0 77777777777777777 7777777777777777777777 0 5 0 0 7 7 0 0 5 88888 222222222222222222222222 2 555 0 2 8 0 00 0 8888888888888888888888888 8 444444444444444444444444444444 00 8 000 00 88 44444444 22222222 0 8 8 8 0 8 4 8 44 6 6 8 0000 0 8 0 0
consensus : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAATAACGTG-CGTG-AT-TTGTGAAGGACGTCCGCCGCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA--C---AACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAATG---TTG-TCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCC-NCGG-TTCC-AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-AGTTTCAC-C-TTC-GACA-TT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
Reference ( family-710 ) : NAACCATACTCAATGAAAATGCNCCAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAATAACGTG-CGTG-AT-TTGTGAAGGACGTCNNCCGCCCATNATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GG--TTAAGGCTGTTAAAA---CGGC--AAA-GAAC-C---AACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATGATG---TTGGTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGATCCGTATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGGAAGGTGTTGTATTCACTGA-----CGAAT----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGNGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCC-CCGGATTCT-AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-AGTTTNAC-C-TTC-GACA-TT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTNAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
gi|1 : AACTATAC-CAATGAAAATGCACAAAA-TG-TTTGGCTTATTAGTTTCAGTTACCCATT--TCGTTATTTACTTTTTTACATATAAACAAACTTATTGATCGCTTTTCAATGACATGACGTG-AT-TTGAGAAGGACATCCGCTGCCCATG------------------------CAAATCGTTATTTTGCTGACAATCCTTTTTAT--T-ATGAA-CCAGATA-AATGTAC----AC--------GTGGTGG--AT----TTC-ATAA-CT--GAGCTTTATATTATTAAAATTTCGAC--AAAAGAATTC---AACTT----CATTTACGTT---ATAGGA-----------CGCCCAACGTCATGAAGCCGTCAGT-ATGGTAGCC-G-GGAGATAGTCATATATCG---TTG-TTGCACACAGTATGCATTGTTC--TCCACTATCATGCAGTTAGTTAGGCGACACCAAGCAACCGG-CTCT-C---TTGCT-GATAGTCCACG---TCC-AGGACGC-CAA-AGTATGAC-ATC-----TCGTCAGCAAGACCACC-ACACTGTCCTTACGCACCTCCGAGATCGCTTTCAGACAACAACACGGACTGCCCAGGAAGCAAGGGGATATAAGCAGTAACG--CATAAATAGCTCCACCATGCGTCGACGCCTGTAAGATGCAGGCATTTC-AGCCTATGTTCCATATCGGGGTAACGTATTGACATCAGAGAGGCGACGTAAT-ACTGA---GTTGTGTCGTCGG-ATCTACGATGGACGCAAAATCAGTGGAAAGGTGTTCTTTTCACTGA-----CGAGTTCAGGTTTTGTATAGATATTCT-GGATT-GGGGGCGTAAGGTGTGGCGTCTCCGAGGCGAGCGTTACGCAGATTGCTGCGTCAAACAGCATGCACGGTGGGGA-GTGGCAGTGTAATGGTGATGGCAGGTAGTCTGACGGCTCGAAGATACGTTGACGAAAT-CTTGGAACCATGTATTATACCCT-TTCTTCC----AAAT-C-ACC-AT-GTCGTC-ACGCAAT--TTCAGCAGG-ACAACGCTGGGCC-AC---TTTC-AGCCAGAATAACGT--AAG--ACCTGAGCCCT-ATTGAGCATTTATGGCACCAGC-TCGGCGGCGAGTGTACAATGGACGTCACGTCATCAACAACAAGGCACAGTTAGTGCAGACACTGTTAGAC-AGTGGGATGCCATGCCACAATACAGGATT-CAGCGTCTCATCCACAGTA------------------------TGA---GGCCG---AC-GCAAACGGCGGCCAC-T-CGCTACTGAGGTTTG-TGAACTTTCAGTTTCAC-C-CTCTTTCA-TT-TAGGCATTAAAATTCAGCTCAAATGCA---A--TAACA-T-CC--AT--TTGCTTT---TAA--TGA-AATA-TT----GTT-GTAAGT-CCCTGAACATTATTTAAT-TTCAGTTTTGACATCCAAAAAGAAGAGCAG-ACTAAAAATAGAATAAGTATATTTCATGGTGCGTTTTCATTGACCGCCAGTATA
gi|10 : c---GTGGTGTCGTCGGCATCTAAGATGAACACAAAATCATTGGAA---------------T-----------T----GTTTTGTTTAGATGTGCATCCA-A-GAAGGCGTAAAGTGTGGCATCGCCGAGGTGAGCGTTACGTAGATTGCTGCGTCAGACAGCATGCACGGTGGGGACGGGGTTGTGTAATGGT-GTGGaatataagactcctaaacagacgtttg
gi|11 : gtaaccgtcagttAAA---T---A--TCACA-T-TTCGAC--ATGCTTC---TAT--TG--AATAGTC----GTT-A-AAAC-TTTTAAACATTATTTCATGTTTAATTTTGATAT-GAAAAAGTATAGCAGTATCAAATATATACTGATTATTTTTGATGATGTTTTTATATTGACAGTCGTTACAgccggtataccactgcaccacagaacacacctggtagtggttgcaggcagtctga
gi|12 : GAAACCAAGCAATAGGTCTTT-TGAGT-GCT-GGC-GTC-ACGAAATCCGACGTCGCACAACAGTTTAACTGTA-----GTGTCAGCAGGAT-GCTTACATTAGACTCTCGCACCTCCGGAATCGCTTACGACAAGCAACAACAACGGCCCGGtg
gi|13 : TTTCAACGATCTATT--TCATACTCCACTTACTTACTAATACACCCAATTATAGA-CTCT-----------TG-CGTG-ATATTGTGAAGGGCATCCACTACCCATTTTCTAGATTCACGAATCT
gi|15 : ttttttTGACAGGTCATTGATACATTAATGAAATTCTTAGAACCATGCGCTGTGCCCT-T-----TCTGAGAAACC-A-CTAT-GACATC-ACATTGT--TTCAACAAG-ACAATGatt
gi|16 : CAAGTGTACAACGGACGTCACGTCATAAACAACAAGGCATAGTTGGTGCAGct
gi|2 : AATCATATTCAATAAAAATGCTTTAAACTG-CTTGGTTTGTCACTTT-ATT-ATC-ACTGATCGTTCTTCATTTATTCACGAATACACCCAATTATAGACCATTTTTCAATAACAT--TGTG--T-TTTCGAAGGACGCCACCTGCCCATGACCTAGTTTCGTGAACC--ATCAA-AAATCATT-----GCTGACGATCATGCATGT--T-ATGAC-CCAGACA-CATGCCA----AC--------GTTGCAGC-AT----TT---TAATCTCGGA--TTAAAGCTGTTAAAA---CGCCTAGAA-GAAA-CTTGCACAT----TATTTACGTT---ATGGGAAAATTTGATGCCGTTCAACGTTATTAAGCCGTCGGT-GTGGTTGCC-GGTGAAATA-TAATATGATGAGGTTG--CGCACACAATGCGTAT---------CACTATCATGCCGTTAGTCAAGAGACAACTGGAAACTGG-CTCT-A---T-GGTCGAC-CTCC-CA---TCC---------CAG-AA-ATGGA-GTCGTGAACCATCAATAAGACCGGC-ATATTATCCTTACGCAACTCAGAGATTGCTTTCAAACAGCAACATGAAAT---CGGAAAGCAAGGGTAAACAAGCAGCAACG--CATTAGTCGATCAGTTGTACGCCGAAACTTTTTGGCTGCAGGAATTGACAGC----GG-------AGAGGTGATGGAT--GCAT------GGTGTCGT------TGA----------------CATTTACGATGGACACATTATCAGTGGAAAGGTATTTTATTCAC------------------TTTTGTACAGACATGTA-CGA-TGGAAGGTGTAAAGTATGGCGTCGCAAAGATAAACGGTATGTTGATTGGTGCGCAAGACAGCACGCACGATGAACAGTGGGTAGTGTTATTGT
gi|2 : acattaatatgtatTGATAGTAGTAGAAGGACGTCTGACAGCTCAGGAATAAAGCGATGAAAT-CTTTGAACCGCGCATTGTGC----------------AA--CAA-T-ATAGA--TCTACGCCCCCATTCGGCCAGAATAATAT-----C-CTAGTTTCTGAGACAGAATAACGTTCAAGCTACT---GCTCTGGTCGAACATTTATGGGACCAGCTTTGTCGTCAGATGTGCAGCGGGCGTCACGTGACAAATAGCGAGGtcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|2 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatcccACAGCTTCTTAATTGCTATATGAGACG-----------CATATTTCAAACGGCCGTGAAC-GCAAATGGCGGCTACATACGGTACTGA--TTTG-TGAACTTT-GGATACACGC-TTC-AACATTT-AAGGCAATGAAATTC--CACAAA---A---ATCTCACA-TATC--ATTGTTTCTTC---TAT--TGA-GGTT-TC----GTTAA-AAAG-CTCTGAA-AC--TTTCAT-T----TTTTG---TT-------TATTGC-----------TATAATGAGTGTATGTAATGGTACGTTTTCACTGACCGagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|3 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaag-ACGATGT-CAA-AGAATGAT-GTC-----CCGACAGCAATACCGCC-ATTCTGTCCTTACGCACTTCCGAAATTGCTTTTAAAGAGCAACACGGACTGCGTAGGAAACAAAGGAATACAACCTGCAACGCACATCAGTCGATCAACTGTGCGTTAACGATTGTTGACTTCAAGAATTGA-AGAGCATGGTCCGTACAGGGGTAATTTATTGACCGCAGAGAAGCGCCGCAAG-A-TCA---GTGGttt
gi|3 : cgctcaagCGCAAGATCAGTGGGAAAGCGTGGTATTCGCTGATTAATC-AAT----GTTTTGAATAGACATACA-CGA-T-GGA------AAG-----CATCGCAGAGGTGGACGGTTTGCTGATTGCTGCGTAAGACAGCACTCACGATGTTGACGGAGTAGTGTAATGGTGgaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|3 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgcTGATAGCGGTTGAAGGATGTCTAACAGCTCAGAGATACAATGATGGAAT-CTTGGAATCATGATTTGTGTCCTGT-----C----GAA--G-A-C-GT-GACGCC-ACGTTGT--TTCAACCAG-ATAACATCAGATCGTCGGATTC--AGCCTGAATAACAT-----CTA---------------AGCAATTATGGAACCAGtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|4 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgccgcaagatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacaccccTTCACGAATCTATT--TCGTACTCCACTTACTTACTTATACACCCAATTATAGACCCCTTTT-------GTG----G-AT-TTGTGAAGGTCATCCACAACCCAT--TCTA--TTAGT----TTCATGAA---ATCTGT-----GC-GA--ACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGTGTGGTAGC-AT----TTCAATTA-TT--GGC-TTAAGGCT-TT--------GG---AAA-G---------ACAT----TCTTTACGTA---ATTGGA-----------CGCTTGAC--TATGCAGTCGTCATT-ATGGTAGCCTG-TGAAAT-GTCATATAAT----TAGGTTGCGCTTAGAATGCACT--TCATTCCACAATCATG
gi|5 : ttctagaC--TTCACTACCATGCGATTAGTGAGACGACACCAAGAAACCGG-CTCTGC---T-GCT-GATTGTCCACG---TCA-AGGACGC-CAA--TTGTGAC-GTC-----TCGTCAACAAGACCGTC-ATATTGTCCTTACGCACCCCCGAGA-----------CAGCAACACGGACTGACCAGGAAGCAAGGGGATGTAACCAGCAACG--CATTAGCCGCTCTACCGAACGCCGACGTCAGTTAGATGCCGGAATTTC-AGCCCATTATCCATATAGGGGTAACGTATTGACACCAGAGAGGCGACGTAACAG-TGAGTTGTGGTGTCGTCTGCCTCAACGATGGta
gi|6 : tgttctcaTAAACGAGCGGGATGCCGTCCCACAATGCAGGACT-CAGCGTCTCATCCGCAGTATGAGGCGTATTTGCCAGTC-----TGT---AGTAG---AC-GCAAACGGCGGCCACACTTGTTACTGA-GTTTGCTGAACTC--AGTT-------------CA----AATGCA-TAAAATCC------------------------------AT--TTGCT-C---TTTCATGA-AATA-TTTGTTGTT-A-G--T-ACCTGAGCATTATTTTAT-TTCAGTTTTGACATCCAAAAAGTAGAGCAGT-CTAAAAATATAATAAGTATATTACATGGTGCGTTTTCATTGACCGCCAGTATA
gi|7 : AATGAAAATGCCCCAAACTGACTT--TATATTATTTTCACCAATCAA--GAGCGTTCT----TTATTTACTTGTACGTCCA-------------TTTC---ACCTTG-CGTGAAT-ATGTGAATGATGAATTCCTT---TGATCTAGTTTCGTGAACCTCGTG--CAAATCGT--------TAACA--CGCTG--------------CC-------ATGTGC----AC--------GTGGTAGTAATTAAATTC-GTAT-C-------TTGAGGCTGTTAAAA----GGC--CAA-GAA--C---AACCTTGCACAGGGACGTTTGAATGG-------------CGCCCAACGTAACGAAG-CGTCAGTGATGctgactttcaatttcataaaaaagggacgtg
gi|8 : ttgatacatttgtgtgaGATTACAACGTCTTATTCGTAGTATAACACG-----------C-----TGA---TACTG---ACTGCAAACGGTGGTCACATACGGCACTTA--TTTG-TGAACTTTGATTTTAAC-CGTTC-GACA-TTGAAGGCAATAAAATTC--CATAAA---AAAGA--TCACATT-TC--AT--TTGTTTCTTATAT--TGGTCAT--TC----TTT-A-AACTACTCTTAAACTTAT----T-TTCAATTGTGACATATAAGA--TATAGCAGTATCGAAAA-ATAATGATTGCATTTCATGGTGC-TTCTCTTTGGCTGTCATTATAactattatcatgaagttgc
gi|9 : ctGTTGACTGCAGGAATTAA-TGTTCATGATCTATATAGGGGTCATGTGTTGACATCAGAGAGACGCCGTAACTG-TGA---GTAATGATGTCGACATCTGCGATGGATACAAGACCAATAGGA---TGTTGTACCCATTGA-----TGA-------------------GTGCA-AG----GAATACGAAAAGTATAGCGTCGTAGAGGTGAGCGTTAATTTGAGTGCTCCGCCAGACAGCACGCACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGACAGCAAGCACAATGGGGGAAGGGCCTGAGTCATGGTGTGTGTTGGTGGTGTATTTTGGCAGCACAAAACACCCCTGATAGTGGTTGAAGGAGGCCTG
Alignments
lowQualScore : 1 1 111 22 444444444444 111 22222 44444444444444444444444444 66666666666666666666666666666666666666666666666666666666666666 11 444444444444444444444 555555555555555555555 2222 111 44444444444 1 111 11 222 3333333 1 2222222 1 2 111 111 1111 222222 11 2222 111 66666666666666666 2222222 1 77777777777777777777777 1 1 11 1 22222222222 1 7777777777777777777777 1 1 1 777777777777777777777777 111 1 22 1 11 44444444444444444444 444444444444444444444444444444 11 111 11 11 11111111 11111111 11 1111
lowQualScore : 5 1 1 6 3 6 1 333 9 3 55 1 6 22 5 1 8 3 0 333333333333 0 8 8 111 00000 33333333333333333333333333 0 11111111111111111111111111111111111111111111111111111111111111 66 777777777777777777777 1 0 6 3 444444444444444444444 3 1 1111 777 0 2 77777777777 2 2 1 6 0 666 44 333 88 0 0 4444444 0 3 1 1 0 0 8888888 0 0 55 777 222 1 8 3333 8 111111 8 22 1 0 0 1 33 1 1 1 0 999 8 22 0 1 0 8888 111 1 1 1 3 5 44 1 44444444444444444 22 1 0000000 5 1 22 0 0 1 1 00 8 0 3 0 3 11 1 0 0 44 2 00000000000000000000000 0 22 0 44 33 1 0 99999999999 0 3 0000000000000000000000 1 5 1 1 0 0 5 1 5 33333 111111111111111111111111 0 777 0 3 9 1 55 0 33 44444444444444444444 9 555555555555555555555555555555 11 0 444 11 11 88888888 55555555 5 0 0 3 8 0 1 0 66 5 0 0 4444 1 0 5 1
lowQualScore : . . . . . . . ... . . .. . . .. . . . . . ............ . . . ... ..... .......................... . .............................................................. .. ..................... . . . . ..................... . . .... ... . . ........... . . . . . ... .. ... .. . . ....... . . . . . . ....... . . .. ... ... . . .... . ...... . .. . . . . .. . . . . ... . .. . . . .... ... . . . . . .. . ................. .. . ....... . . .. . . . . .. . . . . . .. . . . .. . ....................... . .. . .. .. . . ........... . . ...................... . . . . . . . . . ..... ........................ . ... . . . . .. . .. .................... . .............................. .. . ... .. .. ........ ........ . . . . . . . . .. . . . .... . . . .
lowQualScore : 5 0 0 7 3 7 0 888 0 8 44 4 4 44 6 0 2 8 8 888888888888 8 0 0 888 44444 88888888888888888888888888 2 00000000000000000000000000000000000000000000000000000000000000 55 888888888888888888888 2 2 5 2 555555555555555555555 2 0 2222 555 2 5 55555555555 0 5 2 5 0 777 00 333 00 7 7 7777777 2 7 0 0 2 0 8888888 0 0 88 555 666 0 0 0000 0 444444 0 22 0 6 2 0 88 2 0 0 2 666 2 22 8 0 8 6666 777 0 0 4 8 6 44 0 00000000000000000 00 4 8888888 0 0 22 6 6 4 4 55 8 3 2 2 7 55 0 0 2 55 5 88888888888888888888888 0 88 0 55 88 0 0 00000000000 7 3 7777777777777777777777 0 5 0 0 7 7 0 0 5 88888 222222222222222222222222 2 555 0 2 8 0 00 0 22 88888888888888888888 8 444444444444444444444444444444 00 8 000 00 88 44444444 22222222 0 8 8 2 0 8 4 8 44 6 6 8 0000 0 8 0 0
consensus : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-ACGTG-CGTGAT-T-TGTGAAGGACG--TCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA-C---CAACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TTGTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCC-TCG-TTTC-AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACA-TT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
Reference ( family-710 ) : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAATAACGTG-CGTGAT-T-TGTGAAGGACG--TCCGCC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA-----CAACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAATG---TTGTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCC-NCGGTTCC-AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-AGTTTC-AC-C-TTC-GACA-TT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
gi|1 : AACTATAC-CAATGAAAATGCACAAAA-TG-TTTGGCTTATTAGTTTCAGTTACCCATT--TCGTTATTTACTTTTTTACATATAAACAAACTTATTGATCGCTTTTCAATGACATGACGTGAT-T-TGAGAAGGACA--TCCGCT-GCCCATG------------------------CAAATCGTTATTTTGCTGACAATCCTTTTTAT--T-ATGAA-CCAGATA-AATGTAC----AC--------GTGGTGG--AT----TTC-ATAA-CT--GAGCTTTATATTATTAAAATTTCGAC--AAAAGAATT---CAACTT----CATTTACGTT---ATAGGA-----------CGCCCAACGTCATGAAGCCGTCAGT-ATGGTAGCC-G-GGAGATAGTCATATATCG---TTGTTGCACACAGTATGCATTGTTC--TCCACTATCATGCAGTTAGTTAGGCGACACCAAGCAACCGG-CTCT-C---TTGCT-GATAGTCCACG---TCC-AGGACGC-CAA-AGTATGAC-ATC-----TCGTCAGCAAGACCACC-ACACTGTCCTTACGCACCTCCGAGATCGCTTTCAGACAACAACACGGACTGCCCAGGAAGCAAGGGGATATAAGCAGTAACG--CATAAATAGCTCCACCATGCGTCGACGCCTGTAAGATGCAGGCATTTC-AGCCTATGTTCCATATCGGGGTAACGTATTGACATCAGAGAGGCGACGTAAT-ACTGA---GTTGTGTCGTCGG-ATCTACGATGGACGCAAAATCAGTGGAAAGGTGTTCTTTTCACTGA-----CGAGTTCAGGTTTTGTATAGATATTCT-GGATT-GGGGGCGTAAGGTGTGGCGTCTCCGAGGCGAGCGTTACGCAGATTGCTGCGTCAAACAGCATGCACGGTGGGGA-GTGGCAGTGTAATGGTGATGGCAGGTAGTCTGACGGCTCGAAGATACGTTGACGAAAT-CTTGGAACCATGTATTATACCCT-TTCTTCC----AAAT-C-ACC-AT-GTCGTC-ACGCAAT--TTCAGCAGG-ACAACGCTGGGCC-AC--TTTC-AGCCAGAATAACGT--AAG--ACCTGAGCCCT-ATTGAGCATTTATGGCACCAGC-TCGGCGGCGAGTGTACAATGGACGTCACGTCATCAACAACAAGGCACAGTTAGTGCAGACACTGTTAGAC-AGTGGGATGCCATGCCACAATACAGGATT-CAGCGTCTCATCCACAGTA------------------------TGA---GGCCG---AC-GCAAACGGCGGCCAC-T-CGCTACTGAGGTTTG-TGAACTTTCAGTTTC-AC-C-CTCTTTCA-TT-TAGGCATTAAAATTCAGCTCAAATGCA---A--TAACA-T-CC--AT--TTGCTTT---TAA--TGA-AATA-TT----GTT-GTAAGT-CCCTGAACATTATTTAAT-TTCAGTTTTGACATCCAAAAAGAAGAGCAG-ACTAAAAATAGAATAAGTATATTTCATGGTGCGTTTTCATTGACCGCCAGTATA
gi|10 : c---GTGGTGTCGTCGGCATCTAAGATGAACACAAAATCATTGGAA---------------T-----------T----GTTTTGTTTAGATGTGCATCCA-A-GAAGGCGTAAAGTGTGGCATCGCCGAGGTGAGCGTTACGTAGATTGCTGCGTCAGACAGCATGCACGGTGGGGACGGGGTTGTGTAATGGT-GTGGaatataagactcctaaacagacgtttg
gi|11 : gtaaccgtcagttAAA---T---A--TCACA-T-TTCGAC--ATGCTTC---TAT--TG--AATAGTC----GTT-A-AAAC-TTTTAAACATTATTTCATGTTTAATTTTGATAT-GAAAAAGTATAGCAGTATCAAATATATACTGATTATTTTTGATGATGTTTTTATATTGACAGTCGTTACAgccggtataccactgcaccacagaacacacctggtagtggttgcaggcagtctga
gi|12 : GAAACCAAGCAATAGGTCTTT-TGAGT-GCT-GGC-GTC-ACGAAATCCGACGTCGCACAACAGTTTAACTGTA-----GTGTCAGCAGGAT-GCTTACATTAGACTCTCGCACCTCCGGAATCGCTTACGACAAGCAACAACAACGGCCCGGtg
gi|13 : TTTCAACGATCTATT--TCATACTCCACTTACTTACTAATACACCCAATTATAGA-CTCT-----------TG-CGTGATAT-TGTGAAGGGCA--TCCACT-ACCCATTTTCTAGATTCACGAATCT
gi|15 : ttttttTGACAGGTCATTGATACATTAATGAAATTCTTAGAACCATGCGCTGTGCCCT-T-----TCTGAGAAACC-A-CTAT-GACATC-ACATTGT--TTCAACAAG-ACAATGatt
gi|16 : CAAGTGTACAACGGACGTCACGTCATAAACAACAAGGCATAGTTGGTGCAGct
gi|2 : AATCATATTCAATAAAAATGCTTTAAACTG-CTTGGTTTGTCACTTT-ATT-ATC-ACTGATCGTTCTTCATTTATTCACGAATACACCCAATTATAGACCATTTTTCAATAACAT--TGTG-T-T-TTCGAAGGACG---CCACCTGCCCATGACCTAGTTTCGTGAACC--ATCAA-AAATCATT-----GCTGACGATCATGCATGT--T-ATGAC-CCAGACA-CATGCCA----AC--------GTTGCAGC-AT----TT---TAATCTCGGA--TTAAAGCTGTTAAAA---CGCCTAGAA-GAAACTTGCA-CAT----TATTTACGTT---ATGGGAAAATTTGATGCCGTTCAACGTTATTAAGCCGTCGGT-GTGGTTGCC-GGTGAAATA-TAATATGATGAGGTTG-CGCACACAATGCGTAT---------CACTATCATGCCGTTAGTCAAGAGACAACTGGAAACTGG-CTCT-A---T-GGTCGAC-CTCC-CA---TCC---------CAG-AA-ATGGA-GTCGTGAACCATCAATAAGACCGGC-ATATTATCCTTACGCAACTCAGAGATTGCTTTCAAACAGCAACATGAAAT---CGGAAAGCAAGGGTAAACAAGCAGCAACG--CATTAGTCGATCAGTTGTACGCCGAAACTTTTTGGCTGCAGGAATTGACAGC----GG-------AGAGGTGATGGAT--GCAT------GGTGTCGT------TGA----------------CATTTACGATGGACACATTATCAGTGGAAAGGTATTTTATTCAC------------------TTTTGTACAGACATGTA-CGA-TGGAAGGTGTAAAGTATGGCGTCGCAAAGATAAACGGTATGTTGATTGGTGCGCAAGACAGCACGCACGATGAACAGTGGGTAGTGTTATTGT
gi|2 : acattaatatgtatTGATAGTAGTAGAAGGACGTCTGACAGCTCAGGAATAAAGCGATGAAAT-CTTTGAACCGCGCATTGTGC----------------AA--CAA-T-ATAGA--TCTACGCCCCCATTCGGCCAGAATAATAT----CC-TAGTTTCTGAGACAGAATAACGTTCAAGCTACT---GCTCTGGTCGAACATTTATGGGACCAGCTTTGTCGTCAGATGTGCAGCGGGCGTCACGTGACAAATAGCGAGGtcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|2 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatcccACAGCTTCTTAATTGCTATATGAGACG-----------CATATTTCAAACGGCCGTGAAC-GCAAATGGCGGCTACATACGGTACTGA--TTTG-TGAACTTT-GGATAC-ACGC-TTC-AACATTT-AAGGCAATGAAATTC--CACAAA---A---ATCTCACA-TATC--ATTGTTTCTTC---TAT--TGA-GGTT-TC----GTTAA-AAAG-CTCTGAA-AC--TTTCAT-T----TTTTG---TT-------TATTGC-----------TATAATGAGTGTATGTAATGGTACGTTTTCACTGACCGagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|3 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaag-ACGATGT-CAA-AGAATGAT-GTC-----CCGACAGCAATACCGCC-ATTCTGTCCTTACGCACTTCCGAAATTGCTTTTAAAGAGCAACACGGACTGCGTAGGAAACAAAGGAATACAACCTGCAACGCACATCAGTCGATCAACTGTGCGTTAACGATTGTTGACTTCAAGAATTGA-AGAGCATGGTCCGTACAGGGGTAATTTATTGACCGCAGAGAAGCGCCGCAAG-A-TCA---GTGGttt
gi|3 : cgctcaagCGCAAGATCAGTGGGAAAGCGTGGTATTCGCTGATTAATCAA-T----GTTTTGAATAGACATACA-CGA-T-GGA------AAG-----CATCGCAGAGGTGGACGGTTTGCTGATTGCTGCGTAAGACAGCACTCACGATGTTGACGGAGTAGTGTAATGGTGgaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|3 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgcTGATAGCGGTTGAAGGATGTCTAACAGCTCAGAGATACAATGATGGAAT-CTTGGAATCATGATTTGTGTCCTGT-----C----GAA--G-A-C-GT-GACGCC-ACGTTGT--TTCAACCAG-ATAACATCAGATCGTCGGATTC-AGCCTGAATAACAT-----CTA---------------AGCAATTATGGAACCAGtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|4 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgccgcaagatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacaccccTTCACGAATCTATT--TCGTACTCCACTTACTTACTTATACACCCAATTATAGACCCCTTTT-------GTG----GAT-T-TGTGAAGGTCA--TCCACA-ACCCAT--TCTA--TTAGT----TTCATGAA---ATCTGT-----GC-GA--ACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGTGTGGTAGC-AT----TTCAATTA-TT--GGC-TTAAGGCT-TT--------GG---AAA-G---------ACAT----TCTTTACGTA---ATTGGA-----------CGCTTGAC--TATGCAGTCGTCATT-ATGGTAGCCTG-TGAAAT-GTCATATAATT---AGGTTGCGCTTAGAATGCACT--TCATTCCACAATCATG
gi|5 : ttctagaC--TTCACTACCATGCGATTAGTGAGACGACACCAAGAAACCGG-CTCTGC---T-GCT-GATTGTCCACG---TCA-AGGACGC-CAA--TTGTGAC-GTC-----TCGTCAACAAGACCGTC-ATATTGTCCTTACGCACCCCCGAGA-----------CAGCAACACGGACTGACCAGGAAGCAAGGGGATGTAACCAGCAACG--CATTAGCCGCTCTACCGAACGCCGACGTCAGTTAGATGCCGGAATTTC-AGCCCATTATCCATATAGGGGTAACGTATTGACACCAGAGAGGCGACGTAACAG-TGAGTTGTGGTGTCGTCTGCCTCAACGATGGta
gi|6 : tgttctcaTAAACGAGCGGGATGCCGTCCCACAATGCAGGACT-CAGCGTCTCATCCGCAGTATGAGGCGTATTTGCCAGTC-----TGT---AGTAG---AC-GCAAACGGCGGCCACACTTGTTACTGA-GTTTGCTGAACTC--AGTT--------------CA----AATGCA-TAAAATCC------------------------------AT--TTGCT-C---TTTCATGA-AATA-TTTGTTGTT-A-G--T-ACCTGAGCATTATTTTAT-TTCAGTTTTGACATCCAAAAAGTAGAGCAGT-CTAAAAATATAATAAGTATATTACATGGTGCGTTTTCATTGACCGCCAGTATA
gi|7 : AATGAAAATGCCCCAAACTGACTT--TATATTATTTTCACCAATCAA--GAGCGTTCT----TTATTTACTTGTACGTCCA-------------TTTCAC---CTTG-CGTGAA-TATGTGAATGATGAATTC------CTTTGATCTAGTTTCGTGAACCTCGTG--CAAATCGTT-----A---ACA--CGCTG--------------CC-------ATGTGC----AC--------GTGGTAGTAATTAAATTC-GTAT-C-------TTGAGGCTGTTAAAA----GGC--CAA-GAA-----CAACCTTGCACAGGGACGTTTGAATGG-------------CGCCCAACGTAACGAAG-CGTCAGTGATGctgactttcaatttcataaaaaagggacgtg
gi|8 : ttgatacatttgtgtgaGATTACAACGTCTTATTCGTAGTATAACACG-----------C-----TGA---TACTG---ACTGCAAACGGTGGTCACATACGGCACTTA--TTTG-TGAACTTT-GATTTTAAC-CGTTC-GACA-TTGAAGGCAATAAAATTC--CATAAA---AAAGA--TCACATT-TC--AT--TTGTTTCTTATAT--TGGTCAT--TC----TTT-A-AACTACTCTTAAACTTAT----T-TTCAATTGTGACATATAAGA--TATAGCAGTATCGAAAA-ATAATGATTGCATTTCATGGTGC-TTCTCTTTGGCTGTCATTATAactattatcatgaagttgc
gi|9 : ctGTTGACTGCAGGAATTAA-TGTTCATGATCTATATAGGGGTCATGTGTTGACATCAGAGAGACGCCGTAACTG-TGA---GTAATGATGTCGACATCTGCGATGGATACAAGACCAATAG---GATGTTGTACCCATTGA-----TGA-------------------GTGCA-AG----GAATACGAAAAGTATAGCGTCGTAGAGGTGAGCGTTAATTTGAGTGCTCCGCCAGACAGCACGCACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGACAGCAAGCACAATGGGGGAAGGGCCTGAGTCATGGTGTGTGTTGGTGGTGTATTTTGGCAGCACAAAACACCCCTGATAGTGGTTGAAGGAGGCCTG
Alignments
lowQualScore : 1 1 111 22 5555555555555 1 111 44444444444444444444444444 66666666666666666666666666666666666666666666666666666666666666 11 444444444444444444444 66666666666666666666666 2222 111 44444444444 1 111 11 333333333 3333333 1 2222222 1 2 111 111 1111 222222 11 2222 111 66666666666666666 2222222 1 77777777777777777777777 1 1 11 1 44444444444444 11 7777777777777777777777 1 1 1 777777777777777777777777 111 1 22 1 1111 444444444444444444 444444444444444444444444444444 11 111 11 11 11111111 11111111 11 1111
lowQualScore : 5 1 1 6 3 6 1 333 9 3 55 1 6 22 5 1 8 3 0 1111111111111 0 8 8 0 444 33333333333333333333333333 0 11111111111111111111111111111111111111111111111111111111111111 66 777777777777777777777 1 0 6 3 11111111111111111111111 1 1111 777 0 2 77777777777 2 2 1 6 0 666 44 444444444 88 0 0 4444444 0 3 1 1 0 0 8888888 0 0 55 777 222 1 8 3333 8 111111 8 22 1 0 0 1 33 1 1 1 0 999 8 22 0 1 0 8888 111 1 1 1 3 5 44 1 44444444444444444 22 1 0000000 5 1 22 0 0 1 1 00 8 0 3 0 3 11 1 0 0 44 2 00000000000000000000000 0 22 0 44 33 1 0 66666666666666 88 0000000000000000000000 1 5 1 1 0 0 5 1 5 33333 111111111111111111111111 0 777 0 3 9 1 55 0 4444 111111111111111111 9 555555555555555555555555555555 11 0 444 11 11 88888888 55555555 5 0 0 3 8 0 1 0 66 5 0 0 4444 1 0 5 1
lowQualScore : . . . . . . . ... . . .. . . .. . . . . . ............. . . . . ... .......................... . .............................................................. .. ..................... . . . . ....................... . .... ... . . ........... . . . . . ... .. ......... .. . . ....... . . . . . . ....... . . .. ... ... . . .... . ...... . .. . . . . .. . . . . ... . .. . . . .... ... . . . . . .. . ................. .. . ....... . . .. . . . . .. . . . . . .. . . . .. . ....................... . .. . .. .. . . .............. .. ...................... . . . . . . . . . ..... ........................ . ... . . . . .. . .... .................. . .............................. .. . ... .. .. ........ ........ . . . . . . . . .. . . . .... . . . .
lowQualScore : 5 0 0 7 3 7 0 888 0 8 44 4 4 44 6 0 2 8 8 4444444444444 8 0 0 6 000 88888888888888888888888888 2 00000000000000000000000000000000000000000000000000000000000000 55 888888888888888888888 2 2 5 2 55555555555555555555555 0 2222 555 2 5 55555555555 0 5 2 5 0 777 00 000000000 00 7 7 7777777 2 7 0 0 2 0 8888888 0 0 88 555 666 0 0 0000 0 444444 0 22 0 6 2 0 88 2 0 0 2 666 2 22 8 0 8 6666 777 0 0 4 8 6 44 0 00000000000000000 00 4 8888888 0 0 22 6 6 4 4 55 8 3 2 2 7 55 0 0 2 55 5 88888888888888888888888 0 88 0 55 88 0 0 77777777777777 33 7777777777777777777777 0 5 0 0 7 7 0 0 5 88888 222222222222222222222222 2 555 0 2 8 0 00 0 0000 000000000000000000 8 444444444444444444444444444444 00 8 000 00 88 44444444 22222222 0 8 8 2 0 8 4 8 44 6 6 8 0000 0 8 0 0
consensus : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA--C---AACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACA-TT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
Reference ( family-710 ) : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAAC-C---AACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACA-TT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
gi|1 : AACTATAC-CAATGAAAATGCACAAAA-TG-TTTGGCTTATTAGTTTCAGTTACCCATT--TCGTTATTTACTTTTTTACATATAAACAAACTTATTGATCGCTTTTCAATGA-CATGACGTGAT-T-TGAGAAGGACATCCGCT-GCCCATG------------------------CAAATCGTTATTTTGCTGACAATCCTTTTTAT--T-ATGAA-CCAGATA-AATGTAC----AC--------GTGGTGG--AT----TTC-ATAA-CT--GAGCTTTATATTATTAAAATTTCGAC--AAAAGAATTC---AACTT----CATTTACGTT---ATAGGA-----------CGCCCAACGTCATGAAGCCGTCAGT-ATGGTAGCC-G-GGAGATAGTCATATATCG---TT--GTTGCACACAGTATGCATTGTTC--TCCACTATCATGCAGTTAGTTAGGCGACACCAAGCAACCGG-CTCT-C---TTGCT-GATAGTCCACG---TCC-AGGACGC-CAA-AGTATGAC-ATC-----TCGTCAGCAAGACCACC-ACACTGTCCTTACGCACCTCCGAGATCGCTTTCAGACAACAACACGGACTGCCCAGGAAGCAAGGGGATATAAGCAGTAACG--CATAAATAGCTCCACCATGCGTCGACGCCTGTAAGATGCAGGCATTTC-AGCCTATGTTCCATATCGGGGTAACGTATTGACATCAGAGAGGCGACGTAAT-ACTGA---GTTGTGTCGTCGG-ATCTACGATGGACGCAAAATCAGTGGAAAGGTGTTCTTTTCACTGA-----CGAGTTCAGGTTTTGTATAGATATTCT-GGATT-GGGGGCGTAAGGTGTGGCGTCTCCGAGGCGAGCGTTACGCAGATTGCTGCGTCAAACAGCATGCACGGTGGGGA-GTGGCAGTGTAATGGTGATGGCAGGTAGTCTGACGGCTCGAAGATACGTTGACGAAAT-CTTGGAACCATGTATTATACCCT-TTCTTCC----AAAT-C-ACC-AT-GTCGTC-ACGCAAT--TTCAGCAGG-ACAACGCTGGGCCAC-T----TTC--AGCCAGAATAACGT--AAG--ACCTGAGCCCT-ATTGAGCATTTATGGCACCAGC-TCGGCGGCGAGTGTACAATGGACGTCACGTCATCAACAACAAGGCACAGTTAGTGCAGACACTGTTAGAC-AGTGGGATGCCATGCCACAATACAGGATT-CAGCGTCTCATCCACAGTA------------------------TGA---GGCCG---AC-GCAAACGGCGGCCAC-T-CGCTACTGAGGTTTG-TGAACTTTCAGTTTC-AC-C-CTCTTTCA-TT-TAGGCATTAAAATTCAGCTCAAATGCA---A--TAACA-T-CC--AT--TTGCTTT---TAA--TGA-AATA-TT----GTT-GTAAGT-CCCTGAACATTATTTAAT-TTCAGTTTTGACATCCAAAAAGAAGAGCAG-ACTAAAAATAGAATAAGTATATTTCATGGTGCGTTTTCATTGACCGCCAGTATA
gi|10 : c---GTGGTGTCGTCGGCATCTAAGATGAACACAAAATCATTGGAA---------------T-----------T----GTTTTGTTTAGATGTGCATCCA-A-GAAGGCGTAAAGTGTGGCATCGCCGAGGTGAGCGTTACGTAGATTGCTGCGTCAGACAGCATGCACGGTGGGGACGGGGTTGTGTAATGGT-GTGGaatataagactcctaaacagacgtttg
gi|11 : gtaaccgtcagttAAA---T---A--TCACA-T-TTCGAC--ATGCTTC---TAT--TG--AATAGTC----GTT-A-AAAC-TTTTAAACATTATTTCATGTTTAATTTTGATAT-GAAAAAGTATAGCAGTATCAAATATATACTGATTATTTTTGATGATGTTTTTATATTGACAGTCGTTACAgccggtataccactgcaccacagaacacacctggtagtggttgcaggcagtctga
gi|12 : GAAACCAAGCAATAGGTCTTT-TGAGT-GCT-GGC-GTC-ACGAAATCCGACGTCGCACAACAGTTTAACTGTA-----GTGTCAGCAGGAT-GCTTACATTAGACTCTCGCACCTCCGGAATCGCTTACGACAAGCAACAACAACGGCCCGGtg
gi|13 : TTTCAACGATCTATT--TCATACTCCACTTACTTACTAATACACCCAATTATAGA-CTCT------------TG-CGTGATAT-TGTGAAGGGCATCCACT-ACCCATTTTCTAGATTCACGAATCT
gi|15 : ttttttTGACAGGTCATTGATACATTAATGAAATTCTTAGAACCATGCGCTGTGCCCT-T-----TCTGAGAAACC-A-CTAT-GACATC-ACATTGT--TTCAACAAG-ACAATGatt
gi|16 : CAAGTGTACAACGGACGTCACGTCATAAACAACAAGGCATAGTTGGTGCAGct
gi|2 : AATCATATTCAATAAAAATGCTTTAAACTG-CTTGGTTTGTCACTTT-ATT-ATC-ACTGATCGTTCTTCATTTATTCACGAATACACCCAATTATAGACCATTTTTCAAT-AACAT--TGTG-T-T-TTCGAAGGACG-CCACCTGCCCATGACCTAGTTTCGTGAACC--ATCAA-AAATCATT-----GCTGACGATCATGCATGT--T-ATGAC-CCAGACA-CATGCCA----AC--------GTTGCAGC-AT----TT---TAATCTCGGA--TTAAAGCTGTTAAAA---CGCCTAGAA-GAAA-CTTGCACAT----TATTTACGTT---ATGGGAAAATTTGATGCCGTTCAACGTTATTAAGCCGTCGGT-GTGGTTGCC-GGTGAAATA-TAATATGATGAGGTT--G-CGCACACAATGCGTAT---------CACTATCATGCCGTTAGTCAAGAGACAACTGGAAACTGG-CTCT-A---T-GGTCGAC-CTCC-CA---TCC---------CAG-AA-ATGGA-GTCGTGAACCATCAATAAGACCGGC-ATATTATCCTTACGCAACTCAGAGATTGCTTTCAAACAGCAACATGAAAT---CGGAAAGCAAGGGTAAACAAGCAGCAACG--CATTAGTCGATCAGTTGTACGCCGAAACTTTTTGGCTGCAGGAATTGACAGC----GG-------AGAGGTGATGGAT--GCAT------GGTGTCGT------TGA----------------CATTTACGATGGACACATTATCAGTGGAAAGGTATTTTATTCAC------------------TTTTGTACAGACATGTA-CGA-TGGAAGGTGTAAAGTATGGCGTCGCAAAGATAAACGGTATGTTGATTGGTGCGCAAGACAGCACGCACGATGAACAGTGGGTAGTGTTATTGT
gi|2 : acattaatatgtatTGATAGTAGTAGAAGGACGTCTGACAGCTCAGGAATAAAGCGATGAAAT-CTTTGAACCGCGCATTGTGC----------------AA--CAA-T-ATAGA--TCTACGCCCCCATTCGGCCAGAATAATAT----CCTAGT----TTCTGAGACAGAATAACGTTCAAGCTACT---GCTCTGGTCGAACATTTATGGGACCAGCTTTGTCGTCAGATGTGCAGCGGGCGTCACGTGACAAATAGCGAGGtcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|2 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatcccACAGCTTCTTAATTGCTATATGAGACG-----------CATATTTCAAACGGCCGTGAAC-GCAAATGGCGGCTACATACGGTACTGA--TTTG-TGAACTTT-GGATAC-ACGC-TTC-AACATTT-AAGGCAATGAAATTC--CACAAA---A---ATCTCACA-TATC--ATTGTTTCTTC---TAT--TGA-GGTT-TC----GTTAA-AAAG-CTCTGAA-AC--TTTCAT-T----TTTTG---TT-------TATTGC-----------TATAATGAGTGTATGTAATGGTACGTTTTCACTGACCGagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|3 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaag-ACGATGT-CAA-AGAATGAT-GTC-----CCGACAGCAATACCGCC-ATTCTGTCCTTACGCACTTCCGAAATTGCTTTTAAAGAGCAACACGGACTGCGTAGGAAACAAAGGAATACAACCTGCAACGCACATCAGTCGATCAACTGTGCGTTAACGATTGTTGACTTCAAGAATTGA-AGAGCATGGTCCGTACAGGGGTAATTTATTGACCGCAGAGAAGCGCCGCAAG-A-TCA---GTGGttt
gi|3 : cgctcaagCGCAAGATCAGTGGGAAAGCGTGGTATTCGCTGATTAATCAA-T----GTTTTGAATAGACATACA-CGA-T-GGA------AAG-----CATCGCAGAGGTGGACGGTTTGCTGATTGCTGCGTAAGACAGCACTCACGATGTTGACGGAGTAGTGTAATGGTGgaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|3 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgcTGATAGCGGTTGAAGGATGTCTAACAGCTCAGAGATACAATGATGGAAT-CTTGGAATCATGATTTGTGTCCTGT-----C----GAA--G-A-C-GT-GACGCC-ACGTTGT--TTCAACCAG-ATAACATCAGA--TCGTCGGATTC--AGCCTGAATAACAT-----CTA---------------AGCAATTATGGAACCAGtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|4 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgccgcaagatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacaccccTTCACGAATCTATT--TCGTACTCCACTTACTTACTTATACACCCAATTATAGACCCCTTTT--------GTG----GAT-T-TGTGAAGGTCATCCACA-ACCCAT--TCTA--TTAGT----TTCATGAA---ATCTGT-----GC-GA--ACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGTGTGGTAGC-AT----TTCAATTA-TT--GGC-TTAAGGCT-TT--------GG---AAA-G---------ACAT----TCTTTACGTA---ATTGGA-----------CGCTTGAC--TATGCAGTCGTCATT-ATGGTAGCCTG-TGAAAT-GTCATATAA-----TTAGGTTGCGCTTAGAATGCACT--TCATTCCACAATCATG
gi|5 : ttctagaC--TTCACTACCATGCGATTAGTGAGACGACACCAAGAAACCGG-CTCTGC---T-GCT-GATTGTCCACG---TCA-AGGACGC-CAA--TTGTGAC-GTC-----TCGTCAACAAGACCGTC-ATATTGTCCTTACGCACCCCCGAGA-----------CAGCAACACGGACTGACCAGGAAGCAAGGGGATGTAACCAGCAACG--CATTAGCCGCTCTACCGAACGCCGACGTCAGTTAGATGCCGGAATTTC-AGCCCATTATCCATATAGGGGTAACGTATTGACACCAGAGAGGCGACGTAACAG-TGAGTTGTGGTGTCGTCTGCCTCAACGATGGta
gi|6 : tgttctcaTAAACGAGCGGGATGCCGTCCCACAATGCAGGACT-CAGCGTCTCATCCGCAGTATGAGGCGTATTTGCCAGTC-----TGT---AGTAG---AC-GCAAACGGCGGCCACACTTGTTACTGA-GTTTGCTGAACTCA-G--TTC-A----------------AATGCA-TAAAATCC------------------------------AT--TTGCT-C---TTTCATGA-AATA-TTTGTTGTT-A-G--T-ACCTGAGCATTATTTTAT-TTCAGTTTTGACATCCAAAAAGTAGAGCAGT-CTAAAAATATAATAAGTATATTACATGGTGCGTTTTCATTGACCGCCAGTATA
gi|7 : AATGAAAATGCCCCAAACTGACTT--TATATTATTTTCACCAATCAA--GAGCGTTCT----TTATTTACTTGTACGTCCA-------------TTTCAC----CTTG-CGTGAA-TATGTGAATGATG---AAT-TCCTTTGATCTAGTTTCGTGAACCTCGTG--CAAATCGTT-----A---ACA--CGCTG--------------CC-------ATGTGC----AC--------GTGGTAGTAATTAAATTC-GTAT-C-------TTGAGGCTGTTAAAA----GGC--CAA-GAA--C---AACCTTGCACAGGGACGTTTGAATGG-------------CGCCCAACGTAACGAAG-CGTCAGTGATGctgactttcaatttcataaaaaagggacgtg
gi|8 : ttgatacatttgtgtgaGATTACAACGTCTTATTCGTAGTATAACACG-----------C-----TGA---TACTG---ACTGCAAACGGTGGTCACATACGGCACTTA--TTTG-TGAACTTT-GATTTTAAC-CGTTC-GACA-TTGAAGGCAATAAAATTC--CATAAA---AAAGA--TCACATT-TC--AT--TTGTTTCTTATAT--TGGTCAT--TC----TTT-A-AACTACTCTTAAACTTAT----T-TTCAATTGTGACATATAAGA--TATAGCAGTATCGAAAA-ATAATGATTGCATTTCATGGTGC-TTCTCTTTGGCTGTCATTATAactattatcatgaagttgc
gi|9 : ctGTTGACTGCAGGAATTAA-TGTTCATGATCTATATAGGGGTCATGTGTTGACATCAGAGAGACGCCGTAACTG-TGA---GTAATGATGTCGACATCTGCGATGGATACAAGACCAATAG---GATGTTGTACCCATTGA-----TGA-------------------GTGCA-AG----GAATACGAAAAGTATAGCGTCGTAGAGGTGAGCGTTAATTTGAGTGCTCCGCCAGACAGCACGCACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGACAGCAAGCACAATGGGGGAAGGGCCTGAGTCATGGTGTGTGTTGGTGGTGTATTTTGGCAGCACAAAACACCCCTGATAGTGGTTGAAGGAGGCCTG
Alignments
lowQualScore : 1 1 111 22 5555555555555 1 111 44444444444444444444444444 66666666666666666666666666666666666666666666666666666666666666 11 444444444444444444444 555555555555555555555 2222 111 44444444444 1 111 11 333333333 3333333 1 2222222 1 2 111 111 1111 222222 11 2222 111 66666666666666666 2222222 1 77777777777777777777777 1 1 11 1 44444444444444 11 7777777777777777777777 1 1 1 777777777777777777777777 111 1 22 1 1111 44444444444444444 444444444444444444444444444444 11 111 11 11 11111111 11111111 11 1111
lowQualScore : 5 1 1 6 3 6 1 333 9 3 55 1 6 22 5 1 8 3 0 1111111111111 0 8 8 0 444 33333333333333333333333333 0 11111111111111111111111111111111111111111111111111111111111111 66 777777777777777777777 1 0 6 3 444444444444444444444 3 1 1111 777 0 2 77777777777 2 2 1 6 0 666 44 444444444 88 0 0 4444444 0 3 1 1 0 0 8888888 0 0 55 777 222 1 8 3333 8 111111 8 22 1 0 0 1 33 1 1 1 0 999 8 22 0 1 0 8888 111 1 1 1 3 5 44 1 44444444444444444 22 1 0000000 5 1 22 0 0 1 1 00 8 0 3 0 3 11 1 0 0 44 2 00000000000000000000000 0 22 0 44 33 1 0 66666666666666 88 0000000000000000000000 1 5 1 1 0 0 5 1 5 33333 111111111111111111111111 0 777 0 3 9 1 55 0 4444 11111111111111111 9 555555555555555555555555555555 11 0 444 11 11 88888888 55555555 5 0 0 3 8 0 1 0 66 5 0 0 4444 1 0 5 1
lowQualScore : . . . . . . . ... . . .. . . .. . . . . . ............. . . . . ... .......................... . .............................................................. .. ..................... . . . . ..................... . . .... ... . . ........... . . . . . ... .. ......... .. . . ....... . . . . . . ....... . . .. ... ... . . .... . ...... . .. . . . . .. . . . . ... . .. . . . .... ... . . . . . .. . ................. .. . ....... . . .. . . . . .. . . . . . .. . . . .. . ....................... . .. . .. .. . . .............. .. ...................... . . . . . . . . . ..... ........................ . ... . . . . .. . .... ................. . .............................. .. . ... .. .. ........ ........ . . . . . . . . .. . . . .... . . . .
lowQualScore : 5 0 0 7 3 7 0 888 0 8 44 4 4 44 6 0 2 8 8 4444444444444 8 0 0 6 000 88888888888888888888888888 2 00000000000000000000000000000000000000000000000000000000000000 55 888888888888888888888 2 2 5 2 555555555555555555555 2 0 2222 555 2 5 55555555555 0 5 2 5 0 777 00 000000000 00 7 7 7777777 2 7 0 0 2 0 8888888 0 0 88 555 666 0 0 0000 0 444444 0 22 0 6 2 0 88 2 0 0 2 666 2 22 8 0 8 6666 777 0 0 4 8 6 44 0 00000000000000000 00 4 8888888 0 0 22 6 6 4 4 55 8 3 2 2 7 55 0 0 2 55 5 88888888888888888888888 0 88 0 55 88 0 0 77777777777777 33 7777777777777777777777 0 5 0 0 7 7 0 0 5 88888 222222222222222222222222 2 555 0 2 8 0 00 0 0000 00000000000000000 8 444444444444444444444444444444 00 8 000 00 88 44444444 22222222 0 8 8 2 0 8 4 8 44 6 6 8 0000 0 8 0 0
consensus : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA-C---CAACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACATT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
Reference ( family-710 ) : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA-----CAACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACATT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
gi|1 : AACTATAC-CAATGAAAATGCACAAAA-TG-TTTGGCTTATTAGTTTCAGTTACCCATT--TCGTTATTTACTTTTTTACATATAAACAAACTTATTGATCGCTTTTCAATGA-CATGACGTGAT-T-TGAGAAGGACATCCGCT-GCCCATG------------------------CAAATCGTTATTTTGCTGACAATCCTTTTTAT--T-ATGAA-CCAGATA-AATGTAC----AC--------GTGGTGG--AT----TTC-ATAA-CT--GAGCTTTATATTATTAAAATTTCGAC--AAAAGAATT---CAACTT----CATTTACGTT---ATAGGA-----------CGCCCAACGTCATGAAGCCGTCAGT-ATGGTAGCC-G-GGAGATAGTCATATATCG---TT--GTTGCACACAGTATGCATTGTTC--TCCACTATCATGCAGTTAGTTAGGCGACACCAAGCAACCGG-CTCT-C---TTGCT-GATAGTCCACG---TCC-AGGACGC-CAA-AGTATGAC-ATC-----TCGTCAGCAAGACCACC-ACACTGTCCTTACGCACCTCCGAGATCGCTTTCAGACAACAACACGGACTGCCCAGGAAGCAAGGGGATATAAGCAGTAACG--CATAAATAGCTCCACCATGCGTCGACGCCTGTAAGATGCAGGCATTTC-AGCCTATGTTCCATATCGGGGTAACGTATTGACATCAGAGAGGCGACGTAAT-ACTGA---GTTGTGTCGTCGG-ATCTACGATGGACGCAAAATCAGTGGAAAGGTGTTCTTTTCACTGA-----CGAGTTCAGGTTTTGTATAGATATTCT-GGATT-GGGGGCGTAAGGTGTGGCGTCTCCGAGGCGAGCGTTACGCAGATTGCTGCGTCAAACAGCATGCACGGTGGGGA-GTGGCAGTGTAATGGTGATGGCAGGTAGTCTGACGGCTCGAAGATACGTTGACGAAAT-CTTGGAACCATGTATTATACCCT-TTCTTCC----AAAT-C-ACC-AT-GTCGTC-ACGCAAT--TTCAGCAGG-ACAACGCTGGGCCAC-T----TTC--AGCCAGAATAACGT--AAG--ACCTGAGCCCT-ATTGAGCATTTATGGCACCAGC-TCGGCGGCGAGTGTACAATGGACGTCACGTCATCAACAACAAGGCACAGTTAGTGCAGACACTGTTAGAC-AGTGGGATGCCATGCCACAATACAGGATT-CAGCGTCTCATCCACAGTA------------------------TGA---GGCCG---AC-GCAAACGGCGGCCAC-T-CGCTACTGAGGTTTG-TGAACTTTCAGTTTC-AC-C-CTCTTTCATT-TAGGCATTAAAATTCAGCTCAAATGCA---A--TAACA-T-CC--AT--TTGCTTT---TAA--TGA-AATA-TT----GTT-GTAAGT-CCCTGAACATTATTTAAT-TTCAGTTTTGACATCCAAAAAGAAGAGCAG-ACTAAAAATAGAATAAGTATATTTCATGGTGCGTTTTCATTGACCGCCAGTATA
gi|10 : c---GTGGTGTCGTCGGCATCTAAGATGAACACAAAATCATTGGAA---------------T-----------T----GTTTTGTTTAGATGTGCATCCA-A-GAAGGCGTAAAGTGTGGCATCGCCGAGGTGAGCGTTACGTAGATTGCTGCGTCAGACAGCATGCACGGTGGGGACGGGGTTGTGTAATGGT-GTGGaatataagactcctaaacagacgtttg
gi|11 : gtaaccgtcagttAAA---T---A--TCACA-T-TTCGAC--ATGCTTC---TAT--TG--AATAGTC----GTT-A-AAAC-TTTTAAACATTATTTCATGTTTAATTTTGATAT-GAAAAAGTATAGCAGTATCAAATATATACTGATTATTTTTGATGATGTTTTTATATTGACAGTCGTTACAgccggtataccactgcaccacagaacacacctggtagtggttgcaggcagtctga
gi|12 : GAAACCAAGCAATAGGTCTTT-TGAGT-GCT-GGC-GTC-ACGAAATCCGACGTCGCACAACAGTTTAACTGTA-----GTGTCAGCAGGAT-GCTTACATTAGACTCTCGCACCTCCGGAATCGCTTACGACAAGCAACAACAACGGCCCGGtg
gi|13 : TTTCAACGATCTATT--TCATACTCCACTTACTTACTAATACACCCAATTATAGA-CTCT------------TG-CGTGATAT-TGTGAAGGGCATCCACT-ACCCATTTTCTAGATTCACGAATCT
gi|15 : ttttttTGACAGGTCATTGATACATTAATGAAATTCTTAGAACCATGCGCTGTGCCCT-T-----TCTGAGAAACC-A-CTAT-GACATC-ACATTGT--TTCAACAAG-ACAATGatt
gi|16 : CAAGTGTACAACGGACGTCACGTCATAAACAACAAGGCATAGTTGGTGCAGct
gi|2 : AATCATATTCAATAAAAATGCTTTAAACTG-CTTGGTTTGTCACTTT-ATT-ATC-ACTGATCGTTCTTCATTTATTCACGAATACACCCAATTATAGACCATTTTTCAAT-AACAT--TGTG-T-T-TTCGAAGGACG-CCACCTGCCCATGACCTAGTTTCGTGAACC--ATCAA-AAATCATT-----GCTGACGATCATGCATGT--T-ATGAC-CCAGACA-CATGCCA----AC--------GTTGCAGC-AT----TT---TAATCTCGGA--TTAAAGCTGTTAAAA---CGCCTAGAA-GAAACTTGCA-CAT----TATTTACGTT---ATGGGAAAATTTGATGCCGTTCAACGTTATTAAGCCGTCGGT-GTGGTTGCC-GGTGAAATA-TAATATGATGAGGTT--G-CGCACACAATGCGTAT---------CACTATCATGCCGTTAGTCAAGAGACAACTGGAAACTGG-CTCT-A---T-GGTCGAC-CTCC-CA---TCC---------CAG-AA-ATGGA-GTCGTGAACCATCAATAAGACCGGC-ATATTATCCTTACGCAACTCAGAGATTGCTTTCAAACAGCAACATGAAAT---CGGAAAGCAAGGGTAAACAAGCAGCAACG--CATTAGTCGATCAGTTGTACGCCGAAACTTTTTGGCTGCAGGAATTGACAGC----GG-------AGAGGTGATGGAT--GCAT------GGTGTCGT------TGA----------------CATTTACGATGGACACATTATCAGTGGAAAGGTATTTTATTCAC------------------TTTTGTACAGACATGTA-CGA-TGGAAGGTGTAAAGTATGGCGTCGCAAAGATAAACGGTATGTTGATTGGTGCGCAAGACAGCACGCACGATGAACAGTGGGTAGTGTTATTGT
gi|2 : acattaatatgtatTGATAGTAGTAGAAGGACGTCTGACAGCTCAGGAATAAAGCGATGAAAT-CTTTGAACCGCGCATTGTGC----------------AA--CAA-T-ATAGA--TCTACGCCCCCATTCGGCCAGAATAATAT----CCTAGT----TTCTGAGACAGAATAACGTTCAAGCTACT---GCTCTGGTCGAACATTTATGGGACCAGCTTTGTCGTCAGATGTGCAGCGGGCGTCACGTGACAAATAGCGAGGtcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|2 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatcccACAGCTTCTTAATTGCTATATGAGACG-----------CATATTTCAAACGGCCGTGAAC-GCAAATGGCGGCTACATACGGTACTGA--TTTG-TGAACTTT-GGATAC-ACGC-TTC-AACATTTAAGGCAATGAAATTC--CACAAA---A---ATCTCACA-TATC--ATTGTTTCTTC---TAT--TGA-GGTT-TC----GTTAA-AAAG-CTCTGAA-AC--TTTCAT-T----TTTTG---TT-------TATTGC-----------TATAATGAGTGTATGTAATGGTACGTTTTCACTGACCGagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|3 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaag-ACGATGT-CAA-AGAATGAT-GTC-----CCGACAGCAATACCGCC-ATTCTGTCCTTACGCACTTCCGAAATTGCTTTTAAAGAGCAACACGGACTGCGTAGGAAACAAAGGAATACAACCTGCAACGCACATCAGTCGATCAACTGTGCGTTAACGATTGTTGACTTCAAGAATTGA-AGAGCATGGTCCGTACAGGGGTAATTTATTGACCGCAGAGAAGCGCCGCAAG-A-TCA---GTGGttt
gi|3 : cgctcaagCGCAAGATCAGTGGGAAAGCGTGGTATTCGCTGATTAATCAA-T----GTTTTGAATAGACATACA-CGA-T-GGA------AAG-----CATCGCAGAGGTGGACGGTTTGCTGATTGCTGCGTAAGACAGCACTCACGATGTTGACGGAGTAGTGTAATGGTGgaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|3 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgcTGATAGCGGTTGAAGGATGTCTAACAGCTCAGAGATACAATGATGGAAT-CTTGGAATCATGATTTGTGTCCTGT-----C----GAA--G-A-C-GT-GACGCC-ACGTTGT--TTCAACCAG-ATAACATCAGA--TCGTCGGATTC--AGCCTGAATAACAT-----CTA---------------AGCAATTATGGAACCAGtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|4 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgccgcaagatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacaccccTTCACGAATCTATT--TCGTACTCCACTTACTTACTTATACACCCAATTATAGACCCCTTTT--------GTG----GAT-T-TGTGAAGGTCATCCACA-ACCCAT--TCTA--TTAGT----TTCATGAA---ATCTGT-----GC-GA--ACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGTGTGGTAGC-AT----TTCAATTA-TT--GGC-TTAAGGCT-TT--------GG---AAA-G---------ACAT----TCTTTACGTA---ATTGGA-----------CGCTTGAC--TATGCAGTCGTCATT-ATGGTAGCCTG-TGAAAT-GTCATATAA-----TTAGGTTGCGCTTAGAATGCACT--TCATTCCACAATCATG
gi|5 : ttctagaC--TTCACTACCATGCGATTAGTGAGACGACACCAAGAAACCGG-CTCTGC---T-GCT-GATTGTCCACG---TCA-AGGACGC-CAA--TTGTGAC-GTC-----TCGTCAACAAGACCGTC-ATATTGTCCTTACGCACCCCCGAGA-----------CAGCAACACGGACTGACCAGGAAGCAAGGGGATGTAACCAGCAACG--CATTAGCCGCTCTACCGAACGCCGACGTCAGTTAGATGCCGGAATTTC-AGCCCATTATCCATATAGGGGTAACGTATTGACACCAGAGAGGCGACGTAACAG-TGAGTTGTGGTGTCGTCTGCCTCAACGATGGta
gi|6 : tgttctcaTAAACGAGCGGGATGCCGTCCCACAATGCAGGACT-CAGCGTCTCATCCGCAGTATGAGGCGTATTTGCCAGTC-----TGT---AGTAG---AC-GCAAACGGCGGCCACACTTGTTACTGA-GTTTGCTGAACTCA-G--TTC-A---------------AATGCA-TAAAATCC------------------------------AT--TTGCT-C---TTTCATGA-AATA-TTTGTTGTT-A-G--T-ACCTGAGCATTATTTTAT-TTCAGTTTTGACATCCAAAAAGTAGAGCAGT-CTAAAAATATAATAAGTATATTACATGGTGCGTTTTCATTGACCGCCAGTATA
gi|7 : AATGAAAATGCCCCAAACTGACTT--TATATTATTTTCACCAATCAA--GAGCGTTCT----TTATTTACTTGTACGTCCA-------------TTTCAC----CTTG-CGTGAA-TATGTGAATGATG---AAT-TCCTTTGATCTAGTTTCGTGAACCTCGTG--CAAATCGTT-----A---ACA--CGCTG--------------CC-------ATGTGC----AC--------GTGGTAGTAATTAAATTC-GTAT-C-------TTGAGGCTGTTAAAA----GGC--CAA-GAA-----CAACCTTGCACAGGGACGTTTGAATGG-------------CGCCCAACGTAACGAAG-CGTCAGTGATGctgactttcaatttcataaaaaagggacgtg
gi|8 : ttgatacatttgtgtgaGATTACAACGTCTTATTCGTAGTATAACACG-----------C-----TGA---TACTG---ACTGCAAACGGTGGTCACATACGGCACTTA--TTTG-TGAACTTT-GATTTTAAC-CGTTC-GACATTGAAGGCAATAAAATTC--CATAAA---AAAGA--TCACATT-TC--AT--TTGTTTCTTATAT--TGGTCAT--TC----TTT-A-AACTACTCTTAAACTTAT----T-TTCAATTGTGACATATAAGA--TATAGCAGTATCGAAAA-ATAATGATTGCATTTCATGGTGC-TTCTCTTTGGCTGTCATTATAactattatcatgaagttgc
gi|9 : ctGTTGACTGCAGGAATTAA-TGTTCATGATCTATATAGGGGTCATGTGTTGACATCAGAGAGACGCCGTAACTG-TGA---GTAATGATGTCGACATCTGCGATGGATACAAGACCAATAG---GATGTTGTACCCATTGA-----TGA-------------------GTGCA-AG----GAATACGAAAAGTATAGCGTCGTAGAGGTGAGCGTTAATTTGAGTGCTCCGCCAGACAGCACGCACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGACAGCAAGCACAATGGGGGAAGGGCCTGAGTCATGGTGTGTGTTGGTGGTGTATTTTGGCAGCACAAAACACCCCTGATAGTGGTTGAAGGAGGCCTG
Alignments
lowQualScore : 1 1 111 22 5555555555555 1 111 44444444444444444444444444 66666666666666666666666666666666666666666666666666666666666666 11 444444444444444444444 66666666666666666666666 2222 111 44444444444 1 111 11 333333333 3333333 1 2222222 1 2 111 111 1111 222222 11 2222 111 66666666666666666 2222222 1 77777777777777777777777 1 1 11 1 44444444444444 11 7777777777777777777777 1 1 1 777777777777777777777777 111 1 22 1 1111 444444444444444444 444444444444444444444444444444 11 111 11 11 11111111 11111111 11 1111
lowQualScore : 5 1 1 6 3 6 1 333 9 3 55 1 6 22 5 1 8 3 0 1111111111111 0 8 8 0 444 33333333333333333333333333 0 11111111111111111111111111111111111111111111111111111111111111 66 777777777777777777777 1 0 6 3 11111111111111111111111 1 1111 777 0 2 77777777777 2 2 1 6 0 666 44 444444444 88 0 0 4444444 0 3 1 1 0 0 8888888 0 0 55 777 222 1 8 3333 8 111111 8 22 1 0 0 1 33 1 1 1 0 999 8 22 0 1 0 8888 111 1 1 1 3 5 44 1 44444444444444444 22 1 0000000 5 1 22 0 0 1 1 00 8 0 3 0 3 11 1 0 0 44 2 00000000000000000000000 0 22 0 44 33 1 0 66666666666666 88 0000000000000000000000 1 5 1 1 0 0 5 1 5 33333 111111111111111111111111 0 777 0 3 9 1 55 0 4444 111111111111111111 9 555555555555555555555555555555 11 0 444 11 11 88888888 55555555 5 0 0 3 8 0 1 0 66 5 0 0 4444 1 0 5 1
lowQualScore : . . . . . . . ... . . .. . . .. . . . . . ............. . . . . ... .......................... . .............................................................. .. ..................... . . . . ....................... . .... ... . . ........... . . . . . ... .. ......... .. . . ....... . . . . . . ....... . . .. ... ... . . .... . ...... . .. . . . . .. . . . . ... . .. . . . .... ... . . . . . .. . ................. .. . ....... . . .. . . . . .. . . . . . .. . . . .. . ....................... . .. . .. .. . . .............. .. ...................... . . . . . . . . . ..... ........................ . ... . . . . .. . .... .................. . .............................. .. . ... .. .. ........ ........ . . . . . . . . .. . . . .... . . . .
lowQualScore : 5 0 0 7 3 7 0 888 0 8 44 4 4 44 6 0 2 8 8 4444444444444 8 0 0 6 000 88888888888888888888888888 2 00000000000000000000000000000000000000000000000000000000000000 55 888888888888888888888 2 2 5 2 55555555555555555555555 0 2222 555 2 5 55555555555 0 5 2 5 0 777 00 000000000 00 7 7 7777777 2 7 0 0 2 0 8888888 0 0 88 555 666 0 0 0000 0 444444 0 22 0 6 2 0 88 2 0 0 2 666 2 22 8 0 8 6666 777 0 0 4 8 6 44 0 00000000000000000 00 4 8888888 0 0 22 6 6 4 4 55 8 3 2 2 7 55 0 0 2 55 5 88888888888888888888888 0 88 0 55 88 0 0 77777777777777 33 7777777777777777777777 0 5 0 0 7 7 0 0 5 88888 222222222222222222222222 2 555 0 2 8 0 00 0 0000 000000000000000000 8 444444444444444444444444444444 00 8 000 00 88 44444444 22222222 0 8 8 2 0 8 4 8 44 6 6 8 0000 0 8 0 0
consensus : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA--C---AACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACA-TT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
Reference ( family-710 ) : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAAC-C---AACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACA-TT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
gi|1 : AACTATAC-CAATGAAAATGCACAAAA-TG-TTTGGCTTATTAGTTTCAGTTACCCATT--TCGTTATTTACTTTTTTACATATAAACAAACTTATTGATCGCTTTTCAATGA-CATGACGTGAT-T-TGAGAAGGACATCCGCT-GCCCATG------------------------CAAATCGTTATTTTGCTGACAATCCTTTTTAT--T-ATGAA-CCAGATA-AATGTAC----AC--------GTGGTGG--AT----TTC-ATAA-CT--GAGCTTTATATTATTAAAATTTCGAC--AAAAGAATTC---AACTT----CATTTACGTT---ATAGGA-----------CGCCCAACGTCATGAAGCCGTCAGT-ATGGTAGCC-G-GGAGATAGTCATATATCG---TT--GTTGCACACAGTATGCATTGTTC--TCCACTATCATGCAGTTAGTTAGGCGACACCAAGCAACCGG-CTCT-C---TTGCT-GATAGTCCACG---TCC-AGGACGC-CAA-AGTATGAC-ATC-----TCGTCAGCAAGACCACC-ACACTGTCCTTACGCACCTCCGAGATCGCTTTCAGACAACAACACGGACTGCCCAGGAAGCAAGGGGATATAAGCAGTAACG--CATAAATAGCTCCACCATGCGTCGACGCCTGTAAGATGCAGGCATTTC-AGCCTATGTTCCATATCGGGGTAACGTATTGACATCAGAGAGGCGACGTAAT-ACTGA---GTTGTGTCGTCGG-ATCTACGATGGACGCAAAATCAGTGGAAAGGTGTTCTTTTCACTGA-----CGAGTTCAGGTTTTGTATAGATATTCT-GGATT-GGGGGCGTAAGGTGTGGCGTCTCCGAGGCGAGCGTTACGCAGATTGCTGCGTCAAACAGCATGCACGGTGGGGA-GTGGCAGTGTAATGGTGATGGCAGGTAGTCTGACGGCTCGAAGATACGTTGACGAAAT-CTTGGAACCATGTATTATACCCT-TTCTTCC----AAAT-C-ACC-AT-GTCGTC-ACGCAAT--TTCAGCAGG-ACAACGCTGGGCCAC-T----TTC--AGCCAGAATAACGT--AAG--ACCTGAGCCCT-ATTGAGCATTTATGGCACCAGC-TCGGCGGCGAGTGTACAATGGACGTCACGTCATCAACAACAAGGCACAGTTAGTGCAGACACTGTTAGAC-AGTGGGATGCCATGCCACAATACAGGATT-CAGCGTCTCATCCACAGTA------------------------TGA---GGCCG---AC-GCAAACGGCGGCCAC-T-CGCTACTGAGGTTTG-TGAACTTTCAGTTTC-AC-C-CTCTTTCA-TT-TAGGCATTAAAATTCAGCTCAAATGCA---A--TAACA-T-CC--AT--TTGCTTT---TAA--TGA-AATA-TT----GTT-GTAAGT-CCCTGAACATTATTTAAT-TTCAGTTTTGACATCCAAAAAGAAGAGCAG-ACTAAAAATAGAATAAGTATATTTCATGGTGCGTTTTCATTGACCGCCAGTATA
gi|10 : c---GTGGTGTCGTCGGCATCTAAGATGAACACAAAATCATTGGAA---------------T-----------T----GTTTTGTTTAGATGTGCATCCA-A-GAAGGCGTAAAGTGTGGCATCGCCGAGGTGAGCGTTACGTAGATTGCTGCGTCAGACAGCATGCACGGTGGGGACGGGGTTGTGTAATGGT-GTGGaatataagactcctaaacagacgtttg
gi|11 : gtaaccgtcagttAAA---T---A--TCACA-T-TTCGAC--ATGCTTC---TAT--TG--AATAGTC----GTT-A-AAAC-TTTTAAACATTATTTCATGTTTAATTTTGATAT-GAAAAAGTATAGCAGTATCAAATATATACTGATTATTTTTGATGATGTTTTTATATTGACAGTCGTTACAgccggtataccactgcaccacagaacacacctggtagtggttgcaggcagtctga
gi|12 : GAAACCAAGCAATAGGTCTTT-TGAGT-GCT-GGC-GTC-ACGAAATCCGACGTCGCACAACAGTTTAACTGTA-----GTGTCAGCAGGAT-GCTTACATTAGACTCTCGCACCTCCGGAATCGCTTACGACAAGCAACAACAACGGCCCGGtg
gi|13 : TTTCAACGATCTATT--TCATACTCCACTTACTTACTAATACACCCAATTATAGA-CTCT------------TG-CGTGATAT-TGTGAAGGGCATCCACT-ACCCATTTTCTAGATTCACGAATCT
gi|15 : ttttttTGACAGGTCATTGATACATTAATGAAATTCTTAGAACCATGCGCTGTGCCCT-T-----TCTGAGAAACC-A-CTAT-GACATC-ACATTGT--TTCAACAAG-ACAATGatt
gi|16 : CAAGTGTACAACGGACGTCACGTCATAAACAACAAGGCATAGTTGGTGCAGct
gi|2 : AATCATATTCAATAAAAATGCTTTAAACTG-CTTGGTTTGTCACTTT-ATT-ATC-ACTGATCGTTCTTCATTTATTCACGAATACACCCAATTATAGACCATTTTTCAAT-AACAT--TGTG-T-T-TTCGAAGGACG-CCACCTGCCCATGACCTAGTTTCGTGAACC--ATCAA-AAATCATT-----GCTGACGATCATGCATGT--T-ATGAC-CCAGACA-CATGCCA----AC--------GTTGCAGC-AT----TT---TAATCTCGGA--TTAAAGCTGTTAAAA---CGCCTAGAA-GAAA-CTTGCACAT----TATTTACGTT---ATGGGAAAATTTGATGCCGTTCAACGTTATTAAGCCGTCGGT-GTGGTTGCC-GGTGAAATA-TAATATGATGAGGTT--G-CGCACACAATGCGTAT---------CACTATCATGCCGTTAGTCAAGAGACAACTGGAAACTGG-CTCT-A---T-GGTCGAC-CTCC-CA---TCC---------CAG-AA-ATGGA-GTCGTGAACCATCAATAAGACCGGC-ATATTATCCTTACGCAACTCAGAGATTGCTTTCAAACAGCAACATGAAAT---CGGAAAGCAAGGGTAAACAAGCAGCAACG--CATTAGTCGATCAGTTGTACGCCGAAACTTTTTGGCTGCAGGAATTGACAGC----GG-------AGAGGTGATGGAT--GCAT------GGTGTCGT------TGA----------------CATTTACGATGGACACATTATCAGTGGAAAGGTATTTTATTCAC------------------TTTTGTACAGACATGTA-CGA-TGGAAGGTGTAAAGTATGGCGTCGCAAAGATAAACGGTATGTTGATTGGTGCGCAAGACAGCACGCACGATGAACAGTGGGTAGTGTTATTGT
gi|2 : acattaatatgtatTGATAGTAGTAGAAGGACGTCTGACAGCTCAGGAATAAAGCGATGAAAT-CTTTGAACCGCGCATTGTGC----------------AA--CAA-T-ATAGA--TCTACGCCCCCATTCGGCCAGAATAATAT----CCTAGT----TTCTGAGACAGAATAACGTTCAAGCTACT---GCTCTGGTCGAACATTTATGGGACCAGCTTTGTCGTCAGATGTGCAGCGGGCGTCACGTGACAAATAGCGAGGtcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|2 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatcccACAGCTTCTTAATTGCTATATGAGACG-----------CATATTTCAAACGGCCGTGAAC-GCAAATGGCGGCTACATACGGTACTGA--TTTG-TGAACTTT-GGATAC-ACGC-TTC-AACATTT-AAGGCAATGAAATTC--CACAAA---A---ATCTCACA-TATC--ATTGTTTCTTC---TAT--TGA-GGTT-TC----GTTAA-AAAG-CTCTGAA-AC--TTTCAT-T----TTTTG---TT-------TATTGC-----------TATAATGAGTGTATGTAATGGTACGTTTTCACTGACCGagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|3 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaag-ACGATGT-CAA-AGAATGAT-GTC-----CCGACAGCAATACCGCC-ATTCTGTCCTTACGCACTTCCGAAATTGCTTTTAAAGAGCAACACGGACTGCGTAGGAAACAAAGGAATACAACCTGCAACGCACATCAGTCGATCAACTGTGCGTTAACGATTGTTGACTTCAAGAATTGA-AGAGCATGGTCCGTACAGGGGTAATTTATTGACCGCAGAGAAGCGCCGCAAG-A-TCA---GTGGttt
gi|3 : cgctcaagCGCAAGATCAGTGGGAAAGCGTGGTATTCGCTGATTAATCAA-T----GTTTTGAATAGACATACA-CGA-T-GGA------AAG-----CATCGCAGAGGTGGACGGTTTGCTGATTGCTGCGTAAGACAGCACTCACGATGTTGACGGAGTAGTGTAATGGTGgaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|3 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgcTGATAGCGGTTGAAGGATGTCTAACAGCTCAGAGATACAATGATGGAAT-CTTGGAATCATGATTTGTGTCCTGT-----C----GAA--G-A-C-GT-GACGCC-ACGTTGT--TTCAACCAG-ATAACATCAGA--TCGTCGGATTC--AGCCTGAATAACAT-----CTA---------------AGCAATTATGGAACCAGtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|4 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgccgcaagatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacaccccTTCACGAATCTATT--TCGTACTCCACTTACTTACTTATACACCCAATTATAGACCCCTTTT--------GTG----GAT-T-TGTGAAGGTCATCCACA-ACCCAT--TCTA--TTAGT----TTCATGAA---ATCTGT-----GC-GA--ACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGTGTGGTAGC-AT----TTCAATTA-TT--GGC-TTAAGGCT-TT--------GG---AAA-G---------ACAT----TCTTTACGTA---ATTGGA-----------CGCTTGAC--TATGCAGTCGTCATT-ATGGTAGCCTG-TGAAAT-GTCATATAA-----TTAGGTTGCGCTTAGAATGCACT--TCATTCCACAATCATG
gi|5 : ttctagaC--TTCACTACCATGCGATTAGTGAGACGACACCAAGAAACCGG-CTCTGC---T-GCT-GATTGTCCACG---TCA-AGGACGC-CAA--TTGTGAC-GTC-----TCGTCAACAAGACCGTC-ATATTGTCCTTACGCACCCCCGAGA-----------CAGCAACACGGACTGACCAGGAAGCAAGGGGATGTAACCAGCAACG--CATTAGCCGCTCTACCGAACGCCGACGTCAGTTAGATGCCGGAATTTC-AGCCCATTATCCATATAGGGGTAACGTATTGACACCAGAGAGGCGACGTAACAG-TGAGTTGTGGTGTCGTCTGCCTCAACGATGGta
gi|6 : tgttctcaTAAACGAGCGGGATGCCGTCCCACAATGCAGGACT-CAGCGTCTCATCCGCAGTATGAGGCGTATTTGCCAGTC-----TGT---AGTAG---AC-GCAAACGGCGGCCACACTTGTTACTGA-GTTTGCTGAACTCA-G--TTC-A----------------AATGCA-TAAAATCC------------------------------AT--TTGCT-C---TTTCATGA-AATA-TTTGTTGTT-A-G--T-ACCTGAGCATTATTTTAT-TTCAGTTTTGACATCCAAAAAGTAGAGCAGT-CTAAAAATATAATAAGTATATTACATGGTGCGTTTTCATTGACCGCCAGTATA
gi|7 : AATGAAAATGCCCCAAACTGACTT--TATATTATTTTCACCAATCAA--GAGCGTTCT----TTATTTACTTGTACGTCCA-------------TTTCAC----CTTG-CGTGAA-TATGTGAATGATG---AAT-TCCTTTGATCTAGTTTCGTGAACCTCGTG--CAAATCGTT-----A---ACA--CGCTG--------------CC-------ATGTGC----AC--------GTGGTAGTAATTAAATTC-GTAT-C-------TTGAGGCTGTTAAAA----GGC--CAA-GAA--C---AACCTTGCACAGGGACGTTTGAATGG-------------CGCCCAACGTAACGAAG-CGTCAGTGATGctgactttcaatttcataaaaaagggacgtg
gi|8 : ttgatacatttgtgtgaGATTACAACGTCTTATTCGTAGTATAACACG-----------C-----TGA---TACTG---ACTGCAAACGGTGGTCACATACGGCACTTA--TTTG-TGAACTTT-GATTTTAAC-CGTTC-GACA-TTGAAGGCAATAAAATTC--CATAAA---AAAGA--TCACATT-TC--AT--TTGTTTCTTATAT--TGGTCAT--TC----TTT-A-AACTACTCTTAAACTTAT----T-TTCAATTGTGACATATAAGA--TATAGCAGTATCGAAAA-ATAATGATTGCATTTCATGGTGC-TTCTCTTTGGCTGTCATTATAactattatcatgaagttgc
gi|9 : ctGTTGACTGCAGGAATTAA-TGTTCATGATCTATATAGGGGTCATGTGTTGACATCAGAGAGACGCCGTAACTG-TGA---GTAATGATGTCGACATCTGCGATGGATACAAGACCAATAG---GATGTTGTACCCATTGA-----TGA-------------------GTGCA-AG----GAATACGAAAAGTATAGCGTCGTAGAGGTGAGCGTTAATTTGAGTGCTCCGCCAGACAGCACGCACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGACAGCAAGCACAATGGGGGAAGGGCCTGAGTCATGGTGTGTGTTGGTGGTGTATTTTGGCAGCACAAAACACCCCTGATAGTGGTTGAAGGAGGCCTG
Alignments
lowQualScore : 1 1 111 22 5555555555555 1 111 44444444444444444444444444 66666666666666666666666666666666666666666666666666666666666666 11 444444444444444444444 555555555555555555555 2222 111 44444444444 1 111 11 333333333 3333333 1 2222222 1 2 111 111 1111 222222 11 2222 111 66666666666666666 2222222 1 77777777777777777777777 1 1 11 1 44444444444444 11 7777777777777777777777 1 1 1 777777777777777777777777 111 1 22 1 1111 44444444444444444 444444444444444444444444444444 11 111 11 11 11111111 11111111 11 1111
lowQualScore : 5 1 1 6 3 6 1 333 9 3 55 1 6 22 5 1 8 3 0 1111111111111 0 8 8 0 444 33333333333333333333333333 0 11111111111111111111111111111111111111111111111111111111111111 66 777777777777777777777 1 0 6 3 444444444444444444444 3 1 1111 777 0 2 77777777777 2 2 1 6 0 666 44 444444444 88 0 0 4444444 0 3 1 1 0 0 8888888 0 0 55 777 222 1 8 3333 8 111111 8 22 1 0 0 1 33 1 1 1 0 999 8 22 0 1 0 8888 111 1 1 1 3 5 44 1 44444444444444444 22 1 0000000 5 1 22 0 0 1 1 00 8 0 3 0 3 11 1 0 0 44 2 00000000000000000000000 0 22 0 44 33 1 0 66666666666666 88 0000000000000000000000 1 5 1 1 0 0 5 1 5 33333 111111111111111111111111 0 777 0 3 9 1 55 0 4444 11111111111111111 9 555555555555555555555555555555 11 0 444 11 11 88888888 55555555 5 0 0 3 8 0 1 0 66 5 0 0 4444 1 0 5 1
lowQualScore : . . . . . . . ... . . .. . . .. . . . . . ............. . . . . ... .......................... . .............................................................. .. ..................... . . . . ..................... . . .... ... . . ........... . . . . . ... .. ......... .. . . ....... . . . . . . ....... . . .. ... ... . . .... . ...... . .. . . . . .. . . . . ... . .. . . . .... ... . . . . . .. . ................. .. . ....... . . .. . . . . .. . . . . . .. . . . .. . ....................... . .. . .. .. . . .............. .. ...................... . . . . . . . . . ..... ........................ . ... . . . . .. . .... ................. . .............................. .. . ... .. .. ........ ........ . . . . . . . . .. . . . .... . . . .
lowQualScore : 5 0 0 7 3 7 0 888 0 8 44 4 4 44 6 0 2 8 8 4444444444444 8 0 0 6 000 88888888888888888888888888 2 00000000000000000000000000000000000000000000000000000000000000 55 888888888888888888888 2 2 5 2 555555555555555555555 2 0 2222 555 2 5 55555555555 0 5 2 5 0 777 00 000000000 00 7 7 7777777 2 7 0 0 2 0 8888888 0 0 88 555 666 0 0 0000 0 444444 0 22 0 6 2 0 88 2 0 0 2 666 2 22 8 0 8 6666 777 0 0 4 8 6 44 0 00000000000000000 00 4 8888888 0 0 22 6 6 4 4 55 8 3 2 2 7 55 0 0 2 55 5 88888888888888888888888 0 88 0 55 88 0 0 77777777777777 33 7777777777777777777777 0 5 0 0 7 7 0 0 5 88888 222222222222222222222222 2 555 0 2 8 0 00 0 0000 00000000000000000 8 444444444444444444444444444444 00 8 000 00 88 44444444 22222222 0 8 8 2 0 8 4 8 44 6 6 8 0000 0 8 0 0
consensus : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA-C---CAACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACATT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
Reference ( family-710 ) : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA-----CAACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACATT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
gi|1 : AACTATAC-CAATGAAAATGCACAAAA-TG-TTTGGCTTATTAGTTTCAGTTACCCATT--TCGTTATTTACTTTTTTACATATAAACAAACTTATTGATCGCTTTTCAATGA-CATGACGTGAT-T-TGAGAAGGACATCCGCT-GCCCATG------------------------CAAATCGTTATTTTGCTGACAATCCTTTTTAT--T-ATGAA-CCAGATA-AATGTAC----AC--------GTGGTGG--AT----TTC-ATAA-CT--GAGCTTTATATTATTAAAATTTCGAC--AAAAGAATT---CAACTT----CATTTACGTT---ATAGGA-----------CGCCCAACGTCATGAAGCCGTCAGT-ATGGTAGCC-G-GGAGATAGTCATATATCG---TT--GTTGCACACAGTATGCATTGTTC--TCCACTATCATGCAGTTAGTTAGGCGACACCAAGCAACCGG-CTCT-C---TTGCT-GATAGTCCACG---TCC-AGGACGC-CAA-AGTATGAC-ATC-----TCGTCAGCAAGACCACC-ACACTGTCCTTACGCACCTCCGAGATCGCTTTCAGACAACAACACGGACTGCCCAGGAAGCAAGGGGATATAAGCAGTAACG--CATAAATAGCTCCACCATGCGTCGACGCCTGTAAGATGCAGGCATTTC-AGCCTATGTTCCATATCGGGGTAACGTATTGACATCAGAGAGGCGACGTAAT-ACTGA---GTTGTGTCGTCGG-ATCTACGATGGACGCAAAATCAGTGGAAAGGTGTTCTTTTCACTGA-----CGAGTTCAGGTTTTGTATAGATATTCT-GGATT-GGGGGCGTAAGGTGTGGCGTCTCCGAGGCGAGCGTTACGCAGATTGCTGCGTCAAACAGCATGCACGGTGGGGA-GTGGCAGTGTAATGGTGATGGCAGGTAGTCTGACGGCTCGAAGATACGTTGACGAAAT-CTTGGAACCATGTATTATACCCT-TTCTTCC----AAAT-C-ACC-AT-GTCGTC-ACGCAAT--TTCAGCAGG-ACAACGCTGGGCCAC-T----TTC--AGCCAGAATAACGT--AAG--ACCTGAGCCCT-ATTGAGCATTTATGGCACCAGC-TCGGCGGCGAGTGTACAATGGACGTCACGTCATCAACAACAAGGCACAGTTAGTGCAGACACTGTTAGAC-AGTGGGATGCCATGCCACAATACAGGATT-CAGCGTCTCATCCACAGTA------------------------TGA---GGCCG---AC-GCAAACGGCGGCCAC-T-CGCTACTGAGGTTTG-TGAACTTTCAGTTTC-AC-C-CTCTTTCATT-TAGGCATTAAAATTCAGCTCAAATGCA---A--TAACA-T-CC--AT--TTGCTTT---TAA--TGA-AATA-TT----GTT-GTAAGT-CCCTGAACATTATTTAAT-TTCAGTTTTGACATCCAAAAAGAAGAGCAG-ACTAAAAATAGAATAAGTATATTTCATGGTGCGTTTTCATTGACCGCCAGTATA
gi|10 : c---GTGGTGTCGTCGGCATCTAAGATGAACACAAAATCATTGGAA---------------T-----------T----GTTTTGTTTAGATGTGCATCCA-A-GAAGGCGTAAAGTGTGGCATCGCCGAGGTGAGCGTTACGTAGATTGCTGCGTCAGACAGCATGCACGGTGGGGACGGGGTTGTGTAATGGT-GTGGaatataagactcctaaacagacgtttg
gi|11 : gtaaccgtcagttAAA---T---A--TCACA-T-TTCGAC--ATGCTTC---TAT--TG--AATAGTC----GTT-A-AAAC-TTTTAAACATTATTTCATGTTTAATTTTGATAT-GAAAAAGTATAGCAGTATCAAATATATACTGATTATTTTTGATGATGTTTTTATATTGACAGTCGTTACAgccggtataccactgcaccacagaacacacctggtagtggttgcaggcagtctga
gi|12 : GAAACCAAGCAATAGGTCTTT-TGAGT-GCT-GGC-GTC-ACGAAATCCGACGTCGCACAACAGTTTAACTGTA-----GTGTCAGCAGGAT-GCTTACATTAGACTCTCGCACCTCCGGAATCGCTTACGACAAGCAACAACAACGGCCCGGtg
gi|13 : TTTCAACGATCTATT--TCATACTCCACTTACTTACTAATACACCCAATTATAGA-CTCT------------TG-CGTGATAT-TGTGAAGGGCATCCACT-ACCCATTTTCTAGATTCACGAATCT
gi|15 : ttttttTGACAGGTCATTGATACATTAATGAAATTCTTAGAACCATGCGCTGTGCCCT-T-----TCTGAGAAACC-A-CTAT-GACATC-ACATTGT--TTCAACAAG-ACAATGatt
gi|16 : CAAGTGTACAACGGACGTCACGTCATAAACAACAAGGCATAGTTGGTGCAGct
gi|2 : AATCATATTCAATAAAAATGCTTTAAACTG-CTTGGTTTGTCACTTT-ATT-ATC-ACTGATCGTTCTTCATTTATTCACGAATACACCCAATTATAGACCATTTTTCAAT-AACAT--TGTG-T-T-TTCGAAGGACG-CCACCTGCCCATGACCTAGTTTCGTGAACC--ATCAA-AAATCATT-----GCTGACGATCATGCATGT--T-ATGAC-CCAGACA-CATGCCA----AC--------GTTGCAGC-AT----TT---TAATCTCGGA--TTAAAGCTGTTAAAA---CGCCTAGAA-GAAACTTGCA-CAT----TATTTACGTT---ATGGGAAAATTTGATGCCGTTCAACGTTATTAAGCCGTCGGT-GTGGTTGCC-GGTGAAATA-TAATATGATGAGGTT--G-CGCACACAATGCGTAT---------CACTATCATGCCGTTAGTCAAGAGACAACTGGAAACTGG-CTCT-A---T-GGTCGAC-CTCC-CA---TCC---------CAG-AA-ATGGA-GTCGTGAACCATCAATAAGACCGGC-ATATTATCCTTACGCAACTCAGAGATTGCTTTCAAACAGCAACATGAAAT---CGGAAAGCAAGGGTAAACAAGCAGCAACG--CATTAGTCGATCAGTTGTACGCCGAAACTTTTTGGCTGCAGGAATTGACAGC----GG-------AGAGGTGATGGAT--GCAT------GGTGTCGT------TGA----------------CATTTACGATGGACACATTATCAGTGGAAAGGTATTTTATTCAC------------------TTTTGTACAGACATGTA-CGA-TGGAAGGTGTAAAGTATGGCGTCGCAAAGATAAACGGTATGTTGATTGGTGCGCAAGACAGCACGCACGATGAACAGTGGGTAGTGTTATTGT
gi|2 : acattaatatgtatTGATAGTAGTAGAAGGACGTCTGACAGCTCAGGAATAAAGCGATGAAAT-CTTTGAACCGCGCATTGTGC----------------AA--CAA-T-ATAGA--TCTACGCCCCCATTCGGCCAGAATAATAT----CCTAGT----TTCTGAGACAGAATAACGTTCAAGCTACT---GCTCTGGTCGAACATTTATGGGACCAGCTTTGTCGTCAGATGTGCAGCGGGCGTCACGTGACAAATAGCGAGGtcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|2 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatcccACAGCTTCTTAATTGCTATATGAGACG-----------CATATTTCAAACGGCCGTGAAC-GCAAATGGCGGCTACATACGGTACTGA--TTTG-TGAACTTT-GGATAC-ACGC-TTC-AACATTTAAGGCAATGAAATTC--CACAAA---A---ATCTCACA-TATC--ATTGTTTCTTC---TAT--TGA-GGTT-TC----GTTAA-AAAG-CTCTGAA-AC--TTTCAT-T----TTTTG---TT-------TATTGC-----------TATAATGAGTGTATGTAATGGTACGTTTTCACTGACCGagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|3 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaag-ACGATGT-CAA-AGAATGAT-GTC-----CCGACAGCAATACCGCC-ATTCTGTCCTTACGCACTTCCGAAATTGCTTTTAAAGAGCAACACGGACTGCGTAGGAAACAAAGGAATACAACCTGCAACGCACATCAGTCGATCAACTGTGCGTTAACGATTGTTGACTTCAAGAATTGA-AGAGCATGGTCCGTACAGGGGTAATTTATTGACCGCAGAGAAGCGCCGCAAG-A-TCA---GTGGttt
gi|3 : cgctcaagCGCAAGATCAGTGGGAAAGCGTGGTATTCGCTGATTAATCAA-T----GTTTTGAATAGACATACA-CGA-T-GGA------AAG-----CATCGCAGAGGTGGACGGTTTGCTGATTGCTGCGTAAGACAGCACTCACGATGTTGACGGAGTAGTGTAATGGTGgaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|3 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgcTGATAGCGGTTGAAGGATGTCTAACAGCTCAGAGATACAATGATGGAAT-CTTGGAATCATGATTTGTGTCCTGT-----C----GAA--G-A-C-GT-GACGCC-ACGTTGT--TTCAACCAG-ATAACATCAGA--TCGTCGGATTC--AGCCTGAATAACAT-----CTA---------------AGCAATTATGGAACCAGtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|4 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgccgcaagatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacaccccTTCACGAATCTATT--TCGTACTCCACTTACTTACTTATACACCCAATTATAGACCCCTTTT--------GTG----GAT-T-TGTGAAGGTCATCCACA-ACCCAT--TCTA--TTAGT----TTCATGAA---ATCTGT-----GC-GA--ACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGTGTGGTAGC-AT----TTCAATTA-TT--GGC-TTAAGGCT-TT--------GG---AAA-G---------ACAT----TCTTTACGTA---ATTGGA-----------CGCTTGAC--TATGCAGTCGTCATT-ATGGTAGCCTG-TGAAAT-GTCATATAA-----TTAGGTTGCGCTTAGAATGCACT--TCATTCCACAATCATG
gi|5 : ttctagaC--TTCACTACCATGCGATTAGTGAGACGACACCAAGAAACCGG-CTCTGC---T-GCT-GATTGTCCACG---TCA-AGGACGC-CAA--TTGTGAC-GTC-----TCGTCAACAAGACCGTC-ATATTGTCCTTACGCACCCCCGAGA-----------CAGCAACACGGACTGACCAGGAAGCAAGGGGATGTAACCAGCAACG--CATTAGCCGCTCTACCGAACGCCGACGTCAGTTAGATGCCGGAATTTC-AGCCCATTATCCATATAGGGGTAACGTATTGACACCAGAGAGGCGACGTAACAG-TGAGTTGTGGTGTCGTCTGCCTCAACGATGGta
gi|6 : tgttctcaTAAACGAGCGGGATGCCGTCCCACAATGCAGGACT-CAGCGTCTCATCCGCAGTATGAGGCGTATTTGCCAGTC-----TGT---AGTAG---AC-GCAAACGGCGGCCACACTTGTTACTGA-GTTTGCTGAACTCA-G--TTC-A---------------AATGCA-TAAAATCC------------------------------AT--TTGCT-C---TTTCATGA-AATA-TTTGTTGTT-A-G--T-ACCTGAGCATTATTTTAT-TTCAGTTTTGACATCCAAAAAGTAGAGCAGT-CTAAAAATATAATAAGTATATTACATGGTGCGTTTTCATTGACCGCCAGTATA
gi|7 : AATGAAAATGCCCCAAACTGACTT--TATATTATTTTCACCAATCAA--GAGCGTTCT----TTATTTACTTGTACGTCCA-------------TTTCAC----CTTG-CGTGAA-TATGTGAATGATG---AAT-TCCTTTGATCTAGTTTCGTGAACCTCGTG--CAAATCGTT-----A---ACA--CGCTG--------------CC-------ATGTGC----AC--------GTGGTAGTAATTAAATTC-GTAT-C-------TTGAGGCTGTTAAAA----GGC--CAA-GAA-----CAACCTTGCACAGGGACGTTTGAATGG-------------CGCCCAACGTAACGAAG-CGTCAGTGATGctgactttcaatttcataaaaaagggacgtg
gi|8 : ttgatacatttgtgtgaGATTACAACGTCTTATTCGTAGTATAACACG-----------C-----TGA---TACTG---ACTGCAAACGGTGGTCACATACGGCACTTA--TTTG-TGAACTTT-GATTTTAAC-CGTTC-GACATTGAAGGCAATAAAATTC--CATAAA---AAAGA--TCACATT-TC--AT--TTGTTTCTTATAT--TGGTCAT--TC----TTT-A-AACTACTCTTAAACTTAT----T-TTCAATTGTGACATATAAGA--TATAGCAGTATCGAAAA-ATAATGATTGCATTTCATGGTGC-TTCTCTTTGGCTGTCATTATAactattatcatgaagttgc
gi|9 : ctGTTGACTGCAGGAATTAA-TGTTCATGATCTATATAGGGGTCATGTGTTGACATCAGAGAGACGCCGTAACTG-TGA---GTAATGATGTCGACATCTGCGATGGATACAAGACCAATAG---GATGTTGTACCCATTGA-----TGA-------------------GTGCA-AG----GAATACGAAAAGTATAGCGTCGTAGAGGTGAGCGTTAATTTGAGTGCTCCGCCAGACAGCACGCACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGACAGCAAGCACAATGGGGGAAGGGCCTGAGTCATGGTGTGTGTTGGTGGTGTATTTTGGCAGCACAAAACACCCCTGATAGTGGTTGAAGGAGGCCTG
Alignments
lowQualScore : 1 1 111 22 5555555555555 1 111 44444444444444444444444444 66666666666666666666666666666666666666666666666666666666666666 11 444444444444444444444 66666666666666666666666 2222 111 44444444444 1 111 11 333333333 3333333 1 2222222 1 2 111 111 1111 222222 11 2222 111 66666666666666666 2222222 1 77777777777777777777777 1 1 11 1 44444444444444 11 7777777777777777777777 1 1 1 777777777777777777777777 111 1 22 1 1111 444444444444444444 444444444444444444444444444444 11 111 11 11 11111111 11111111 11 1111
lowQualScore : 5 1 1 6 3 6 1 333 9 3 55 1 6 22 5 1 8 3 0 1111111111111 0 8 8 0 444 33333333333333333333333333 0 11111111111111111111111111111111111111111111111111111111111111 66 777777777777777777777 1 0 6 3 11111111111111111111111 1 1111 777 0 2 77777777777 2 2 1 6 0 666 44 444444444 88 0 0 4444444 0 3 1 1 0 0 8888888 0 0 55 777 222 1 8 3333 8 111111 8 22 1 0 0 1 33 1 1 1 0 999 8 22 0 1 0 8888 111 1 1 1 3 5 44 1 44444444444444444 22 1 0000000 5 1 22 0 0 1 1 00 8 0 3 0 3 11 1 0 0 44 2 00000000000000000000000 0 22 0 44 33 1 0 66666666666666 88 0000000000000000000000 1 5 1 1 0 0 5 1 5 33333 111111111111111111111111 0 777 0 3 9 1 55 0 4444 111111111111111111 9 555555555555555555555555555555 11 0 444 11 11 88888888 55555555 5 0 0 3 8 0 1 0 66 5 0 0 4444 1 0 5 1
lowQualScore : . . . . . . . ... . . .. . . .. . . . . . ............. . . . . ... .......................... . .............................................................. .. ..................... . . . . ....................... . .... ... . . ........... . . . . . ... .. ......... .. . . ....... . . . . . . ....... . . .. ... ... . . .... . ...... . .. . . . . .. . . . . ... . .. . . . .... ... . . . . . .. . ................. .. . ....... . . .. . . . . .. . . . . . .. . . . .. . ....................... . .. . .. .. . . .............. .. ...................... . . . . . . . . . ..... ........................ . ... . . . . .. . .... .................. . .............................. .. . ... .. .. ........ ........ . . . . . . . . .. . . . .... . . . .
lowQualScore : 5 0 0 7 3 7 0 888 0 8 44 4 4 44 6 0 2 8 8 4444444444444 8 0 0 6 000 88888888888888888888888888 2 00000000000000000000000000000000000000000000000000000000000000 55 888888888888888888888 2 2 5 2 55555555555555555555555 0 2222 555 2 5 55555555555 0 5 2 5 0 777 00 000000000 00 7 7 7777777 2 7 0 0 2 0 8888888 0 0 88 555 666 0 0 0000 0 444444 0 22 0 6 2 0 88 2 0 0 2 666 2 22 8 0 8 6666 777 0 0 4 8 6 44 0 00000000000000000 00 4 8888888 0 0 22 6 6 4 4 55 8 3 2 2 7 55 0 0 2 55 5 88888888888888888888888 0 88 0 55 88 0 0 77777777777777 33 7777777777777777777777 0 5 0 0 7 7 0 0 5 88888 222222222222222222222222 2 555 0 2 8 0 00 0 0000 000000000000000000 8 444444444444444444444444444444 00 8 000 00 88 44444444 22222222 0 8 8 2 0 8 4 8 44 6 6 8 0000 0 8 0 0
consensus : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA--C---AACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACA-TT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
Reference ( family-710 ) : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAAC-C---AACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACA-TT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
gi|1 : AACTATAC-CAATGAAAATGCACAAAA-TG-TTTGGCTTATTAGTTTCAGTTACCCATT--TCGTTATTTACTTTTTTACATATAAACAAACTTATTGATCGCTTTTCAATGA-CATGACGTGAT-T-TGAGAAGGACATCCGCT-GCCCATG------------------------CAAATCGTTATTTTGCTGACAATCCTTTTTAT--T-ATGAA-CCAGATA-AATGTAC----AC--------GTGGTGG--AT----TTC-ATAA-CT--GAGCTTTATATTATTAAAATTTCGAC--AAAAGAATTC---AACTT----CATTTACGTT---ATAGGA-----------CGCCCAACGTCATGAAGCCGTCAGT-ATGGTAGCC-G-GGAGATAGTCATATATCG---TT--GTTGCACACAGTATGCATTGTTC--TCCACTATCATGCAGTTAGTTAGGCGACACCAAGCAACCGG-CTCT-C---TTGCT-GATAGTCCACG---TCC-AGGACGC-CAA-AGTATGAC-ATC-----TCGTCAGCAAGACCACC-ACACTGTCCTTACGCACCTCCGAGATCGCTTTCAGACAACAACACGGACTGCCCAGGAAGCAAGGGGATATAAGCAGTAACG--CATAAATAGCTCCACCATGCGTCGACGCCTGTAAGATGCAGGCATTTC-AGCCTATGTTCCATATCGGGGTAACGTATTGACATCAGAGAGGCGACGTAAT-ACTGA---GTTGTGTCGTCGG-ATCTACGATGGACGCAAAATCAGTGGAAAGGTGTTCTTTTCACTGA-----CGAGTTCAGGTTTTGTATAGATATTCT-GGATT-GGGGGCGTAAGGTGTGGCGTCTCCGAGGCGAGCGTTACGCAGATTGCTGCGTCAAACAGCATGCACGGTGGGGA-GTGGCAGTGTAATGGTGATGGCAGGTAGTCTGACGGCTCGAAGATACGTTGACGAAAT-CTTGGAACCATGTATTATACCCT-TTCTTCC----AAAT-C-ACC-AT-GTCGTC-ACGCAAT--TTCAGCAGG-ACAACGCTGGGCCAC-T----TTC--AGCCAGAATAACGT--AAG--ACCTGAGCCCT-ATTGAGCATTTATGGCACCAGC-TCGGCGGCGAGTGTACAATGGACGTCACGTCATCAACAACAAGGCACAGTTAGTGCAGACACTGTTAGAC-AGTGGGATGCCATGCCACAATACAGGATT-CAGCGTCTCATCCACAGTA------------------------TGA---GGCCG---AC-GCAAACGGCGGCCAC-T-CGCTACTGAGGTTTG-TGAACTTTCAGTTTC-AC-C-CTCTTTCA-TT-TAGGCATTAAAATTCAGCTCAAATGCA---A--TAACA-T-CC--AT--TTGCTTT---TAA--TGA-AATA-TT----GTT-GTAAGT-CCCTGAACATTATTTAAT-TTCAGTTTTGACATCCAAAAAGAAGAGCAG-ACTAAAAATAGAATAAGTATATTTCATGGTGCGTTTTCATTGACCGCCAGTATA
gi|10 : c---GTGGTGTCGTCGGCATCTAAGATGAACACAAAATCATTGGAA---------------T-----------T----GTTTTGTTTAGATGTGCATCCA-A-GAAGGCGTAAAGTGTGGCATCGCCGAGGTGAGCGTTACGTAGATTGCTGCGTCAGACAGCATGCACGGTGGGGACGGGGTTGTGTAATGGT-GTGGaatataagactcctaaacagacgtttg
gi|11 : gtaaccgtcagttAAA---T---A--TCACA-T-TTCGAC--ATGCTTC---TAT--TG--AATAGTC----GTT-A-AAAC-TTTTAAACATTATTTCATGTTTAATTTTGATAT-GAAAAAGTATAGCAGTATCAAATATATACTGATTATTTTTGATGATGTTTTTATATTGACAGTCGTTACAgccggtataccactgcaccacagaacacacctggtagtggttgcaggcagtctga
gi|12 : GAAACCAAGCAATAGGTCTTT-TGAGT-GCT-GGC-GTC-ACGAAATCCGACGTCGCACAACAGTTTAACTGTA-----GTGTCAGCAGGAT-GCTTACATTAGACTCTCGCACCTCCGGAATCGCTTACGACAAGCAACAACAACGGCCCGGtg
gi|13 : TTTCAACGATCTATT--TCATACTCCACTTACTTACTAATACACCCAATTATAGA-CTCT------------TG-CGTGATAT-TGTGAAGGGCATCCACT-ACCCATTTTCTAGATTCACGAATCT
gi|15 : ttttttTGACAGGTCATTGATACATTAATGAAATTCTTAGAACCATGCGCTGTGCCCT-T-----TCTGAGAAACC-A-CTAT-GACATC-ACATTGT--TTCAACAAG-ACAATGatt
gi|16 : CAAGTGTACAACGGACGTCACGTCATAAACAACAAGGCATAGTTGGTGCAGct
gi|2 : AATCATATTCAATAAAAATGCTTTAAACTG-CTTGGTTTGTCACTTT-ATT-ATC-ACTGATCGTTCTTCATTTATTCACGAATACACCCAATTATAGACCATTTTTCAAT-AACAT--TGTG-T-T-TTCGAAGGACG-CCACCTGCCCATGACCTAGTTTCGTGAACC--ATCAA-AAATCATT-----GCTGACGATCATGCATGT--T-ATGAC-CCAGACA-CATGCCA----AC--------GTTGCAGC-AT----TT---TAATCTCGGA--TTAAAGCTGTTAAAA---CGCCTAGAA-GAAA-CTTGCACAT----TATTTACGTT---ATGGGAAAATTTGATGCCGTTCAACGTTATTAAGCCGTCGGT-GTGGTTGCC-GGTGAAATA-TAATATGATGAGGTT--G-CGCACACAATGCGTAT---------CACTATCATGCCGTTAGTCAAGAGACAACTGGAAACTGG-CTCT-A---T-GGTCGAC-CTCC-CA---TCC---------CAG-AA-ATGGA-GTCGTGAACCATCAATAAGACCGGC-ATATTATCCTTACGCAACTCAGAGATTGCTTTCAAACAGCAACATGAAAT---CGGAAAGCAAGGGTAAACAAGCAGCAACG--CATTAGTCGATCAGTTGTACGCCGAAACTTTTTGGCTGCAGGAATTGACAGC----GG-------AGAGGTGATGGAT--GCAT------GGTGTCGT------TGA----------------CATTTACGATGGACACATTATCAGTGGAAAGGTATTTTATTCAC------------------TTTTGTACAGACATGTA-CGA-TGGAAGGTGTAAAGTATGGCGTCGCAAAGATAAACGGTATGTTGATTGGTGCGCAAGACAGCACGCACGATGAACAGTGGGTAGTGTTATTGT
gi|2 : acattaatatgtatTGATAGTAGTAGAAGGACGTCTGACAGCTCAGGAATAAAGCGATGAAAT-CTTTGAACCGCGCATTGTGC----------------AA--CAA-T-ATAGA--TCTACGCCCCCATTCGGCCAGAATAATAT----CCTAGT----TTCTGAGACAGAATAACGTTCAAGCTACT---GCTCTGGTCGAACATTTATGGGACCAGCTTTGTCGTCAGATGTGCAGCGGGCGTCACGTGACAAATAGCGAGGtcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|2 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatcccACAGCTTCTTAATTGCTATATGAGACG-----------CATATTTCAAACGGCCGTGAAC-GCAAATGGCGGCTACATACGGTACTGA--TTTG-TGAACTTT-GGATAC-ACGC-TTC-AACATTT-AAGGCAATGAAATTC--CACAAA---A---ATCTCACA-TATC--ATTGTTTCTTC---TAT--TGA-GGTT-TC----GTTAA-AAAG-CTCTGAA-AC--TTTCAT-T----TTTTG---TT-------TATTGC-----------TATAATGAGTGTATGTAATGGTACGTTTTCACTGACCGagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|3 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaag-ACGATGT-CAA-AGAATGAT-GTC-----CCGACAGCAATACCGCC-ATTCTGTCCTTACGCACTTCCGAAATTGCTTTTAAAGAGCAACACGGACTGCGTAGGAAACAAAGGAATACAACCTGCAACGCACATCAGTCGATCAACTGTGCGTTAACGATTGTTGACTTCAAGAATTGA-AGAGCATGGTCCGTACAGGGGTAATTTATTGACCGCAGAGAAGCGCCGCAAG-A-TCA---GTGGttt
gi|3 : cgctcaagCGCAAGATCAGTGGGAAAGCGTGGTATTCGCTGATTAATCAA-T----GTTTTGAATAGACATACA-CGA-T-GGA------AAG-----CATCGCAGAGGTGGACGGTTTGCTGATTGCTGCGTAAGACAGCACTCACGATGTTGACGGAGTAGTGTAATGGTGgaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|3 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgcTGATAGCGGTTGAAGGATGTCTAACAGCTCAGAGATACAATGATGGAAT-CTTGGAATCATGATTTGTGTCCTGT-----C----GAA--G-A-C-GT-GACGCC-ACGTTGT--TTCAACCAG-ATAACATCAGA--TCGTCGGATTC--AGCCTGAATAACAT-----CTA---------------AGCAATTATGGAACCAGtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|4 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgccgcaagatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacaccccTTCACGAATCTATT--TCGTACTCCACTTACTTACTTATACACCCAATTATAGACCCCTTTT--------GTG----GAT-T-TGTGAAGGTCATCCACA-ACCCAT--TCTA--TTAGT----TTCATGAA---ATCTGT-----GC-GA--ACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGTGTGGTAGC-AT----TTCAATTA-TT--GGC-TTAAGGCT-TT--------GG---AAA-G---------ACAT----TCTTTACGTA---ATTGGA-----------CGCTTGAC--TATGCAGTCGTCATT-ATGGTAGCCTG-TGAAAT-GTCATATAA-----TTAGGTTGCGCTTAGAATGCACT--TCATTCCACAATCATG
gi|5 : ttctagaC--TTCACTACCATGCGATTAGTGAGACGACACCAAGAAACCGG-CTCTGC---T-GCT-GATTGTCCACG---TCA-AGGACGC-CAA--TTGTGAC-GTC-----TCGTCAACAAGACCGTC-ATATTGTCCTTACGCACCCCCGAGA-----------CAGCAACACGGACTGACCAGGAAGCAAGGGGATGTAACCAGCAACG--CATTAGCCGCTCTACCGAACGCCGACGTCAGTTAGATGCCGGAATTTC-AGCCCATTATCCATATAGGGGTAACGTATTGACACCAGAGAGGCGACGTAACAG-TGAGTTGTGGTGTCGTCTGCCTCAACGATGGta
gi|6 : tgttctcaTAAACGAGCGGGATGCCGTCCCACAATGCAGGACT-CAGCGTCTCATCCGCAGTATGAGGCGTATTTGCCAGTC-----TGT---AGTAG---AC-GCAAACGGCGGCCACACTTGTTACTGA-GTTTGCTGAACTCA-G--TTC-A----------------AATGCA-TAAAATCC------------------------------AT--TTGCT-C---TTTCATGA-AATA-TTTGTTGTT-A-G--T-ACCTGAGCATTATTTTAT-TTCAGTTTTGACATCCAAAAAGTAGAGCAGT-CTAAAAATATAATAAGTATATTACATGGTGCGTTTTCATTGACCGCCAGTATA
gi|7 : AATGAAAATGCCCCAAACTGACTT--TATATTATTTTCACCAATCAA--GAGCGTTCT----TTATTTACTTGTACGTCCA-------------TTTCAC----CTTG-CGTGAA-TATGTGAATGATG---AAT-TCCTTTGATCTAGTTTCGTGAACCTCGTG--CAAATCGTT-----A---ACA--CGCTG--------------CC-------ATGTGC----AC--------GTGGTAGTAATTAAATTC-GTAT-C-------TTGAGGCTGTTAAAA----GGC--CAA-GAA--C---AACCTTGCACAGGGACGTTTGAATGG-------------CGCCCAACGTAACGAAG-CGTCAGTGATGctgactttcaatttcataaaaaagggacgtg
gi|8 : ttgatacatttgtgtgaGATTACAACGTCTTATTCGTAGTATAACACG-----------C-----TGA---TACTG---ACTGCAAACGGTGGTCACATACGGCACTTA--TTTG-TGAACTTT-GATTTTAAC-CGTTC-GACA-TTGAAGGCAATAAAATTC--CATAAA---AAAGA--TCACATT-TC--AT--TTGTTTCTTATAT--TGGTCAT--TC----TTT-A-AACTACTCTTAAACTTAT----T-TTCAATTGTGACATATAAGA--TATAGCAGTATCGAAAA-ATAATGATTGCATTTCATGGTGC-TTCTCTTTGGCTGTCATTATAactattatcatgaagttgc
gi|9 : ctGTTGACTGCAGGAATTAA-TGTTCATGATCTATATAGGGGTCATGTGTTGACATCAGAGAGACGCCGTAACTG-TGA---GTAATGATGTCGACATCTGCGATGGATACAAGACCAATAG---GATGTTGTACCCATTGA-----TGA-------------------GTGCA-AG----GAATACGAAAAGTATAGCGTCGTAGAGGTGAGCGTTAATTTGAGTGCTCCGCCAGACAGCACGCACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGACAGCAAGCACAATGGGGGAAGGGCCTGAGTCATGGTGTGTGTTGGTGGTGTATTTTGGCAGCACAAAACACCCCTGATAGTGGTTGAAGGAGGCCTG
Alignments
lowQualScore : 1 1 111 22 5555555555555 1 111 44444444444444444444444444 66666666666666666666666666666666666666666666666666666666666666 11 444444444444444444444 555555555555555555555 2222 111 44444444444 1 111 11 333333333 3333333 1 2222222 1 2 111 111 1111 222222 11 2222 111 66666666666666666 2222222 1 77777777777777777777777 1 1 11 1 44444444444444 11 7777777777777777777777 1 1 1 777777777777777777777777 111 1 22 1 1111 44444444444444444 444444444444444444444444444444 11 111 11 11 11111111 11111111 11 1111
lowQualScore : 5 1 1 6 3 6 1 333 9 3 55 1 6 22 5 1 8 3 0 1111111111111 0 8 8 0 444 33333333333333333333333333 0 11111111111111111111111111111111111111111111111111111111111111 66 777777777777777777777 1 0 6 3 444444444444444444444 3 1 1111 777 0 2 77777777777 2 2 1 6 0 666 44 444444444 88 0 0 4444444 0 3 1 1 0 0 8888888 0 0 55 777 222 1 8 3333 8 111111 8 22 1 0 0 1 33 1 1 1 0 999 8 22 0 1 0 8888 111 1 1 1 3 5 44 1 44444444444444444 22 1 0000000 5 1 22 0 0 1 1 00 8 0 3 0 3 11 1 0 0 44 2 00000000000000000000000 0 22 0 44 33 1 0 66666666666666 88 0000000000000000000000 1 5 1 1 0 0 5 1 5 33333 111111111111111111111111 0 777 0 3 9 1 55 0 4444 11111111111111111 9 555555555555555555555555555555 11 0 444 11 11 88888888 55555555 5 0 0 3 8 0 1 0 66 5 0 0 4444 1 0 5 1
lowQualScore : . . . . . . . ... . . .. . . .. . . . . . ............. . . . . ... .......................... . .............................................................. .. ..................... . . . . ..................... . . .... ... . . ........... . . . . . ... .. ......... .. . . ....... . . . . . . ....... . . .. ... ... . . .... . ...... . .. . . . . .. . . . . ... . .. . . . .... ... . . . . . .. . ................. .. . ....... . . .. . . . . .. . . . . . .. . . . .. . ....................... . .. . .. .. . . .............. .. ...................... . . . . . . . . . ..... ........................ . ... . . . . .. . .... ................. . .............................. .. . ... .. .. ........ ........ . . . . . . . . .. . . . .... . . . .
lowQualScore : 5 0 0 7 3 7 0 888 0 8 44 4 4 44 6 0 2 8 8 4444444444444 8 0 0 6 000 88888888888888888888888888 2 00000000000000000000000000000000000000000000000000000000000000 55 888888888888888888888 2 2 5 2 555555555555555555555 2 0 2222 555 2 5 55555555555 0 5 2 5 0 777 00 000000000 00 7 7 7777777 2 7 0 0 2 0 8888888 0 0 88 555 666 0 0 0000 0 444444 0 22 0 6 2 0 88 2 0 0 2 666 2 22 8 0 8 6666 777 0 0 4 8 6 44 0 00000000000000000 00 4 8888888 0 0 22 6 6 4 4 55 8 3 2 2 7 55 0 0 2 55 5 88888888888888888888888 0 88 0 55 88 0 0 77777777777777 33 7777777777777777777777 0 5 0 0 7 7 0 0 5 88888 222222222222222222222222 2 555 0 2 8 0 00 0 0000 00000000000000000 8 444444444444444444444444444444 00 8 000 00 88 44444444 22222222 0 8 8 2 0 8 4 8 44 6 6 8 0000 0 8 0 0
consensus : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA-C---CAACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACATT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
Reference ( family-710 ) : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA-----CAACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACATT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
gi|1 : AACTATAC-CAATGAAAATGCACAAAA-TG-TTTGGCTTATTAGTTTCAGTTACCCATT--TCGTTATTTACTTTTTTACATATAAACAAACTTATTGATCGCTTTTCAATGA-CATGACGTGAT-T-TGAGAAGGACATCCGCT-GCCCATG------------------------CAAATCGTTATTTTGCTGACAATCCTTTTTAT--T-ATGAA-CCAGATA-AATGTAC----AC--------GTGGTGG--AT----TTC-ATAA-CT--GAGCTTTATATTATTAAAATTTCGAC--AAAAGAATT---CAACTT----CATTTACGTT---ATAGGA-----------CGCCCAACGTCATGAAGCCGTCAGT-ATGGTAGCC-G-GGAGATAGTCATATATCG---TT--GTTGCACACAGTATGCATTGTTC--TCCACTATCATGCAGTTAGTTAGGCGACACCAAGCAACCGG-CTCT-C---TTGCT-GATAGTCCACG---TCC-AGGACGC-CAA-AGTATGAC-ATC-----TCGTCAGCAAGACCACC-ACACTGTCCTTACGCACCTCCGAGATCGCTTTCAGACAACAACACGGACTGCCCAGGAAGCAAGGGGATATAAGCAGTAACG--CATAAATAGCTCCACCATGCGTCGACGCCTGTAAGATGCAGGCATTTC-AGCCTATGTTCCATATCGGGGTAACGTATTGACATCAGAGAGGCGACGTAAT-ACTGA---GTTGTGTCGTCGG-ATCTACGATGGACGCAAAATCAGTGGAAAGGTGTTCTTTTCACTGA-----CGAGTTCAGGTTTTGTATAGATATTCT-GGATT-GGGGGCGTAAGGTGTGGCGTCTCCGAGGCGAGCGTTACGCAGATTGCTGCGTCAAACAGCATGCACGGTGGGGA-GTGGCAGTGTAATGGTGATGGCAGGTAGTCTGACGGCTCGAAGATACGTTGACGAAAT-CTTGGAACCATGTATTATACCCT-TTCTTCC----AAAT-C-ACC-AT-GTCGTC-ACGCAAT--TTCAGCAGG-ACAACGCTGGGCCAC-T----TTC--AGCCAGAATAACGT--AAG--ACCTGAGCCCT-ATTGAGCATTTATGGCACCAGC-TCGGCGGCGAGTGTACAATGGACGTCACGTCATCAACAACAAGGCACAGTTAGTGCAGACACTGTTAGAC-AGTGGGATGCCATGCCACAATACAGGATT-CAGCGTCTCATCCACAGTA------------------------TGA---GGCCG---AC-GCAAACGGCGGCCAC-T-CGCTACTGAGGTTTG-TGAACTTTCAGTTTC-AC-C-CTCTTTCATT-TAGGCATTAAAATTCAGCTCAAATGCA---A--TAACA-T-CC--AT--TTGCTTT---TAA--TGA-AATA-TT----GTT-GTAAGT-CCCTGAACATTATTTAAT-TTCAGTTTTGACATCCAAAAAGAAGAGCAG-ACTAAAAATAGAATAAGTATATTTCATGGTGCGTTTTCATTGACCGCCAGTATA
gi|10 : c---GTGGTGTCGTCGGCATCTAAGATGAACACAAAATCATTGGAA---------------T-----------T----GTTTTGTTTAGATGTGCATCCA-A-GAAGGCGTAAAGTGTGGCATCGCCGAGGTGAGCGTTACGTAGATTGCTGCGTCAGACAGCATGCACGGTGGGGACGGGGTTGTGTAATGGT-GTGGaatataagactcctaaacagacgtttg
gi|11 : gtaaccgtcagttAAA---T---A--TCACA-T-TTCGAC--ATGCTTC---TAT--TG--AATAGTC----GTT-A-AAAC-TTTTAAACATTATTTCATGTTTAATTTTGATAT-GAAAAAGTATAGCAGTATCAAATATATACTGATTATTTTTGATGATGTTTTTATATTGACAGTCGTTACAgccggtataccactgcaccacagaacacacctggtagtggttgcaggcagtctga
gi|12 : GAAACCAAGCAATAGGTCTTT-TGAGT-GCT-GGC-GTC-ACGAAATCCGACGTCGCACAACAGTTTAACTGTA-----GTGTCAGCAGGAT-GCTTACATTAGACTCTCGCACCTCCGGAATCGCTTACGACAAGCAACAACAACGGCCCGGtg
gi|13 : TTTCAACGATCTATT--TCATACTCCACTTACTTACTAATACACCCAATTATAGA-CTCT------------TG-CGTGATAT-TGTGAAGGGCATCCACT-ACCCATTTTCTAGATTCACGAATCT
gi|15 : ttttttTGACAGGTCATTGATACATTAATGAAATTCTTAGAACCATGCGCTGTGCCCT-T-----TCTGAGAAACC-A-CTAT-GACATC-ACATTGT--TTCAACAAG-ACAATGatt
gi|16 : CAAGTGTACAACGGACGTCACGTCATAAACAACAAGGCATAGTTGGTGCAGct
gi|2 : AATCATATTCAATAAAAATGCTTTAAACTG-CTTGGTTTGTCACTTT-ATT-ATC-ACTGATCGTTCTTCATTTATTCACGAATACACCCAATTATAGACCATTTTTCAAT-AACAT--TGTG-T-T-TTCGAAGGACG-CCACCTGCCCATGACCTAGTTTCGTGAACC--ATCAA-AAATCATT-----GCTGACGATCATGCATGT--T-ATGAC-CCAGACA-CATGCCA----AC--------GTTGCAGC-AT----TT---TAATCTCGGA--TTAAAGCTGTTAAAA---CGCCTAGAA-GAAACTTGCA-CAT----TATTTACGTT---ATGGGAAAATTTGATGCCGTTCAACGTTATTAAGCCGTCGGT-GTGGTTGCC-GGTGAAATA-TAATATGATGAGGTT--G-CGCACACAATGCGTAT---------CACTATCATGCCGTTAGTCAAGAGACAACTGGAAACTGG-CTCT-A---T-GGTCGAC-CTCC-CA---TCC---------CAG-AA-ATGGA-GTCGTGAACCATCAATAAGACCGGC-ATATTATCCTTACGCAACTCAGAGATTGCTTTCAAACAGCAACATGAAAT---CGGAAAGCAAGGGTAAACAAGCAGCAACG--CATTAGTCGATCAGTTGTACGCCGAAACTTTTTGGCTGCAGGAATTGACAGC----GG-------AGAGGTGATGGAT--GCAT------GGTGTCGT------TGA----------------CATTTACGATGGACACATTATCAGTGGAAAGGTATTTTATTCAC------------------TTTTGTACAGACATGTA-CGA-TGGAAGGTGTAAAGTATGGCGTCGCAAAGATAAACGGTATGTTGATTGGTGCGCAAGACAGCACGCACGATGAACAGTGGGTAGTGTTATTGT
gi|2 : acattaatatgtatTGATAGTAGTAGAAGGACGTCTGACAGCTCAGGAATAAAGCGATGAAAT-CTTTGAACCGCGCATTGTGC----------------AA--CAA-T-ATAGA--TCTACGCCCCCATTCGGCCAGAATAATAT----CCTAGT----TTCTGAGACAGAATAACGTTCAAGCTACT---GCTCTGGTCGAACATTTATGGGACCAGCTTTGTCGTCAGATGTGCAGCGGGCGTCACGTGACAAATAGCGAGGtcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|2 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatcccACAGCTTCTTAATTGCTATATGAGACG-----------CATATTTCAAACGGCCGTGAAC-GCAAATGGCGGCTACATACGGTACTGA--TTTG-TGAACTTT-GGATAC-ACGC-TTC-AACATTTAAGGCAATGAAATTC--CACAAA---A---ATCTCACA-TATC--ATTGTTTCTTC---TAT--TGA-GGTT-TC----GTTAA-AAAG-CTCTGAA-AC--TTTCAT-T----TTTTG---TT-------TATTGC-----------TATAATGAGTGTATGTAATGGTACGTTTTCACTGACCGagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|3 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaag-ACGATGT-CAA-AGAATGAT-GTC-----CCGACAGCAATACCGCC-ATTCTGTCCTTACGCACTTCCGAAATTGCTTTTAAAGAGCAACACGGACTGCGTAGGAAACAAAGGAATACAACCTGCAACGCACATCAGTCGATCAACTGTGCGTTAACGATTGTTGACTTCAAGAATTGA-AGAGCATGGTCCGTACAGGGGTAATTTATTGACCGCAGAGAAGCGCCGCAAG-A-TCA---GTGGttt
gi|3 : cgctcaagCGCAAGATCAGTGGGAAAGCGTGGTATTCGCTGATTAATCAA-T----GTTTTGAATAGACATACA-CGA-T-GGA------AAG-----CATCGCAGAGGTGGACGGTTTGCTGATTGCTGCGTAAGACAGCACTCACGATGTTGACGGAGTAGTGTAATGGTGgaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|3 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgcTGATAGCGGTTGAAGGATGTCTAACAGCTCAGAGATACAATGATGGAAT-CTTGGAATCATGATTTGTGTCCTGT-----C----GAA--G-A-C-GT-GACGCC-ACGTTGT--TTCAACCAG-ATAACATCAGA--TCGTCGGATTC--AGCCTGAATAACAT-----CTA---------------AGCAATTATGGAACCAGtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|4 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgccgcaagatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacaccccTTCACGAATCTATT--TCGTACTCCACTTACTTACTTATACACCCAATTATAGACCCCTTTT--------GTG----GAT-T-TGTGAAGGTCATCCACA-ACCCAT--TCTA--TTAGT----TTCATGAA---ATCTGT-----GC-GA--ACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGTGTGGTAGC-AT----TTCAATTA-TT--GGC-TTAAGGCT-TT--------GG---AAA-G---------ACAT----TCTTTACGTA---ATTGGA-----------CGCTTGAC--TATGCAGTCGTCATT-ATGGTAGCCTG-TGAAAT-GTCATATAA-----TTAGGTTGCGCTTAGAATGCACT--TCATTCCACAATCATG
gi|5 : ttctagaC--TTCACTACCATGCGATTAGTGAGACGACACCAAGAAACCGG-CTCTGC---T-GCT-GATTGTCCACG---TCA-AGGACGC-CAA--TTGTGAC-GTC-----TCGTCAACAAGACCGTC-ATATTGTCCTTACGCACCCCCGAGA-----------CAGCAACACGGACTGACCAGGAAGCAAGGGGATGTAACCAGCAACG--CATTAGCCGCTCTACCGAACGCCGACGTCAGTTAGATGCCGGAATTTC-AGCCCATTATCCATATAGGGGTAACGTATTGACACCAGAGAGGCGACGTAACAG-TGAGTTGTGGTGTCGTCTGCCTCAACGATGGta
gi|6 : tgttctcaTAAACGAGCGGGATGCCGTCCCACAATGCAGGACT-CAGCGTCTCATCCGCAGTATGAGGCGTATTTGCCAGTC-----TGT---AGTAG---AC-GCAAACGGCGGCCACACTTGTTACTGA-GTTTGCTGAACTCA-G--TTC-A---------------AATGCA-TAAAATCC------------------------------AT--TTGCT-C---TTTCATGA-AATA-TTTGTTGTT-A-G--T-ACCTGAGCATTATTTTAT-TTCAGTTTTGACATCCAAAAAGTAGAGCAGT-CTAAAAATATAATAAGTATATTACATGGTGCGTTTTCATTGACCGCCAGTATA
gi|7 : AATGAAAATGCCCCAAACTGACTT--TATATTATTTTCACCAATCAA--GAGCGTTCT----TTATTTACTTGTACGTCCA-------------TTTCAC----CTTG-CGTGAA-TATGTGAATGATG---AAT-TCCTTTGATCTAGTTTCGTGAACCTCGTG--CAAATCGTT-----A---ACA--CGCTG--------------CC-------ATGTGC----AC--------GTGGTAGTAATTAAATTC-GTAT-C-------TTGAGGCTGTTAAAA----GGC--CAA-GAA-----CAACCTTGCACAGGGACGTTTGAATGG-------------CGCCCAACGTAACGAAG-CGTCAGTGATGctgactttcaatttcataaaaaagggacgtg
gi|8 : ttgatacatttgtgtgaGATTACAACGTCTTATTCGTAGTATAACACG-----------C-----TGA---TACTG---ACTGCAAACGGTGGTCACATACGGCACTTA--TTTG-TGAACTTT-GATTTTAAC-CGTTC-GACATTGAAGGCAATAAAATTC--CATAAA---AAAGA--TCACATT-TC--AT--TTGTTTCTTATAT--TGGTCAT--TC----TTT-A-AACTACTCTTAAACTTAT----T-TTCAATTGTGACATATAAGA--TATAGCAGTATCGAAAA-ATAATGATTGCATTTCATGGTGC-TTCTCTTTGGCTGTCATTATAactattatcatgaagttgc
gi|9 : ctGTTGACTGCAGGAATTAA-TGTTCATGATCTATATAGGGGTCATGTGTTGACATCAGAGAGACGCCGTAACTG-TGA---GTAATGATGTCGACATCTGCGATGGATACAAGACCAATAG---GATGTTGTACCCATTGA-----TGA-------------------GTGCA-AG----GAATACGAAAAGTATAGCGTCGTAGAGGTGAGCGTTAATTTGAGTGCTCCGCCAGACAGCACGCACG
blockSeqs : T T T C A G C ACG T T GA A C TA A A C T CAATAACATT A A T CTG GATCTAGTTTCGTGAACCTCGTGC GCGAACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGT TA TTCAATTATTGGC A G A CGCCTAGAAGAAACTTG A A TGCA TGA G AAATTTGATGC A G T C G GG A TGAGGTT TT TTCAT C C C T TGAGT C T CA AAA GAC T A CAGT T GTGAAC T TC A G CA T A A GAC G GT T CAG GTT G T A A A TT A TGATTAATCAAT TT T TCCAA G T TG C A C A C TT T T CG C TTCTGAGAAACCACT A CA T TG CA A A CAGATCGTCGGA TG TCAAGCTACTGCTCTGGTC G T T T G C A TGAGA TATTTGCCAGTCTGTA TGA T A A G G C GGA AACCGTTCGACATTG A CATAAAAAAGATCACATTTC TG TTA CA GT ATTTGTT AAAAAG C C G A CC A TATC T T T
blockSeqs : C C C . . T CGA T C GA T T GA A A C A CACCTTGC . . T TA GACCTAGTTTCGTGAACCATCAA GCTGACGATCATGCATGTTATGACCCAGACACATGCCAAC C TTTAATCTCGGA A G A GGCCAAGAA A A . . G . G G T T . TG G TTAG C . G G A . GCT . . A . AC A . AGA . G . TT T C . C A A GA C AT C CTG . G T T A A GG A TGATGA TA C CGATG G T TA T T G G T GG G . CA C GTCGAAGAC . CG . CC . C . CCTAGT . CTA A A TGAGG CATATTTCAAACG . . A T T . . GAT ACGCTTCAACATTT A CACAAAAATCTCACATATC . . . A AGTC AAACTA C C . G AT A TATC A G G
blockSeqs : CCA A T . A C TT A A . C TGC . . . AA TCTATTAGTTTCATGAA AACACGCTGCCATGTGCAC C TAAATTCGTATC G . . GGAAAG . C . . . . A . A . . A . AT . . C . AG A . AA . C . TT T C . T C T TC T AT A GA . G A G G . TG A TT AA C CGAT T A TA T T C G GA A . AT . AACAAT . . . TG . C . . TAACA CTGAT . . A A G . . G A . . . . . A TTC AAAAC A T . A G . TCT A G T
blockSeqs : TT . . . T . TT . . . . GTG . . . TT . . . TT . T . . . AA . G C . . A . G . . . . . . . AG . . . A T . . . . . TC AGT . . . . T . . . .
blockSeqs : . .
blockSeqCons : TG*********** NA** TT*************** TC****** TT**
originalCons : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTCAAT-A-CGTG-CGTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA-C---CAACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAA-AGTATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA-----CGA-T----GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACATT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATA-TC----GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTACCAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
finalCons : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTTTG-----------GTGAT-T-TGTGAAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA-C---CAACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACGC-CAANA--ATGAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTT---------------GTTTTGTATAGACGTGCA-CGA-T-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACATT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-AATTC------GTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAGTT--AAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGACAGCAAGCACAATGGGGGAAGGGCCTGAGTCATGGTGTGTGTTGGTGGTGTATTTTGGCAGCACAAAACACCCCTGATAGTGGTTGAAGGAGGCCTG
Alignments
lowQualScore : 1 1 111 22 555555555555555555 1 222222 1 111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 444444444444444444444 66666666666666666666666 2222 111 44444444444 1 111 11 333333333 3333333 1 2222222 1 2 111 111 222222 11 222222 11 2222 111 7777777777777777 222222 1 77777777777777777777777 1 1 11 1 44444444444444 11 7777777777777777777777 1 1 1 777777777777777777777777 111 1 22 1 1111 44444444444444444 444444444444444444444444444444 11 111 11 44444444444 11111111 11 3333
lowQualScore : 5 1 1 6 3 6 1 333 9 3 55 1 6 22 1 11 222222222222222222 0 6 8 333333 0 444 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 66 777777777777777777777 1 0 6 3 11111111111111111111111 1 1111 777 0 2 77777777777 2 2 1 6 0 666 44 444444444 88 0 0 4444444 0 3 1 1 0 0 8888888 0 0 55 444 222 1 000000 888 11 8 111111 8 22 1 0 0 1 33 1 1 1 0 999 8 22 0 1 0 8888 111 1 1 1 3 5 44 1 6666666666666666 0 1 0 6 000000 5 1 22 0 0 1 1 00 8 0 3 0 3 11 1 0 0 44 2 00000000000000000000000 0 22 0 44 33 1 0 66666666666666 88 0000000000000000000000 1 5 1 1 0 0 5 1 5 33333 111111111111111111111111 0 777 0 3 9 1 55 0 4444 11111111111111111 9 555555555555555555555555555555 11 0 444 11 00000000000 55555555 5 0 0 3 8 0 1 0 66 5 0 0 3333 0 1 5 1
lowQualScore : . . . . . . . ... . . .. . . .. . .. .................. . . . ...... . ... ................................................................................................ .. ..................... . . . . ....................... . .... ... . . ........... . . . . . ... .. ......... .. . . ....... . . . . . . ....... . . .. ... ... . ...... ... .. . ...... . .. . . . . .. . . . . ... . .. . . . .... ... . . . . . .. . ................ . . . . ...... . . .. . . . . .. . . . . . .. . . . .. . ....................... . .. . .. .. . . .............. .. ...................... . . . . . . . . . ..... ........................ . ... . . . . .. . .... ................. . .............................. .. . ... .. ........... ........ . . . . . . . . .. . . . .... . . . .
lowQualScore : 5 0 0 7 3 7 0 888 0 8 44 4 4 44 0 88 222222222222222222 8 0 0 000000 6 000 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 55 888888888888888888888 2 2 5 2 55555555555555555555555 0 2222 555 2 5 55555555555 0 5 2 5 0 777 00 000000000 00 7 7 7777777 2 7 0 0 2 0 8888888 0 0 88 000 666 0 000000 222 00 0 444444 0 22 0 6 2 0 88 2 0 0 2 666 2 22 8 0 8 6666 777 0 0 4 8 6 44 0 6666666666666666 8 0 8 4 888888 0 0 22 6 6 4 4 55 8 3 2 2 7 55 0 0 2 55 5 88888888888888888888888 0 88 0 55 88 0 0 77777777777777 33 7777777777777777777777 0 5 0 0 7 7 0 0 5 88888 222222222222222222222222 2 555 0 2 8 0 00 0 0000 00000000000000000 8 444444444444444444444444444444 00 8 000 00 66666666666 22222222 0 8 8 2 0 8 4 8 44 6 6 8 8888 6 0 0 0
consensus : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACC-CTTTT--------TGC-GTGATAT-TGTG------AAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAA--C---AACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-AGGACG----C-CAANA-AT--GAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACTGA--A-T---T---GTTTTGTATAGACGTGCA-CGAT-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACATT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-A-A-TA----TCGTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATNCAAAAAGTATAGCAG--T-TAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
Reference ( family-710 ) : NAACCATACTCAATGAAAATGCNCNAAACTG-CTTGGTTTATTANTTTCANCGATCTATTGATCGTTCTCCACTTATTTACTTATACACCCAATTATAGACCNCTTTT--------TG--GTGAT-T-TGTG------AAGGACGTCCACC-GCCCATGATCTAGTTTCGTGAACCTCATGAACAAATCGTT-----GCTGACGATCGTTNTTAT--T-ATGAA-CCGGATA-AATGCGC----AC--------GTGGTAGC-AT----TTC-GTAA-CT--GA--TTAAGGCTGTTAAAA---CGGC--AAA-GAAC-C---AACNT----CATTTACGTT---ATGGGA-----------CGCCCGACGTTATGAAGCCGTCAGT-ATGGTAGCC-G-TGAAATAGTCATATAACG---TT--GTCGCGCACAGTACGCATT--TC--TCCACTATCATGCGGTTAGTNAGGCGACACCAAGNAACCGG-CTCT-C---T-GCT-GAC-GTCCACG---TCC-ANGACG----C-CAANA-AT--GAC-GTC-----CCGTCAGCAAGACCGCC-ATATTGTCCTTACGCACCTCCGAGATCGCTTTCAAACAGCAACACGGACTGCCCGGGAAGCAAGGGGATACAANCAGCAACG--CATTAGTCGNTCNACCGTGCGCCGACGCCTGTTGGCTGCAGGAATTNA-AGCCCATGGTCCATATAGGGGTAACGTATTGACATCAGAGAGGCGNCGTAAC-G-TGA---GTGGTGTCGTCGGCATCTACGATGGACGCAAGATCAGTGGAAAGGTGTTNTATTCACT----------T---GTTTTGTATAGACGTGCA-CGAT-GAAGGCGTAAAGTGTGGCGTCGCAGAGGTGAGCGTTACGTTGATTGCTGCGTCAGACAGCACGCACGGTGGGGACGGGGTAGTGTAATGGTGGTGGAAGGACGTCTGACAGCTCAGAGATACANTGATGAAAT-CTTGGAACCATGCGTTGTGCCCT-T-----C----GAA--C-A-C-AT-GACGTC-ACGCCGT--TTCAGCNAG-ACAACGTCGGGCCTCGT----TTC--AGCCAGAATAACGT--AAGCTACC---GCCCT-GTCGAGCATTTATGGNACCAGCTTCGNCGNCGAGTGTACAACGGACGTCACGTCATAAACAACGAGGCACAGTTGGTGCAGACACTGTTAGACGAGCGGGATGCCGTNCCACAATGCAGGATTACAGCGTCTCATCCGCAGTATGAGACG-----------C-----TGA---GGCCG---AC-GCAAACGGCGGCCACATACGNTACTGA-GTTTG-TGAACTTT-GGTTTC-AC-C-TTC-GACATT-AAGGCAATAAAATTC--CACAAA---A---A--TCACA-T-TC--AT--TTGCTTC---TAT--TGA-A-A-T-----TCGTT-A-AAAT-CTCTGAACATTATTTCAT-TTCAGTTTTGACATCCAAAAAGTATAGCAG--T-TAAAAATATAATGAGTATATTTCATGGTGCGTTTTCATTGACCGCCANTATA
gi|1 : AACTATAC-CAATGAAAATGCACAAAA-TG-TTTGGCTTATTAGTTTCAGTTACCCATT--TCGTTATTTACTTTTTTACATATAAACAAACTTATTGATCGCTTTTCAATGACATGACGTGAT-T-TGAG------AAGGACATCCGCT-GCCCATG------------------------CAAATCGTTATTTTGCTGACAATCCTTTTTAT--T-ATGAA-CCAGATA-AATGTAC----AC--------GTGGTGG--AT----TTC-ATAA-CT--GAGCTTTATATTATTAAAATTTCGAC--AAAAGAATTC---AACTT----CATTTACGTT---ATAGGA-----------CGCCCAACGTCATGAAGCCGTCAGT-ATGGTAGCC-G-GGAGATAGTCATATATCG---TT--GTTGCACACAGTATGCATTGTTC--TCCACTATCATGCAGTTAGTTAGGCGACACCAAGCAACCGG-CTCT-C---TTGCT-GATAGTCCACG---TCC-AGGACG----C-CAAAGTAT--GAC-ATC-----TCGTCAGCAAGACCACC-ACACTGTCCTTACGCACCTCCGAGATCGCTTTCAGACAACAACACGGACTGCCCAGGAAGCAAGGGGATATAAGCAGTAACG--CATAAATAGCTCCACCATGCGTCGACGCCTGTAAGATGCAGGCATTTC-AGCCTATGTTCCATATCGGGGTAACGTATTGACATCAGAGAGGCGACGTAAT-ACTGA---GTTGTGTCGTCGG-ATCTACGATGGACGCAAAATCAGTGGAAAGGTGTTCTTTTCACTGACGAGT---TCAGGTTTTGTATAGATATTCT-GGATTGGGGGCGTAAGGTGTGGCGTCTCCGAGGCGAGCGTTACGCAGATTGCTGCGTCAAACAGCATGCACGGTGGGGA-GTGGCAGTGTAATGGTGATGGCAGGTAGTCTGACGGCTCGAAGATACGTTGACGAAAT-CTTGGAACCATGTATTATACCCT-TTCTTCC----AAAT-C-ACC-AT-GTCGTC-ACGCAAT--TTCAGCAGG-ACAACGCTGGGCCAC-T----TTC--AGCCAGAATAACGT--AAG--ACCTGAGCCCT-ATTGAGCATTTATGGCACCAGC-TCGGCGGCGAGTGTACAATGGACGTCACGTCATCAACAACAAGGCACAGTTAGTGCAGACACTGTTAGAC-AGTGGGATGCCATGCCACAATACAGGATT-CAGCGTCTCATCCACAGTA------------------------TGA---GGCCG---AC-GCAAACGGCGGCCAC-T-CGCTACTGAGGTTTG-TGAACTTTCAGTTTC-AC-C-CTCTTTCATT-TAGGCATTAAAATTCAGCTCAAATGCA---A--TAACA-T-CC--AT--TTGCTTT---TAA--TGA-A-A-TA----TTGTT-GTAAGT-CCCTGAACATTATTTAAT-TTCAGTTTTGACATCCAAAAAGAAGAGCAGA-C-TAAAAATAGAATAAGTATATTTCATGGTGCGTTTTCATTGACCGCCAGTATA
gi|10 : c---GTGGTGTCGTCGGCATCTAAGATGAACACAAAATCATTGGAA---------------T----------T---GTTTTGTTTAGATGTGCATCCAA-GAAGGCGTAAAGTGTGGCATCGCCGAGGTGAGCGTTACGTAGATTGCTGCGTCAGACAGCATGCACGGTGGGGACGGGGTTGTGTAATGGT-GTGGaatataagactcctaaacagacgtttg
gi|11 : gtaaccgtcagttAAA---T---A--TCACA-T-TTCGAC--ATGCTTC---TAT--TGA-ATA-G-----TCGTT-A-AAAC-TTTTAAACATTATTTCATGTTTAATTTTGATATG-AAAAAGTATAGCAGTAT-CAAATATATACTGATTATTTTTGATGATGTTTTTATATTGACAGTCGTTACAgccggtataccactgcaccacagaacacacctggtagtggttgcaggcagtctga
gi|12 : GAAACCAAGCAATAGGTCTTT-TGAGT-GCT-GGC-GTC-ACGAAATCCGACGTCG----CACAACA-GTTTAACTGTA-----GTGTCAGCAGGAT-GCTTACATTAGACTCTCGCACCTCCGGAATCGCTTACGACAAGCAACAACAACGGCCCGGtg
gi|13 : TTTCAACGATCTATT--TCATACTCCACTTACTTACTAATACACCCAATTATAGAC----TCT--------TGC-GTGATAT-TGTG------AAGGGCATCCACT-ACCCATTTTCTAGATTCACGAATCT
gi|15 : ttttttTGACAGGTCATTGATACATTAATGAAATTCTTAGAACCATGCGCTGTGCCCT-T-----TCTGAGAAACC-A-CTAT-GACATC-ACATTGT--TTCAACAAG-ACAATGatt
gi|16 : CAAGTGTACAACGGACGTCACGTCATAAACAACAAGGCATAGTTGGTGCAGct
gi|2 : AATCATATTCAATAAAAATGCTTTAAACTG-CTTGGTTTGTCACTTT-ATT-ATC-ACTGATCGTTCTTCATTTATTCACGAATACACCCAATTATAGACCATTTTT--------CA--ATAACAT-TGTGTTTTCGAAGGACG-CCACCTGCCCATGACCTAGTTTCGTGAACC--ATCAA-AAATCATT-----GCTGACGATCATGCATGT--T-ATGAC-CCAGACA-CATGCCA----AC--------GTTGCAGC-AT----TT---TAATCTCGGA--TTAAAGCTGTTAAAA---CGCCTAGAA-GAAA-CTTGCACAT----TATTTACGTT---ATGGGAAAATTTGATGCCGTTCAACGTTATTAAGCCGTCGGT-GTGGTTGCC-GGTGAAATA-TAATATGATGAGGTT--G-CGCACACAATGCGTAT---------CACTATCATGCCGTTAGTCAAGAGACAACTGGAAACTGG-CTCT-A---T-GGTCGAC-CTCC-CA---TCC-------------CAGAA-AT--GGA-GTCGTGAACCATCAATAAGACCGGC-ATATTATCCTTACGCAACTCAGAGATTGCTTTCAAACAGCAACATGAAAT---CGGAAAGCAAGGGTAAACAAGCAGCAACG--CATTAGTCGATCAGTTGTACGCCGAAACTTTTTGGCTGCAGGAATTGACAGC----GG-------AGAGGTGATGGAT--GCAT------GGTGTCGT------TGA----------------CATTTACGATGGACACATTATCAGTGGAAAGGTATTTTATTCAC----------------TTTTGTACAGACATGTA-CGATGGAAGGTGTAAAGTATGGCGTCGCAAAGATAAACGGTATGTTGATTGGTGCGCAAGACAGCACGCACGATGAACAGTGGGTAGTGTTATTGT
gi|2 : acattaatatgtatTGATAGTAGTAGAAGGACGTCTGACAGCTCAGGAATAAAGCGATGAAAT-CTTTGAACCGCGCATTGTGC----------------AA--CAA-T-ATAGA--TCTACGCCCCCATTCGGCCAGAATAATAT----CCTAGT----TTCTGAGACAGAATAACGTTCAAGCTACT---GCTCTGGTCGAACATTTATGGGACCAGCTTTGTCGTCAGATGTGCAGCGGGCGTCACGTGACAAATAGCGAGGtcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|2 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatcccACAGCTTCTTAATTGCTATATGAGACG-----------CATATTTCAAACGGCCGTGAAC-GCAAATGGCGGCTACATACGGTACTGA--TTTG-TGAACTTT-GGATAC-ACGC-TTC-AACATTTAAGGCAATGAAATTC--CACAAA---A---ATCTCACA-TATC--ATTGTTTCTTC---TAT--TGA-G-GTT-----TCGTTAA-AAAG-CTCTGAA-AC--TTTCAT-T----TTTTG---TT-------TATTGC------------TATAATGAGTGTATGTAATGGTACGTTTTCACTGACCGagtggaataccccacccccaccctcacccacacctcaaataccgaagacagcttcttaattgctatatgagacgcatatttcaaacggccgtgaacgcaaatggcggctacatacggtactgatttgtgaactttggatacacgcttcaacatttaaggcaatgaaattccacaaaaatctcacatatcattgtttcttctattgaggtttcgttaaaaagctctgaaactttcattttttgtttattgctataatgagtgtatgtaatggtacgttttcactgaccgttt
gi|3 : acattaatatgtataatcatattcaataaaaatgctttaaactgcttggtttgtcactttattatcactgatcgttcttcatttattcacgaatacacccaattatagaccatttttcaataacattgtgttttcgaaggacgccacctgcccatgacctagtttcgtgaaccatcaaaaatcattgctgacgatcatgcatgttatgacccagacacatgccaacgttgcagcattttaatctcggattaaagctgttaaaacgcctagaagaaacttgcacattatttacgttatgggaaaatttgatgccgttcaacgttattaagccgtcggtgtggttgccggtgaaatataatatgatgaggttgcgcacacaatgcgtatcactatcatgccgttagtcaagagacaactggaaactggctctatggtcgacctcccatcccagaaatggagtcgtgaaccatcaataagaccggcatattatccttacgcaactcagagattgctttcaaacagcaacatgaaatcggaaagcaagggtaaacaagcagcaacgcattagtcgatcagttgtacgccgaaactttttggctgcaggaattgacagcggagaggtgatggatgcatggtgtcgttgacatttacgatggacacattatcagtggaaaggtattttattcacttttgtacagacatgtacgatggaaggtgtaaagtatggcgtcgcaaagataaacggtatgttgattggtgcgcaagacagcacgcacgatgaacagtgggtagtgttattgttcgggatggtttatatcaggacaccacacaaaacatccctgatagtagtagaaggacgtctgacagctcaggaataaagcgatgaaatctttgaaccgcgcattgtgcaacaatatagatctacgcccccattcggccagaataatatcctagtttctgagacagaataacgttcaagctactgctctggtcgaacatttatgggaccagctttgtcgtcagatgtgcagcgggcgtcacgtgacaaatagcgaggagtggaataccccacccccaccctcacccacacctcaaataccgaagCG---CTC-AAGACGATGTC-AAAGA-AT--GAT-GTC-----CCGACAGCAATACCGCC-ATTCTGTCCTTACGCACTTCCGAAATTGCTTTTAAAGAGCAACACGGACTGCGTAGGAAACAAAGGAATACAACCTGCAACGCACATCAGTCGATCAACTGTGCGTTAACGATTGTTGACTTCAAGAATTGA-AGAGCATGGTCCGTACAGGGGTAATTTATTGACCGCAGAGAAGCGCCGCAAG-A-TCA---GTGGttt
gi|3 : CGCAAGATCAGTGGGAAAGCGTGGTATTCGCTGATTAATCAAT---GTTTTGAATAGACATACA-CGAT-GGA------AAG-----CATCGCAGAGGTGGACGGTTTGCTGATTGCTGCGTAAGACAGCACTCACGATGTTGACGGAGTAGTGTAATGGTGgaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|3 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgcTGATAGCGGTTGAAGGATGTCTAACAGCTCAGAGATACAATGATGGAAT-CTTGGAATCATGATTTGTGTCCTGT-----C----GAA--G-A-C-GT-GACGCC-ACGTTGT--TTCAACCAG-ATAACATCAGA--TCGTCGGATTC--AGCCTGAATAACAT-----CTA---------------AGCAATTATGGAACCAGtatccatgttggtgctatatactgaaaccacaaaacacccctgatagcggttgaaggatgtctaacagctcagagatacaatgatggaatcttggaatcatgatttgtgtcctgtcgaagacgtgacgccacgttgtttcaaccagataacatcagatcgtcggattcagcctgaataacatctaagcaattatggaaccag
gi|4 : cgctcaagacgatgtcaaagaatgatgtcccgacagcaataccgccattctgtccttacgcacttccgaaattgcttttaaagagcaacacggactgcgtaggaaacaaaggaatacaacctgcaacgcacatcagtcgatcaactgtgcgttaacgattgttgacttcaagaattgaagagcatggtccgtacaggggtaatttattgaccgcagagaagcgccgcaagatcagtgggaaagcgtggtattcgctgattaatcaatgttttgaatagacatacacgatggaaagcatcgcagaggtggacggtttgctgattgctgcgtaagacagcactcacgatgttgacggagtagtgtaatggtgtatccatgttggtgctatatactgaaaccacaaaacaccccTTCACGAATCTATT--TCGTACTCCACTTACTTACTTATACACCCAATTATAGACCCCTTTTG-------TG--G--AT-T-TGTG------AAGGTCATCCACA-ACCCAT--TCTA--TTAGT----TTCATGAA---ATCTGT-----GC-GA--ACCGTTATTATACTGATAAAGACGGATATAACGAACTAAAACTACGTGGTGTGGTAGC-AT----TTCAATTA-TT--GGC-TTAAGGCT-TT--------GG---AAA-G---------ACAT----TCTTTACGTA---ATTGGA-----------CGCTTGAC--TATGCAGTCGTCATT-ATGGTAGCCTG-TGAAAT-GTCATATAA-----TTAGGTTGCGCTTAGAATGCACT--TCATTCCACAATCATG
gi|5 : ttctagaC--TTCACTACCATGCGATTAGTGAGACGACACCAAGAAACCGG-CTCTGC---T-GCT-GATTGTCCACG---TCA-AGGACG----C-CAATT-GT--GAC-GTC-----TCGTCAACAAGACCGTC-ATATTGTCCTTACGCACCCCCGAGA-----------CAGCAACACGGACTGACCAGGAAGCAAGGGGATGTAACCAGCAACG--CATTAGCCGCTCTACCGAACGCCGACGTCAGTTAGATGCCGGAATTTC-AGCCCATTATCCATATAGGGGTAACGTATTGACACCAGAGAGGCGACGTAACAG-TGAGTTGTGGTGTCGTCTGCCTCAACGATGGta
gi|6 : tgttctcaTAAACGAGCGGGATGCCGTCCCACAATGCAGGACT-CAGCGTCTCATCCGCAGTATGAGGCGTATTTGCCAGTC-----TGT---AGTAG---AC-GCAAACGGCGGCCACACTTGTTACTGA-GTTTGCTGAACTCA-G--TTC-A---------------AATGCA-TAAAATCC------------------------------AT--TTGCT-C---TTTCATGA-A-A-TATTTGTTGTT-A-G--T-ACCTGAGCATTATTTTAT-TTCAGTTTTGACATCCAAAAAGTAGAGCAG--TCTAAAAATATAATAAGTATATTACATGGTGCGTTTTCATTGACCGCCAGTATA
gi|7 : AATGAAAATGCCCCAAACTGACTT--TATATTATTTTCACCAATCAA--GAGCGTTCT----TTATTTACTTGTACGTCCATTTC---ACC-----T--------TGC-GTGAA-TATGTG------AATGATG---AAT-TCCTTTGATCTAGTTTCGTGAACCTCGTG--CAAATCGT--------TAACA--CGCTG--------------CC-------ATGTGC----AC--------GTGGTAGTAATTAAATTC-GTAT-C-------TTGAGGCTGTTAAAA----GGC--CAA-GAA--C---AACCTTGCACAGGGACGTTTGAATGG-------------CGCCCAACGTAACGAAG-CGTCAGTGATGctgactttcaatttcataaaaaagggacgtg
gi|8 : ttgatacatttgtgtgaGATTACAACGTCTTATTCGTAGTATAACACG-----------C-----TGA---TACTG---ACTGCAAACGGTGGTCACATACGGCACTTA--TTTG-TGAACTTT-GATTTTAAC-CGTTC-GACATTGAAGGCAATAAAATTC--CATAAA---AAAGA--TCACATT-TC--AT--TTGTTTCTTATAT--TGGTC-A-T-----TCTTT-A-AACTACTCTTAAACTTAT----T-TTCAATTGTGACATATAAGA--TATAGCAG--TATCGAAAAATAATGATTGCATTTCATGGTGC-TTCTCTTTGGCTGTCATTATAactattatcatgaagttgc
gi|9 : ctGTTGACTGCAGGAATTAA-TGTTCATGATCTATATAGGGGTCATGTGTTGACATCAGAGAGACGCCGTAACTG-TGA---GTAATGATGTCGACATCTGCGATGGATACAAGACCAATAG---GATGTTGTACCCA-T----------T---G------AT-GA-GTGCA-AG---GAATACGAAAAGTATAGCGTCGTAGAGGTGAGCGTTAATTTGAGTGCTCCGCCAGACAGCACGCACG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TGACAGCAAGCACAATGGGGGAAGGGCCTGAGTCATGGTGTGTGTTGGTGGTGTATTTTGGCAGCACAAAACACCCCTGATAGTGGTTGAAGGAGGCCTG