lowQualScore : 11111111 1111111 1111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333 1 1 1 1 8888 1 22222 11 1 33333 3333333 1 1 1 1 55 1 55555 1 1 1 222 4 777 1 1 1 4 2222222222 1 22 777 1 1 1 1111111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 11 1 2 2 888888888888 4
lowQualScore : 66666666 7 5 5 7 5555 6 5 6 6 44444 22 7 6 55555 6 0000000 6 6 5 7 6 5 6 5 6 55 6 7 6 66666 6 6 7 7 6 5 222 6 0 000 6 6 6 6 7 5 7 0 8888888888 7 6 11 6 000 6 7 6 5 7 0 3 6666666 3 0 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 99 3 6 5 4 55 0 4 888 7 333333333333 0 6 6
lowQualScore : ........ . . . . .... . . . . ..... .. . . ..... . ....... . . . . . . . . . .. . . . ..... . . . . . . ... . . ... . . . . . . . . .......... . . .. . ... . . . . . . . ....... . . . .............................................................................................................................................. . .. . . . . .. . . ... . ............ . . .
lowQualScore : 00000000 0 0 0 0 0000 0 0 0 0 00000 00 0 0 00000 0 0000000 0 0 0 0 0 0 0 0 0 00 0 0 0 00000 0 0 0 0 0 0 000 0 0 000 0 0 0 0 0 0 0 0 0000000000 0 0 00 0 000 0 0 0 0 2 0 0 8888888 2 8 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 55 0 0 0 0 55 0 0 555 5 000000000000 0 0 0
consensus : GATATTTAGTCAAACCA-------GTCAGTACTTCAAACTCTGTTAAAGGGGAAACAGTTTAGTGTT----CAAGCCCTTTGTACAATGTAAACATCTCTTTACTTTGTTCATATTATCTATAGGTCTTTGCATACAACATTCATTTTGTATAATATTATTAATTTAGTGTATTTTAAAATGTTAAAGGTTTTATGGGAGAACTACGATAGAGAGATAATGCAGATTTGAATTTGTTTCAGTTCAATACATTTTATATTATATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATTTCTATCATA-AATATACATTCTAGGATCTCCTATGTATGTGATATACTGCACTTCATAACATTCACTCATTATTTGAATTTGTT---TACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTAGTACGTCTTTTTGTTCTATGTTTCAAAGGTA-TTCTTCAGAATCTATTAGATATTAATGATTTGAACCCGTGTTGTTATTATATCTGATTCCTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGGACGTGAGGGGTGTTGNATA-TTNCATTACCTC-CCATGAACAAACTCAAAT--AAAC--CGA----G-CTN-TTATTTTT--NTTTT-----TATC---GC-TGTTTTC-----GTNCTT--CTA------------TNNGA------TTCTTATAT-----CA-ATATTAGTTGTTGTCAACGNTACATGTACATCAGGACGTTCGGACTTNTTCAACGGCCCTTGTTTGAANGNNTGTTNAAGGGGNATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCTATCT
Reference ( gi|2 ) : GATATTTAGTCAAACCGTTTTTGCGTCTGTACTTCAAACTCTCTTCAAGGGGAAACAGTTAAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTGTATTTTGCTCATATGGTTCATAGGTCTTCACATACAACATTCAATTTGTACAATATTATTAAATGGATGTATTTCAAAA-------GGTTTCATAGGAGAACTACTATTGAGAGATAATGTAGATTTTAATTTATTTCCGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATA--TTTTAATATCTATCGTATATTTTGCATTTTTGGAACTCCTATATATGTGAGATACTGCACTTCATATCCTTTACTCATTATTTG-ATTTGTTTACTACCTACCTGAGTGCAAATTCAATAACTTTATTCTACTTGTACGTCTTTTTGGTCTATGATTCAAAGGTACTTCTTC-GA---TA--AGATATTATTGATTTAACTCCGTGTTATTATT---TCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGTTGGGGTCATAAGGTGTGTTGTATA-TTTCATAACTTT-TCATGAACAGA-TCAGATTGAAACATCGA----G-CTATTTATTTTC--CTTTT-----TATT---GT-TGTTTTTCA---GTGCTT--CTA------------TTTGA------TTCTTATAT-----CAGATATTAAT----AT--ATGA-ACATGTACATAAGGATGTACAAACTTATTCAACGGCCCTCGTTTCAAAGCATA-TAAAAGAAAATTGACTCGAGCAAGGT-----ATGA---CAATCA-AGCCATTTCTCT
gi|1 : GATATTTAGTCAAACCA-------GTCAGTACTTCAAACTCTGTTAAAGGGGAAACAGTTTAGTGTT----CAAGCCCTTTGTACAATGTAAACATCTCTTTACTTTGTTCATATTATCTATAGGTCTTTGCATACAACATTCATTTTGTATAATATTATTAATTTAGTGTATTTTAAAATGTTAAAGGTTTTATGGGAGAACTACGATAGAGAGATAATGCAGATTTGAATTTGTTTCAGTTCAATACATTTTATATTATATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATTTCTATCATA-AATATACATTCTAGGATCTCCTATGTATGTGATATACTGCACTTCATAACATTCACTCATTATTTGAATTTGTT---TACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTAGTACGTCTTTTTGTTCTATGTTTCAAAGGTA-TTCTTCAGAATCTATTAGATATTAATGATTTGAACCCGTGTTGTTATTATATCTGATTCCTCAG
gi|7 : TAGGGACGTGAGAGGTGTTGGGTA-TTTCATCATTTCATCATGAACAAACTCAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgttttaagtaaattctaatatcatatattaatatacgtacatgtacatcaggatgttcaaacttattcaacggcccttgtttgaatgcatattaaagggaaattactcgagcaaggtagtgcatgaacccaatcagagctatctattt
gi|4 : gattgctctgaatcatgaaactcattaaatattattggtatttcagctaattcAAGGGGTGTTGAATA-TTTCATTATCTC-CCATGAACAAA-TTCAATT-AAAC--CGACTCTG-CTA-TTATTTTT--TTTTTGGTTGTATT---ATATGCTTTCCAGGGGTACTT--TTA------------Tttacagctg
gi|3 : ttgattgagtccttggaatcgtggggcttatttaccgttgcacaaaattgtattaccgcttaagttggggctaggtgggcgtgAGGGGTGTTGTATAATTGTATA-CTCT-TCA---ACAGA-GTA-AT--AAA-ATCGA----A-CTCGATGTTGTT--GTTTT-----TATTTTGGC-TGTCTTTGT---GTTCTTTGCTACCAAGCGATCATTTTAACATACATTATTATACGTATACAGGTACTAGTTGTTGTCAATGGTATATGTATATCAGGACGTTAGGACTTCTTCAATGGCCCTTATTTGAAAGACTG-TTAAAGGGTATTTACTCGAGCAAGGT-----ATat
gi|9 : gGTGTTGCATA-TTGTATTACCTC-CCATGGACACACTCAAA--AAAAC---GA----GTCTGCT-ATTTTCTACTTTT-----GGAC---GC--GTTTT------GTGCTT--CCA------------TGGGA------TACTTTTAT-----CA-ATAT
gi|1 : gagcaA------TTCTAATAT-----CATATATTAAT----AT--ACGT-ACATGTACATCAGGATGTTCAAACTTATTCAACGGCCCTTGTTTGAATGCATATTAAAGGGAAATT-ACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCTATC
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): GGTGTGTGATATGGGTGTTAAGTTTTACATTATCTACATGTACAGGTGCAATATAACAAGTCTTCTATTTTCATTTATTGGTTGCGCTTTATGCTTCCAAAGGATCTATTTATCAGATTTTGTTGGTATA
Unaligned ( gi|6 ): GGAATTATACGACCCATTTAACGCTTAAATATGCAATACGGCTTAAGTCGGTGCTAAGGGATAGGGGGTTCCGCATATTTCATTTGACTTATGAACATATTCAAACGAACCGAGGCTGATA
Unaligned ( gi|8 ): TTACAACATTGTCCGAATATTGATATTCCGCTGCTATTGTGGGAGAGAGGTACTGCATATTTCAATTCCTCTCATAAACAGATTCAAGAAAGCCGAGCCCTCTAATTTATT
Unaligned ( gi|10 ): TAGGCATAAAGGATGTTGAATTTCTCATTGTCCATTATGCACAGATTCATTTAGAACGAGTCTGCTGTTTTCATATTTTTTT
Unaligned ( gi|11 ): AACCTAGTTTGCTATTTGCTTATGTTGGTCACGTTCTTTGCTTCCCAGGGATCCTTTTATCGAATAGAATTCACTTC
Unaligned ( gi|12 ): GGAGACGTGATGGGTGTTGTATATCCCACTTCCCCTTATGAATATATTCAAGACAACCGAGTCTTTTAGCTT
Unaligned ( gi|13 ): AATAAAACTAGGCTGCTGTTTTCTGTCCTTGGTTACGTTTCGCGCTTCCAAAAGATACTTTTAACATATATT
Unaligned ( gi|14 ): ATAAAAATGAGTCTTCTATTTTCATTTCATGAACGCATTCTGTGGAATACTTTTATCAAAAT
Unaligned ( gi|15 ): TCAACAAAATCCAGTCTGCCATTTTCTTTTATTAGACGCGTTCTGTGCTTTCACGGA
Unaligned ( gi|16 ): TTGGTCTCGTTCTTTGCTTCCCGGAGATACTTTTATCAGATAGTATTTAC
Unaligned ( gi|17 ): GAGCGTTGTTGTTAATTATATTAACCCACAT
Alignments
lowQualScore : 6666666 4444 3333333 11 2 1 333 2 1 2222222 222 444444444444444444444444444444444444444444444444 1111 11111 1111 222222 1111 55555555555555555555555555555 111 11 11111 11 333333333 77777777777777777777777777777777 1 11111 222 1
lowQualScore : 5555555 4 2 3 4 2222 3 3 4 4 3 3333333 2 4 2 3 88 4 0 4 4 4 4 3 4 3 5 555 4 3 4 0 5 1111111 4 3 111 888888888888888888888888888888888888888888888888 5 1 5 1 999 5 5555 6 7 44444 3333 111111 4444 8 1 8 55555555555555555555555555555 222 11 99999 11 000000000 22222222222222222222222222222222 0 11 1 1 22 88 1 2 11 7 77777 000 5
lowQualScore : ....... . . . . .... . . . . . ....... . . . . .. . . . . . . . . . . ... . . . . . ....... . . ... ................................................ . . . . ... . .... . . ..... .... ...... .... . . . ............................. ... .. ..... .. ......... ................................ . .. . . .. .. . . .. . ..... ... .
lowQualScore : 0000000 0 5 0 0 5555 0 0 0 0 0 0000000 5 0 5 0 00 0 0 0 0 0 0 0 0 0 5 000 0 0 0 0 5 5555555 0 0 555 000000000000000000000000000000000000000000000000 7 0 0 0 111 0 1111 1 4 33333 0000 666666 3333 0 0 0 22222222222222222222222222222 000 00 55555 00 444444444 66666666666666666666666666666666 7 33 0 0 00 00 0 0 77 3 88888 555 0
consensus : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGTTAGGGACGTGA-GGGGTGTTGNATA-TTNCATT--AC-CTC-CCATGAACANATTCAA-AT--AAA-C--CGA----GTCT-NT-TATTTT-CGTTT-T-----T-AT-T---GC-TGTTTTTCA---GTG--CTT--CTATNG---GAT--TCTTA--------TATCAT----------ATATTAATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
Reference ( family-66 ) : GATATTTAGTCAAACCA-------GTCAGTACTTCAAACTCTGTTAAAGGGGAAACAGTTTAGTGTT----CAAGCCCTTTGTACAATGTAAACATCTCTTTACTTTGTTCATATTATCTATAGGTCTTTGCATACAACATTCATTTTGTATAATATTATTAATTTAGTGTATTTTAAAATGTTAAAGGTTTTATGGGAGAACTACGATAGAGAGATAATGCAGATTTGAATTTGTTTCAGTTCAATACATTTTATATTATATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATTTCTATCATA-AATATACATTCTAGGATCTCCTATGTATGTGATATACTGCACTTCATAACATTCACTCATTATTTGAATTTGTT---TACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTAGTACGTCTTTTTGTTCTATGTTTCAAAGGTA-TTCTTCAGAATCTATTAGATATTAATGATTTGAACCCGTGTTGTTATTATATCTGATTCCTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGGACGTGA-GGGGTGTTGNATA-TTNCATT--AC-CTC-CCATGAACAAACTCAA-AT--AAA-C--CGA----G-CT-NT-TATTTT-TNTTT-T-----T-AT-C---GC-TGTTTTC-----GTN--CTT--CTATNN---GAT--TCTTA--------TATCA-----------ATATTAGTTGTTGTCAACGNTACATGTACATCAGGACGTTCGGACTTNTTCAACGGCCCTTGTTTGAANGNNTGTTNAAGGGGNATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCTATCT
gi|1 : GATATTTAGTCAAACCA-------GTCAGTACTTCAAACTCTGTTAAAGGGGAAACAGTTTAGTGTT----CAAGCCCTTTGTACAATGTAAACATCTCTTTACTTTGTTCATATTATCTATAGGTCTTTGCATACAACATTCATTTTGTATAATATTATTAATTTAGTGTATTTTAAAATGTTAAAGGTTTTATGGGAGAACTACGATAGAGAGATAATGCAGATTTGAATTTGTTTCAGTTCAATACATTTTATATTATATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATTTCTATCATA-AATATACATTCTAGGATCTCCTATGTATGTGATATACTGCACTTCATAACATTCACTCATTATTTGAATTTGTT---TACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTAGTACGTCTTTTTGTTCTATGTTTCAAAGGTA-TTCTTCAGAATCTATTAGATATTAATGATTTGAACCCGTGTTGTTATTATATCTGATTCCTCAG
gi|1 : AT--TCTAA--------TATCAT----------ATATTAAT----AT--ACG-TACATGTACATCAGGATGTTCAAACTTATTCAACGGCCCTTGTTTGAATGCATATTAAAGGGAAA-TTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCTATCTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgttttaagtaaattctaatatcatatattaatatacgtacatgtacatcaggatgttcaaacttattcaacggcccttgtttgaatgcatattaaagggaaattactcgagcaaggtagtgcatgaacccaatcagagctatctattt
gi|12 : gatatttagtcaaaccagtcagtacttcaaactctgttaaaggggaaacagtttagtgttcaagccctttgtacaatgtaaacatctctttactttgttcatattatctataggtctttgcatacaacattcattttgtataatattattaatttagtgtattttaaaatgttaaaggttttatgggagaactacgatagagagataatgcagatttgaatttgtttcagttcaatacattttatattatattttcttaagttgctagtctatagttttcaatttctatcataaatatacattctaggatctcctatgtatgtgatatactgcacttcataacattcactcattatttgaatttgtttacctgcctgagtgcaagttcaataaccttattctgctagtacgtctttttgttctatgtttcaaaggtattcttcagaatctattagatattaatgatttgaacccgtgttgttattatatctgattcctcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgttttaagtaaGAGACGTGA-TGGGTGTTGTATA-TCCCACT--TC-CCC-TTATGAATATATTCAA-GA--CAA-C--CGA----GTCT-TT-TAattt
gi|2 : gGATATTTAGTCAAACCGTTTTTGCGTCTGTACTTCAAACTCTCTTCAAGGGGAAACAGTTAAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTGTATTTTGCTCATATGGTTCATAGGTCTTCACATACAACATTCAATTTGTACAATATTATTAAATGGATGTATTTCAAAA-------GGTTTCATAGGAGAACTACTATTGAGAGATAATGTAGATTTTAATTTATTTCCGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATA--TTTTAATATCTATCGTATATTTTGCATTTTTGGAACTCCTATATATGTGAGATACTGCACTTCATATCCTTTACTCATTATTTG-ATTTGTTTACTACCTACCTGAGTGCAAATTCAATAACTTTATTCTACTTGTACGTCTTTTTGGTCTATGATTCAAAGGTACTTCTTC-GA---TA--AGATATTATTGATTTAACTCCGTGTTATTATT---TCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGTTGGGGTCATAA-GGTGTGTTGTATA-TTTCATA--AC-TTT-TCATGAACAGA-TCAG-ATTGAAA-CATCGA----G-CTATT-TATTTT-CCTTT-T-----T-AT-T---GT-TGTTTTTCA---GTG--CTT--CTATTT---GAT--TCTTA--------TATCAG----------ATATTAA-TAT-----ATGA-ACATGTACATAAGGATGTACAAACTTATTCAACGGCCCTCGTTTCAAAGCATA-TAAAAGAAAATTGACTCGAGCAAGGT-----ATGA---CAATCA-AGCCATTTgctt
gi|3 : GA-GGGGTGTTGTATAATTGTAT---ACTCTT-C----AACAGAGT--A-AT--AAAAT--CGA----A-CT-CGATGTTGT-TGTTT-T-----T-AT-TTTGGC-TGTCTTT-----GTGTTCTTTGCTACCAAGCGATCATTTTAACATACATTATTATACGTATACAGGTACTAGTTGTTGTCAATGGTATATGTATATCAGGACGTTAGGACTTCTTCAATGGCCCTTATTTGAAAGACTGTTAAA-GGGTATTTACTCGAGCAAGGTActct
gi|4 : GGGCGTGAAGGGGTGTTGAATA-TTTCATT--AT-CTC-CCATGAACAAATTCAA-TT--AAA-C--CGACTCTG-CT-AT-TATTTT-TTTTT-TGGTTGT-AT-T---ATATGCTTTCCAGGGGTA--CTT--TTATt
gi|5 : ttgattgagtccttggaatcgtggggcttatttaccgttgcacaaaattgtattaccgcttaagttggggctaggtGGGTGTTAAGTT-TTACATT--AT-CT--ACATGTACAGGTGCAATAT--AA-----CAA----GTCT-TC-TATTTT-CATTTAT-----TGGT-T---GC--GCTTT------ATG--CTT--CCAAAG---GAT--CTATT--------TATCA-----------G-ATT--TTGTTGat
gi|6 : ggtgtgtgatatAGGGA--TAG-GGGGTTCCGCATA-TTTCATTTGAC-TT----ATGAACATATTCAA-AC--GAA-C--CGA----G-gtata
gi|7 : ggaattatacgacccatttaacgcttaaatatgcaatacggcttaagtcggtgctaTAGGGACGTGA-GAGGTGTTGGGTA-TTTCATC--AT-TTCATCATGAACAAACTCAgctgata
gi|9 : gattgctctgaatcatgaaactcattaaatattattggtatttcagctaattcGA-GCAGTGTTGCATA-TTGTATT--AC-CTC-CCATGGACACACTCAA-A---AAA-A--CGA----GTCT-GC-TATTTTCTACTT-T-----T-GGAC---GC--GTTTT------GTG--CTT--CCATGG---GAT--ACTTT--------TATCA-----------ATATttacagctg
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTACAACATTGTCCGAATATTGATATTCCGCTGCTATTGTGGGAGAGAGGTACTGCATATTTCAATTCCTCTCATAAACAGATTCAAGAAAGCCGAGCCCTCTAATTTATT
Unaligned ( gi|10 ): TAGGCATAAAGGATGTTGAATTTCTCATTGTCCATTATGCACAGATTCATTTAGAACGAGTCTGCTGTTTTCATATTTTTTT
Unaligned ( gi|11 ): AACCTAGTTTGCTATTTGCTTATGTTGGTCACGTTCTTTGCTTCCCAGGGATCCTTTTATCGAATAGAATTCACTTC
Unaligned ( gi|13 ): AATAAAACTAGGCTGCTGTTTTCTGTCCTTGGTTACGTTTCGCGCTTCCAAAAGATACTTTTAACATATATT
Unaligned ( gi|14 ): ATAAAAATGAGTCTTCTATTTTCATTTCATGAACGCATTCTGTGGAATACTTTTATCAAAAT
Unaligned ( gi|15 ): TCAACAAAATCCAGTCTGCCATTTTCTTTTATTAGACGCGTTCTGTGCTTTCACGGA
Unaligned ( gi|16 ): TTGGTCTCGTTCTTTGCTTCCCGGAGATACTTTTATCAGATAGTATTTAC
Unaligned ( gi|17 ): GAGCGTTGTTGTTAATTATATTAACCCACAT
Alignments
lowQualScore : 3333333 2222 3333333 11 1 1 222 1 1 2222222 222 1111 11111 1111 111 22222222222 3333 111111 222222222 333333333333333333333333333333 11111 222 1
lowQualScore : 2222222 1 1 1 1 4444 1 1 1 1 1 3333333 1 1 1 1 88 1 5 1 1 1 1 1 1 1 5 111 1 1 1 5 5 1111111 1 1 111 9999 5 1 4 1 777 4 6666 1 2 00000 3333 44 888 5 5 11111111111 7777 6 99 1 888888 5 888 222222222 7 444444444444444444444444444444 0 0 0 7 7 7 77777 000 5
lowQualScore : ....... . . . . .... . . . . . ....... . . . . .. . . . . . . . . . . ... . . . . . ....... . . ... .... . . . . ... . .... . . ..... .... .. ... . . ........... .... . .. . ...... . ... ......... . .............................. . . . . . . ..... ... .
lowQualScore : 5555555 0 0 0 0 0000 0 0 0 0 0 0000000 0 0 0 0 00 0 5 0 0 0 0 0 0 0 5 000 0 0 0 0 5 5555555 0 0 555 3333 0 0 4 0 111 4 4444 0 4 00000 4444 66 999 7 7 11111111111 5555 7 22 0 333333 7 444 999999999 2 777777777777777777777777777777 7 7 7 3 3 3 88888 555 0
consensus : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGCTAGG--GACGTGA-GGGGTGTTGNATA-TTTCATT--AC-CTC-CCATGAACAGATTCAA-AT--AAA-C--CGAGTCTGCTATTTTC--GT-TT-TT-G-TT---GCTGTTTT---GTGC-TT--CCANNG---G-AT--TCTTN--------TATCATA----------TATTAATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
Reference ( family-66 ) : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGTTAGG--GACGTGA-GGGGTGTTGNATA-TTNCATT--AC-CTC-CCATGAACANATTCAA-AT--AAA-C--CGAGTCTNTTATTTTC--GT-TT-TT-A-TT---GCTGTTTTTCAGTGC-TT--CTATNG---G-AT--TCTTA--------TATCATA----------TATTAATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
gi|1 : GATATTTAGTCAAACCA-------GTCAGTACTTCAAACTCTGTTAAAGGGGAAACAGTTTAGTGTT----CAAGCCCTTTGTACAATGTAAACATCTCTTTACTTTGTTCATATTATCTATAGGTCTTTGCATACAACATTCATTTTGTATAATATTATTAATTTAGTGTATTTTAAAATGTTAAAGGTTTTATGGGAGAACTACGATAGAGAGATAATGCAGATTTGAATTTGTTTCAGTTCAATACATTTTATATTATATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATTTCTATCATA-AATATACATTCTAGGATCTCCTATGTATGTGATATACTGCACTTCATAACATTCACTCATTATTTGAATTTGTT---TACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTAGTACGTCTTTTTGTTCTATGTTTCAAAGGTA-TTCTTCAGAATCTATTAGATATTAATGATTTGAACCCGTGTTGTTATTATATCTGATTCCTCAG
gi|1 : -AT--TCTAA--------TATCATA----------TATTAAT----AT--ACG-TACATGTACATCAGGATGTTCAAACTTATTCAACGGCCCTTGTTTGAATGCATATTAAAGGGAAA-TTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCTATCTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgttttaagtaaattctaatatcatatattaatatacgtacatgtacatcaggatgttcaaacttattcaacggcccttgtttgaatgcatattaaagggaaattactcgagcaaggtagtgcatgaacccaatcagagctatctattt
gi|10 : gatatttagtcaaaccagtcagtacttcaaactctgttaaaggggaaacagtttagtgttcaagccctttgtacaatgtaaacatctctttactttgttcatattatctataggtctttgcatacaacattcattttgtataatattattaatttagtgtattttaaaatgttaaaggttttatgggagaactacgatagagagataatgcagatttgaatttgtttcagttcaatacattttatattatattttcttaagttgctagtctatagttttcaatttctatcataaatatacattctaggatctcctatgtatgtgatatactgcacttcataacattcactcattatttgaatttgtttacctgcctgagtgcaagttcaataaccttattctgctagtacgtctttttgttctatgtttcaaaggtattcttcagaatctattagatattaatgatttgaacccgtgttgttattatatctgattcctcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgttttaagtaaTAGG----CATAA-AGGATGTTGAATT-TCTCATT--GT-CCA-TTATGCACAGATTCAT-TT--AGA-A--CGAGTCTGCTGTTTTC--ATATT-TT-T-TT---attt
gi|12 : GA--GACGTGA-TGGGTGTTGTATA-TCCCACT--TC-CCC-TTATGAATATATTCAA-GA--CAA-C--CGAGTCTTTTA
gi|13 : gA-AT--AAA-A--CTAGGCTGCTGTTTTCT-GT-CC-TT-GGTT---AC-GTTTC---GCGC-TT--CCAAAA---G-AT--ACTTT--------TAACATA----------TATTgctt
gi|2 : GATATTTAGTCAAACCGTTTTTGCGTCTGTACTTCAAACTCTCTTCAAGGGGAAACAGTTAAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTGTATTTTGCTCATATGGTTCATAGGTCTTCACATACAACATTCAATTTGTACAATATTATTAAATGGATGTATTTCA-------AAAGGTTTCATAGGAGAACTACTATTGAGAGATAATGTAGATTTTAATTTATTTCCGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATA--TTTTAATATCTATCGTATATTTTGCATTTTTGGAACTCCTATATATGTGAGATACTGCACTTCATATCCTTTACTCATTATTTG-ATTTGTTTACTACCTACCTGAGTGCAAATTCAATAACTTTATTCTACTTGTACGTCTTTTTGGTCTATGATTCAAAGGTACTTCTTC-GA---TA--AGATATTATTGATTTAACTCCGTGTTATTATT---TCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGTTGGG--GTCATAA-GGTGTGTTGTATA-TTTCATA--AC-TTT-TCATGAACAGA-TCAG-ATTGAAA-CATCGAGCTATTTATTTTC--CT-TT-TT-A-TT---GTTGTTTTTCAGTGC-TT--CTATTT---G-AT--TCTTA--------TATCAGA----------TATTAA----TAT--ATGA-ACATGTACATAAGGATGTACAAACTTATTCAACGGCCCTCGTTTCAAAGCATA-TAAAAGAAAATTGACTCGAGCAAGGT-----ATGA---CAATCA-AGCCATTT
gi|3 : GA-GGGGTGTTGTATAATTGTAT---ACTCTT-C----AACAGAGT--A-AT--AAAAT--CGAACTCGATGTTGTT--GT-TT-TT-A-TTTTGGCTGTCTTTGTGTTC-TTTGCTACCAAGCG-ATCATTTTAACATACATTATTATACGTATACAGGTACTAGTTGTTGTCAATGGTATATGTATATCAGGACGTTAGGACTTCTTCAATGGCCCTTATTTGAAAGACTGTTAAAGGG-TATTTACTCGAGCAAGGTActct
gi|4 : GGGCTAGGTGGGCGTGAAGGGGTGTTGAATA-TTTCATT--AT-CTC-CCATGAACAAATTCAA-TT--AAA-C--CGACTCTGCTATTATT--TT-TT-TT-T-TG---GTTGTATTATA-TGCTTT--CCAGGG---GTAC--TTTTA--------TATt
gi|5 : ttgattgagtccttggaatcgtggggcttatttaccgttgcacaaaattgtattaccgcttaagttgGGGTGTTAAGTT-TTACATT--AT-CTA-C-ATGTACAGGTGCAATAT--AA-----CAAGTCTTCTATTTTC--AT-TTATTGG-TT---GC-GCTTT---ATGC-TT--CCAAAG---G-AT--CTATT--------TATCAGA----------T-T---TTGTTG
gi|6 : ggtgtgtgatatAGG--GA--TAG-GGGGTTCCGCATA-TTTCATTTGAC-TT----ATGAACATATTCAA-AC--GAA-C--CGAGGCTgtata
gi|7 : ggaattatacgacccatttaacgcttaaatatgcaatacggcttaagtcggtgctaTAGG--GACGTGA-GAGGTGTTGGGTA-TTTCATC--AT-TTCATCATGAACAAACTCAgata
gi|9 : gattgctctgaatcatgaaactcattaaatattattggtatttcagctaattcGA-GCAGTGTTGCATA-TTGTATT--AC-CTC-CCATGGACACACTCAA-A---AAA-A--CGAGTCTGCTATTTTCTACT-TT-TG-G-AC---GC-GTTTT---GTGC-TT--CCATGG---G-AT--ACTTT--------TATCA-A----------TATttacagctg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTACAACATTGTCCGAATATTGATATTCCGCTGCTATTGTGGGAGAGAGGTACTGCATATTTCAATTCCTCTCATAAACAGATTCAAGAAAGCCGAGCCCTCTAATTTATT
Unaligned ( gi|11 ): AACCTAGTTTGCTATTTGCTTATGTTGGTCACGTTCTTTGCTTCCCAGGGATCCTTTTATCGAATAGAATTCACTTC
Unaligned ( gi|14 ): ATAAAAATGAGTCTTCTATTTTCATTTCATGAACGCATTCTGTGGAATACTTTTATCAAAAT
Unaligned ( gi|15 ): TCAACAAAATCCAGTCTGCCATTTTCTTTTATTAGACGCGTTCTGTGCTTTCACGGA
Unaligned ( gi|16 ): TTGGTCTCGTTCTTTGCTTCCCGGAGATACTTTTATCAGATAGTATTTAC
Unaligned ( gi|17 ): GAGCGTTGTTGTTAATTATATTAACCCACAT
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 3333333 2222 3333333 11 1 1 222 1 1 2222222 222 111111 1111 11111 111 1111 3333333333 11111 00000000000000000000000000000000000 11111 222 1
lowQualScore : 2222222 1 1 1 1 4444 1 1 1 1 1 3333333 1 1 1 1 88 1 5 1 1 1 1 1 1 1 5 111 1 1 1 5 5 1111111 1 1 111 5 111111 4 1 4 55 4 3333 0 1 33333 8888 1 3 4 888 4 4 3333 4444444444 5 777 66 11111 22 6 1 8 0 55555555555555555555555555555555555 0 0 0 7 7 7 77777 000 5
lowQualScore : ....... . . . . .... . . . . . ....... . . . . .. . . . . . . . . . . ... . . . . . ....... . . ... . ...... . . . .. . .... . . ..... .... . . . ... . . .... .......... . ... .. ..... .. . . . . ................................... . . . . . . ..... ... .
lowQualScore : 5555555 0 0 0 0 0000 0 0 0 0 0 0000000 0 0 0 0 00 0 5 0 0 0 0 0 0 0 5 000 0 0 0 0 5 5555555 0 0 555 7 333333 4 0 0 55 0 4444 7 3 22222 9999 6 6 0 000 4 4 1111 8888888888 0 888 11 11111 00 4 0 6 8 33333333333333333333333333333333333 7 7 7 3 3 3 88888 555 0
consensus : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGCTA-GG--GACGTGA-GGGGTGTTGNATA-TTTCATT--AC-CTC-CCATGAACAGATTCAA-AT--AAA-C--CGAGTCTG-CTATT-TTC--GT-TT-TT--G-TT----GCT---GT-TTT---GTG--CTT-----CCAAGGGATNCTTTTATCANATATTA--------------------ATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
Reference ( family-66 ) : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGCTA-GG--GACGTGA-GGGGTGTTGNATA-TTTCATT--AC-CTC-CCATGAACAGATTCAA-AT--AAA-C--CGAGTCTG-CTATT-TTC--GT-TT-TT--G-TT----GCT---GT-TTT---GTG--CTT-----CCANNGGATTCTTNTATCATATATTA--------------------ATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
gi|1 : GATATTTAGTCAAACCA-------GTCAGTACTTCAAACTCTGTTAAAGGGGAAACAGTTTAGTGTT----CAAGCCCTTTGTACAATGTAAACATCTCTTTACTTTGTTCATATTATCTATAGGTCTTTGCATACAACATTCATTTTGTATAATATTATTAATTTAGTGTATTTTAAAATGTTAAAGGTTTTATGGGAGAACTACGATAGAGAGATAATGCAGATTTGAATTTGTTTCAGTTCAATACATTTTATATTATATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATTTCTATCATA-AATATACATTCTAGGATCTCCTATGTATGTGATATACTGCACTTCATAACATTCACTCATTATTTGAATTTGTT---TACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTAGTACGTCTTTTTGTTCTATGTTTCAAAGGTA-TTCTTCAGAATCTATTAGATATTAATGATTTGAACCCGTGTTGTTATTATATCTGATTCCTCAG
gi|1 : ---GTG--TTT-----TAAGTAAATTCTAATATCATATATTA--------------------AT----AT--ACG-TACATGTACATCAGGATGTTCAAACTTATTCAACGGCCCTTGTTTGAATGCATATTAAAGGGAAA-TTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCTATCTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgttttaagtaaattctaatatcatatattaatatacgtacatgtacatcaggatgttcaaacttattcaacggcccttgtttgaatgcatattaaagggaaattactcgagcaaggtagtgcatgaacccaatcagagctatctattt
gi|10 : gatatttagtcaaaccagtcagtacttcaaactctgttaaaggggaaacagtttagtgttcaagccctttgtacaatgtaaacatctctttactttgttcatattatctataggtctttgcatacaacattcattttgtataatattattaatttagtgtattttaaaatgttaaaggttttatgggagaactacgatagagagataatgcagatttgaatttgtttcagttcaatacattttatattatattttcttaagttgctagtctatagttttcaatttctatcataaatatacattctaggatctcctatgtatgtgatatactgcacttcataacattcactcattatttgaatttgtttacctgcctgagtgcaagttcaataaccttattctgctagtacgtctttttgttctatgtttcaaaggtattcttcagaatctattagatattaatgatttgaacccgtgttgttattatatctgattcctcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTA-GG----CATAA-AGGATGTTGAATT-TCTCATT--GT-CCA-TTATGCACAGATTCAT-TT--AGA-A--CGAGTCTG-CTGTT-TTC--ATATT-TT--T-TT----attt
gi|11 : AA-C--CTAGTTTG-CTATT-T----GC-TT-AT--G-TT----GGTCACGT-TCT---TTG--CTT-----CCCAGGGATCCTTTTATCGAATA
gi|12 : -GA--GACGTGA-TGGGTGTTGTATA-TCCCACT--TC-CCC-TTATGAATATATTCAA-GA--CAA-C--CGAGTCTgaattcacttc
gi|13 : gA-AT--AAA-A--CTAGGCTG-CTGTT-TTCT-GT-CC-TT--GGTT----AC----GT-TTC---GCG--CTT-----CCAAAAGATACTTTTAACATATATTtttagctt
gi|15 : TCAA-CA--AAA-T--CCAGTCTG-CCATT-TTC-----TT-TT--A-TTAGACGC----GT-TCT---GTG--CTT-----TCACGG
gi|2 : GATATTTAGTCAAACCGTTTTTGCGTCTGTACTTCAAACTCTCTTCAAGGGGAAACAGTTAAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTGTATTTTGCTCATATGGTTCATAGGTCTTCACATACAACATTCAATTTGTACAATATTATTAAATGGATGTATTTCA-------AAAGGTTTCATAGGAGAACTACTATTGAGAGATAATGTAGATTTTAATTTATTTCCGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATA--TTTTAATATCTATCGTATATTTTGCATTTTTGGAACTCCTATATATGTGAGATACTGCACTTCATATCCTTTACTCATTATTTG-ATTTGTTTACTACCTACCTGAGTGCAAATTCAATAACTTTATTCTACTTGTACGTCTTTTTGGTCTATGATTCAAAGGTACTTCTTC-GA---TA--AGATATTATTGATTTAACTCCGTGTTATTATT---TCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGTTG-GG--GTCATAA-GGTGTGTTGTATA-TTTCATA--AC-TTT-TCATGAACAGA-TCAG-ATTGAAA-CATCGAG-CTATTTATT-TTC--CT-TT-TT--A-TT----GTT---GT-TTTTCAGTG--CTT-----CTATTTGATTCTTATATCAGATATTA--------------------A----TAT--ATGA-ACATGTACATAAGGATGTACAAACTTATTCAACGGCCCTCGTTTCAAAGCATA-TAAAAGAAAATTGACTCGAGCAAGGT-----ATGA---CAATCA-AGCCATTTa
gi|3 : GA-GGGGTGTTGTATAATTGTAT---ACTCTT-C----AACAGAGT--A-AT--AAAAT--CGAACTCG-ATGTT-GTT--GT-TT-TT--A-TTTTG-GCT---GTCTTT---GTGTTCTTTGCTACCAAGCGATCATTTTAACATACATTATTATACGTATACAGGTACTAGTTGTTGTCAATGGTATATGTATATCAGGACGTTAGGACTTCTTCAATGGCCCTTATTTGAAAGACTGTTAAAGGG-TATTTACTCGAGCAAGGTActct
gi|4 : GGGCTA-GGTGGGCGTGAAGGGGTGTTGAATA-TTTCATT--AT-CTC-CCATGAACAAATTCAA-TT--AAA-C--CGACTCTG-CTATTATTT--TT-TT-TTTGG-TT----G-T---AT-TAT---ATG--CTT-----TCCAGGGGTACTTTTATt
gi|5 : ttgattgagtccttggaatcgtggggcttatttaccgttgcacaaaattgtattaccgcttaagttgGGGTGTTAAGTT-TTACATT--AT-CTA-C-ATGTACAGGTGCAATAT--AA-----CAAGTCTT-CTATT-TTC--AT-TTATT--GGTT----GC----GC-TTT---ATG--CTT-----CCAAAGGATCTATTTATCAGAT-T-----------------------TTGTTGat
gi|6 : ggtgtgtgatatGCTAAGG--GA--TAG-GGGGTTCCGCATA-TTTCATTTGAC-TT----ATGAACATATTCAA-AC--GAA-C--CGAGGCTG-ATAgtata
gi|7 : ggaattatacgacccatttaacgcttaaatatgcaatacggcttaagtcggtCTA-GG--GACGTGA-GAGGTGTTGGGTA-TTTCATC--AT-TTCATCATGAACAAACTCA
gi|8 : gattgctctgaatcatgaaactcattaaatattattggtatttcagctaatt-GG--GA---GA-GAGGTACTGCATA-TTTCAAT--TC-CTC-TCATAAACAGATTCAA-GA--AAG-C--CGAGCCCT-CTAAT-TTttacagctg
gi|9 : ttacaacattgtccgaatattgatattccgctgctattgtGA-GCAGTGTTGCATA-TTGTATT--AC-CTC-CCATGGACACACTCAA-A---AAA-A--CGAGTCTG-CTATT-TTCTACT-TT-TG--G-AC----GC----GT-TTT---GTG--CTT-----CCATGGGATACTTTTATCA-ATATatt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATAAAAATGAGTCTTCTATTTTCATTTCATGAACGCATTCTGTGGAATACTTTTATCAAAAT
Unaligned ( gi|16 ): TTGGTCTCGTTCTTTGCTTCCCGGAGATACTTTTATCAGATAGTATTTAC
Unaligned ( gi|17 ): GAGCGTTGTTGTTAATTATATTAACCCACAT
Alignments
lowQualScore : 3333333 2222 3333333 11 1 1 222 1 1 2222222 222 111111 1111 11111 111 1111 3333333333 11111 6666666666666666666666666666666666666 11111 222 1
lowQualScore : 2222222 1 1 1 1 4444 1 1 1 1 1 3333333 1 1 1 1 88 1 5 1 1 1 1 1 1 1 5 111 1 1 1 5 5 1111111 1 1 111 5 111111 4 1 4 55 4 3333 0 1 33333 8888 1 3 4 888 4 4 3333 3333333333 4 777 55 00000 0 4 1 5 2222222222222222222222222222222222222 0 0 0 7 7 7 77777 000 5
lowQualScore : ....... . . . . .... . . . . . ....... . . . . .. . . . . . . . . . . ... . . . . . ....... . . ... . ...... . . . .. . .... . . ..... .... . . . ... . . .... .......... . ... .. ..... . . . . ..................................... . . . . . . ..... ... .
lowQualScore : 5555555 0 0 0 0 0000 0 0 0 0 0 0000000 0 0 0 0 00 0 5 0 0 0 0 0 0 0 5 000 0 0 0 0 5 5555555 0 0 555 7 333333 4 0 0 55 0 4444 7 3 22222 9999 6 6 0 000 4 4 1111 9999999999 4 000 55 00000 1 0 0 9 6666666666666666666666666666666666666 7 7 7 3 3 3 88888 555 0
consensus : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGCTA-GG--GACGTGA-GGGGTGTTGNATA-TTTCATT--AC-CTC-CCATGAACAGATTCAA-AT--AAA-C--CGAGTCTG-CTATT-TTC--GT-TT-TT--G-TT----GCT---GT-TTT---GTG--CTT-----CCAAG-GGATNCTTTTATCANATAT--------------------TAATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
Reference ( family-66 ) : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGCTA-GG--GACGTGA-GGGGTGTTGNATA-TTTCATT--AC-CTC-CCATGAACAGATTCAA-AT--AAA-C--CGAGTCTG-CTATT-TTC--GT-TT-TT--G-TT----GCT---GT-TTT---GTG--CTT-----CCAAG-GGATNCTTTTATCANATAT--------------------TAATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
gi|1 : GATATTTAGTCAAACCA-------GTCAGTACTTCAAACTCTGTTAAAGGGGAAACAGTTTAGTGTT----CAAGCCCTTTGTACAATGTAAACATCTCTTTACTTTGTTCATATTATCTATAGGTCTTTGCATACAACATTCATTTTGTATAATATTATTAATTTAGTGTATTTTAAAATGTTAAAGGTTTTATGGGAGAACTACGATAGAGAGATAATGCAGATTTGAATTTGTTTCAGTTCAATACATTTTATATTATATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATTTCTATCATA-AATATACATTCTAGGATCTCCTATGTATGTGATATACTGCACTTCATAACATTCACTCATTATTTGAATTTGTT---TACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTAGTACGTCTTTTTGTTCTATGTTTCAAAGGTA-TTCTTCAGAATCTATTAGATATTAATGATTTGAACCCGTGTTGTTATTATATCTGATTCCTCAG
gi|1 : ---GTG--TTT-----T-AAGTAAATTCTAATATCATATAT--------------------TAAT----AT--ACG-TACATGTACATCAGGATGTTCAAACTTATTCAACGGCCCTTGTTTGAATGCATATTAAAGGGAAA-TTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCTATCTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgttttaagtaaattctaatatcatatattaatatacgtacatgtacatcaggatgttcaaacttattcaacggcccttgtttgaatgcatattaaagggaaattactcgagcaaggtagtgcatgaacccaatcagagctatctattt
gi|10 : gatatttagtcaaaccagtcagtacttcaaactctgttaaaggggaaacagtttagtgttcaagccctttgtacaatgtaaacatctctttactttgttcatattatctataggtctttgcatacaacattcattttgtataatattattaatttagtgtattttaaaatgttaaaggttttatgggagaactacgatagagagataatgcagatttgaatttgtttcagttcaatacattttatattatattttcttaagttgctagtctatagttttcaatttctatcataaatatacattctaggatctcctatgtatgtgatatactgcacttcataacattcactcattatttgaatttgtttacctgcctgagtgcaagttcaataaccttattctgctagtacgtctttttgttctatgtttcaaaggtattcttcagaatctattagatattaatgatttgaacccgtgttgttattatatctgattcctcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTA-GG----CATAA-AGGATGTTGAATT-TCTCATT--GT-CCA-TTATGCACAGATTCAT-TT--AGA-A--CGAGTCTG-CTGTT-TTC--ATATT-TT--T-TT----attt
gi|11 : AA-C--CTAGTTTG-CTATT-T----GC-TT-AT--G-TT----GGTCACGT-TCT---TTG--CTT-----CCCAG-GGATCCTTTTATCGAATA
gi|12 : -GA--GACGTGA-TGGGTGTTGTATA-TCCCACT--TC-CCC-TTATGAATATATTCAA-GA--CAA-C--CGAGTCTgaattcacttc
gi|13 : gA-AT--AAA-A--CTAGGCTG-CTGTT-TTCT-GT-CC-TT--GGTT----AC----GT-TTC---GCG--CTT-----CCAAA-AGATACTTTTAACATATAT--------------------Ttttagctt
gi|15 : TCAA-CA--AAA-T--CCAGTCTG-CCATT-TTC-----TT-TT--A-TTAGACGC----GT-TCT---GTG--CTT-----TCACG-G
gi|16 : ---GT-TCT---TTG--CTT-----CCCGG-AGATACTTTTATCAGATAG--------------------TATTTa
gi|2 : ttggtctcGATATTTAGTCAAACCGTTTTTGCGTCTGTACTTCAAACTCTCTTCAAGGGGAAACAGTTAAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTGTATTTTGCTCATATGGTTCATAGGTCTTCACATACAACATTCAATTTGTACAATATTATTAAATGGATGTATTTCA-------AAAGGTTTCATAGGAGAACTACTATTGAGAGATAATGTAGATTTTAATTTATTTCCGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATA--TTTTAATATCTATCGTATATTTTGCATTTTTGGAACTCCTATATATGTGAGATACTGCACTTCATATCCTTTACTCATTATTTG-ATTTGTTTACTACCTACCTGAGTGCAAATTCAATAACTTTATTCTACTTGTACGTCTTTTTGGTCTATGATTCAAAGGTACTTCTTC-GA---TA--AGATATTATTGATTTAACTCCGTGTTATTATT---TCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGTTG-GG--GTCATAA-GGTGTGTTGTATA-TTTCATA--AC-TTT-TCATGAACAGA-TCAG-ATTGAAA-CATCGAG-CTATTTATT-TTC--CT-TT-TT--A-TT----GTT---GT-TTTTCAGTG--CTT-----CTATT-TGATTCTTATATCAGATAT--------------------TAA----TAT--ATGA-ACATGTACATAAGGATGTACAAACTTATTCAACGGCCCTCGTTTCAAAGCATA-TAAAAGAAAATTGACTCGAGCAAGGT-----ATGA---CAATCA-AGCCATTTac
gi|3 : GA-GGGGTGTTGTATAATTGTAT---ACTCTT-C----AACAGAGT--A-AT--AAAAT--CGAACTCG-ATGTT-GTT--GT-TT-TT--A-TTTTG-GCT---GTCTTT---GTGTTCTTTGCTACCAAG-CGATCATTTTAACATACATTATTATACGTATACAGGTACTAGTTGTTGTCAATGGTATATGTATATCAGGACGTTAGGACTTCTTCAATGGCCCTTATTTGAAAGACTGTTAAAGGG-TATTTACTCGAGCAAGGTActct
gi|4 : GGGCTA-GGTGGGCGTGAAGGGGTGTTGAATA-TTTCATT--AT-CTC-CCATGAACAAATTCAA-TT--AAA-C--CGACTCTG-CTATTATTT--TT-TT-TTTGG-TT----G-T---AT-TAT---ATG--CTT-----TCCAG-GGGTACTTTTATt
gi|5 : ttgattgagtccttggaatcgtggggcttatttaccgttgcacaaaattgtattaccgcttaagttgGGGTGTTAAGTT-TTACATT--AT-CTA-C-ATGTACAGGTGCAATAT--AA-----CAAGTCTT-CTATT-TTC--AT-TTATT--GGTT----GC----GC-TTT---ATG--CTT-----CCAAA-GGATCTATTTATCAGAT-T-----------------------TTGTTGat
gi|6 : ggtgtgtgatatGCTAAGG--GA--TAG-GGGGTTCCGCATA-TTTCATTTGAC-TT----ATGAACATATTCAA-AC--GAA-C--CGAGGCTG-ATAgtata
gi|7 : ggaattatacgacccatttaacgcttaaatatgcaatacggcttaagtcggtCTA-GG--GACGTGA-GAGGTGTTGGGTA-TTTCATC--AT-TTCATCATGAACAAACTCA
gi|8 : gattgctctgaatcatgaaactcattaaatattattggtatttcagctaatt-GG--GA---GA-GAGGTACTGCATA-TTTCAAT--TC-CTC-TCATAAACAGATTCAA-GA--AAG-C--CGAGCCCT-CTAAT-TTttacagctg
gi|9 : ttacaacattgtccgaatattgatattccgctgctattgtGA-GCAGTGTTGCATA-TTGTATT--AC-CTC-CCATGGACACACTCAA-A---AAA-A--CGAGTCTG-CTATT-TTCTACT-TT-TG--G-AC----GC----GT-TTT---GTG--CTT-----CCATG-GGATACTTTTATCA-ATAT--------------------att
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATAAAAATGAGTCTTCTATTTTCATTTCATGAACGCATTCTGTGGAATACTTTTATCAAAAT
Unaligned ( gi|17 ): GAGCGTTGTTGTTAATTATATTAACCCACAT
Alignments
lowQualScore : 3333333 2222 3333333 11 1 1 222 1 1 2222222 222 111111 1111 11111 111 1111 3333333333 11111 6666666666666666666666666666666666666 11111 222 1
lowQualScore : 2222222 1 1 1 1 4444 1 1 1 1 1 3333333 1 1 1 1 88 1 5 1 1 1 1 1 1 1 5 111 1 1 1 5 5 1111111 1 1 111 5 111111 4 1 4 55 4 3333 0 1 33333 8888 1 3 4 888 4 4 3333 3333333333 4 777 55 00000 0 4 1 5 2222222222222222222222222222222222222 0 0 0 7 7 7 77777 000 5
lowQualScore : ....... . . . . .... . . . . . ....... . . . . .. . . . . . . . . . . ... . . . . . ....... . . ... . ...... . . . .. . .... . . ..... .... . . . ... . . .... .......... . ... .. ..... . . . . ..................................... . . . . . . ..... ... .
lowQualScore : 5555555 0 0 0 0 0000 0 0 0 0 0 0000000 0 0 0 0 00 0 5 0 0 0 0 0 0 0 5 000 0 0 0 0 5 5555555 0 0 555 7 333333 4 0 0 55 0 4444 7 3 22222 9999 6 6 0 000 4 4 1111 9999999999 4 000 55 00000 1 0 0 9 6666666666666666666666666666666666666 7 7 7 3 3 3 88888 555 0
consensus : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGCTA-GG--GACGTGA-GGGGTGTTGNATA-TTTCATT--AC-CTC-CCATGAACAGATTCAA-AT--AAA-C--CGAGTCTG-CTATT-TTC--GT-TT-TT--G-TT----GCT---GT-TTT---GTG--CTT-----CCAAG-GGATNCTTTTATCANATAT--------------------TAATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
Reference ( family-66 ) : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGCTA-GG--GACGTGA-GGGGTGTTGNATA-TTTCATT--AC-CTC-CCATGAACAGATTCAA-AT--AAA-C--CGAGTCTG-CTATT-TTC--GT-TT-TT--G-TT----GCT---GT-TTT---GTG--CTT-----CCAAG-GGATNCTTTTATCANATAT--------------------TAATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
gi|1 : GATATTTAGTCAAACCA-------GTCAGTACTTCAAACTCTGTTAAAGGGGAAACAGTTTAGTGTT----CAAGCCCTTTGTACAATGTAAACATCTCTTTACTTTGTTCATATTATCTATAGGTCTTTGCATACAACATTCATTTTGTATAATATTATTAATTTAGTGTATTTTAAAATGTTAAAGGTTTTATGGGAGAACTACGATAGAGAGATAATGCAGATTTGAATTTGTTTCAGTTCAATACATTTTATATTATATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATTTCTATCATA-AATATACATTCTAGGATCTCCTATGTATGTGATATACTGCACTTCATAACATTCACTCATTATTTGAATTTGTT---TACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTAGTACGTCTTTTTGTTCTATGTTTCAAAGGTA-TTCTTCAGAATCTATTAGATATTAATGATTTGAACCCGTGTTGTTATTATATCTGATTCCTCAG
gi|1 : ---GTG--TTT-----T-AAGTAAATTCTAATATCATATAT--------------------TAAT----AT--ACG-TACATGTACATCAGGATGTTCAAACTTATTCAACGGCCCTTGTTTGAATGCATATTAAAGGGAAA-TTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCTATCTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgttttaagtaaattctaatatcatatattaatatacgtacatgtacatcaggatgttcaaacttattcaacggcccttgtttgaatgcatattaaagggaaattactcgagcaaggtagtgcatgaacccaatcagagctatctattt
gi|10 : gatatttagtcaaaccagtcagtacttcaaactctgttaaaggggaaacagtttagtgttcaagccctttgtacaatgtaaacatctctttactttgttcatattatctataggtctttgcatacaacattcattttgtataatattattaatttagtgtattttaaaatgttaaaggttttatgggagaactacgatagagagataatgcagatttgaatttgtttcagttcaatacattttatattatattttcttaagttgctagtctatagttttcaatttctatcataaatatacattctaggatctcctatgtatgtgatatactgcacttcataacattcactcattatttgaatttgtttacctgcctgagtgcaagttcaataaccttattctgctagtacgtctttttgttctatgtttcaaaggtattcttcagaatctattagatattaatgatttgaacccgtgttgttattatatctgattcctcagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTA-GG----CATAA-AGGATGTTGAATT-TCTCATT--GT-CCA-TTATGCACAGATTCAT-TT--AGA-A--CGAGTCTG-CTGTT-TTC--ATATT-TT--T-TT----attt
gi|11 : AA-C--CTAGTTTG-CTATT-T----GC-TT-AT--G-TT----GGTCACGT-TCT---TTG--CTT-----CCCAG-GGATCCTTTTATCGAATA
gi|12 : -GA--GACGTGA-TGGGTGTTGTATA-TCCCACT--TC-CCC-TTATGAATATATTCAA-GA--CAA-C--CGAGTCTgaattcacttc
gi|13 : gA-AT--AAA-A--CTAGGCTG-CTGTT-TTCT-GT-CC-TT--GGTT----AC----GT-TTC---GCG--CTT-----CCAAA-AGATACTTTTAACATATAT--------------------Ttttagctt
gi|15 : TCAA-CA--AAA-T--CCAGTCTG-CCATT-TTC-----TT-TT--A-TTAGACGC----GT-TCT---GTG--CTT-----TCACG-G
gi|16 : ---GT-TCT---TTG--CTT-----CCCGG-AGATACTTTTATCAGATAG--------------------TATTTa
gi|2 : ttggtctcGATATTTAGTCAAACCGTTTTTGCGTCTGTACTTCAAACTCTCTTCAAGGGGAAACAGTTAAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTGTATTTTGCTCATATGGTTCATAGGTCTTCACATACAACATTCAATTTGTACAATATTATTAAATGGATGTATTTCA-------AAAGGTTTCATAGGAGAACTACTATTGAGAGATAATGTAGATTTTAATTTATTTCCGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATA--TTTTAATATCTATCGTATATTTTGCATTTTTGGAACTCCTATATATGTGAGATACTGCACTTCATATCCTTTACTCATTATTTG-ATTTGTTTACTACCTACCTGAGTGCAAATTCAATAACTTTATTCTACTTGTACGTCTTTTTGGTCTATGATTCAAAGGTACTTCTTC-GA---TA--AGATATTATTGATTTAACTCCGTGTTATTATT---TCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGTTG-GG--GTCATAA-GGTGTGTTGTATA-TTTCATA--AC-TTT-TCATGAACAGA-TCAG-ATTGAAA-CATCGAG-CTATTTATT-TTC--CT-TT-TT--A-TT----GTT---GT-TTTTCAGTG--CTT-----CTATT-TGATTCTTATATCAGATAT--------------------TAA----TAT--ATGA-ACATGTACATAAGGATGTACAAACTTATTCAACGGCCCTCGTTTCAAAGCATA-TAAAAGAAAATTGACTCGAGCAAGGT-----ATGA---CAATCA-AGCCATTTac
gi|3 : GA-GGGGTGTTGTATAATTGTAT---ACTCTT-C----AACAGAGT--A-AT--AAAAT--CGAACTCG-ATGTT-GTT--GT-TT-TT--A-TTTTG-GCT---GTCTTT---GTGTTCTTTGCTACCAAG-CGATCATTTTAACATACATTATTATACGTATACAGGTACTAGTTGTTGTCAATGGTATATGTATATCAGGACGTTAGGACTTCTTCAATGGCCCTTATTTGAAAGACTGTTAAAGGG-TATTTACTCGAGCAAGGTActct
gi|4 : GGGCTA-GGTGGGCGTGAAGGGGTGTTGAATA-TTTCATT--AT-CTC-CCATGAACAAATTCAA-TT--AAA-C--CGACTCTG-CTATTATTT--TT-TT-TTTGG-TT----G-T---AT-TAT---ATG--CTT-----TCCAG-GGGTACTTTTATt
gi|5 : ttgattgagtccttggaatcgtggggcttatttaccgttgcacaaaattgtattaccgcttaagttgGGGTGTTAAGTT-TTACATT--AT-CTA-C-ATGTACAGGTGCAATAT--AA-----CAAGTCTT-CTATT-TTC--AT-TTATT--GGTT----GC----GC-TTT---ATG--CTT-----CCAAA-GGATCTATTTATCAGAT-T-----------------------TTGTTGat
gi|6 : ggtgtgtgatatGCTAAGG--GA--TAG-GGGGTTCCGCATA-TTTCATTTGAC-TT----ATGAACATATTCAA-AC--GAA-C--CGAGGCTG-ATAgtata
gi|7 : ggaattatacgacccatttaacgcttaaatatgcaatacggcttaagtcggtCTA-GG--GACGTGA-GAGGTGTTGGGTA-TTTCATC--AT-TTCATCATGAACAAACTCA
gi|8 : gattgctctgaatcatgaaactcattaaatattattggtatttcagctaatt-GG--GA---GA-GAGGTACTGCATA-TTTCAAT--TC-CTC-TCATAAACAGATTCAA-GA--AAG-C--CGAGCCCT-CTAAT-TTttacagctg
gi|9 : ttacaacattgtccgaatattgatattccgctgctattgtGA-GCAGTGTTGCATA-TTGTATT--AC-CTC-CCATGGACACACTCAA-A---AAA-A--CGAGTCTG-CTATT-TTCTACT-TT-TG--G-AC----GC----GT-TTT---GTG--CTT-----CCATG-GGATACTTTTATCA-ATAT--------------------att
blockSeqs : TTTTTGC T C C A TGTT G G A A G . T T T C . A T T T T A G T C . TAC T G A C . TA T C . A TGGGCG A T A TG T CATC T ATTG CAT T T A TAC . A TGG AGACGC C TCA TT TGCTA . C A TATTATACGTATACAGGTACTAGTTGTTGTCAATGGT T A T . . .
blockSeqs : . GACG . T . . . CTT G TAT AT T . . TG . . GG TTGGCT . . . . . A T TAATATATGA . . T
blockSeqs : . GTCA . T . . . TTC T GA C G . . G . . GG GTT . . . . . A G
blockSeqs : . GACG . A . . . CCC T AT C T . . C . . G AC . . . . . T G
blockSeqs : . GA . A . . . CTC T CA A C . . G . . A GT . . . . . C T
blockSeqs : . GA . C . . . CCC C AT T T . . T . . A GC . . . . . A G
blockSeqs : . G . . . TC T TT C T . . A . . A GC . . . . . C .
blockSeqs : . C . . . AC C AC C G . . . . . G . . . . . A
blockSeqs : C . . . . . GA C C . . . . . .
blockSeqs : A A T .
blockSeqs : . .
blockSeqCons : GACG** GC********
originalCons : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGCTA-GG--GACGTGA-GGGGTGTTGNATA-TTTCATT--AC-CTC-CCATGAACAGATTCAA-AT--AAA-C--CGAGTCTG-CTATT-TTC--GT-TT-TT--G-TT----GCT---GT-TTT---GTG--CTT-----CCAAG-GGATNCTTTTATCANATAT--------------------TAATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
finalCons : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGCTA-GGGACG--TGA-GGGGTGTTGNATA-TTTCATT--AC-CTC-CCATGAACAGATTCAA-AT--AAA-C--CGAGTCTG-CTATT-TTC--GT-TT-TT--G-TTGC--------GT-TTT---GTG--CTT-----CCAAG-GGATNCTTTTATCANATAT--------------------TAATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATAAAAATGAGTCTTCTATTTTCATTTCATGAACGCATTCTGTGGAATACTTTTATCAAAAT
Unaligned ( gi|17 ): GAGCGTTGTTGTTAATTATATTAACCCACAT
Alignments
lowQualScore : 3333333 2222 3333333 11 1 1 222 1 1 2222222 222 111111 1111 11111 22222222222222222222222222222222 666666666666666666666666666 1111111 11111 222 1
lowQualScore : 2222222 1 1 1 1 4444 1 1 1 1 1 3333333 1 1 1 1 88 1 5 1 1 1 1 1 1 1 5 111 1 1 1 5 5 1111111 1 1 111 5 000000 4 1 3 555 3 2222 0 1 11111 8888 2 77777 3 3 66666666666666666666666666666666 1 666 1 3 1 5 222222222222222222222222222 9999999 0 0 0 7 7 7 77777 000 5
lowQualScore : ....... . . . . .... . . . . . ....... . . . . .. . . . . . . . . . . ... . . . . . ....... . . ... . ...... . . . ... . .... . . ..... .... . ..... . . ................................ . ... . . . . ........................... ....... . . . . . . ..... ... .
lowQualScore : 5555555 0 0 0 0 0000 0 0 0 0 0 0000000 0 0 0 0 00 0 5 0 0 0 0 0 0 0 5 000 0 0 0 0 5 5555555 0 0 555 0 444444 0 0 6 111 6 5555 7 3 99999 8888 9 11111 1 3 99999999999999999999999999999999 1 444 5 6 0 3 111111111111111111111111111 3333333 7 7 7 3 3 3 88888 555 0
consensus : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGCTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGCTA-GG--GACGTGA-GGGGTGTTGNATA-TTTCATT--AC-CTC-CCATGAACAGATTCAA-AT--AAA-C--CGAG-TC-----TG-CTATT-TTC-G--T-TT-T---T--G-T---T----G----CGTTCT---GTGCTTCCAAG-GGATNCTTTTATCANATAT--------------------TAATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
Reference ( family-66 ) : GATATTTAGTCAAACCGTTTTTGCGTCNGTACTTCAAACTCTNTTNAAGGGGAAACAGTTNAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTNTACTTTGCTCATATNGTCCATAGGTCTTCGCATACAACATTCANTTTGTACAATATTATTAANTNGGTGTATTTCAAAATGTTAAAGGTTTCATGGGAGAACTACNATNGAGAGATAATGCAGATTTNAATTTGTTTCNGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATNTCTATCGTATANTNTGCATTCTNGGANCTCCTATGTATGTGANATACTGCACTTCATANCNTTCACTCATTATTTGAATTTGTTTACTACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTNGTACGTCTTTTTGNTCTATGNTTCAAAGGTACTTCTTCAGAATCTATTAGATATTANTGATTTGANCCCGTGTTGTTATTATATCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGCTA-GG--GACGTGA-GGGGTGTTGNATA-TTTCATT--AC-CTC-CCATGAACAGATTCAA-AT--AAA-C--CGAG-TC-----TG-CTATT-TTC-G--T-TT-T---T--G-T---T----G----CGTTTT---GTGCTTCCAAG-GGATNCTTTTATCANATAT--------------------TAATTGTTGT--ACGGTACATGTACATCAGGACGTTCGAACTTATTCAACGGCCCTCGTTTGAAAGCATATTAAAGGGAAATTTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCCATCT
gi|1 : GATATTTAGTCAAACCA-------GTCAGTACTTCAAACTCTGTTAAAGGGGAAACAGTTTAGTGTT----CAAGCCCTTTGTACAATGTAAACATCTCTTTACTTTGTTCATATTATCTATAGGTCTTTGCATACAACATTCATTTTGTATAATATTATTAATTTAGTGTATTTTAAAATGTTAAAGGTTTTATGGGAGAACTACGATAGAGAGATAATGCAGATTTGAATTTGTTTCAGTTCAATACATTTTATATTATATTTTCTTAAGTTGCTAGTCTATAGTTTTCAATTTCTATCATA-AATATACATTCTAGGATCTCCTATGTATGTGATATACTGCACTTCATAACATTCACTCATTATTTGAATTTGTT---TACCTGCCTGAGTGCAAGTTCAATAACCTTATTCTGCTAGTACGTCTTTTTGTTCTATGTTTCAAAGGTA-TTCTTCAGAATCTATTAGATATTAATGATTTGAACCCGTGTTGTTATTATATCTGATTCCTCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNNNN-NNNNNNNNNNNNN-NNNNNNN--NN-NNN-NNNNNNNNNNNNNNNN-NN--NNN-N--NNNN-NN-----NN-NNNNN-NNN-N--N-NN-N---N--N-N---N----N----NNNNNN---GTG-TTTTAAGTAAATTCTAATATCATATAT--------------------TAA----TAT--AC-GTACATGTACATCAGGATGTTCAAACTTATTCAACGGCCCTTGTTTGAATGCATATTAAAGGGAAA-TTACTCGAGCAAGGTAGTGCATGAACCCAATCAGAGCTATCT
gi|10 : TA-GG----CATAA-AGGATGTTGAATT-TCTCATT--GT-CCA-TTATGCACAGATTCAT-TT--AGA-A--CGAG-TC-----TG-CTGTT-TTC-A--TATT-T---T--T-T---T----attt
gi|11 : AA-C--CTAG-TT-----TG-CTATT-T---G--C-TT-A---T--G-T---T----GGTCACGTTCT---TTGCTTCCCAG-GGATCCTTTTATCGAATA
gi|12 : -GA--GACGTGA-TGGGTGTTGTATA-TCCCACT--TC-CCC-TTATGAATATATTCAA-GA--CAA-C--CGAG-TC-----Tgaattcacttc
gi|13 : gA-AT--AAA-A--CTAG-GC-----TG-CTGTT-TTCTG--T-CC-T---T--GGT---T----A----CGTTTC---GCGCTTCCAAA-AGATACTTTTAACATATAT--------------------Ttttagctt
gi|14 : --AAA-A--TGAG-TC-----TT-CTATT-TTC-A--T-TT-CA--T--GAA---C----G----CATTCT---GT--------G-GAATACTTTTATCAAA
gi|15 : ataTCAA-CA--AAA-T--CCAG-TC-----TG-CCATT-TTC------TT-T---T--A-T---TAGACG----CGTTCT---GTGCTTTCACG-Gat
gi|16 : T-T---G--G-T---C----T----CGTTCT---TTGCTTCCCGG-AGATACTTTTATCAGATAG--------------------TATTTa
gi|2 : GATATTTAGTCAAACCGTTTTTGCGTCTGTACTTCAAACTCTCTTCAAGGGGAAACAGTTAAGTGTTTGTTCAAGCCCTTTGTACAATGTGAACATCTCTGTATTTTGCTCATATGGTTCATAGGTCTTCACATACAACATTCAATTTGTACAATATTATTAAATGGATGTATTTCA-------AAAGGTTTCATAGGAGAACTACTATTGAGAGATAATGTAGATTTTAATTTATTTCCGTTCAATACATTTTATATTACATTTTCTTAAGTTGCTAGTCTATA--TTTTAATATCTATCGTATATTTTGCATTTTTGGAACTCCTATATATGTGAGATACTGCACTTCATATCCTTTACTCATTATTTG-ATTTGTTTACTACCTACCTGAGTGCAAATTCAATAACTTTATTCTACTTGTACGTCTTTTTGGTCTATGATTCAAAGGTACTTCTTC-GA---TA--AGATATTATTGATTTAACTCCGTGTTATTATT---TCTGATTCCTCAGTTTCATGGGCCACATTCAAGTTGCTCGAGAAGCCGGCCGCAAAAGGGTTG-GG--GTCATAA-GGTGTGTTGTATA-TTTCATA--AC-TTT-TCATGAACAGA-TCAG-ATTGAAA-CATCGAG--C-----TATTTATT-TTC-C--T-TT-T---T--A-T---T----GT---TGTTTTTCAGTGCTTCTATT-TGATTCTTATATCAGATAT--------------------TAA----TAT--ATGA-ACATGTACATAAGGATGTACAAACTTATTCAACGGCCCTCGTTTCAAAGCATA-TAAAAGAAAATTGACTCGAGCAAGGT-----ATGA---CAATCA-AGCCATTTac
gi|3 : GA-GGGGTGTTGTATAATTGTAT---ACTCTT-C----AACAGAGT--A-AT--AAAAT--CGAACTCGATGTTG-TTGTT-TTT-A--T-TT-TGGCT--G-TCTTT----G----TGTTCT---TTGCTACCAAG-CGATCATTTTAACATACATTATTATACGTATACAGGTACTAGTTGTTGTCAATGGTATATGTATATCAGGACGTTAGGACTTCTTCAATGGCCCTTATTTGAAAGACTGTTAAAGGG-TATTTACTCGAGCAAGGTActct
gi|4 : GGGCTA-GGTGGGCGTGAAGGGGTGTTGAATA-TTTCATT--AT-CTC-CCATGAACAAATTCAA-TT--AAA-C--CGAC-TC-----TG-CTATTATTT-T--T-TT-T---TTGG-T---T----G----TATTAT---ATGCTTTCCAG-GGGTACTTTTATt
gi|5 : ttgattgagtccttggaatcgtggggcttatttaccgttgcacaaaattgtattaccgcttaagttgGGGTGTTAAGTT-TTACATT--AT-CTA-C-ATGTACAGGTGCAATAT--AA-----CAAG-TC-----TT-CTATT-TTC-A--T-TTAT---T--GGT---T----G----CGCTTT---ATGCTTCCAAA-GGATCTATTTATCAGAT-T-----------------------TTGTTGat
gi|6 : ggtgtgtgatatGCTAAGG--GA--TAG-GGGGTTCCGCATA-TTTCATTTGAC-TT----ATGAACATATTCAA-AC--GAA-C--CGAG-GC-----TG-ATAgtata
gi|7 : ggaattatacgacccatttaacgcttaaatatgcaatacggcttaagtcggtCTA-GG--GACGTGA-GAGGTGTTGGGTA-TTTCATC--AT-TTCATCATGAACAAACTCA
gi|8 : gattgctctgaatcatgaaactcattaaatattattggtatttcagctaatt-GG--GA---GA-GAGGTACTGCATA-TTTCAAT--TC-CTC-TCATAAACAGATTCAA-GA--AAG-C--CGAG-CC-----CT-CTAAT-TTttacagctg
gi|9 : ttacaacattgtccgaatattgatattccgctgctattgtGA-GCAGTGTTGCATA-TTGTATT--AC-CTC-CCATGGACACACTCAA-A---AAA-A--CGAG-TC-----TG-CTATT-TTC-TACT-TT-T---G--G-A---C----G----CGTTTT---GTGCTTCCATG-GGATACTTTTATCA-ATAT--------------------att
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GAGCGTTGTTGTTAATTATATTAACCCACAT