lowQualScore : 1 1111 1 2222222222222222 11 2 1 1111111111 1 1 8888888888 1111 11 333333333333333333 1111
lowQualScore : 6 3 5555 6 6 3 2222222222222222 3 3 555 3 44 0 6 3 8 7 3 0 2 33 1 555 3 555 2222222222 3 3 6 3 3 2 55 7 3 8 0 7777777777 1 1 3333 66 1 333333333333333333 4 6 2222
lowQualScore : . . .... . . . ................ . . ... . .. . . . . . . . . .. . ... . ... .......... . . . . . . .. . . . . .......... . . .... .. . .................. . . ....
lowQualScore : 0 8 7777 2 6 3 1111111111111111 3 6 444 1 77 5 7 1 8 4 1 6 9 99 6 888 3 888 6666666666 8 3 7 3 3 2 88 2 3 5 7 0000000000 3 6 7777 99 7 000000000000000000 9 0 1111
consensus : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTTG-AATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TG-TGGTGAATTTTCATTG-TTTTTAA-TGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATG---TAG-T---C----TA----TTGAAA-AGTAA-A-AATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAA--CAGTATATCCTCAGCCCATAGTA--G-C--G-GT--G-TCAGAACAAGAATTGCCGGGCGAAAT----AGCCC
Reference ( gi|4 ) : GAGCAGTCCCT--GGTTTTGTGGGTTGAAGGTTG-AATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGCAAACCAGAGATGATC---TG-TGAGGAATATCCATTG-TTGTTGA-TGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATG---TAG-T---C----TG----TTAAAA-AGT-A-A-AATTTGCA-TTTTGTGCAAAATTAAACTTCATTA-TTGAAACAAAATGAAATTATATTTTTAG--TAGTAGATCCTCAGCCCATAATA--G-C--G-GT--G-TCAGAACAAGAATTGCCAGGTAAAAT----AGCCC
gi|6 : GGGCTGTCCTT--AATTTTGTGAGTAGAAGGTTG-AATTTTCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCAGAAACAATC---TG-TGGTGAAT-TTTATTG-TT-T----TAAAAAATAGACTGTATTATTGTGT--T--TGAGGCCCAACAATG---TAG-T---C----TA----TTAAAA-AGTAA-A-AATTTGCA-GTTTGTGCCACATTTAACTTCATAA-TTAAAACAA---------ATGTTTTTAA--CAGTATATCCTCAGCTCGTAGTA--G-CATG-TT--G-TCAGAACAAGAATTGACAAGCGAAAT----
gi|5 : GGGCTGTCCCTTAGATTTTGTG----------TG----TTCCAAA----------------GTAAAAGGGGTTTAAAAG-GGCAAACCAGAGATAATC---TG-TGGTGAATTTTCATTG-TTTTTTT-AGCAAAATAGACAGCATAATT-TGT--TTATGAGACCCAACAGTG---TAG-T---C----TA----ATGAAA-AGTAA-A-AATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTCAGAC------------------------AGTTGATCATCAGCCCATAGTATTT-C--G-TG--G-TCAGAACAAGAATAGCCTTGCGAAAT----
gi|10 : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTTG-AATTTCCAAA----------------GTAAAAGGGGCCTGAAGG-GGAAAACCAGAGACGACC---TGTTGTGAAAT-TTTATTG-TTTTTAA-CG-AAAATAGATTGCATTCTT-TGC--ATATGAG-----ACAAT-----------------------------------------TTGCG-TTGTGTACCAAATTAAACTTCATTA-TTAAAAC------AAATTATGTTTTAAA--TGGTTTATCCTccctggcccccccagcccttggggacagccct
gi|18 : GGGCTGCCCCT--TATTTTGGGAGTAGAAAGTTG-AATTTTCAAA----------------t
gi|9 : aGCTGTCCCT--CATTTTGTGAGTTGAAGGTTG-AATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGTGAACCAGAGACGATC---TG-TGGTGAATTTACATTG-TTTTTAA-TGTAAAACAGATGGCATTATT-TGT--TTATGAGACCGAATAATG---TAG-T---C----TA----TTGAAA-AGT-A-ACAAATTGCA-TTTTGTGCCAAATTAAACCTCATTA-TTAATACAAAAT
gi|2 : GCTGTCATT--AATTTTGCAGGA-GAAGGTTG-AATTT-----------------------AAAAGGGGTTTGAAGA-GGCAAACCAGAGATGATC---CG-TGACGATTTTTCATTGGTTTTTAA-TTACAAATAGATTGCATTGTT-TGT--TTTCGAGACCCAACAATG---TAG-T---C----TA----CTGAAA-AGTAA-A-AATTTGCA-ATTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAATTTAAT--ATCCTCGGTGGATAGTA--G-C--A-GTTGG-TCAGATCAAGAATTGCCGGGTGAAAT----
gi|11 : GCTGTCCCT--AATTTTGTGAGTAGAAGGTTG-AACTTCCAAG----------------GTAAAAGGG-TTTGAAGG-AGCATTCCTGAGATGGTC---TG-TGGATAAGTTTTATTG-TTTTTAA-TGAATAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTACTAGTT---T----TA----TTGAAA-ATT-A-A----TTG---------AC-AAATTAAGCTTCATTA-TTAAAACAAccacggcccggcccttctggacagtcctgcc
gi|1 : gCAGTCCCT--AATTTTGTGAGTAGAAGGGTG-AATTTCCAAA----------------GTAAAATGGATCTGAAGG-GGCAAACCGGAGACTATC---TG-TGATGAATTTTCTTTG-TTTTTAA-CGAAAAATAGACTACATTATT-TGT--TTACGAGACCGAACAATG---TGG-T---C----TA----TTAAAA-AGTAA-A-AATTCGCATTTTTTTGCCAAATTTAACTTCATTATTTAAAACAAAA------TATCTGTTTAA--CGGTATATCCTCAGTCCATAGAA--GCC--T-GTA-G-TCAGAACAAGAATAATTTGGTGAAATCCCCAGCCCta
gi|3 : tGTCCCT--AATTTTGTGAGTATAAGGTTG-AATTTCCAAAAAAAAGGGTTTGAAGGGTAAAAAGGGTTTGAAGGAGACAAACTGGAGACAATC---TG-TGGTGAATTTTCATTG-TTTTTAA-TGAAAAATATACTGCATTATT-TATTATTATGAGACCCAACAGCG---TAG-T---C----TA----TTGAAA-GGTAA-A-AATTTGCA-TTTTGTGCCAAATTA--------------AAACAAAA------TACATTTTGAG--CAGTAGACCCACAGCTCATATTA--GCC--A-GTG-G-TCAGAACAAAAATTGCCAGGTGAAAT----ccggtcagccatggagcggctctgc
gi|12 : ttGTCCCT--AGTTTTGTGAGTAGAAAGTTG-AATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GCCAAACTGGAGATAGTC---TG-TGTTGAATTTTCATTG-TTTGTAA-TGAATAATAGACTGCAGTATT-TGT--TTATGATACCCAACAATA---TAT-T---C----TA----TTGAAA-AGT-A-A-AA-----A--TTTGTGCCAAATTAAA----ATTA-Tctgctc
gi|14 : gttGTCCCT--AACTTTGTGAGTAGAAGGTTGGAATTTCCAAA----------------GTAAA-GGAGTTTAAAGG-GGCGAACTGGAGATGATC---TG-TGATGAATTTTCATTG-TTTTTAA-TGAAAAATAGACTGCATTATT-TGT--TTATGTGACC
gi|7 : ctTGTGGGTAGAATGTTG-AATTTCCAA-----------------GTAAAAGGGATTTGAGGG-GGCAAACCGGAGACCATCATTTA-GGGGGAATTTTCATTG-TTTTTAA-TGAAAA-TATACTGCATTATT-TGT--TC--GAGACCCAACAATA---TTG-T---C----TA----TTGAAA-AGT-ATA-AATTTGCA-TTTTGTACCAAATTCAACTTCACTA-TTTAAACAAAAaa
gi|8 : tcgAAGCCGGAGATGATC---TG-TGGTGAATTTTCATTC-TT-TTAACTTAAAAAAAGAC-ATATTA-----T--TTATGACAGCCAACAATG---TAG-TGTACCTGGTG----TTCAAA-AGT-A-A-AAaaagtagttggtggtcaaaacaaggatttccgcatgaaattcccaccccggcccttagggacagccctgg
gi|13 : agctgtcatggccccatagcctatcagagtatgatggggtttgaagatcaaatgctgtcatcaatgggttttggggaggggtgggtggcagtttgaagccctcttaAAGCCAGAGACGTTC---TG-TGGTGGGTTTTTCTTG-TTTTTAC-AGTAAAACTAACTGCATT-TT-TAT--TGATGACAACCATTAATgtaaa
gi|6 : gctgtcaaggtgccatggtgtgtcggagtgaggtgaggtttgaaggtgcagatgctcccacctcccctcctcagAATAGACTACATTGTT-GGG--CC-TCAAACACAATAATA---CAG-T---C----TATTTTTTAAAACAAT-A-A-AATTaagtggactcaaaatcaataatgataata
gi|19 : gggctgtccttaattttgtgagtagaaggttgaattttcaaagtaaaaggggtttgaaggggcaaaccagaaacaatctgtggtgTGCA-TTT-GTGTTGAATTGAACTTCACTA-TTAAAACAAAATaaaaagtaaaaatttgcagtttgtgccacatttaacttcataattaaaacaaatgtttttaacagtatatcctcagctcgtagtagcatgttgtcagaacaagaattgacaagcgaaat
gi|15 : TTGTGCCAAATTAA--TTCATTA-TTAAAACAAAAT-----------TTTAA--TAGTA----------------T---G-C--G-GT--GGTCAGAACAAGAATTGCCGTGTGAAAT----at
gi|16 : aTTAACCTATAGTA--G-T--AAGT--GGTCAGAACACAAATTGCTGGGTGAAAT----ccatggtcctcagtccttaaggacagttctag
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ATTTGTATCAATATTTTATTAATGTATTTGATAGCAAATGGTAAGAAATCGATGATCTGTTATTGACCCAGTG
Alignments
lowQualScore : 2222222222222222 1111111 1111111 2222222222 1111
lowQualScore : 44 3 0000000000000000 3 555 2 3 2 33 555 3 0000000 0 0 44 3 1111111 0 0 22 0 0 66 5555555555 5 2 2 0000
lowQualScore : .. . ................ . ... . . . .. ... . ....... . . .. . ....... . . .. . . .. .......... . . . ....
lowQualScore : 66 1 4444444444444444 3 000 9 4 9 99 444 1 0000000 5 5 66 1 2222222 2 2 11 4 2 99 1111111111 0 2 0 6666
consensus : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACGGTATATCCTCAGCCCATAGTA--G-C--G-GT--G-TCAGAACAAGAATTGCCGGGTGAAAT----AGCCC
Reference ( family-6713 ) : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACAGTATATCCTCAGCCCATAGTA--G-C--G-GT--G-TCAGAACAAGAATTGCCGGGCGAAAT----AGCCC
gi|1 : GTCCCT--AATTTTGTGAGTAGAAGGGT-GAATTTCCAAA----------------GTAAAATGGATCTGAAGG-GGCAAACCGGAGACTATC---TGTGATGAATTTTCTTTG-TTTTTAACGAAAAATAGACTACATTATT-TGT--TTACGAGACCGAACAATGTG---GTCT-A-------TTAAAAAGTAAAAATTCGCATTTTTTTGCCAAATTTAACTTCATTATTTAAAACAAAA------TATCTGTTTAACGGTATATCCTCAGTCCATAGAA--GCC--T-GTA-G-TCAGAACAAGAATAATTTGGTGAAATCCCCAGCCC
gi|10 : tcaGGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGCCTGAAGG-GGAAAACCAGAGACGACC---TGTTGTGAAATTTTATTG-TTTTTAACG-AAAATAGATTGCATTCTT-TGC--ATATGAG-----ACAAT-------------------TTG---------------CG-TTGTGTACCAAATTAAACTTCATTA-TTAAAACAAAT------TATGTTTTAAATGGTTTATCCTccggtcagccatggagcggctctgc
gi|11 : GGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAACTTCCAAG----------------GTAAAAGGG-TTTGAAGG-AGCATTCCTGAGATGGTC---TGTGGATAAGTTTTATTG-TTTTTAATGAATAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTACTAGTTTTA-------TTGAAAATTAA----TTG-A---------CAAATTAAGCTTCATTA-TTAAAACAAt
gi|12 : GTTGTCCCT--AGTTTTGTGAGTAGAAAGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GCCAAACTGGAGATAGTC---TGTGTTGAATTTTCATTG-TTTGTAATGAATAATAGACTGCAGTATT-TGT--TTATGATACCCAACAATATA---TTCT-A-------TTGAAAAGTAAAAA--------TTTGTGCCAAATTAAA----ATTA-Tta
gi|13 : AAGCCAGAGACGTTC---TGTGGTGGGTTTTTCTTG-TTTTTACAGTAAAACTAACTGCATT-TT-TAT--TGATGACAACCATTAATA-A---GTGG-A-------CTCAAAATCAATAAT
gi|14 : gctgtcaaggtgccatggtgtgtcggagtgaggtgaggtttgaaggtgcagatgctcccacctcccctcctcagCTGTCCCT--AACTTTGTGAGTAGAAGGTTGGAATTTCCAAA----------------GT-AAAGGAGTTTAAAGG-GGCGAACTGGAGATGATC---TGTGATGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGTGACCgataata
gi|15 : TTGTGCCAAATTAA--TTCATTA-TTAAAACAAAA-----------TTTTAATAGTAT-------------------G-C--G-GTG-G-TCAGAACAAGAATTGCCGTGTGAAAT----aa
gi|16 : aTTAACCTATAGTA--G-T--AAGT--GGTCAGAACACAAATTGCTGGGTGAAAT----ccatggtcctcagtccttaaggacagttctag
gi|18 : agagGGGCTGCCCCT--TATTTTGGGAGTAGAAAGTT-GAATTTTCAAA----------------cccttacccttggggacagccct
gi|19 : aTGCA-TTT-GTGTTGAATTGAACTTCACTA-TTAAAACAAAA------TAT
gi|2 : GCTGTCATT--AATTTTGC-AGGAGAAGGTT-GAATTT-----------------------AAAAGGGGTTTGAAGA-GGCAAACCAGAGATGATC---CGTGACGATTTTTCATTGGTTTTTAATTACAAATAGATTGCATTGTT-TGT--TTTCGAGACCCAACAATGTA---GTCT-A-------CTGAAAAGTAAAAATTTGCA-ATTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAATTTAATATCCTCGGTGGATAGTA--G-C--A-GTTGG-TCAGATCAAGAATTGCCGGGTGAAAT----
gi|3 : TGTCCCT--AATTTTGTGAGTATAAGGTT-GAATTTCCAAAAAAAAGGGTTTGAAGGGTAAAAAGGGTTTGAAGGAGACAAACTGGAGACAATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATATACTGCATTATT-TATTATTATGAGACCCAACAGCGTA---GTCT-A-------TTGAAAGGTAAAAATTTGCA-TTTTGTGCCAA-------------A-TTAAAACAAAA------TACATTTTGAGCAGTAGACCCACAGCTCATATTA--GCC--A-GTG-G-TCAGAACAAAAATTGCCAGGTGAAAT----ccacggcccggcccttctggacagtcctgcc
gi|4 : tGAGCAGTCCCT--GGTTTTGTGGGTTGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGCAAACCAGAGATGATC---TGTGAGGAATATCCATTG-TTGTTGATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-G-------TTAAAAAGT-AAAATTTGCA-TTTTGTGCAAAATTAAACTTCATTA-TTGAAACAAAATGAAATTATATTTTTAGTAGTAGATCCTCAGCCCATAATA--G-C--G-GT--G-TCAGAACAAGAATTGCCAGGTAAAAT----AGCCCctgctc
gi|5 : GGGCTGTCCCTTAGATTTTGTG----------T-G---TTCCAAA----------------GTAAAAGGGGTTTAAAAG-GGCAAACCAGAGATAATC---TGTGGTGAATTTTCATTG-TTTTTTTAGCAAAATAGACAGCATAATT-TGT--TTATGAGACCCAACAGTGTA---GTCT-A-------ATGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTCAGACA------------GTT-------G---ATCATCAGCCCATAGTATTT-C--G-TG--G-TCAGAACAAGAATAGCCTTGCGAAAT----
gi|6 : GGGCTGTCCTT--AATTTTGTGAGTAGAAGGTT-GAATTTTCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCAGAAACAATC---TGTGGTGAATTTT-ATTG-TTT----TAAAAAATAGACTGTATTATTGTGT--T--TGAGGCCCAACAATGTA---GTCT-A-------TTAAAAAGTAAAAATTTGCA-GTTTGTGCCACATTTAACTTCATAA-TTAAAACAA---------ATGTTTTTAACAGTATATCCTCAGCTCGTAGTA--G-CATG-TT--G-TCAGAACAAGAATTGACAAGCGAAAT----ccctggcccccccagcccttggggacagccct
gi|7 : TGTGGGTAGAATGTT-GAATTTCCAA-----------------GTAAAAGGGATTTGAGGG-GGCAAACCGGAGACCATCATTTAGGGGGAATTTTCATTG-TTTTTAATG-AAAATATACTGCATTATT-TGT--T--CGAGACCCAACAATATT---GTCT-A-------TTGAAAAGTATAAATTTGCA-TTTTGTACCAAATTCAACTTCACTA-TTTAAACAAAA------
gi|8 : tcgAAGCCGGAGATGATC---TGTGGTGAATTTTCATTC-TTTTAACTTAAAAAAAGAC-ATATTA-----T--TTATGACAGCCAACAATGTA---GTGT-ACCTGGTGTTCAAAAGTAAAAGTaaagtagttggtggtcaaaacaaggatttccgcatgaaattcccaccccggcccttagggacagccctgg
gi|9 : agctgtcatggccccatagcctatcagagtatgatggggtttgaagatcaaatgctgtcatcaatgggttttggggaggggtgggtggcagtttgaagccctcttaGCTGTCCCT--CATTTTGTGAGTTGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGTGAACCAGAGACGATC---TGTGGTGAATTTACATTG-TTTTTAATGTAAAACAGATGGCATTATT-TGT--TTATGAGACCGAATAATGTA---GTCT-A-------TTGAAAAGTAACAAATTGCA-TTTTGTGCCAAATTAAACCTCATTA-TTAATACAAAA------Taaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTGTATCAATATTTTATTAATGTATTTGATAGCAAATGGTAAGAAATCGATGATCTGTTATTGACCCAGTG
Alignments
lowQualScore : 2222222222222222 1111111 1111111 2222222222222
lowQualScore : 44 3 0000000000000000 3 555 2 3 2 33 555 3 0000000 0 0 44 3 4444444 1 1 999999 333 5555555555555 4 11 9999
lowQualScore : .. . ................ . ... . . . .. ... . ....... . . .. . ....... . . ...... ... ............. . .. ....
lowQualScore : 66 1 4444444444444444 3 000 9 4 9 99 444 1 0000000 5 5 66 1 7777777 9 9 333333 999 9999999999999 4 00 4444
consensus : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACGGTATATCCTCAGCCCATAGTA--G-C--G-GTG-G-TCAGAACAAGAATTGCCGGGTGAAAT----AGCCC
Reference ( family-6713 ) : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACGGTATATCCTCAGCCCATAGTA--G-C--G-GT--G-TCAGAACAAGAATTGCCGGGTGAAAT----AGCCC
gi|1 : GTCCCT--AATTTTGTGAGTAGAAGGGT-GAATTTCCAAA----------------GTAAAATGGATCTGAAGG-GGCAAACCGGAGACTATC---TGTGATGAATTTTCTTTG-TTTTTAACGAAAAATAGACTACATTATT-TGT--TTACGAGACCGAACAATGTG---GTCT-A-------TTAAAAAGTAAAAATTCGCATTTTTTTGCCAAATTTAACTTCATTATTTAAAACAAAA------TATCTGTTTAACGGTATATCCTCAGTCCATAGAA--GCC--T-GTA-G-TCAGAACAAGAATAATTTGGTGAAATCCCCAGCCC
gi|10 : tcaGGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGCCTGAAGG-GGAAAACCAGAGACGACC---TGTTGTGAAATTTTATTG-TTTTTAACG-AAAATAGATTGCATTCTT-TGC--ATATGAG-----ACAAT-------------------TTG---------------CG-TTGTGTACCAAATTAAACTTCATTA-TTAAAACAAAT------TATGTTTTAAATGGTTTATCCTccggtcagccatggagcggctctgc
gi|11 : GGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAACTTCCAAG----------------GTAAAAGGG-TTTGAAGG-AGCATTCCTGAGATGGTC---TGTGGATAAGTTTTATTG-TTTTTAATGAATAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTACTAGTTTTA-------TTGAAAATTAA----TTG-A---------CAAATTAAGCTTCATTA-TTAAAACAAt
gi|12 : GTTGTCCCT--AGTTTTGTGAGTAGAAAGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GCCAAACTGGAGATAGTC---TGTGTTGAATTTTCATTG-TTTGTAATGAATAATAGACTGCAGTATT-TGT--TTATGATACCCAACAATATA---TTCT-A-------TTGAAAAGTAAAAA--------TTTGTGCCAAATTAAA----ATTA-Tta
gi|13 : AAGCCAGAGACGTTC---TGTGGTGGGTTTTTCTTG-TTTTTACAGTAAAACTAACTGCATT-TT-TAT--TGATGACAACCATTAATA-A---GTGG-A-------CTCAAAATCAATAAT
gi|14 : gctgtcaaggtgccatggtgtgtcggagtgaggtgaggtttgaaggtgcagatgctcccacctcccctcctcagCTGTCCCT--AACTTTGTGAGTAGAAGGTTGGAATTTCCAAA----------------GT-AAAGGAGTTTAAAGG-GGCGAACTGGAGATGATC---TGTGATGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGTGACCgataata
gi|15 : TTGTGCCAAATTAA--TTCATTA-TTAAAACAAAA-----------TTTTAATAGTAT-------------------G-C--G-GTG-G-TCAGAACAAGAATTGCCGTGTGAAAT----aa
gi|16 : aTTAACCTATAGTA--G-T--AAGT--GGTCAGAACACAAATTGCTGGGTGAAAT----ccatggtcctcagtccttaaggacagttctag
gi|18 : agagGGGCTGCCCCT--TATTTTGGGAGTAGAAAGTT-GAATTTTCAAA----------------cccttacccttggggacagccct
gi|19 : aTGCA-TTT-GTGTTGAATTGAACTTCACTA-TTAAAACAAAA------TAT
gi|2 : GCTGTCATT--AATTTTGC-AGGAGAAGGTT-GAATTT-----------------------AAAAGGGGTTTGAAGA-GGCAAACCAGAGATGATC---CGTGACGATTTTTCATTGGTTTTTAATTACAAATAGATTGCATTGTT-TGT--TTTCGAGACCCAACAATGTA---GTCT-A-------CTGAAAAGTAAAAATTTGCA-ATTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAATTTAATATCCTCGGTGGATAGTA--G-C--A-GTTGG-TCAGATCAAGAATTGCCGGGTGAAAT----
gi|3 : TGTCCCT--AATTTTGTGAGTATAAGGTT-GAATTTCCAAAAAAAAGGGTTTGAAGGGTAAAAAGGGTTTGAAGGAGACAAACTGGAGACAATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATATACTGCATTATT-TATTATTATGAGACCCAACAGCGTA---GTCT-A-------TTGAAAGGTAAAAATTTGCA-TTTTGTGCCAA-------------A-TTAAAACAAAA------TACATTTTGAGCAGTAGACCCACAGCTCATATTA--GCC--A-GTG-G-TCAGAACAAAAATTGCCAGGTGAAAT----ccacggcccggcccttctggacagtcctgcc
gi|4 : tGAGCAGTCCCT--GGTTTTGTGGGTTGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGCAAACCAGAGATGATC---TGTGAGGAATATCCATTG-TTGTTGATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-G-------TTAAAAAGT-AAAATTTGCA-TTTTGTGCAAAATTAAACTTCATTA-TTGAAACAAAATGAAATTATATTTTTAGTAGTAGATCCTCAGCCCATAATA--G-C--G-GT--G-TCAGAACAAGAATTGCCAGGTAAAAT----AGCCCctgctc
gi|5 : GGGCTGTCCCTTAGATTTTGTG----------T-G---TTCCAAA----------------GTAAAAGGGGTTTAAAAG-GGCAAACCAGAGATAATC---TGTGGTGAATTTTCATTG-TTTTTTTAGCAAAATAGACAGCATAATT-TGT--TTATGAGACCCAACAGTGTA---GTCT-A-------ATGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTCAGACA------------GTT------G----ATCATCAGCCCATAGTATTT-C--G-TG--G-TCAGAACAAGAATAGCCTTGCGAAAT----
gi|6 : GGGCTGTCCTT--AATTTTGTGAGTAGAAGGTT-GAATTTTCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCAGAAACAATC---TGTGGTGAATTTT-ATTG-TTT----TAAAAAATAGACTGTATTATTGTGT--T--TGAGGCCCAACAATGTA---GTCT-A-------TTAAAAAGTAAAAATTTGCA-GTTTGTGCCACATTTAACTTCATAA-TTAAAACAA---------ATGTTTTTAACAGTATATCCTCAGCTCGTAGTA--G-CATG-TT--G-TCAGAACAAGAATTGACAAGCGAAAT----ccctggcccccccagcccttggggacagccct
gi|7 : TGTGGGTAGAATGTT-GAATTTCCAA-----------------GTAAAAGGGATTTGAGGG-GGCAAACCGGAGACCATCATTTAGGGGGAATTTTCATTG-TTTTTAATG-AAAATATACTGCATTATT-TGT--T--CGAGACCCAACAATATT---GTCT-A-------TTGAAAAGTATAAATTTGCA-TTTTGTACCAAATTCAACTTCACTA-TTTAAACAAAA---------------AA------------AG----TAGT-----T--G-GTG-G-TCAAAACAAGGATTTCCGCATGAAAT----
gi|8 : tcgAAGCCGGAGATGATC---TGTGGTGAATTTTCATTC-TTTTAACTTAAAAAAAGAC-ATATTA-----T--TTATGACAGCCAACAATGTA---GTGT-ACCTGGTGTTCAAAAGTAAAAGTtcccaccccggcccttagggacagccctgg
gi|9 : agctgtcatggccccatagcctatcagagtatgatggggtttgaagatcaaatgctgtcatcaatgggttttggggaggggtgggtggcagtttgaagccctcttaGCTGTCCCT--CATTTTGTGAGTTGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGTGAACCAGAGACGATC---TGTGGTGAATTTACATTG-TTTTTAATGTAAAACAGATGGCATTATT-TGT--TTATGAGACCGAATAATGTA---GTCT-A-------TTGAAAAGTAACAAATTGCA-TTTTGTGCCAAATTAAACCTCATTA-TTAATACAAAA------Taaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTGTATCAATATTTTATTAATGTATTTGATAGCAAATGGTAAGAAATCGATGATCTGTTATTGACCCAGTG
Alignments
lowQualScore : 2222222222222222 1111111 1111111111 1111111
lowQualScore : 44 3 0000000000000000 3 555 2 3 2 33 555 3 0000000 0 0 44 3 2222222222 1 999999 333 8888888 4 0 11 9999
lowQualScore : .. . ................ . ... . . . .. ... . ....... . . .. . .......... . ...... ... ....... . . .. ....
lowQualScore : 66 1 4444444444444444 3 000 9 4 9 99 444 1 0000000 5 5 66 1 6666666666 9 333333 999 4444444 4 1 00 4444
consensus : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACGGTATATCCTCAGCCCATAGTA--G-CG-G-TGGTCAGAACAAGAATTGCCGGGTGAAAT----AGCCC
Reference ( family-6713 ) : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACGGTATATCCTCAGCCCATAGTA--G-CG-G-TGGTCAGAACAAGAATTGCCGGGTGAAAT----AGCCC
gi|1 : GTCCCT--AATTTTGTGAGTAGAAGGGT-GAATTTCCAAA----------------GTAAAATGGATCTGAAGG-GGCAAACCGGAGACTATC---TGTGATGAATTTTCTTTG-TTTTTAACGAAAAATAGACTACATTATT-TGT--TTACGAGACCGAACAATGTG---GTCT-A-------TTAAAAAGTAAAAATTCGCATTTTTTTGCCAAATTTAACTTCATTATTTAAAACAAAA------TATCTGTTTAACGGTATATCCTCAGTCCATAGAA--GCCT-G-TAGTCAGAACAAGAATAATTTGGTGAAATCCCCAGCCC
gi|10 : tcaGGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGCCTGAAGG-GGAAAACCAGAGACGACC---TGTTGTGAAATTTTATTG-TTTTTAACG-AAAATAGATTGCATTCTT-TGC--ATATGAG-----ACAAT-------------------TTG---------------CG-TTGTGTACCAAATTAAACTTCATTA-TTAAAACAAAT------TATGTTTTAAATGGTTTATCCTccggtcagccatggagcggctctgc
gi|11 : GGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAACTTCCAAG----------------GTAAAAGGG-TTTGAAGG-AGCATTCCTGAGATGGTC---TGTGGATAAGTTTTATTG-TTTTTAATGAATAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTACTAGTTTTA-------TTGAAAATTAA----TTG-A---------CAAATTAAGCTTCATTA-TTAAAACAAt
gi|12 : GTTGTCCCT--AGTTTTGTGAGTAGAAAGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GCCAAACTGGAGATAGTC---TGTGTTGAATTTTCATTG-TTTGTAATGAATAATAGACTGCAGTATT-TGT--TTATGATACCCAACAATATA---TTCT-A-------TTGAAAAGTAAAAA--------TTTGTGCCAAATTAAA----ATTA-Tta
gi|13 : AAGCCAGAGACGTTC---TGTGGTGGGTTTTTCTTG-TTTTTACAGTAAAACTAACTGCATT-TT-TAT--TGATGACAACCATTAATA-A---GTGG-A-------CTCAAAATCAATAAT
gi|14 : gctgtcaaggtgccatggtgtgtcggagtgaggtgaggtttgaaggtgcagatgctcccacctcccctcctcagCTGTCCCT--AACTTTGTGAGTAGAAGGTTGGAATTTCCAAA----------------GT-AAAGGAGTTTAAAGG-GGCGAACTGGAGATGATC---TGTGATGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGTGACCgataata
gi|15 : TTGTGCCAAATTAA--TTCATTA-TTAAAACAAAA------T-----TTTAATAGTAT-------------------G-CG-G-TGGTCAGAACAAGAATTGCCGTGTGAAAT----aa
gi|16 : aTTAACCTATAGTA--G-TAAG-TGGTCAGAACACAAATTGCTGGGTGAAAT----ccatggtcctcagtccttaaggacagttctag
gi|18 : agagGGGCTGCCCCT--TATTTTGGGAGTAGAAAGTT-GAATTTTCAAA----------------cccttacccttggggacagccct
gi|19 : aTGCA-TTT-GTGTTGAATTGAACTTCACTA-TTAAAACAAAA------TAT
gi|2 : GCTGTCATT--AATTTTGC-AGGAGAAGGTT-GAATTT-----------------------AAAAGGGGTTTGAAGA-GGCAAACCAGAGATGATC---CGTGACGATTTTTCATTGGTTTTTAATTACAAATAGATTGCATTGTT-TGT--TTTCGAGACCCAACAATGTA---GTCT-A-------CTGAAAAGTAAAAATTTGCA-ATTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAATTTAATATCCTCGGTGGATAGTA--G-CA-GTTGGTCAGATCAAGAATTGCCGGGTGAAAT----
gi|3 : TGTCCCT--AATTTTGTGAGTATAAGGTT-GAATTTCCAAAAAAAAGGGTTTGAAGGGTAAAAAGGGTTTGAAGGAGACAAACTGGAGACAATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATATACTGCATTATT-TATTATTATGAGACCCAACAGCGTA---GTCT-A-------TTGAAAGGTAAAAATTTGCA-TTTTGTGCCAA-------------A-TTAAAACAAAA------TACATTTTGAGCAGTAGACCCACAGCTCATATTA--GCCA-G-TGGTCAGAACAAAAATTGCCAGGTGAAAT----ccacggcccggcccttctggacagtcctgcc
gi|4 : tGAGCAGTCCCT--GGTTTTGTGGGTTGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGCAAACCAGAGATGATC---TGTGAGGAATATCCATTG-TTGTTGATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-G-------TTAAAAAGT-AAAATTTGCA-TTTTGTGCAAAATTAAACTTCATTA-TTGAAACAAAATGAAATTATATTTTTAGTAGTAGATCCTCAGCCCATAATA--G-CG-G-T-GTCAGAACAAGAATTGCCAGGTAAAAT----AGCCCctgctc
gi|5 : GGGCTGTCCCTTAGATTTTGTG----------T-G---TTCCAAA----------------GTAAAAGGGGTTTAAAAG-GGCAAACCAGAGATAATC---TGTGGTGAATTTTCATTG-TTTTTTTAGCAAAATAGACAGCATAATT-TGT--TTATGAGACCCAACAGTGTA---GTCT-A-------ATGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTCAGACA------------GTT------G----ATCATCAGCCCATAGTATTT-C--G-TGGTCAGAACAAGAATAGCCTTGCGAAAT----
gi|6 : GGGCTGTCCTT--AATTTTGTGAGTAGAAGGTT-GAATTTTCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCAGAAACAATC---TGTGGTGAATTTT-ATTG-TTT----TAAAAAATAGACTGTATTATTGTGT--T--TGAGGCCCAACAATGTA---GTCT-A-------TTAAAAAGTAAAAATTTGCA-GTTTGTGCCACATTTAACTTCATAA-TTAAAACAA---------ATGTTTTTAACAGTATATCCTCAGCTCGTAGTA--G-CATG-TTGTCAGAACAAGAATTGACAAGCGAAAT----ccctggcccccccagcccttggggacagccct
gi|7 : TGTGGGTAGAATGTT-GAATTTCCAA-----------------GTAAAAGGGATTTGAGGG-GGCAAACCGGAGACCATCATTTAGGGGGAATTTTCATTG-TTTTTAATG-AAAATATACTGCATTATT-TGT--T--CGAGACCCAACAATATT---GTCT-A-------TTGAAAAGTATAAATTTGCA-TTTTGTACCAAATTCAACTTCACTA-TTTAAACAAAA---------------AA------------AG----TAGT-----TG-G-TGGTCAAAACAAGGATTTCCGCATGAAAT----
gi|8 : tcgAAGCCGGAGATGATC---TGTGGTGAATTTTCATTC-TTTTAACTTAAAAAAAGAC-ATATTA-----T--TTATGACAGCCAACAATGTA---GTGT-ACCTGGTGTTCAAAAGTAAAAGTtcccaccccggcccttagggacagccctgg
gi|9 : agctgtcatggccccatagcctatcagagtatgatggggtttgaagatcaaatgctgtcatcaatgggttttggggaggggtgggtggcagtttgaagccctcttaGCTGTCCCT--CATTTTGTGAGTTGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGTGAACCAGAGACGATC---TGTGGTGAATTTACATTG-TTTTTAATGTAAAACAGATGGCATTATT-TGT--TTATGAGACCGAATAATGTA---GTCT-A-------TTGAAAAGTAACAAATTGCA-TTTTGTGCCAAATTAAACCTCATTA-TTAATACAAAA------Taaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTGTATCAATATTTTATTAATGTATTTGATAGCAAATGGTAAGAAATCGATGATCTGTTATTGACCCAGTG
Alignments
lowQualScore : 2222222222222222 1111111 1111111111 1111111
lowQualScore : 44 3 0000000000000000 3 555 2 3 2 33 555 3 0000000 0 0 44 3 2222222222 1 999999 333 8888888 4 0 11 9999
lowQualScore : .. . ................ . ... . . . .. ... . ....... . . .. . .......... . ...... ... ....... . . .. ....
lowQualScore : 66 1 4444444444444444 3 000 9 4 9 99 444 1 0000000 5 5 66 1 6666666666 9 333333 999 4444444 4 1 00 4444
consensus : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACGGTATATCCTCAGCCCATAGTA--G-CG-G-TGGTCAGAACAAGAATTGCCGGGTGAAAT----AGCCC
Reference ( family-6713 ) : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACGGTATATCCTCAGCCCATAGTA--G-CG-G-TGGTCAGAACAAGAATTGCCGGGTGAAAT----AGCCC
gi|1 : GTCCCT--AATTTTGTGAGTAGAAGGGT-GAATTTCCAAA----------------GTAAAATGGATCTGAAGG-GGCAAACCGGAGACTATC---TGTGATGAATTTTCTTTG-TTTTTAACGAAAAATAGACTACATTATT-TGT--TTACGAGACCGAACAATGTG---GTCT-A-------TTAAAAAGTAAAAATTCGCATTTTTTTGCCAAATTTAACTTCATTATTTAAAACAAAA------TATCTGTTTAACGGTATATCCTCAGTCCATAGAA--GCCT-G-TAGTCAGAACAAGAATAATTTGGTGAAATCCCCAGCCC
gi|10 : tcaGGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGCCTGAAGG-GGAAAACCAGAGACGACC---TGTTGTGAAATTTTATTG-TTTTTAACG-AAAATAGATTGCATTCTT-TGC--ATATGAG-----ACAAT-------------------TTG---------------CG-TTGTGTACCAAATTAAACTTCATTA-TTAAAACAAAT------TATGTTTTAAATGGTTTATCCTccggtcagccatggagcggctctgc
gi|11 : GGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAACTTCCAAG----------------GTAAAAGGG-TTTGAAGG-AGCATTCCTGAGATGGTC---TGTGGATAAGTTTTATTG-TTTTTAATGAATAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTACTAGTTTTA-------TTGAAAATTAA----TTG-A---------CAAATTAAGCTTCATTA-TTAAAACAAt
gi|12 : GTTGTCCCT--AGTTTTGTGAGTAGAAAGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GCCAAACTGGAGATAGTC---TGTGTTGAATTTTCATTG-TTTGTAATGAATAATAGACTGCAGTATT-TGT--TTATGATACCCAACAATATA---TTCT-A-------TTGAAAAGTAAAAA--------TTTGTGCCAAATTAAA----ATTA-Tta
gi|13 : AAGCCAGAGACGTTC---TGTGGTGGGTTTTTCTTG-TTTTTACAGTAAAACTAACTGCATT-TT-TAT--TGATGACAACCATTAATA-A---GTGG-A-------CTCAAAATCAATAAT
gi|14 : gctgtcaaggtgccatggtgtgtcggagtgaggtgaggtttgaaggtgcagatgctcccacctcccctcctcagCTGTCCCT--AACTTTGTGAGTAGAAGGTTGGAATTTCCAAA----------------GT-AAAGGAGTTTAAAGG-GGCGAACTGGAGATGATC---TGTGATGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGTGACCgataata
gi|15 : TTGTGCCAAATTAA--TTCATTA-TTAAAACAAAA------T-----TTTAATAGTAT-------------------G-CG-G-TGGTCAGAACAAGAATTGCCGTGTGAAAT----aa
gi|16 : aTTAACCTATAGTA--G-TAAG-TGGTCAGAACACAAATTGCTGGGTGAAAT----ccatggtcctcagtccttaaggacagttctag
gi|18 : agagGGGCTGCCCCT--TATTTTGGGAGTAGAAAGTT-GAATTTTCAAA----------------cccttacccttggggacagccct
gi|19 : aTGCA-TTT-GTGTTGAATTGAACTTCACTA-TTAAAACAAAA------TAT
gi|2 : GCTGTCATT--AATTTTGC-AGGAGAAGGTT-GAATTT-----------------------AAAAGGGGTTTGAAGA-GGCAAACCAGAGATGATC---CGTGACGATTTTTCATTGGTTTTTAATTACAAATAGATTGCATTGTT-TGT--TTTCGAGACCCAACAATGTA---GTCT-A-------CTGAAAAGTAAAAATTTGCA-ATTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAATTTAATATCCTCGGTGGATAGTA--G-CA-GTTGGTCAGATCAAGAATTGCCGGGTGAAAT----
gi|3 : TGTCCCT--AATTTTGTGAGTATAAGGTT-GAATTTCCAAAAAAAAGGGTTTGAAGGGTAAAAAGGGTTTGAAGGAGACAAACTGGAGACAATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATATACTGCATTATT-TATTATTATGAGACCCAACAGCGTA---GTCT-A-------TTGAAAGGTAAAAATTTGCA-TTTTGTGCCAA-------------A-TTAAAACAAAA------TACATTTTGAGCAGTAGACCCACAGCTCATATTA--GCCA-G-TGGTCAGAACAAAAATTGCCAGGTGAAAT----ccacggcccggcccttctggacagtcctgcc
gi|4 : tGAGCAGTCCCT--GGTTTTGTGGGTTGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGCAAACCAGAGATGATC---TGTGAGGAATATCCATTG-TTGTTGATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-G-------TTAAAAAGT-AAAATTTGCA-TTTTGTGCAAAATTAAACTTCATTA-TTGAAACAAAATGAAATTATATTTTTAGTAGTAGATCCTCAGCCCATAATA--G-CG-G-T-GTCAGAACAAGAATTGCCAGGTAAAAT----AGCCCctgctc
gi|5 : GGGCTGTCCCTTAGATTTTGTG----------T-G---TTCCAAA----------------GTAAAAGGGGTTTAAAAG-GGCAAACCAGAGATAATC---TGTGGTGAATTTTCATTG-TTTTTTTAGCAAAATAGACAGCATAATT-TGT--TTATGAGACCCAACAGTGTA---GTCT-A-------ATGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTCAGACA------------GTT------G----ATCATCAGCCCATAGTATTT-C--G-TGGTCAGAACAAGAATAGCCTTGCGAAAT----
gi|6 : GGGCTGTCCTT--AATTTTGTGAGTAGAAGGTT-GAATTTTCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCAGAAACAATC---TGTGGTGAATTTT-ATTG-TTT----TAAAAAATAGACTGTATTATTGTGT--T--TGAGGCCCAACAATGTA---GTCT-A-------TTAAAAAGTAAAAATTTGCA-GTTTGTGCCACATTTAACTTCATAA-TTAAAACAA---------ATGTTTTTAACAGTATATCCTCAGCTCGTAGTA--G-CATG-TTGTCAGAACAAGAATTGACAAGCGAAAT----ccctggcccccccagcccttggggacagccct
gi|7 : TGTGGGTAGAATGTT-GAATTTCCAA-----------------GTAAAAGGGATTTGAGGG-GGCAAACCGGAGACCATCATTTAGGGGGAATTTTCATTG-TTTTTAATG-AAAATATACTGCATTATT-TGT--T--CGAGACCCAACAATATT---GTCT-A-------TTGAAAAGTATAAATTTGCA-TTTTGTACCAAATTCAACTTCACTA-TTTAAACAAAA---------------AA------------AG----TAGT-----TG-G-TGGTCAAAACAAGGATTTCCGCATGAAAT----
gi|8 : tcgAAGCCGGAGATGATC---TGTGGTGAATTTTCATTC-TTTTAACTTAAAAAAAGAC-ATATTA-----T--TTATGACAGCCAACAATGTA---GTGT-ACCTGGTGTTCAAAAGTAAAAGTtcccaccccggcccttagggacagccctgg
gi|9 : agctgtcatggccccatagcctatcagagtatgatggggtttgaagatcaaatgctgtcatcaatgggttttggggaggggtgggtggcagtttgaagccctcttaGCTGTCCCT--CATTTTGTGAGTTGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGTGAACCAGAGACGATC---TGTGGTGAATTTACATTG-TTTTTAATGTAAAACAGATGGCATTATT-TGT--TTATGAGACCGAATAATGTA---GTCT-A-------TTGAAAAGTAACAAATTGCA-TTTTGTGCCAAATTAAACCTCATTA-TTAATACAAAA------Taaa
blockSeqs : TA G AAAAAGGGTTTGAAGG A ATT G A G TA CTA T CCTGGTG T . TGAAATTATA A TGGTTT CCT GTAA T GT .
blockSeqs : . . . . . . A . . . . . T . TATG T TAGTAT TGG GCCA . GG .
blockSeqs : . . . . . . T . . . . . A . TATG T TTTAAT CTC TTTC . GG .
blockSeqs : . . . . . . A . . . . . T . TACA G CAGTAG CCC GCAT . AG .
blockSeqs : . . . . . . A . . . . . T . ATG T TAGTAG CCC GCG . AG .
blockSeqs : . . . . . . A . . . . . T . T T CAGTAT CTC GCA . TT .
blockSeqs : . . . . . . A . . . . . G . G . G . GCG . AA .
blockSeqs : . . . . . . C . . . . . T . . . . . TG . GC .
blockSeqs : . . . . . . A . . . . . T .
blockSeqs : . . . . . . A . . . . . . .
blockSeqs : . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : T* ****
originalCons : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACGGTATATCCTCAGCCCATAGTA--G-CG-G-TGGTCAGAACAAGAATTGCCGGGTGAAAT----AGCCC
finalCons : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCAT-TTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACGGTATATCCTCAGCCCATAGTA--G-CG-G-TGGTCAGAACAAGAATTGCCGGGTGAAAT----AGCCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTGTATCAATATTTTATTAATGTATTTGATAGCAAATGGTAAGAAATCGATGATCTGTTATTGACCCAGTG
Alignments
lowQualScore : 2222222222222222 1111111 1111111111 1111111
lowQualScore : 44 3 0000000000000000 3 555 2 3 2 33 555 3 0000000 0 0 44 3 2222222222 1 999999 333 8888888 4 0 11 9999
lowQualScore : .. . ................ . ... . . . .. ... . ....... . . .. . .......... . ...... ... ....... . . .. ....
lowQualScore : 66 1 4444444444444444 3 000 9 4 9 99 444 1 0000000 5 5 66 1 6666666666 9 333333 999 4444444 4 1 00 4444
consensus : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACGGTATATCCTCAGCCCATAGTA--G-CG-G-TGGTCAGAACAAGAATTGCCGGGTGAAAT----AGCCC
Reference ( family-6713 ) : GGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCGGAGACGATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-A-------TTGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAACGGTATATCCTCAGCCCATAGTA--G-CG-G-TGGTCAGAACAAGAATTGCCGGGTGAAAT----AGCCC
gi|1 : GTCCCT--AATTTTGTGAGTAGAAGGGT-GAATTTCCAAA----------------GTAAAATGGATCTGAAGG-GGCAAACCGGAGACTATC---TGTGATGAATTTTCTTTG-TTTTTAACGAAAAATAGACTACATTATT-TGT--TTACGAGACCGAACAATGTG---GTCT-A-------TTAAAAAGTAAAAATTCGCATTTTTTTGCCAAATTTAACTTCATTATTTAAAACAAAA------TATCTGTTTAACGGTATATCCTCAGTCCATAGAA--GCCT-G-TAGTCAGAACAAGAATAATTTGGTGAAATCCCCAGCCC
gi|10 : tcaGGGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGCCTGAAGG-GGAAAACCAGAGACGACC---TGTTGTGAAATTTTATTG-TTTTTAACG-AAAATAGATTGCATTCTT-TGC--ATATGAG-----ACAAT-------------------TTG---------------CG-TTGTGTACCAAATTAAACTTCATTA-TTAAAACAAAT------TATGTTTTAAATGGTTTATCCTccggtcagccatggagcggctctgc
gi|11 : GGCTGTCCCT--AATTTTGTGAGTAGAAGGTT-GAACTTCCAAG----------------GTAAAAGGG-TTTGAAGG-AGCATTCCTGAGATGGTC---TGTGGATAAGTTTTATTG-TTTTTAATGAATAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTACTAGTTTTA-------TTGAAAATTAA----TTG-A---------CAAATTAAGCTTCATTA-TTAAAACAAt
gi|12 : GTTGTCCCT--AGTTTTGTGAGTAGAAAGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAGG-GCCAAACTGGAGATAGTC---TGTGTTGAATTTTCATTG-TTTGTAATGAATAATAGACTGCAGTATT-TGT--TTATGATACCCAACAATATA---TTCT-A-------TTGAAAAGTAAAAA--------TTTGTGCCAAATTAAA----ATTA-Tta
gi|13 : AAGCCAGAGACGTTC---TGTGGTGGGTTTTTCTTG-TTTTTACAGTAAAACTAACTGCATT-TT-TAT--TGATGACAACCATTAATA-A---GTGG-A-------CTCAAAATCAATAAT
gi|14 : gctgtcaaggtgccatggtgtgtcggagtgaggtgaggtttgaaggtgcagatgctcccacctcccctcctcagCTGTCCCT--AACTTTGTGAGTAGAAGGTTGGAATTTCCAAA----------------GT-AAAGGAGTTTAAAGG-GGCGAACTGGAGATGATC---TGTGATGAATTTTCATTG-TTTTTAATGAAAAATAGACTGCATTATT-TGT--TTATGTGACCgataata
gi|15 : TTGTGCCAAATTAA--TTCATTA-TTAAAACAAAA------T-----TTTAATAGTAT-------------------G-CG-G-TGGTCAGAACAAGAATTGCCGTGTGAAAT----aa
gi|16 : aTTAACCTATAGTA--G-TAAG-TGGTCAGAACACAAATTGCTGGGTGAAAT----ccatggtcctcagtccttaaggacagttctag
gi|18 : agagGGGCTGCCCCT--TATTTTGGGAGTAGAAAGTT-GAATTTTCAAA----------------cccttacccttggggacagccct
gi|19 : aTGCA-TTT-GTGTTGAATTGAACTTCACTA-TTAAAACAAAA------TAT
gi|2 : GCTGTCATT--AATTTTGC-AGGAGAAGGTT-GAATTT-----------------------AAAAGGGGTTTGAAGA-GGCAAACCAGAGATGATC---CGTGACGATTTTTCATTGGTTTTTAATTACAAATAGATTGCATTGTT-TGT--TTTCGAGACCCAACAATGTA---GTCT-A-------CTGAAAAGTAAAAATTTGCA-ATTTGTGCCAAATTAAACTTCATTA-TTAAAACAAAA------TATGTTTTTAATTTAATATCCTCGGTGGATAGTA--G-CA-GTTGGTCAGATCAAGAATTGCCGGGTGAAAT----
gi|3 : TGTCCCT--AATTTTGTGAGTATAAGGTT-GAATTTCCAAAAAAAAGGGTTTGAAGGGTAAAAAGGGTTTGAAGGAGACAAACTGGAGACAATC---TGTGGTGAATTTTCATTG-TTTTTAATGAAAAATATACTGCATTATT-TATTATTATGAGACCCAACAGCGTA---GTCT-A-------TTGAAAGGTAAAAATTTGCA-TTTTGTGCCAA-------------A-TTAAAACAAAA------TACATTTTGAGCAGTAGACCCACAGCTCATATTA--GCCA-G-TGGTCAGAACAAAAATTGCCAGGTGAAAT----ccacggcccggcccttctggacagtcctgcc
gi|4 : tGAGCAGTCCCT--GGTTTTGTGGGTTGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGCAAACCAGAGATGATC---TGTGAGGAATATCCATTG-TTGTTGATGAAAAATAGACTGCATTATT-TGT--TTATGAGACCCAACAATGTA---GTCT-G-------TTAAAAAGT-AAAATTTGCA-TTTTGTGCAAAATTAAACTTCATTA-TTGAAACAAAATGAAATTATATTTTTAGTAGTAGATCCTCAGCCCATAATA--G-CG-G-T-GTCAGAACAAGAATTGCCAGGTAAAAT----AGCCCctgctc
gi|5 : GGGCTGTCCCTTAGATTTTGTG----------T-G---TTCCAAA----------------GTAAAAGGGGTTTAAAAG-GGCAAACCAGAGATAATC---TGTGGTGAATTTTCATTG-TTTTTTTAGCAAAATAGACAGCATAATT-TGT--TTATGAGACCCAACAGTGTA---GTCT-A-------ATGAAAAGTAAAAATTTGCA-TTTTGTGCCAAATTAAACTTCATTA-TTCAGACA------------GTT------G----ATCATCAGCCCATAGTATTT-C--G-TGGTCAGAACAAGAATAGCCTTGCGAAAT----
gi|6 : GGGCTGTCCTT--AATTTTGTGAGTAGAAGGTT-GAATTTTCAAA----------------GTAAAAGGGGTTTGAAGG-GGCAAACCAGAAACAATC---TGTGGTGAATTTT-ATTG-TTT----TAAAAAATAGACTGTATTATTGTGT--T--TGAGGCCCAACAATGTA---GTCT-A-------TTAAAAAGTAAAAATTTGCA-GTTTGTGCCACATTTAACTTCATAA-TTAAAACAA---------ATGTTTTTAACAGTATATCCTCAGCTCGTAGTA--G-CATG-TTGTCAGAACAAGAATTGACAAGCGAAAT----ccctggcccccccagcccttggggacagccct
gi|7 : TGTGGGTAGAATGTT-GAATTTCCAA-----------------GTAAAAGGGATTTGAGGG-GGCAAACCGGAGACCATCATTTAGGGGGAATTTTCATTG-TTTTTAATG-AAAATATACTGCATTATT-TGT--T--CGAGACCCAACAATATT---GTCT-A-------TTGAAAAGTATAAATTTGCA-TTTTGTACCAAATTCAACTTCACTA-TTTAAACAAAA---------------AA------------AG----TAGT-----TG-G-TGGTCAAAACAAGGATTTCCGCATGAAAT----
gi|8 : tcgAAGCCGGAGATGATC---TGTGGTGAATTTTCATTC-TTTTAACTTAAAAAAAGAC-ATATTA-----T--TTATGACAGCCAACAATGTA---GTGT-ACCTGGTGTTCAAAAGTAAAAGTtcccaccccggcccttagggacagccctgg
gi|9 : agctgtcatggccccatagcctatcagagtatgatggggtttgaagatcaaatgctgtcatcaatgggttttggggaggggtgggtggcagtttgaagccctcttaGCTGTCCCT--CATTTTGTGAGTTGAAGGTT-GAATTTCCAAA----------------GTAAAAGGGGTTTGAAAG-GGTGAACCAGAGACGATC---TGTGGTGAATTTACATTG-TTTTTAATGTAAAACAGATGGCATTATT-TGT--TTATGAGACCGAATAATGTA---GTCT-A-------TTGAAAAGTAACAAATTGCA-TTTTGTGCCAAATTAAACCTCATTA-TTAATACAAAA------Taaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATTTGTATCAATATTTTATTAATGTATTTGATAGCAAATGGTAAGAAATCGATGATCTGTTATTGACCCAGTG