lowQualScore : 111111111111111111111111111111111111111111111111111111111111 11111111111111111111
lowQualScore : 1 1 1 111 22 1 111 11111111111111 555555555555555555555555555555555 111 1111111 1111111 11 33333333333333333333 1111 444444444444 1111111 333333 2222 11 33333333333 1 1 1 11 1 1 3333 1 11 1 2222222222 1 222 333333333333333333333333333333333333333333333333333333333333 11111 2 1 111 22 111111 5555555555555 2 1 11 1 11 66666666666666666666 33333333 1 1 66666666 1 4
lowQualScore : 5 6 3 0 3 777 555 11 1 6 666 0 2 0 88888888888888 2 1 5 1 111111111111111111111111111111111 2 8 2 6666 33 2 000 5555555 0 666 66 5 55 1 9999999 5 5 00 2 22222222222222222222 5 5 2 4 555 2222 55 66 000000000000 6 0 2222222 777777 66 4 1 7777 7 4 5 55 1 22222222222 1 0 3 6 7 0 55 22 0 8 5 2222 6 5 99 5 22 3 1 66 1 8888888888 7 3 4 111 666666666666666666666666666666666666666666666666666666666666 3 44444 0 3 222 11 8 2 4 888888 3333333333333 0 0 4 22 4 22 3 2 0 0 6 5 0 6 4 33 1 99999999999999999999 6 44444444 6 6 5 7 6 55555555 7 6 0 6
lowQualScore : . . . . . ... ... .. . . ... . . . .............. . . . . ................................. . . . .... .. . ... ....... . ... .. . .. . ....... . . .. . .................... . . . . ... .... .. .. ............ . . ....... ...... .. . . .... . . . .. . ........... . . . . . . .. .. . . . .... . . .. . .. . . .. . .......... . . . ... ............................................................ . ..... . . ... .. . . . ...... ............. . . . .. . .. . . . . . . . . . .. . .................... . ........ . . . . . ........ . . . .
lowQualScore : 0 0 3 0 2 888 444 66 0 8 999 4 9 2 99999999999999 7 7 0 3 777777777777777777777777777777777 7 9 4 1111 99 9 999 2222222 9 333 33 3 22 7 6666666 1 0 99 9 55555555555555555555 7 3 9 3 000 8888 11 88 222222222222 6 9 5555555 000000 11 0 2 7777 4 0 4 44 7 66666666666 8 0 2 0 0 8 88 00 0 2 0 0000 0 2 55 5 00 5 4 99 4 0000000000 8 3 0 555 555555555555555555555555555555555555555555555555555555555555 0 55555 0 3 444 22 0 2 4 000000 0000000000000 4 0 0 88 2 22 2 5 8 2 4 6 2 0 0 00 0 00000000000000000000 0 00000000 0 0 0 0 0 00000000 0 0 0 0
consensus : ACCTTACA-ATACATT-TTATTACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTTTTGTATATGATATAGCTTTAGCCTAC-NG---------GGCATATTAA-AAGTCACGTGTGACGGCGGGGCCAAA-A-TCCATAT-GC-----GA----GGGCC-AAAA-ATCCATATG----T--GAGGG-CCAA--AAAT-C----CATATGCG--AGGGCC--AAA-A-ATCCATATTAATTN-CA---GNCTGTGTTACAG-TGTTT--T-----AG-TNTAAATG-TTTA-GCGAATTA-TNAG---T--AAAA-TA--TAN--G----A---CAAACCAGTC------NATTCGC---GCAT-TC-ACGCGCGCATCCAA-CGACGACAACNGT-NAGCAACAGTT-AG------ATGGCAAAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATAGCACAGAATAGAAGTAATGATTGTGCAAACGAAGTGCCCGCCG-ACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTC-CTTG--AAGGCATGAAGAATAAAA-----A----AAANGCAAAAC-AAAATACGACGTGAAAANGTTTTTGTGCGACTGGCGACTGGTTTGGAGAAGACGTTACGNCGATTNCANCGCTGGAAGANCCCATNAATATGCANTTAGNNNNNTTTTTCTCTCG-AAATTTACTCCT--TGGTGTAAATAA-ATTTAG-TTTTGANCTT----TAA---A----C----CCCGCTTTGTAAACTNATTTCTNATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCACGCAATGGGGTTTATAAAGTGTGATAAATTATATAGATATATAAATAAATTAAAATAAAATG-AAAAAAAAAG-TAATTAA
Reference ( gi|3 ) : ACGTCATA-ATACATT-TTAGTTCATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGCTTTTTGTGTATGATATAGCTTTAGTCTAC-AG---------GTCATATTAA-AAGTCGCGTGTGACGACAGGACCAAACA-TCCATGT-GC-----GA----GGGCC-AGAA-ATCCATATG----T--GAGGG-CCAG--AAAA-C----CATATGTG--AGGGCC--AAA-A-ATCCATATCAATTT-CC---GTCTGTGCTCTAG-TGTTT--T-----AG-TTTAAATG-TTTA-GCGAATTA-TGAA---T--GGAA-TA--TAA--G----A---CAAACCCGTC------TATTCCG---GCAC-TC-ACGCGCCCTTCTAA-CGACGACAACCGT-TAGCAACAGCC-GG------ATGGCAAAAGGAGTCTTCGGCTCTCTGTTTTACACGCTTTTGGAGTTAA-ACCAACTGATAGCACAGACTCGAAGTAATAATTGGGCAAACAAAGTGCCCA-TGTACATTGTGCAATTTGTGGAAAGCATCAAGAGAATTATACGGAGTCTATATAAGTC-CTTG--AAGGCATGAAGAATAAAA-----A----AAAAGCAAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GC-------TCGGAGAA---GTT-TGTCAA--ATACCATTGGAAGAAC---TGAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCT--TGGTGCAAATAC-ATTTAG-TTTTAATCGT----TAA---A----T----CCCGCTTTGTAAACTGATTTCTAATGGACCCCACCTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTACCTGTTTTAGGGGTACGCCA-GAGA--CATAGA----CACAAATAAAGTATGTGTACACATAATTTAGAAGCATGTGTAATAAAGAAGTTGATTAA
gi|6 : ACCTTACA-GTGTACT-TTATATAATATATT---ACTATATATAG--TAACAAAATAATCTTGTTTTTTGCATA--ATATAGTTTTAGCATAC-CG---------GGCATATTAA-ATGTCACGTTTCACGACAGGGCCAAAAA-TCCATAT-GC-----GA----GAGCA-AAAA-ATCCATATG----T--GAGGG-CCAA--AAAT-C----CATATGTG--AGGGCC--AAA-A-ATCCATATTAATTT-CA---GTTTGTGTTATAG-TGTTT--T-----AG-TATAGATG-TTTA-GCGAATTA-TGAA---T--TAAA-TA--TAT--G----C---CAAACCCGTC------TATTCGT---GCAT-TC-ACACATGCATCCGA-CGGCGACAACTGT-CATCAACAGTT-AAT-----ATGGCAGAAGGAGTCTTCGCCTTTCTGTCTAACAGGCTTTTGGA-TTAAGACCAACTGATAGCACAGAATTGAAGTAATAAGTTTACATACAAAGTGACCACTG-ACACTGTGCAGTTTGT-GAAGACATGAAGA
gi|21 : gtatagttaataagatacgtggctgccaaacaagcaatgATATATACATT-T-ATTACATGTGTTGTCACTATATATAG--TAACGAAATAAGCTTG--TCTTGT-T-TGAAACAGC-TTAGCCTACTCG---------GTT-TAATAA-AATTCataaaaataccaaaaggtaaaacaaaaatacgacatga
gi|7 : ttataaatagaacta-ACACATTGTTATTACATGTGTT---ACTATATATAT--TAAAAAAGTAAACTTGTTTTTTGTATA--ATATAGCTTTAGTCTAC-AG---------GGCATATTAA-AAGTCGCGTGTGAAGACAGGA--------------------------------CC-AAAA-AACCATATG----T--GAGGG-CCAA--AAAT-C----CAT---------------------------ATCAATTT-CC---GTTTGTGCTCTAG-TGTTT--T-----AG-TATAAATG-TTTA-GTCAATTA-TGAA---T--GGAA-TA--TAT--G----C---AAAACCTGAT------TATTTGC---GCAC-TC-ACAGGTGCTTCCAA-CTACAAC-GCTAT-TAGCAACATTT-AG------ATGGCAAAAGGAGTCATCGTCTCTCTGTCTAACACGC-TTTGGAG-------CAACTGATAGCACAGAATAGAAGTAATGATTGTGCAAACAAAGTGCACG-TGGACACTGTGCAATTTATGGAAGAAATCAAGAGAATTATATAGAGTCTATATAAGTC-CTTG--AAGGCATGAAGAATAAAA-----A----A
gi|16 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaat-TTATTACATGTATT---ACTATATATAG-----CAAAA-------GCTTTTT-T-TATGATATAGCTTTTGCCTAC-TT---------GACATATTAA-AGTTCACATGTAACAGTAGG---AAACACTCCATAT-GT-----GA----GGG-C-AATA-ATCCATAT
gi|15 : ttctttaatgtgctgaaacatacagacaaTTTATATGT----ATTTTATATAG--TAATAGAATAAACTTGTTTTTTGTAT--------------GTCTAC-AG---------GGTATATCAA-GAGTCACGTGTGACGGC-GAGCCAAA-A-TCCATAT-GC-----GA----CGACC-A-AA-ATCCATATtaattataggctgtgttacagtgtttactattagggcttagcaatcagtgaaacctaaaattattaacgtaaaccagttaattagtatatcgacaagagcatccaatgacaacaacagtgcagcaaa
gi|5 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctcCATGTGTT---ACTATATA--AAGTAACAAAATAAGCTTGTTTTTT-TATATGATATAACTTTAGTCAAC-AG---------GTCATATTAA-AAGTCGCGTGTGACGACA--------------------------------GGGCC-AAAA-ATCAATATG----T--GAGGG-CCAG--AATT-C----CATGTGTG--AGGGCC--AAA-A-TTCCATATCAATTT-CC---GTCTGTGCTCTAG-TGTTT--T-----CG-TATAAATG-TTTA-GCAAATTA-TGAA---T--GGAA-TA--TAT--A----C---CAAACCCGTC------TATTCGC---GCAA-TC-ACACGCACTTCATA-CGACGACAACCGT-TAGCAACAGTT-AG------ATGGCAAAAGGAGGCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAT-ACCAACCGGTAGCACAGAGTAGAAGTAATGATTGTGCCAACGAAGTGCCCA-CGGACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTC-CTTG--AAGGTATGAAGAATAAAA-----A----AAATGCAAAAC-AAAATCCGTCGTGAAAATGTTTTTGTGCGACTGGC-------TTGGAGAA---GTTACACCAA--CTAACGCTGGAAGAAC---TAAATATGCAGTTAGCCTTTTTTTTCTCTCG-CAATTTACTCCT--TGGTGCAAGTAT-ATTTAG-TTTTTATCGTTGAATAA---A----T----CCCGCTTTGTAAACTGATTTCTTATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTATCTGTTTTTGGGGTACGtaattataggctgtgttacagtgttttactatttaactaattatcaataaaaataaccgcaaaccagtcaattcgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|4 : tattaCATGTGTG---ACTCTATATAGA--AACAAAATAAGCTTGTTATTT-TATAT--TATAGCTTTAGCCTAC-GG---------GACATATTAA-ACGCCACGTGTGACCGCAGGCCCAAAAA-CTCATAT-GC-----GA----CGGC---AAA-ATCTCTAT
gi|17 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaaCATGTATT---ACTA-ATATAAAGTAA--AAATAA--TTA---TTTGTGTGTGTTATAACCTTAGTCTACTAG---------G-CATATTAATAAGTCACGTGCAACAGCGGGA-TAAACG-TCTATAT-GC-----GT----GGGaaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|2 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaaCATGTGTT---TCTATTTATAG--TAACGGAATAAGCTT---TTAT-TGTATGTTATAGACTTG---------------------ATATTTA-AA----TGTGTGCTGGTGAGGCCAAAAACTCCATAT-GA-----GA----GGGCC-AAAA-ATCCATATaaacaatacacatcaatttcaggctggtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|24 : aCATATGCT---ACTCTATATATAGTAACAAAATAAGCTTG---TTTATTTATGAT-TAGCGTTAGcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|28 : tatgcaatgttattataaCGTGTGTT---ACTATATA--AAGTAACAAAATAA
gi|1 : tattaATGTGTT---ACTATATATAG--TAATAAAATAAGCTTG-TTTTTA-GCATGATATAGTTTTAGCCTAC-AG---------GGCATATCAA-ATGTCATGTGTCACGGC----------------------------A----GGGTA-AAAA-ATCCATATG----T--GAGGG-CCAA--AAAT-C----CAT---------------------------ATTAATTT-CA---GTCTATGTTATAG-TGTTT--T-----AG-TATAAATG-ATTA-GCAAATTA-TGAA---T--TAAA-TA--TAT--G----T---CAACCCCGTC------TATTCGT---GCAT-TC-ACACGTGCATCCAG-CAGCGACAACTGT-AAGCAACAGTTAAA------ATGGCAGAAAGAGTCATC-GCT-TCTGTCTAGTAGGCTTTTGGATTTAG-AACAACTAATAGCACAGACTCGAAGTTACAATTGTACGAATGAAGTGCCCACTG-ACACTGTGCAATTTGTGGAAGACATGAAGA
gi|24 : TGTT---ACTATATATAGAGTAGCAataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|10 : tatgcaatgttattataacataTATAGTAACAAAATAAGCTCGTTTTTTGT--ATGATATAGCTTTAGTCTAC-AG---------GGCATATTAA-AGGTCTCGTATGTCGA----------------------------GA----GGGCC-AAAA-ATCCATAAA----C--GAGAG-CCAG--ACAT-C----CGTATGTT--AGGGCC--AAA-A-ATCCATATTAATGT-CC---GTCTGTGCTCTAG-TGGTT--T-----AG-TATAAATG-TTTA-GCGAATTA-TGAA---T--GGAA-TA--TAT--G----A---CAAACCCGTC------TATTCGC---GCAC-TC-AGACGCGCTTCTAA-CGACGACAACCGT-AAGCATTAGTT-AG------ATAGCAAAAGGTGTCATCGCATCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATAGCACAGAATAAAAGTAATGATTGTGCAAACGAAGTGCCCGCTG-GCACTGTGCAATTTGGCGAAGACATCAAaaataagcttgtttatttatgattagcgttag
gi|12 : ATGGTATAGCCTTTGCCAAC-TG---------GGCGTATTAC-AATTCACGTGTGAT-----GGCCAAAT--TATATAT-GC-----CA----GTGCC-AAAA-TTCC
gi|9 : gcgtttaTATAG--TCA-TCTAC-TG---------GGTATAATAA-AAGTCATGTGTGATGGCAG--------A-TCCATAT-G------------------------TCCATATA----C--AAGGGGCCAA--AATT-C----CATATGCA--AGGGAC--AAA-A-CTCGATATTAATTT-AA---GGCTGTGTAACAG-TATTT--T-----CC-ATT-ACTA-TTGA-GCAAATTA-TTAG---T--AAAA-AA--AAA--GTACTA---CAAACCAGTTAACTCGTATT-------TAC-TC-TCGCGC------AACCAACAACAAGAG---AGCAGC-GAC-GG------AT---AAAAtaatttaccaaagcctgtattacaatatttgtgattttactgttcggcaaattatcagtaaatatataacttcaaaccagtcagttagtatatttgcgagagaatccaacgacaacaacaatgcgactactgggttaaaatgacaaatgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|8 : tatTTAGCCTAC-AGTAGCTACTTGGCATATTAT-AATTCATGTGTGACAGC-GGGCCAAAAA-CCCATATAACATTCAGA----GGGAC-AAAA-ATTGATATT----T--GAGGG-CCAA--AAAT-C----CAAATtggcagacgtatcgctttctgaacagtaaactgaatagaaagttgttgtttcaatatgcgcactgacaccatgcgattttgaggacgtgaataaaactgccaaaagtaaaacaaaatagatctaaagaaagtaaacgactgacttagagaatacaattggactgttgcatttgtacttttcaaccgtc
gi|14 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaataataaaaaaacaacattttttcatcatttcAA-AATTCACGTGAGACGACGGGACAAAATA-TC-ACAA-AC-----GA----GGTCA-AATG-ATCCATA------T--GA-----------------------AT-TG------CC--AAACA-ATCCTTATTGATTA-AA---GTCTGTGTTACAG-T------------------------TTTACGAGAATAA-TTAG---T--AAAA-CA---AA--T----AGCCCAAACCTACC------AATTCGT---ACAT-TT-ACACGTGCATCCAA-TGACGACAACtaattataagatgtgttacattatttgctttaacaattatcagttaaaaatataactgcaaaccaatcaattcatatgtatacatgagcatccaacaacaacagtgcagcaactcttaaactaacagattcattgctttctgaacaacaaactcaggattttagaacatatatcaggtacagaagagaagatgttgttaatgatttgattattccaatgacatcatacaatttttaaagaca
gi|19 : AGGACCAAAAA-T-CATAT-GC-----GT----GGGCCTAAAACATCCATATattgtagcgaaggttaaaatgacagattaatcgctcccctgagcaacagatctacggattacactatttatcactcagagaacatgtatttaacgcaagttgccatacatttgacatcatatatttaa
gi|8 : gcgA-TTCATGT-GT-----GACAGCGGGCC-AAAA-ACCCATATAACATTCAGAGGG-ACAA--AAAT-T----GATATTTG--AGGGCC--AAA-A-ATCCAAATTAAT-----------TATA----AGATGTGT--T-----AC-ATTATTTGCTTTA-AC-AATTA-TCAG---TTAAAAA-TA--TAACTG--------CAAACCAATC------AATTCtaactatagaatgtgttacagtgttttaattttaggcgaattatcagtaaaaattaccacaagccagccattttgaaaacatacgcaggcatc
gi|16 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaataataaaaaaacaacattttttcatcatttcttagcctacagtagctacttggcatattataAA-GTTCACATG----T--AACAG-T-AG--GAAA-CACTCCATATGTG--AGGGC---AAT-A-ATCCATATTAATTA-TA---GGCTGTGTTACAG-TGTTTACT-----A---TTAGG-G-CTTA-GC-AATCAGTGAAACCT--AAAATTAT-TAA--C----G---TAAACCAGTT------AATT--A---GTATATCGACAAGAGCATCCAA-TGACAACAACAGTGCAGCAAatatgtatacatgagcatccaacaacaacagtgcagcaactcttaaactaacagattcattgctttctgaacaacaaactcaggattttagaacatatatcaggtacagaagagaagatgttgttaatgatttgattattccaatgacatcatacaatttttaaagaca
gi|12 : ttctttaatgtgctgaaacatacagacaattattacatgtattactatatatagcaaaagctttttttatgatatagcttttgcctacttgacatattaA-ATTCACGTG----T--GATGG-CCA-----AA-T----TATATATGCCAGTGCC--AAA-A-TTCC----TAATTTACCAAAGCCTGTATTACAA-TATTTG-T-----GA-TTTTACTG-TTCG-GCAAATTA-TCAG---T---AAA-TA--TAT--A----ACTTCAAACCAGTC------AGTTAGT---ATAT-TT-GCGAGAGAATCCAA-CGACAACAACAAT---GCGACTACT-GGGTTAAAATGACAAAa
gi|15 : gcgtttaatggtatagcctttgccaactgggcgtattacCACGTG----T--GACGG-CGAGCCAAAATC----CATATGCG--ACGACC--AAA-A--TCCATATTAATTA-TA---GGCTGTGTTACAG-TGTTT--T-----A---CTA-----TTTA-ACTAATTA-TCAA---T--AAAA--A--TAACCG--------CAAACCAGTC------AATTCtgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|2 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctctttatatgtattttatatagtaatagaataaacttgttttttgtatgtctacagggtatatcaagagtG----T--GAGG--CCAA--AAACTC----CATATGAG--AGGGCC--AAA-A-ATCCATATCAATTA-TA---GGCTGTGTTGCAG-TATTT--TCCATGAA-T---AATG-TTAA-GCGGTTTA-TCAG---T--AAAA-CACCT-------------CAAACCAGTC------AATT-CGAATGTAT-TC-TCGAGCA-----AA-CAATGACAACgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|19 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctgG----C--GAGGA-CCA---AAAA-T----CATATGCG--TGGGCCT-AAA-ACATCCATATTAACTA-TA---GAATGTGTTACAG-TGTTT--T-----AA-T--------TTTAGGCGAATTA-TCAG---T--AAAA-AT--TAC--C----A---CAAGCCAG-C------CATTaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|17 : -C----TATATGCG--TGGG----AAACA-ATACACATCAATTT-CA---GGCTGttgaaaacatacgcaggcatc
gi|22 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaacatgtattactaatataaagtaaaaataattatttgtgtgtgttataaccttagtctactaggcatattaataagtcacgtgcaacagcgggataaacgtATATGCG--TGGGCCTAAAA-A-ATCAATATTAATTA-AA---GAATGTGTTACAT-TGTTT---------GCTTTTAATC-TTTG-GGGAATTA-TCAG---T--AAAA-AT--TAC--C----A---CAAGCCAG-C------CATTgtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|23 : GCGCGCA-CGCACACTCTGAAAAT-ATAGTCAATATCAAG-GAATTCTATAGAGACCATACAAGTC-CTTGTCAA--CATGAACAATAAGA-----A----AGAAttgcaa
gi|26 : ATCAAG-GAATTATATAGAG---ATATAAGTC-CTTG--atgagaaataga
gi|5 : ttaaaagtataatttatTCAAG-GACTTATATAGACTCTATATAATTCTCTTG--At
gi|7 : tattacatgtgttactatataaagtaacaaaataagcttgtttttttatatgatataactttagtcaacaggtcatattaaaagtcgcgtgtgacgacagggccaaaaatcaatatgtgagggccagaattccatgtgtgagggccaaaattccatatcaatttccgtctgtgctctagtgttttcgtataaatgtttagcaaattatgaatggaatatataccaaacccgtctattcgcgcaatcacacgcacttcatacgacgacaaccgttagcaacagttagatggcaaaaggaggcatcgcctctctgtctaacacgcttttggagttataccaaccggtagcacagagtagaagtaatgattgtgccaacgaagtgcccacggacactgtgcaatttgtggaagacaTCAAG-GACTTATATAGACTCTATATAATTCTCTTG--Aaggtatgaagaataaaaaaaatgcaaaacaaaatccgtcgtgaaaatgtttttgtgcgactggcttggagaagttacaccaactaacgctggaagaactaaatatgcagttagccttttttttctctcgcaatttactccttggtgcaagtatatttagtttttatcgttgaataaatcccgctttgtaaactgatttcttatggaccccgcgtcgtcatgacgcgcataaacaaaagagcgataactcaaagggaagtaactgtacgctatctgtttttggggtacg
gi|6 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatacacattgttattacatgtgttactatatatattaaaaaagtaaacttgttttttgtataatatagctttagtctacagggcatattaaaagtcgcgtgtgaagacaggaccaaaaaaccatatgtgagggccaaaaatccatatcaatttccgtttgtgctctagtgttttagtataaatgtttagtcaattatgaatggaatatatgcaaaacctgattatttgcgcactcacaggtgcttccaactacaacgctattagcaacatttagatggcaaaaggagtcatcgtctctctgtctaacacgctttggagcaactgatagcacagaatagaagtaatgattgtgcaaacaaagtgcacgtggacactgtgcaatttatggaagaaaAGTT-TGTG--AAGACATGAAGAATAAAAATACCA----AAAGGTAAAACAAAAATACGACATGAaggcatgaagaataaaaaa
gi|1 : gtatagttaataagatacgtggctgccaaacaagcaatgaccttacagtgtactttatataatatattactatatatagtaacaaaataatcttgttttttgcataatatagttttagcataccgggcatattaaatgtcacgtttcacgacagggccaaaaatccatatgcgagagcaaaaaatccatatgtgagggccaaaaatccatatgtgagggccaaaaatccatattaatttcagtttgtgttatagtgttttagtatagatgtttagcgaattatgaattaaatatatgccaaacccgtctattcgtgcattcacacatgcatccgacggcgacaactgtcatcaacagttaatatggcagaaggagtcttcgcctttctgtctaacaggcttttggattaagaccaactgatagcacagaattgaagtaataagtttacatacaaagtgaccactgacactgtgcG--AAGACATGAAGAATAAAA-----ATACCAAATGCAAAAC-AAAATATGATGTGAAAAAG---TTGT-------GCGACTGGTTTGGAGAAGACGTT-GGACGATTACACCAT------ATCCCATCAATATGCATTTAGGAAGGTTTTT-TCTTGCAAAT
gi|11 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtg-AAATTTACTCCA--CGGTGTAAATAA-ATTTAGAATTGGACCTT----TAAAATA----C----CCCGGGGTGT-AACTTATATCTAATCAACTCTACaagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|1 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaAATTCACTCCT--TGGTGCAGGTAA-ATTTAG-TTTTAATCTT----TAA---A----TAAACCCCGCTTTGTAAACTGATTTCTTATGCACACTGTGTCGTCATGACGTGCATAAACAAAAGAGTGATAACTCCAAGGGAAGTCACTGTATGCTATTTGTTTGAGGGGCACACAATGGGGTTTATAAAGTGTGATAAATTATATAGATATATAAATAAATTAAAATAAAATG-AAAAAAAAAG-TAATTAAtatggcgtgtacctgtcagtttgtggggcactcagtggggatatgatatctaacgaaaaatgcttttataaataacttgaaaataataattacataaaagaataatgtaaaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|2 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagatAATTCACCTATGATGGTGTAAATAG-ATTTAA-TTTTGAACCT----TAA---AGATAC----CCCGCTTTGT-AATT--TTTCTAGTCGACTCCAATATGTCATTACGCGTATAAAC------GC-----C---AAGGGAA-T-ACTGTACGTTATCAGTTTGAGGGtaaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|4 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagACTTACGCCA--TAGTGTAAATAAGATTAAA-TTTTAGACTT----TAA---AATA-C----CCCGCTTTCT-AACTTATTTCTaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|27 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgccacgtgtgaccgcaggcccaaaaactcatatgcgacggcaaaatctctataaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtATAAACAAAAGAGCGATAGCTCCAAGTGAAATAACTGTA
gi|18 : cctAACTCCAAGGGAAATAACTATCAGCTCTCAGTTTGTGGGGCAC
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): GGTTGTATTTGTATTTCAATTCTAGTTTTTGTTCTTATATCTTAGAGGAAATATAGGTATGTTGACAACCAGAGTCCAGGATATGTATGCTTGAGTTTGATTGATATTAGCGATATGATACATGTCAACATGTTGACCGATTAATGTAAACACACAATGAGAAAAAATATTATACTTCCTAAACGAAAACTCATAAATTAATCTGGTCCATGGAGTAAATGAAAATACGAATATACCCGTTTGAATTAATTAATAAGAACGTATTCCATAATGGCGTAAATGTGTTTAACGTTGCGCCTTTATAATATCCCGCT
Unaligned ( gi|20 ): ATACATTTATCGTTTTTTTCACAGCTTTTTAAAAGAGAAAATATTATGGACAGATTCCTTGATATGTAATCGCCTGACTATGTAGAGATTTTAGCGACATGAGATACTCTGCCATCATTTTGACTGATATTTGTAA
Unaligned ( gi|25 ): ATAACTGTACGTTATCAGTTTGAAGGAACTCGGTGGGGTATTCAACGTAAAAGTCGTTAGAAAAAA
Alignments
lowQualScore : 1111111111111111
lowQualScore : 111 111 1111111 111111111 11111111 11111 11111 2222222222222222 22222 111 11111 1 1 1111 11111 2222222222 0000000000000000 4444444444444444444444444444444444 2 1 111 444444444 11 111 1 1 111 1 11 111 11111 1 1
lowQualScore : 3 0 5 222 555 444 1 0 2 5555555 2 1 000000000 2 0 66666666 2 99999 2 2 11111 2 5555 2 22222 2 444 2 666 0 0 55 4 2 22 1 7777777777777777 5 4 2 1 444 33 44 8888 33 11111 444 1 1 2 888 33 1 0 33 1 2 1 666 22222 3 6 3 4 444444 1 22 3 4 9 8 1 4 0000 0 0 0 1 2 22222 2 9 4 8 3 6 77 99 4444444444 1 8 1 7 0000000000000000 1111111111111111111111111111111111 1 1 55555 3 0 99 88 6 2 1 6 111 222222222 7 1 1 5 2 22 0 3 1 1 1 8 6 6 6 88 1 3 444 0 11 6 3 7 0 777 3 0 33 000 22222 3 3
lowQualScore : . . . ... ... ... . . . ....... . . ......... . . ........ . ..... . . ..... . .... . ..... . ... . ... . . .. . . .. . ................ . . . . ... .. .. .... .. ..... ... . . . ... .. . . .. . . . ... ..... . . . . ...... . .. . . . . . . .... . . . . . ..... . . . . . . .. .. .......... . . . . ................ .................................. . . ..... . . .. .. . . . . ... ......... . . . . . .. . . . . . . . . . .. . . ... . .. . . . . ... . . .. ... ..... . .
lowQualScore : 7 7 7 222 444 000 2 1 9 3333333 1 0 777777777 5 9 33333333 7 44444 9 4 22222 1 7777 7 55555 5 444 5 999 4 5 66 7 4 55 0 6666666666666666 0 4 5 0 444 44 99 8888 44 66666 444 8 0 4 000 77 9 9 77 1 9 0 666 99999 3 7 3 2 666666 9 33 9 7 4 9 1 2 6666 2 1 2 9 2 55555 0 4 5 8 2 0 99 22 3333333333 0 0 0 3 0000000000000000 0000000000000000000000000000000000 0 0 00000 3 0 22 55 7 2 0 7 777 777777777 3 0 0 0 2 88 8 7 4 0 0 9 6 7 7 33 4 2 000 6 88 4 2 2 0 555 5 0 88 222 00000 3 3
consensus : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGCGGGGC-C-AAA-A---T-C-CATATGCGAGGGC----CAAA-AATCCATATGT----G-A-----GGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T-----AG-TATAAATGTTTA-GCGAATTA-TNAG---T--AAAA-TA----T--A--CGNC---AAACCAGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAACNGT-CAGCGAC-----GG-TTAAA-ATGGCAAAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAGAAGTAATGATTGTGCAAACGAAGTG-----CCCACTGACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----A----AAATGCAAAAC-AAAATACGACGTGAAAATGTTTTTGTGC-----GC-------TCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCT--TGGTGCAAATAN-ATTTAG-TTTTAANC-TT---TAAAA--A----CCCCGCTTTGTAAACTNATTTCTAATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCACTCAG-TGG-GGTATACGAAGTANGATAAATTAAATANATNTA-CAAATA---ANTT-AA--AATAA-AATG-ANA-AAAGAAG-TAAT-TAA
Reference ( family-652 ) : ACCTTACAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGCGGGGC-C-AAA-A---T-C-CATATGCGAGGGC----CAAA-AATCCATATGT----G-A-----GGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T-----AG-TNTAAATGTTTA-GCGAATTA-TNAG---T--AAAA-TA----T--A--NGAC---AAACCAGTCNATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAACNGT-NAGCAAC-----AG-TT-AG-ATGGCAAAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAGAAGTAATGATTGTGCAAACGAAGTG-----CCCGCCGACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----A----AAANGCAAAAC-AAAATACGACGTGAAAANGTTTTTGTGCGACTGGCGACTGGTTTGGAGAAGACGTTACGNCGATTNCANCGCTGGAAGANCCCATNAATATGCANTTAGNNNNNTTTTTCTCTCG-AAATTTACTCCT--TGGTGTAAATAA-ATTTAG-TTTTGANC-TT---TAA----A----CCCCGCTTTGTAAACTNATTTCTNATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCACGCAA-TGG-GGTTTATAAAGTGTGATAAATTATATAGATATA-TAAATA---AATT-AA--AATAA-AATG-AAA-AAAAAAG-TAAT-TAA
gi|1 : ATGTGTT---ACTATATATAG--TAATAAAATAAGCTTGTTTT-TAGCAT--GATATAGTTTTAGCCTACAG---------GGCATATCAA-ATGTCATGTGTCACGGCAGGGTAA-AAA-A---T-C-CATATGTGAGGGC----CAAA-AATCCATAT
gi|1 : AGGGCATATCAAA-TGTC-ATGTGTCACGGCA-----GGG-T---AAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTCTATGTTATAGTGTTT-T-----AG-TATAAATGATTA-GCAAATTA-TGAA---T--TAAA-TA----T--A--TGTC---AACCCCGTCTATTCG--TGCATTCA--CACGTG--CATCCA-GCAGCGACAACTGT-AAGCAAC-----AG-TTAAA-ATGGCAGAAAGAGTCATCGC--TTCTGTCTAGTAGGCTTTTGGATTTAG-AACAACTAATA----GCACAGACTCGAAGTTACAATTGTACGAATGAAGTG-----CCCACTGACACTGTGCAATTTGTGGAAGACATGAAGAtaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|1 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacG--AAGACATGAAGAATA--AAA-----ATACCAAATGCAAAAC-AAAATATGATGTGAAAAAG---TTGT-------GCGACTGGTTTGGAGAAGACGTTG-GACGATTACACC------ATATCCCATCAATATGCATTTAGGAAGGTTTTT-TCTTGCAAATataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|1 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtgAATTCACTCCT--TGGTGCAGGTAA-ATTTAG-TTTTAATC-TT---TAA----ATAAACCCCGCTTTGTAAACTGATTTCTTATGCACACTGTGTCGTCATGACGTGCATAAACAAAAGAGTGATAACTCCAAGGGAAGTCACTGTATGCTATTTGTTTGAGGGGCACACAA-TGG-GGTTTATAAAGTGTGATAAATTATATAGATATA-TAAATA---AATT-AA--AATAA-AATG-AAA-AAAAAAG-TAAT-TAAaagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|10 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagatTATAGTAACAAAATAAGCTCGTTTT-TTGTAT--GATATAGCTTTAGTCTACAG---------GGCATATTAA-AGGTCTCGTATGTCGA----------------------------GAGGGC----CAAA-AATCCATAAAC----G-A-----GAG-C---CAGAC-A---TCCGTATGTTAGGGCC--AAA-A-ATCCATATTAATGTCCGTCTGTGCTCTAGTGGTT-T-----AG-TATAAATGTTTA-GCGAATTA-TGAA---T--GGAA-TA----T--A--TGAC---AAACCCGTCTATTCG--CGCACTCA--GACGCG--CTTCTA-ACGACGACAACCGT-AAGCATT-----AG-TT-AG-ATAGCAAAAGGTGTCATCGCATCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAAAAGTAATGATTGTGCAAACGAAGTG-----CCCGCTGGCACTGTGCAATTTGGCGAAGACATCAAtaaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|11 : -AAATTTACTCCA--CGGTGTAAATAA-ATTTAGAATTGGACC-TT---TAAAAT-A----CCCCGGGGTGT-AACTTATATCTAATCAACTC
gi|11 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaTGTAC-CTGTCAGTTTGTGGGGCACTCAG-TGG-GG-ATATGATATCTAACGAA--AAATGCTTTTA-TAAATA---ACTTGAA--AATAATAATT-ACATAAAAGAA-TAATGTAAtactatggcgtgtacctgtcagtttgtggggcactcagtggggatatgatatctaacgaaaaatgcttttataaataacttgaaaataataattacataaaagaataatgtaaaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaaaatttactccacggtgtaaataaatttagaattggacctttaaaataccccggggtgtaacttatatctaatcaactctactatggcgATGGTATAGCCTTTGCCAACTG---------GGCGTATTAC-AATTCACGTGTGAT-----GGC-C-AAA-T---T-A-TATATGCCAGTGC----CAAA-ATTCCaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : gcgttta-AATTCACGTGT----G-A-----TGG-C---CAAATTA---T--ATATGCCAGTGCC--AAA-A-TTCCTAATTTACCAAAGCCTGTATTACAATATTTGT-----GA-TTTTACTGTTCG-GCAAATTA-TCAG---T--AAA--TA----T--A--TAACTTCAAACCAGTCAGTTAG--TATATTTG--CGAGAG--AATCCA-ACGACAACAACAAT---GCGACTACTGGG-TTAAA-ATGACAAATG----CATCA-CTTTCTGtaatttaccaaagcctgtattacaatatttgtgattttactgttcggcaaattatcagtaaatatataacttcaaaccagtcagttagtatatttgcgagagaatccaacgacaacaacaatgcgactactgggttaaaatgacaaatgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|14 : gcgtttaatggtatagcctttgccaactgggcgtattacAA-AATTCACGTGAGACGACGGGAC---AAA-A---TAT-CACAAACGAGGTC----AAAT-GATCCATATG-------------------------A-A---TT-----------GCC--AAACA-ATCCTTATTGATTAAAGTCTGTGTTACAGT----------------------TTTACGAGAATAA-TTAG---T--AAAA-CAAA--T--A--GCCC---AAACCTACCAATTCG--TACATTTA--CACGTG--CATCCA-ATGACGACAACATTGTAGCGAA-----GG-TTAAA-ATGACA----GATTAATCGCTCCCCTGaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|15 : ACTTTTTAATATACT-CTCTCTTTATATGTATT----TTATATA----GTAATAGAATAAACTTGTTTT-TTGTAT--------------GTCTACAG---------GGTATATCAA-GAGTCACGTGTGACGGC-GAGC-C-AAA-A---T-C-CATATGCGACGAC----C-AA-AATCCATATagcaacagatctacggattacactatttatcactcagagaacatgtatttaacgcaagttgccatacatttgacatcatatatttaa
gi|15 : ataatcctcataaacaccttgactagaattataatggcataa----CAAG-AGTC-ACGTGT----G-A-----CGG-CGAGCCAAA-A---TCCATATGCGACGACC--AAA-A--TCCATATTAATTATAGGCTGTGTTACAGTGTTT-T-----A---CTA----TTTA-ACTAATTA-TCAA---T--AAAA--A----T--AACCG-C---AAACCAGTCAATT----CGTATGTA--AGTGCGAACATCCA-ACAACAAtaattataggctgtgttacagtgttttactatttaactaattatcaataaaaataaccgcaaaccagtcaattcgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|16 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctctttatatgtattttatatagtaatagaataaacttgttttttgtatgtctacagggtatat-TTAT---TACATGTATT---ACTATATATAG-----CAAAA---GCTT---TT-TT---TATGATATAGCTTTTGCCTACTT---------GACATATTAA-AGTTCACATGTAACAGTAGG------AA-ACACT-C-CATATGTGAGGG-----CAAT-AATCCATATtccggtaaaaacaa
gi|16 : ttctttaatgtgctgaaacatacagacaaAA-AGTTCACATGT----A-A-----CAG-T---AGGAA-ACACTCCATATGTGAGGGC---AAT-A-ATCCATATTAATTATAGGCTGTGTTACAGTG-TT-T-----AC-TATTAGGGCTTA-GC-AATCAGTGAAACCT--AAAATTA----TTAA--CG-T---AAACCAGTTAATTAG--TATATCGA--CAAGAG--CATCCA-ATGACAACAACAGTGCAGCAAtaattataggctgtgttacagtgtttactattagggcttagcaatcagtgaaacctaaaattattaacgtaaaccagttaattagtatatcgacaagagcatccaatgacaacaacagtgcagcaaa
gi|17 : ttctttaatgtgctgaaacatacagacaattattacatgtattactatatatagcaaaagctttttttatgatatagcttttgcctacttgacatattACATGTATT---ACTA-ATATAAAGTAA--AAATAA-----TTAT-TTGTGTGTGTTATAACCTTAGTCTACTA---------GGCATATTAATAAGTCACGTGCAACAGCGGGAT-A-AAC-G---T-C-TATATGCGTGGG------AAACAATACACATa
gi|17 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaa-----GGG-A---TAAAC-G---TCTATATGCGTGGG----AAACA-ATACACATCAATTTCAGGCTGcaatttcaggctggtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaacatgtattactaatataaagtaaaaataattatttgtgtgtgttataaccttagtctactaggcatattaataagtcacgtgcaacagcAACTCCAAGGGAAATAACTATCAGCTCTCAGTTTGTGGGGCACTCAATTAG-AGTATTCGAAGTAAAATTCGTTAAAAAGAACTAGCAAATAACTAACT-AATCAAT-A-AATG-ATA-ATAGAAgtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|19 : tttacgccatagtatatatagatttaactttaagccttaaaagcaacttacttccaaccGC----G-A-----GGA-C---CAAAA-A---TC-ATATGCGTGGGCCT-AAA-ACATCCATATTAACTATAGAATGTGTTACAGTGTTT-T-----AA-T-------TTTAGGCGAATTA-TCAG---T--AAAA-AT----T--A--CCAC---AAGCCAGCCATTTTGAAAACAT--A--CGCAGG--CATCcttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|2 : ACATGTGTT---TCTATTTATAG--TAACGGAATAAGCTT--TTA-TTGTATGT--TATAG---------ACTT---------G--ATATTTA-AA----TGTGTGCTGGTGAGGC-C-AAA-A---
gi|2 : GT----G-A-----GG--C---CAAAA-AC--TCCATATGAGAGGGCC--AAA-A-ATCCATATCAATTATAGGCTGTGTTGCAGTATTT-TCCATGAA-T---AATGTTAA-GCGGTTTA-TCAG---T--AAAA-CA----C--C--T--C---AAACCAGTCAATTCGAATGTATTCT--CGAGCA--AA--CA-ATGACAACAATAG---GGCAGCGA---GG-TTAAG-ATGACAGATG----CATCGactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|2 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctgAATTCACCTATGATGGTGTAAATAG-ATTTAA-TTTTGAAC-CT---TAAAGATA----CCCCGCTTTGTAA--TT-TTTCTAGTCGACTCCAATATGTCATTACGCGTATAAACG--------------CCAAGGGAA-T-ACTGTACGTTATCAGTTTGAGGGA-ACTCAG-TGGTGGTGTTCAAAGTAAGATACGTTA-ATAAAatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|21 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagATACATT-T-AT---TACATGTGTTGTCACTATATAT--AGTAACGAAATAAGCTTGTCTTGTT-----TGAAACAGC-TTAGCCTACTC---------GGTTTAATAA-AATTCgagcaacaacggagaagaatactgt
gi|22 : ttataaatagaactaatatATATGCGTGGGCCTAAAA-A-ATCAATATTAATTAAAGAATGTGTTACATTGTTT--------GCTTTTAATCTTTG-GGGAATTA-TCAG---T--AAAA-AT----T--A--CCAC---AAGCCAGCCATTTTG--C
gi|23 : ATATCAAG-GAATTCTATAGAGACCATACAAGTCCTTGTCAA--CATGAACAATAAGAAA-----G----AAATGAGAAAT-AGAaa
gi|24 : gcgcgcacgcacactctgaaaatatagtca-TTAT---AACATATGCT---ACTCTATATATAGTAACAAAATAAGCTTGTTTA-TT---TATGAT-TAGCGTTAG
gi|25 : tatgcaatgttaTAACTGTACGTTATCAGTTTGAAGGA-ACTCGG-TGG-GGT
gi|26 : aATATCAAG-GAATTATATAGAG---ATATAAGTCCTTG--attcaacgtaaaagtcgttagaaaaaa
gi|27 : ttaaaagtataatttATAAACAAAAGAGCGATAGCTCCAAGTGAAATAACTGTAt
gi|28 : cctTAT---TACGTGTGTT---AC--TATATAAAGTAACAAAATAA
gi|3 : ACGTCATAATACATT-TTAG---TTCATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGCTTT-TTGTGTATGATATAGCTTTAGTCTACAG---------GTCATATTAA-AAGTCGCGTGTGACGACAGGAC-C-AAACA---T-C-CATGTGCGAGGGC----CAGA-AATCCATATGT----G-A-----GGG-C---CAGAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T-----AG-TTTAAATGTTTA-GCGAATTA-TGAA---T--GGAA-TA----T--A--AGAC---AAACCCGTCTATTCC--GGCACTCA--CGCGCC--CTTCTA-ACGACGACAACCGT-TAGCAAC-----AG-CC-GG-ATGGCAAAAGGAGTCTTCGGCTCTCTGTTTTACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGACTCGAAGTAATAATTGGGCAAACAAAGTG-----CCCATGTACATTGTGCAATTTGTGGAAAGCATCAAGAGAATTATACGGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----A----AAAAGCAAAAC-AAAATACGACGTGAAAATGTTTTTGTGC--------------TCGGAGAA---GTT-TGTCAA--ATACCATTGGAAGAAC---TGAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCT--TGGTGCAAATAC-ATTTAG-TTTTAATC-GT---TAA----A----TCCCGCTTTGTAAACTGATTTCTAATGGACCCCACCTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTACCTGTTTTAGGGGTACGCCA--GA-GA--CATAGA----CACAAATAAAGTATGTGTA-CACATA---ATTT-AG--AAGCA-TGTGTAAT-AAAGAAGTTGAT-TAA
gi|4 : ACATGTGTG---ACTCTATATAGA--AACAAAATAAGCTTGTTAT-TT-TATAT--TATAGCTTTAGCCTACGG---------GACATATTAA-ACGCCACGTGTGACCGCAGGCC-C-AAA-A---A-CTCATATGCGACGGC------AA-AATCTCTAT
gi|4 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaCCACGTGT----G-ACCGCAGGC-C---CAAAA-A---CTCATATGCGACGGC----AA-A-ATCTCTATAAATTGTAGGCAGAGTCACAGTATTT-TCC---AA-T---AATATTCA-GCAAATTA-TTCT---T--AAGA-AA----T--A--ATCT------CTAAT-AATTCG--TT--TTTA--TTCGCG-------A-GCAACAACAG-AG--CAGCGAC-----GA-TTAAA-ATGGCA----GACCCATCG-CTTTTTGAACAACACACTCAGGGA-TTAAGACCAaaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|4 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgACTTACGCCA--TAGTGTAAATAAGATTAAA-TTTTAGAC-TT---TAAAAT-A----CCCCGCTTTCT-AACTTATTTCTtgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|5 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgccacgtgtgaccgcaggcccaaaaactcatatgcgacggcaaaatctctataaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtTAT---TACATGTGTT---ACTATATA--AAGTAACAAAATAAGCTTGTTTT-TT-TATATGATATAACTTTAGTCAACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC----------------------------AGGGC----CAAA-AATCAATATGT----G-A-----GGG-C---CAGAA-T---TCCATGTGTGAGGGCC--AAA-A-TTCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T-----CG-TATAAATGTTTA-GCAAATTA-TGAA---T--GGAA-TA----T--A--TACC---AAACCCGTCTATTCG--CGCAATCA--CACGCA--C-TTCATACGACGACAACCGT-TAGCAAC-----AG-TT-AG-ATGGCAAAAGGAGGCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAT-ACCAACCGGTA----GCACAGAGTAGAAGTAATGATTGTGCCAACGAAGTG-----CCCACGGACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGTATGAAGAATA--AAA-----A----AAATGCAAAAC-AAAATCCGTCGTGAAAATGTTTTTGTGCGACTGGC-------TTGGAGAA---GTTACACCAACT--AACGCTGGAAGAAC---TAAATATGCAGTTAGCCTTTTTTTTCTCTCG-CAATTTACTCCT--TGGTGCAAGTAT-ATTTAG-TTTTTATCGTTGAATAA----A----TCCCGCTTTGTAAACTGATTTCTTATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTATCTGTTTTTGGGGTACG
gi|6 : ACCTTACAGTGTACT-TTATA--TA-ATATATT---ACTATATATAG--TAACAAAATAATCTTGTTTT-TTGCATA--ATATAGTTTTAGCATACCG---------GGCATATTAA-ATGTCACGTTTCACGACAGGGC-C-AAA-AA--T-C-CATATGCGAGAGC----AAAA-AATCCATATGT----G-A-----GGG-C---CAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTTTGTGTTATAGTGTTT-T-----AG-TATAGATGTTTA-GCGAATTA-TGAA---T--TAAA-TA----T--A--TGCC---AAACCCGTCTATTCG--TGCATTCA--CACATG--CATCCG-ACGGCGACAACTGT-CATCAAC-----AG-TT-AATATGGCAGAAGGAGTCTTCGCCTTTCTGTCTAACAGGCTTTTGGA-TTAAGACCAACTGATA----GCACAGAATTGAAGTAATAAGTTTACATACAAAGTG-----ACCACTGACACTGTGCAGTTTGT-GAAGACATGAAGA
gi|6 : gtatagttaataagatacgtggctgccaaacaagcaatgAGTTTGTG--AAGACATGAAGAATA--AAAATACCA----AAAGGTAAAACAAAAATACGACATGAataaaaataccaaaaggtaaaacaaaaatacgacatga
gi|7 : gtatagttaataagatacgtggctgccaaacaagcaatgaccttacagtgtactttatataatatattactatatatagtaacaaaataatcttgttttttgcataatatagttttagcataccgggcatattaaatgtcacgtttcacgacagggccaaaaatccatatgcgagagcaaaaaatccatatgtgagggccaaaaatccatatgtgagggccaaaaatccatattaatttcagtttgtgttatagtgttttagtatagatgtttagcgaattatgaattaaatatatgccaaacccgtctattcgtgcattcacacatgcatccgacggcgacaactgtcatcaacagttaatatggcagaaggagtcttcgcctttctgtctaacaggcttttggattaagaccaactgatagcacagaattgaagtaataagtttacatacaaagtgaccactgacactgtgcACACATTGTTAT---TACATGTGTT---ACTATATATAT--TAAAAAAGTAAACTTGTTTT-TTGTATA--ATATAGCTTTAGTCTACAG---------GGCATATTAA-AAGTCGCGTGTGAAGACAGGAC-CAAAA-A---A-C-CATATGTGAGGGC----CAAA-AATCCATAT
gi|7 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatAGGGCATATTAAA-AGTC-GCGTGT----G-AAGACAGGA-C---CAAAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTTTGTGCTCTAGTGTTT-T-----AG-TATAAATGTTTA-GTCAATTA-TGAA---T--GGAA-TA----T--A--TGCA---AAACCTGATTATTTG--CGCACTCA--CAGGTG--CTTCCA-ACTACAACG-CTAT-TAGCAAC-----AT-TT-AG-ATGGCAAAAGGAGTCATCGTCTCTCTGTCTAACACGCTTT-GGAG-------CAACTGATA----GCACAGAATAGAAGTAATGATTGTGCAAACAAAGTG-----CACGTGGACACTGTGCAATTTATGGAAGAAATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----A----Acaatttccgtttgtgctctagtgttttagtataaatgtttagtcaattatgaatggaatatatgcaaaacctgattatttgcgcactcacaggtgcttccaactacaacgctattagcaacatttagatggcaaaaggagtcatcgtctctctgtctaacacgctttggagcaactgatagcacagaatagaagtaatgattgtgcaaacaaagtgcacgtggacactgtgcaatttatggaagaaatcaagagaattatatagagtctatataagtccttgaaggcatgaagaataaaaaa
gi|8 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatacacattgttattacatgtgttactatatatattaaaaaagtaaacttgttttttgtataatatagctttagtctacAATAAAAAAACAA---CATTTT-TT---CATCATTT---CTTAGCCTACAGTAGCTACTTGGCATATTAT-AATTCATGTGTGACAGCGGGCC-A-AAA-A---C-C-CATAT--------------AA-CATTCA---------G-A-----GGG-A---CAAAA-A---TTGATATTTGAGGGCC--AAA-A-ATCCAAATTAATTATAAGATGTGTTACATTATTT--------G-C-------TTTA-AC-AATTA-TCAG---TTAAAAA-TA----T--AACTG-C---AAACCAATCAATTCA--TATGTATA--CATGAG--CATCCA----ACAACAACAGTGCAGCAAC-----TC-TT-AA-A---CTAACAGATTCATTG-CTTTCTGAACAACAAAC-TCAGGATTTTA-G--AACATATATCAGGTACAGAAGAGAAG--ATG-TTGTT--AATGATTTGATTATTCCAATGACATCATACAATTT-TTAAAGACA
gi|9 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaatCTACTG---------GGTATAATAA-AAGTCATGTGTGATGGCAG----------A---T-C-CATATG------------------TCCATATAC----A-A-----GGGGC---CAAAA-T---TCCATATGCAAGGGAC--AAA-A-CTCGATATTAATTTAAGGCTGTGTAACAGTATTT-T------C-CATTACTATTGA-GCAAATTA-TTAG---T--AAAA-AAAAAGT--A--CTAC---AAACCAGTTAACT----CGTATTTACTCTCGCG--CAACCA-ACAACAA-GAGAG--CAGCGAC-----GGATA-AA-ATGGCAGACG----TATCG-CTTTCTG---AACA-G----------TAA-ACT-----------------GAATAGAA--AGTTGTTGTTTCAAT---ATG-----CGCACTGACACCATGCGATTT-T-GAGGACGTGAATAAAACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGTTGTATTTGTATTTCAATTCTAGTTTTTGTTCTTATATCTTAGAGGAAATATAGGTATGTTGACAACCAGAGTCCAGGATATGTATGCTTGAGTTTGATTGATATTAGCGATATGATACATGTCAACATGTTGACCGATTAATGTAAACACACAATGAGAAAAAATATTATACTTCCTAAACGAAAACTCATAAATTAATCTGGTCCATGGAGTAAATGAAAATACGAATATACCCGTTTGAATTAATTAATAAGAACGTATTCCATAATGGCGTAAATGTGTTTAACGTTGCGCCTTTATAATATCCCGCT
Unaligned ( gi|20 ): ATACATTTATCGTTTTTTTCACAGCTTTTTAAAAGAGAAAATATTATGGACAGATTCCTTGATATGTAATCGCCTGACTATGTAGAGATTTTAGCGACATGAGATACTCTGCCATCATTTTGACTGATATTTGTAA
Alignments
lowQualScore : 111 111 1111111 111111111 333333333333333333 1111 222222222222 1111 1111111 11111111 1 11111 111 1 22222 5555555555 222 22 111111111 222 1 1 111 22222 1 11111 11 111 2222 22 1
lowQualScore : 1 33 5 111 555 444 1 0 2 5555555 2 1 000000000 2 0 111111111111111111 44 0000 2 5555 2 66666 2 444 2 666 3 1 55 4 2 22 1 2 2 111111111111 0 5 4 2 1 444 33 2 55 8888 55 1111 1 0 2 888 33 1 0 33 1 2 2222222 888888 5 00000000 1 22 3 4 9 8 1 4 0 9999 777 3 777 0 11111 0 4 0 111 22 1 1 1 1 77 77 99 33333 1 1 0 8 9 3 9999999999 3 333 44 1 0 777777777 333 1 3 0 000 66 5 1 2 0 77 00000 8 1 2 2 22 0 3 1 1 1 8 5 6 6 4 6 3 777 0 222 1 1 0 1 88888 33 000 0000 1 00 3
lowQualScore : . .. . ... ... ... . . . ....... . . ......... . . .................. .. .... . .... . ..... . ... . ... . . .. . . .. . . . ............ . . . . . ... .. . .. .... .. .... . . . ... .. . . .. . . ....... ...... . ........ . .. . . . . . . . .... ... . ... . ..... . . . ... .. . . . . .. .. .. ..... . . . . . . .......... . ... .. . . ......... ... . . . ... .. . . . . .. ..... . . . . .. . . . . . . . . . . . . ... . ... . . . . ..... .. ... .... . .. .
lowQualScore : 0 33 0 000 444 000 2 1 9 3333333 1 0 777777777 5 9 111111111111111111 22 0000 1 7777 7 22222 5 444 5 999 5 9 66 7 4 55 0 4 4 222222222222 4 0 4 5 0 444 44 5 55 8888 99 8888 8 8 4 000 77 9 9 77 1 9 5555555 444444 2 66666666 9 33 9 7 4 9 1 4 8 4444 888 6 111 9 11111 1 4 7 666 11 7 5 7 4 99 77 22 33333 0 4 8 0 2 5 7777777777 7 333 00 0 7 333333333 333 0 3 0 000 77 7 0 1 1 99 33333 4 0 5 2 88 8 7 4 0 0 9 7 7 7 0 3 3 000 6 666 0 0 0 0 55555 88 222 0000 0 00 3
consensus : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGCGGGGC-C-AAA-A---T-CCATATGCGAGGGC----CAAA-AATCCATATGC----G-A-----GGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCT-GTG-TTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A-CNNCAAACCAGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCN--TGGTGCAAATAN-ATTTAG-TTTTAANCNTTAA--A--A--ACCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GGTATNCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
Reference ( family-652 ) : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGCGGGGC-C-AAA-A---T-CCATATGCGAGGGC----CAAA-AATCCATATGT----G-A-----GGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCT-GTG-TTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A-CGNCAAACCAGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAAAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCAAAAC-AAAATACGACGTGAAAATGTTTTTGTGC-----GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCT--TGGTGCAAATAN-ATTTAG-TTTTAANCTTTAA--A--A--ACCCCGCTTTGTAAACTNATTTCTAATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GGTATACGAAGTANGATAAATTAAATANATNTA-CAAATAANT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
gi|1 : ATGTGTT---ACTATATATAG--TAATAAAATAAGCTTGTTTT-TAGCAT--GATATAGTTTTAGCCTACAG---------GGCATATCAA-ATGTCATGTGTCACGGCAGGGTAA-AAA-A---T-CCATATGTGAGGGC----CAAA-AATCCATAT
gi|1 : AGGGCATATCAAA-TGTC-ATGTGTCACGGCA-----GGG-T---AAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTCT-ATG-TTATAGTGTTT-T--A-G-TATAAATGATTA-GCAAATTA-TGAA---T--TAA-A-TA----T--A-TGTCAACCCCGTCTATTCG--TGCATTCA--CACGTG--CATCCA-GCAGCGACAAC--TGT-AAGCAAC-----AGTTAAAATGGCAGAAAGAGTCATCGC--TTCTGTCTAGTAGGCTTTTGGATTTAG-AACAACTAATA----GCACAGACTCGAAG---TTACAATTGTACGAATGAAGTG-----CCCACTG-ACACTGTGCAATTTGTGGAAGACATGAAGA-------ATAAAA---ATA-----CC-----AA---ATGCAAAACA--AAAT----ATGATGTGAA---AAAGT----TGTGCGACTGGTTT--------------GGAGAAGACGTTG-GACGATTACACC------ATATCCCATCAATATGCATTTAGGAAGGTTTTT-TCTTGCAAATtaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|1 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacAATTCACTCCT--TGGTGCAGGTAA-ATTTAG-TTTTAATCTTTAA--ATAA--ACCCCGCTTTGTAAACTGATTTCTTATGCACACTGTGTCGTCATGACGTGCATAAACAAAAGAGTGATAACTCCAAGGGAAGTCACTGTATGCTATTTGTTTGAGGGGCAC-ACAA-TGG-GGTTTATAAAGTGTGATAAATTATATAGATATA-TAAATAAAT---T-AA--AATAA-AAT--G-AAAAAAAAAG-TAAT-TAAaagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|10 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagatTATAGTAACAAAATAAGCTCGTTTT-TTGTAT--GATATAGCTTTAGTCTACAG---------GGCATATTAA-AGGTCTCGTATGTCGA---------------------------GAGGGC----CAAA-AATCCATAAAC----G-A-----GAG-C---CAGAC-A---TCCGTATGTTAGGGCC--AAA-A-ATCCATATTAATGTCCGTCT-GTG-CTCTAGTGGTT-T--A-G-TATAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A-TGACAAACCCGTCTATTCG--CGCACTCA--GACGCG--CTTCTA-ACGACGACAAC--CGT-AAGCATT-----AGTT-AGATAGCAAAAGGTGTCATCGCATCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAAAAG---TAATGATTGTGCAAACGAAGTG-----CCCGCTG-GCACTGTGCAATTTGGCGAAGACATCAAtaaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|11 : -AAATTTACTCCA--CGGTGTAAATAA-ATTTAGAATTGGACCTTTAA--A--AT-ACCCCGGGGTGT-AACTTATATCTAATCAACTC
gi|11 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaTGTAC-CTGTCAGTTTGTGGGGCAC-TCAG-TGG-GG-ATATGATATCTAACGAA--AAATGCTTTTA-TAAATAACT---TGAA--AATAATAATTAC-ATAAAAGAA--TAATGTAAtactatggcgtgtacctgtcagtttgtggggcactcagtggggatatgatatctaacgaaaaatgcttttataaataacttgaaaataataattacataaaagaataatgtaaaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaaaatttactccacggtgtaaataaatttagaattggacctttaaaataccccggggtgtaacttatatctaatcaactctactatggcgATGGTATAGCCTTTGCCAACTG---------GGCGTATTAC-AATTCACGTGTGAT-----GGC-C-AAA-T---T-ATATATGCCAGTGC----CAAA-ATTCCaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : gcgttta-AATTCACGTGT----G-A-----TGG-C---CAAATTA---T--ATATGCCAGTGCC--AAA-A-TTCCTAATTTACCAAAGCCT-GTA-TTACAATATTTGT--G-A-TTTTACTGTTCG-GCAAATTA-TCAG---T--AAATA-TA----T--AACTTCAAACCAGTCAGTTAG--TATATTTG--CGAGAG--AATCCA-ACGACAACAAC--AAT---GCGACTACTGGGTTAAAATGACAAATG----CATCA-CTTTCTGtaatttaccaaagcctgtattacaatatttgtgattttactgttcggcaaattatcagtaaatatataacttcaaaccagtcagttagtatatttgcgagagaatccaacgacaacaacaatgcgactactgggttaaaatgacaaatgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|14 : gcgtttaatggtatagcctttgccaactgggcgtattacAA-AATTCACGTGAGACGACGGGAC---AAA-A---TATCACAAACGAGGTC----AAAT-GATCCATATG-------------------------A-A---TT-----------GCC--AAACA-ATCCTTATTGATTAAAGTCT-GTG-TTACAGT--------------------TTTACGAGAATAA-TTAG---T--AAA-A-CAAA--T--A-GCCCAAACCTACCAATTCG--TACATTTA--CACGTG--CATCCA-ATGACGACAACATTGT--AGCGAA-----GGTTAAAATGACA----GATTAATCGCTCCCCTGaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|15 : ACTTTTTAATATACT-CTCTCTTTATATGTATT----TTATATA----GTAATAGAATAAACTTGTTTT-TTGTAT--------------GTCTACAG---------GGTATATCAA-GAGTCACGTGTGACGGC-GAGC-C-AAA-A---T-CCATATGCGACGAC----C-AA-AATCCATATagcaacagatctacggattacactatttatcactcagagaacatgtatttaacgcaagttgccatacatttgacatcatatatttaa
gi|15 : ataatcctcataaacaccttgactagaattataatggcataa----CAAG-AGTC-ACGTGT----G-A-----CGG-CGAGCCAAA-A---TCCATATGCGACGACC--AAA-A--TCCATATTAATTATAGGCT-GTG-TTACAGTGTTT-T--A-C-TA------TTTA-ACTAATTA-TCAA---T--AAA-A--A----TA-A-CCGCAAACCAGTCAATT----CGTATGTA--AGTGCGAACATCCA-ACAACAAtaattataggctgtgttacagtgttttactatttaactaattatcaataaaaataaccgcaaaccagtcaattcgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|16 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctctttatatgtattttatatagtaatagaataaacttgttttttgtatgtctacagggtatat-TTAT---TACATGTATT---ACTATATATAG-----CAAAA---GCTT---TT-TT---TATGATATAGCTTTTGCCTACTT---------GACATATTAA-AGTTCACATGTAACAGTAGG------AA-ACACT-CCATATGTGAGGG-----CAAT-AATCCATATtccggtaaaaacaa
gi|16 : ttctttaatgtgctgaaacatacagacaaAA-AGTTCACATGT----A-A-----CAG-T---AGGAA-ACACTCCATATGTGAGGGC---AAT-A-ATCCATATTAATTATAGGCT-GTG-TTACAGTG-TT-T--A-C-TATTAGGGCTTA-GC-AATCAGTGAAACCT--AAA-ATTA----TTAA-CGT-AAACCAGTTAATTAG--TATATCGA--CAAGAG--CATCCA-ATGACAACAAC--AGTGCAGCAAtaattataggctgtgttacagtgtttactattagggcttagcaatcagtgaaacctaaaattattaacgtaaaccagttaattagtatatcgacaagagcatccaatgacaacaacagtgcagcaaa
gi|17 : ttctttaatgtgctgaaacatacagacaattattacatgtattactatatatagcaaaagctttttttatgatatagcttttgcctacttgacatattTATAA-ACATT-GCAA----ACATGTATT---ACTA-ATATAAAGTAA--AAATAA-----TTAT-TTGTGTGTGTTATAACCTTAGTCTACTA---------GGCATATTAATAAGTCACGTGCAACAGCGGGAT-A-AAC-G---T-CTATATGCGTGGG------AAACAATACACATa
gi|17 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattga-----GGG-A---TAAAC-G---TCTATATGCGTGGG----AAACA-ATACACATCAATTTCAGGCTGGTATTTAAAGAATAT-T--A-A-TAAAAAcaatttcaggctggtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaacatgtattactaatataaagtaaaaataattatttgtgtgtgttataaccttagtctactaggcatattaataagtcacgtgcaacagcTTTACGCCA--TAGTATATATAG-ATTTAA-CTTTAAGCCTTAA--A--A--GC-----------AACTTACTTCCAACCAACTCCaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : AACTCCAAGGGAAATAACTATCAGCTCTCAGTTTGTGGGGCAC-TCAATTAG-AGTATTCGAAGTAAAATTCGTTAAAAAGAACTAGCAAATAACTAACT-AATCAAT-A-AAT--G-ATAATAGAAaagggaaataactatcagctctcagtttgtggggcactcaattagagtattcgaagtaaaattcgttaaaaagaactagcaaataactaactaatcaataaatgataatagaacttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|19 : tttacgccatagtatatatagatttaactttaagccttaaaagcaacttacttccaaccGC----G-A-----GGA-C---CAAAA-A---TC-ATATGCGTGGGCCT-AAA-ACATCCATATTAACTATAGAAT-GTG-TTACAGTGTTT-T--A-A-T-------TTTAGGCGAATTA-TCAG---T--AAA-A-AT----T--A-CCACAAGCCAGCCATTTTGAAAACAT--A--CGCAGG--CATCcttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|2 : ACATGTGTT---TCTATTTATAG--TAACGGAATAAGCTT--TTA-TTGTATGT--TATAG---------ACTT---------G--ATATTTA-AA----TGTGTGCTGGTGAGGC-C-AAA-A---
gi|2 : GT----G-A-----GG--C---CAAAA-AC--TCCATATGAGAGGGCC--AAA-A-ATCCATATCAATTATAGGCT-GTG-TTGCAGTATTT-TCCATG-AAT-AATGTTAA-GCGGTTTA-TCAG---T--AAA----A----C--A-CCTCAAACCAGTCAATTCGAATGTATTCT--CGAGCA--AA--CA-ATGACAACAATA-GGG-CAGCGA------GGTTAAGATGACAGATG----CATCGactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|2 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctgAATTCACCTATGATGGTGTAAATAG-ATTTAA-TTTTGAACCTTAA--A--GATACCCCGCTTTGTAA--TT-TTTCTAGTCGACTCCAATATGTCATTACGCGTATAAACG--------------CCAAGGGAA-T-ACTGTACGTTATCAGTTTGAGGGA-AC-TCAG-TGGTGGTGTTCAAAGTAAGATACGTT-AATAAAatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|21 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagTATA-TACATT-T-AT---TACATGTGTTGTCACTATATAT--AGTAACGAAATAAGCTTGTCTTGTT-----TGAAACAGC-TTAGCCTACTC---------GGTTTAATAA-AATTCgagcaacaacggagaagaatactgt
gi|22 : ttataaatagaactaaATATGCGTGGGCCTAAAA-A-ATCAATATTAATTAAAGAAT-GTG-TTACATTGTTT------GCTTTTAATCTTTG-GGGAATTA-TCAG---T--AAA-A-AT----T--A-CCACAAGCCAGCCATTTTG--C
gi|23 : ATATCAAG-GAATTCTATAGAGACCATACAAGTCCTTGTCAA--CATGAACAATAAGAAA-----GAAATGAGAAAT-AGAaa
gi|24 : gcgcgcacgcacactctgaaaatatagtca-TTAT---AACATATGCT---ACTCTATATATAGTAACAAAATAAGCTTGTTTA-TT---TATGAT-TAGCGTTAG
gi|25 : tatgcaatgttaTAACTGTACGTTATCAGTTTGAAGGA-AC-TCGG-TGG-GGTATTCAACGTAAAA
gi|26 : aATATCAAG-GAATTATATAGAG---ATATAAGTCCTTG--gtcgttagaaaaaa
gi|27 : ttaaaagtataatttATAAACAAAAGAGCGATAGCTCCAAGTGAAATAACTGTAt
gi|28 : cctTAT---TACGTGTGTT---AC--TATATAAAGTAACAAAATAA
gi|3 : ACGTCATAATACATT-TTAG---TTCATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGCTTT-TTGTGTATGATATAGCTTTAGTCTACAG---------GTCATATTAA-AAGTCGCGTGTGACGACAGGAC-C-AAACA---T-CCATGTGCGAGGGC----CAGA-AATCCATATGT----G-A-----GGG-C---CAGAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTCT-GTG-CTCTAGTGTTT-T--A-G-TTTAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A-AGACAAACCCGTCTATTCC--GGCACTCA--CGCGCC--CTTCTA-ACGACGACAAC--CGT-TAGCAAC-----AGCCGGA-TGGCAAAAGGAGTCTTCGGCTCTCTGTTTTACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGACTCGAAG---TAATAATTGGGCAAACAAAGTG-----CCCA-TGTACATTGTGCAATTTGTGGAAAGCATCAAGAGAATTATACGGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAAAGCAAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTT-TGTCAA--ATACCATTGGAAGAAC---TGAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCT--TGGTGCAAATAC-ATTTAG-TTTTAATCGTT----A--A--ATCCCGCTTTGTAAACTGATTTCTAATGGACCCCACCTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTACCTGTTTTAGGGGTACGCCAG-AGA-CATAGAC--------ACAAATAAAGTATGTGTA-CACATAATT---T-AG--AAGCA-TGT--GTAATAAAGAAGTTGAT-TAA
gi|4 : ACATGTGTG---ACTCTATATAGA--AACAAAATAAGCTTGTTAT-TT-TATAT--TATAGCTTTAGCCTACGG---------GACATATTAA-ACGCCACGTGTGACCGC---------------------------AGGCC----CAAA-AACTCATATGC----G-A-----CGG-C-----AAA-A---TC-----------------------TCTATA--AATTGTAGGCA-GAG-TCACAGTATTT-TCCA-A-T---AATATTCA-GCAAATTA-TTCT---T--AAG-A-AA----T--A--ATC--TCTAAT-AATTCG--TT--TTTA--TTCGCG-------A-GCAACAACAG---AG--CAGCGAC-----GATTAAAATGGCA----GACCCATCG-CTTTTTGAACAACACACTCAGGGA-TTAAGACCA--TG-TG----TTACTGAAGAGAAAGCTTATTG-TTGTTT--TTGATATG-----CGCACTT-ACACCTTACAATGT-TTAAAGATATGAATAAAAT
gi|4 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaACTTACGCCA--TAGTGTAAATAAGATTAAA-TTTTAGACTTTAA--A--AT-ACCCCGCTTTCT-AACTTATTTCTgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|5 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgccacgtgtgaccgcaggcccaaaaactcatatgcgacggcaaaatctctataaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtTAT---TACATGTGTT---ACTATATA--AAGTAACAAAATAAGCTTGTTTT-TT-TATATGATATAACTTTAGTCAACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC---------------------------AGGGC----CAAA-AATCAATATGT----G-A-----GGG-C---CAGAA-T---TCCATGTGTGAGGGCC--AAA-A-TTCCATATCAATTTCCGTCT-GTG-CTCTAGTGTTT-T--C-G-TATAAATGTTTA-GCAAATTA-TGAA---T--GGA-A-TA----T--A-TACCAAACCCGTCTATTCG--CGCAATCA--CACGCA--C-TTCATACGACGACAAC--CGT-TAGCAAC-----AGTTAGA-TGGCAAAAGGAGGCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAT-ACCAACCGGTA----GCACAGAGTAGAAG---TAATGATTGTGCCAACGAAGTG-----CCCACGG-ACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGTATGAAGAATA--AAA-----AAAATGCAAAAC-AAAATCCGTCGTGAAAATGTTTTTGTGCGACTGGCTTGGAGAA---GTTACACCAACTA-A-CGCTGGAAGAAC---TAAATATGCAGTTAGCCTTTTTTTTCTCTCG-CAATTTACTCCT--TGGTGCAAGTAT-ATTTAG-TTTTTATCGTTGAATA--A--ATCCCGCTTTGTAAACTGATTTCTTATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTATCTGTTTTTGGGGTAC-
gi|6 : ACCTTACAGTGTACT-TTATA--TA-ATATATT---ACTATATATAG--TAACAAAATAATCTTGTTTT-TTGCATA--ATATAGTTTTAGCATACCG---------GGCATATTAA-ATGTCACGTTTCACGACAGGGC-C-AAA-AA--T-CCATATGCGAGAGC----AAAA-AATCCATATGT----G-A-----GGG-C---CAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTTT-GTG-TTATAGTGTTT-T--A-G-TATAGATGTTTA-GCGAATTA-TGAA---T--TAA-A-TA----T--A-TGCCAAACCCGTCTATTCG--TGCATTCA--CACATG--CATCCG-ACGGCGACAAC--TGT-CATCAAC-----AGTTAATATGGCAGAAGGAGTCTTCGCCTTTCTGTCTAACAGGCTTTTGGA-TTAAGACCAACTGATA----GCACAGAATTGAAG---TAATAAGTTTACATACAAAGTG-----ACCACTG-ACACTGTGCAGTTTGT-GAAGACATGAAGAg
gi|6 : gtatagttaataagatacgtggctgccaaacaagcaatgAGTTTGTG--AAGACATGAAGAATA--AAAATACCAAAAGGTAAAACAAAAATACGACATGAataaaaataccaaaaggtaaaacaaaaatacgacatga
gi|7 : gtatagttaataagatacgtggctgccaaacaagcaatgaccttacagtgtactttatataatatattactatatatagtaacaaaataatcttgttttttgcataatatagttttagcataccgggcatattaaatgtcacgtttcacgacagggccaaaaatccatatgcgagagcaaaaaatccatatgtgagggccaaaaatccatatgtgagggccaaaaatccatattaatttcagtttgtgttatagtgttttagtatagatgtttagcgaattatgaattaaatatatgccaaacccgtctattcgtgcattcacacatgcatccgacggcgacaactgtcatcaacagttaatatggcagaaggagtcttcgcctttctgtctaacaggcttttggattaagaccaactgatagcacagaattgaagtaataagtttacatacaaagtgaccactgacactgtgcACACATTGTTAT---TACATGTGTT---ACTATATATAT--TAAAAAAGTAAACTTGTTTT-TTGTATA--ATATAGCTTTAGTCTACAG---------GGCATATTAA-AAGTCGCGTGTGAAGACAGGAC-CAAAA-A---A-CCATATGTGAGGGC----CAAA-AATCCATAT
gi|7 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatAGGGCATATTAAA-AGTC-GCGTGT----G-AAGACAGGA-C---CAAAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTTT-GTG-CTCTAGTGTTT-T--A-G-TATAAATGTTTA-GTCAATTA-TGAA---T--GGA-A-TA----T--A-TGCAAAACCTGATTATTTG--CGCACTCA--CAGGTG--CTTCCA-ACTACAACG-C--TAT-TAGCAAC-----ATTTAGA-TGGCAAAAGGAGTCATCGTCTCTCTGTCTAACACGCTTT-GGAG-------CAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACAAAGTG-----CACGTGG-ACACTGTGCAATTTATGGAAGAAATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAcaatttccgtttgtgctctagtgttttagtataaatgtttagtcaattatgaatggaatatatgcaaaacctgattatttgcgcactcacaggtgcttccaactacaacgctattagcaacatttagatggcaaaaggagtcatcgtctctctgtctaacacgctttggagcaactgatagcacagaatagaagtaatgattgtgcaaacaaagtgcacgtggacactgtgcaatttatggaagaaatcaagagaattatatagagtctatataagtccttgaaggcatgaagaataaaaaa
gi|8 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatacacattgttattacatgtgttactatatatattaaaaaagtaaacttgttttttgtataatatagctttagtctacAATAAAAAAACAA---CATTTT-TT---CATCATTT---CTTAGCCTACAGTAGCTACTTGGCATATTAT-AATTCATGTGTGACAGCGGGCC-A-AAA-A---C-CCATAT--------------AA-CATTCA---------G-A-----GGG-A---CAAAA-A---TTGATATTTGAGGGCC--AAA-A-ATCCAAATTAATTATAAGAT-GTG-TTACATTATTT------G-C-------TTTA-AC-AATTA-TCAG---TTAAAA-A-TA----T--AACTGCAAACCAATCAATTCA--TATGTATA--CATGAG--CATCCA----ACAACAAC--AGTGCAGCAAC-----TCTTAAACTAACA----GATTCATTG-CTTTCTGAACAACAAAC-TCAGGATTTTA-G--AACATATATCAGGTACAGAAGAGAAG-----ATG-TTGTT--AATGATTTGATTATTCCAATG-ACATCATACAATTT-TTAAAGACA
gi|9 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaatCTACTG---------GGTATAATAA-AAGTCATGTGTGATGGCAG----------A---T-CCATATG------------------TCCATATAC----A-A-----GGGGC---CAAAA-T---TCCATATGCAAGGGAC--AAA-A-CTCGATATTAATTTAAGGCT-GTG-TAACAGTATTT-T----C-CATTACTATTGA-GCAAATTA-TTAG---T--AAA-A-AAAAAGT--A-CTACAAACCAGTTAACT----CGTATTTACTCTCGCG--CAACCA-ACAACAA-GAG--AG--CAGCGAC-----GGATAAAATGGCAGACG----TATCG-CTTTCTG---AACA-G----------TAA-ACT-----------------GAATAGAA-----AGTTGTTGTTTCAAT---ATG-----CGCACTG-ACACCATGCGATTT-T-GAGGACGTGAATAAAACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGTTGTATTTGTATTTCAATTCTAGTTTTTGTTCTTATATCTTAGAGGAAATATAGGTATGTTGACAACCAGAGTCCAGGATATGTATGCTTGAGTTTGATTGATATTAGCGATATGATACATGTCAACATGTTGACCGATTAATGTAAACACACAATGAGAAAAAATATTATACTTCCTAAACGAAAACTCATAAATTAATCTGGTCCATGGAGTAAATGAAAATACGAATATACCCGTTTGAATTAATTAATAAGAACGTATTCCATAATGGCGTAAATGTGTTTAACGTTGCGCCTTTATAATATCCCGCT
Unaligned ( gi|20 ): ATACATTTATCGTTTTTTTCACAGCTTTTTAAAAGAGAAAATATTATGGACAGATTCCTTGATATGTAATCGCCTGACTATGTAGAGATTTTAGCGACATGAGATACTCTGCCATCATTTTGACTGATATTTGTAA
Alignments
lowQualScore : 111 111 1111111 111111111 4444444444444444444444444444 222222222222 1111111 11111111 1 11111 111 1 22222 4444444444 222 22 111111111 222 1 1 1111111 11 1 11111 11 111 2222 22 1
lowQualScore : 1 33 5 111 555 444 1 0 2 5555555 2 1 000000000 2 8888888888888888888888888888 2 77777 2 2 555 33 2 444 2 666 1 3 55 4 2 22 1 2 2 333333333333 0 5 4 2 1 444 33 2 55 9999999 66666 3 0 2 888 33 1 0 33 1 2 2222222 888888 3 11111111 1 22 3 4 9 8 1 0 9999 777 3 777 0 11111 0 4 0 111 22 1 1 1 1 77 77 99 33333 1 1 0 8 9 3 8888888888 3 333 44 1 0 777777777 333 1 3 0 1 66 5 1 1 0 77 3333333 1 5 1 2 0 22 0 3 1 1 1 8 5 00 6 1 999 1 0 222 1 1 0 0 88888 33 000 0000 1 00 3
lowQualScore : . .. . ... ... ... . . . ....... . . ......... . ............................ . ..... . . ... .. . ... . ... . . .. . . .. . . . ............ . . . . . ... .. . .. ....... ..... . . . ... .. . . .. . . ....... ...... . ........ . .. . . . . . . .... ... . ... . ..... . . . ... .. . . . . .. .. .. ..... . . . . . . .......... . ... .. . . ......... ... . . . . .. . . . . .. ....... . . . . . .. . . . . . . . .. . . ... . . ... . . . . ..... .. ... .... . .. .
lowQualScore : 0 33 0 000 444 000 2 1 9 3333333 1 0 777777777 7 6666666666666666666666666666 7 00000 2 2 000 99 5 444 5 999 9 9 66 7 4 55 0 4 4 111111111111 4 0 4 5 0 444 44 5 55 1111111 11111 2 8 4 000 77 9 9 77 1 9 5555555 444444 2 55555555 9 33 9 6 4 9 1 8 4444 888 6 111 9 11111 1 4 7 666 11 7 5 7 4 99 77 22 33333 0 4 8 0 2 5 0000000000 7 333 00 0 7 333333333 333 0 3 0 0 77 7 0 0 1 99 4444444 4 0 3 5 3 88 8 7 4 0 0 9 7 33 7 7 222 5 6 666 0 0 0 2 55555 88 222 0000 0 00 3
consensus : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGCGGGGC--AAA-A---TCCATATG---CGA-GGGC----CAAA-A-ATCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTG-TGTT-ACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCNTGGTGCAAATAN-ATTTAG-TTTTAANCNTTAA--A--A-A--CCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GGTATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
Reference ( family-652 ) : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGCGGGGC-CAAA-A---TCCATATG---CGA-GGGC----CAAA-A-ATCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTG-TGTT-ACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCAGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCNTGGTGCAAATAN-ATTTAG-TTTTAANCNTTAA--A--A-A--CCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GGTATNCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
gi|1 : ATGTGTT---ACTATATATAG--TAATAAAATAAGCTTGTTTT-TAGCAT--GATATAGTTTTAGCCTACAG---------GGCATATCAA-ATGTCATGTGTCACGGCAGGGTAAAAA-A---TCCATATG---TGA-GGGC----CAAA-A-ATCCATAT
gi|1 : A-GGGCATATCAAA-T-GTC-ATGTGTCACGGCAGGG-T---AAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTCTA-TGTT-ATAGTGTTT-T--A-G-TATAAATGATTA-GCAAATTA-TGAA---T--TAA-A-TA----T--A--TGTCAACCCCGTCTATTCG--TGCATTCA--CACGTG--CATCCA-GCAGCGACAAC--TGT-AAGCAAC-----AGTTAAAATGGCAGAAAGAGTCATCGC--TTCTGTCTAGTAGGCTTTTGGATTTAG-AACAACTAATA----GCACAGACTCGAAG---TTACAATTGTACGAATGAAGTG-----CCCACTG-ACACTGTGCAATTTGTGGAAGACATGAAGA-------ATAAAA---ATA-----CC-----AA---ATGCAAAACA--AAAT----ATGATGTGAA---AAAGT----TGTGCGACTGGTTT--------------GGAGAAGACGTTG-GACGATTACACC------ATATCCCATCAATATGCATTTAGGAAGGTTTTT-TCTTGCAAATtaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|1 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacAATTCACTCCTTGGTGCAGGTAA-ATTTAG-TTTTAATCTTTAA--ATAA-A--CCCCGCTTTGTAAACTGATTTCTTATGCACACTGTGTCGTCATGACGTGCATAAACAAAAGAGTGATAACTCCAAGGGAAGTCACTGTATGCTATTTGTTTGAGGGGCAC-ACAA-TGG-GGTTTATAAAGTGTGATAAATTATATAGATATA-TAAATAAAT---T-AA--AATAA-AAT--G-AAAAAAAAAG-TAAT-TAAaagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|10 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagatTATAGTAACAAAATAAGCTCGTTTT-TTGTAT--GATATAGCTTTAGTCTACAG---------GGCATATTAA-AGGTCTCGTATGTCGA----------------------------GA-GGGC----CAAA-A-ATCCATAAA---CG--AGAG-C---CAGAC-A---TCCGTATGTTAGGGCC--AAA-A-ATCCATATTAATGTCCGTCTG-TGCT-CTAGTGGTT-T--A-G-TATAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--TGACAAACCCGTCTATTCG--CGCACTCA--GACGCG--CTTCTA-ACGACGACAAC--CGT-AAGCATT-----AGTT-AGATAGCAAAAGGTGTCATCGCATCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAAAAG---TAATGATTGTGCAAACGAAGTG-----CCCGCTG-GCACTGTGCAATTTGGCGAAGACATCAAtaaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|11 : -AAATTTACTCCACGGTGTAAATAA-ATTTAGAATTGGACCTTTAA--A--ATA--CCCCGGGGTGT-AACTTATATCTAATCAACTC
gi|11 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaTGTAC-CTGTCAGTTTGTGGGGCAC-TCAG-TGG-GG-ATATGATATCTAACGAA--AAATGCTTTTA-TAAATAACT---TGAA--AATAATAATTAC-ATAAAAGAA--TAATGTAAtactatggcgtgtacctgtcagtttgtggggcactcagtggggatatgatatctaacgaaaaatgcttttataaataacttgaaaataataattacataaaagaataatgtaaaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaaaatttactccacggtgtaaataaatttagaattggacctttaaaataccccggggtgtaacttatatctaatcaactctactatggcgATGGTATAGCCTTTGCCAACTG---------GGCGTATTAC-AATTCACGTGTGAT-----GGC-CAAA-T---TATATATG---CCA-GTGC----CAAA-A-TTCCaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : gcgttta-A-ATTCACGTG---TG--ATGG-C---CAAATTA---T--ATATGCCAGTGCC--AAA-A-TTCCTAATTTACCAAAGCCTG-TATT-ACAATATTTGT--G-A-TTTTACTGTTCG-GCAAATTA-TCAG---T--AAATA-TA----T--AA-CTTCAAACCAGTCAGTTAG--TATATTTG--CGAGAG--AATCCA-ACGACAACAAC--AAT---GCGACTACTGGGTTAAAATGACAAATG----CATCA-CTTTCTGtaatttaccaaagcctgtattacaatatttgtgattttactgttcggcaaattatcagtaaatatataacttcaaaccagtcagttagtatatttgcgagagaatccaacgacaacaacaatgcgactactgggttaaaatgacaaatgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|14 : gcgtttaatggtatagcctttgccaactgggcgtattacAAA-A---TTCACGTGAGACGACGGGA----CAAA-ATATC-ACAAA---CG--AGGT-C---AAATG-A---TCCATATG-AATTGCC--AAACA-ATCCTTATTGATTAAAGTCTG-TGTT-ACAGT--------------------TTTACGAGAATAA-TTAG---T--AAA-A-CAAA--T--A--GCCCAAACCTACCAATTCG--TACATTTA--CACGTG--CATCCA-ATGACGACAACATTGT--AGCGAA-----GGTTAAAATGACA----GATTAATCGCTCCCCTGaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|15 : ACTTTTTAATATACT-CTCTCTTTATATGTATT----TTATATA----GTAATAGAATAAACTTGTTTT-TTGTAT--------------GTCTACAG---------GGTATATCAA-GAGTCACGTGTGACGGC-GAGC-CAAA-A---TCCATATG---CGA-CGAC----C-AA-A-ATCCATATagcaacagatctacggattacactatttatcactcagagaacatgtatttaacgcaagttgccatacatttgacatcatatatttaa
gi|15 : ataatcctcataaacaccttgactagaattataatggcataa----CAAG-A-GTC-ACGTG---TG--ACGG-CGAGCCAAA-A---TCCATATGCGACGACC--AAA-A--TCCATATTAATTATAGGCTG-TGTT-ACAGTGTTT-T--A-C-TA------TTTA-ACTAATTA-TCAA---T--AAA-A--A----TA-A--CCGCAAACCAGTCAATT----CGTATGTA--AGTGCGAACATCCA-ACAACAAtaattataggctgtgttacagtgttttactatttaactaattatcaataaaaataaccgcaaaccagtcaattcgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|16 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctctttatatgtattttatatagtaatagaataaacttgttttttgtatgtctacagggtatat-TTAT---TACATGTATT---ACTATATATAG-----CAAAA---GCTT---TT-TT---TATGATATAGCTTTTGCCTACTT---------GACATATTAA-AGTTCACATGTAACAGTAGG-----AA-ACACTCCATATG---TGA-GGG-----CAAT-A-ATCCATATtccggtaaaaacaa
gi|16 : ttctttaatgtgctgaaacatacagacaaAA-A-GTTCACATG---TA--ACAG-T---AGGAA-ACACTCCATATGTGAGGGC---AAT-A-ATCCATATTAATTATAGGCTG-TGTT-ACAGTG-TT-T--A-C-TATTAGGGCTTA-GC-AATCAGTGAAACCT--AAA-ATTA----TTAA--CGT-AAACCAGTTAATTAG--TATATCGA--CAAGAG--CATCCA-ATGACAACAAC--AGTGCAGCAAtaattataggctgtgttacagtgtttactattagggcttagcaatcagtgaaacctaaaattattaacgtaaaccagttaattagtatatcgacaagagcatccaatgacaacaacagtgcagcaaa
gi|17 : ttctttaatgtgctgaaacatacagacaattattacatgtattactatatatagcaaaagctttttttatgatatagcttttgcctacttgacatattTATAA-ACATT-GCAA----ACATGTATT---ACTA-ATATAAAGTAA--AAATAA-----TTAT-TTGTGTGTGTTATAACCTTAGTCTACTA---------GGCATATTAATAAGTCACGTGCAACAGCGGGAT-AAAC-G---TCTATATG---CGT-GGG------AAACA-ATACACATa
gi|17 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgaGGG-A---TAAAC-G---TCTATATGCGTGGG----AAACA-ATACACATCAATTTCAGGCTGGTATTTAAAGAATAT-T--A----ATAAAcaatttcaggctggtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaacatgtattactaatataaagtaaaaataattatttgtgtgtgttataaccttagtctactaggcatattaataagtcacgtgcaacagcTTTACGCCATAGTATATATAG-ATTTAA-CTTTAAGCCTTAA--A--A-G--C-----------AACTTACTTCCAACCAACTCCaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : AACTCCAAGGGAAATAACTATCAGCTCTCAGTTTGTGGGGCAC-TCAATTAG-AGTATTCGAAGTAAAATTCGTTAAAAAGAACTAGCAAATAACTAACT-AATCAAT-A-AAT--G-ATAATAGAAaagggaaataactatcagctctcagtttgtggggcactcaattagagtattcgaagtaaaattcgttaaaaagaactagcaaataactaactaatcaataaatgataatagaacttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|19 : tttacgccatagtatatatagatttaactttaagccttaaaagcaacttacttccaaccG---CG--AGGA-C---CAAAA-A---TC-ATATGCGTGGGCCT-AAA-ACATCCATATTAACTATAGAATG-TGTT-ACAGTGTTT-T--A-A-T-------TTTAGGCGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTGAAAACAT--A--CGCAGG--CATCcttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|2 : ACATGTGTT---TCTATTTATAG--TAACGGAATAAGCTT--TTA-TTGTATGT--TATAG---------ACTT---------G--ATATTTA-AA----TGTGTGCTGGTGAGGC-CAAA-A---
gi|2 : GG-C---CAAAA-AC--TCCATATGAGAGGGCC--AAA-A-ATCCATATCAATTATAGGCTG-TGTT-GCAGTATTT-TCCATG-AAT-AATGTTAA-GCGGTTTA-TCAG---T--AAA----A----C--A--CCTCAAACCAGTCAATTCGAATGTATTCT--CGAGCA--AA--CA-ATGACAACAATA-GGG-CAGCGA------GGTTAAGATGACAGATG----CATCGactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|2 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaTGGTGTAAATAG-ATTTAA-TTTTGAACCTTAA--A--G-ATACCCCGCTTTGTAA--TT-TTTCTAGTCGACTCCAATATGTCATTACGCGTATAAACG--------------CCAAGGGAA-T-ACTGTACGTTATCAGTTTGAGGGA-AC-TCAG-TGGTGGTGTTCAAAGTAAGATACGTT-AATAAAatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|21 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgaTATA-TACATT-T-AT---TACATGTGTTGTCACTATATAT--AGTAACGAAATAAGCTTGTCTTGTT-----TGAAACAGC-TTAGCCTACTC---------GGTTTAATAA-AATTCgagcaacaacggagaagaatactgt
gi|22 : ttataaatagaactaaATATGCGTGGGCCTAAAA-A-ATCAATATTAATTAAAGAATG-TGTT-ACATTGTTT------GCTTTTAATCTTTG-GGGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTG--C
gi|23 : ATATCAAG-GAATTCTATAGAGACCATACAAGTCCTTGTCAA--CATGAACAATAAGAAA-----GAAATGAGAAAT-AGAaa
gi|24 : gcgcgcacgcacactctgaaaatatagtca-TTAT---AACATATGCT---ACTCTATATATAGTAACAAAATAAGCTTGTTTA-TT---TATGAT-TAGCGTTAG
gi|25 : tatgcaatgttaTAACTGTACGTTATCAGTTTGAAGGA-AC-TCGG-TGG-GGTATTCAACGTAAAA
gi|26 : aATATCAAG-GAATTATATAGAG---ATATAAGTCCTTG--gtcgttagaaaaaa
gi|27 : ttaaaagtataatttATAAACAAAAGAGCGATAGCTCCAAGTGAAATAACTGTAt
gi|28 : cctTAT---TACGTGTGTT---AC--TATATAAAGTAACAAAATAA
gi|3 : ACGTCATAATACATT-TTAG---TTCATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGCTTT-TTGTGTATGATATAGCTTTAGTCTACAG---------GTCATATTAA-AAGTCGCGTGTGACGACAGGAC-CAAACA---TCCATGTG---CGA-GGGC----CAGA-A-ATCCATATG---TG--AGGG-C---CAGAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTCTG-TGCT-CTAGTGTTT-T--A-G-TTTAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--AGACAAACCCGTCTATTCC--GGCACTCA--CGCGCC--CTTCTA-ACGACGACAAC--CGT-TAGCAAC-----AGCC-GGATGGCAAAAGGAGTCTTCGGCTCTCTGTTTTACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGACTCGAAG---TAATAATTGGGCAAACAAAGTG-----CCCA-TGTACATTGTGCAATTTGTGGAAAGCATCAAGAGAATTATACGGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAAAGCAAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTT-TGTCAA--ATACCATTGGAAGAAC---TGAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCTTGGTGCAAATAC-ATTTAG-TTTTAATCGTT----A--A-A--TCCCGCTTTGTAAACTGATTTCTAATGGACCCCACCTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTACCTGTTTTAGGGGTACGCCA---GA-GACAT----AG--ACACAAATAAAGTATGTGTA-CACATAATT---T-AG--AAGCA-TGT--GTAATAAAGAAGTTGAT-TAA
gi|4 : ACATGTGTG---ACTCTATATAGA--AACAAAATAAGCTTGTTAT-TT-TATAT--TATAGCTTTAGCCTACGG---------GACATATTAA-ACGCCACGTGTGACCGC----------------------------A-GGCC----CAAA-A-ACTCATATG---CG--ACGG-C-----AAA-A---TC-----------------------TCTATA--AATTGTAGGCAG-AGTC-ACAGTATTT-TCCA-A-T---AATATTCA-GCAAATTA-TTCT---T--AAG-A-AA----T--AATCTCTAA------TAATTCG--TT--TTTA--TTCGCG-------A-GCAACAACAG---AG--CAGCGAC-----GATTAAAATGGCA----GACCCATCG-CTTTTTGAACAACACACTCAGGGA-TTAAGACCA--TG-TG----TTACTGAAGAGAAAGCTTATTG-TTGTTT--TTGATATG-----CGCACTT-ACACCTTACAATGT-TTAAAGATATGAATAAAAT
gi|4 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaACTTACGCCATAGTGTAAATAAGATTAAA-TTTTAGACTTTAA--A--ATA--CCCCGCTTTCTAA-CTTATTTCTgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|5 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgccacgtgtgaccgcaggcccaaaaactcatatgcgacggcaaaatctctataaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtTAT---TACATGTGTT---ACTATATA--AAGTAACAAAATAAGCTTGTTTT-TT-TATATGATATAACTTTAGTCAACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC----------------------------A-GGGC----CAAA-A-ATCAATATG---TG--AGGG-C---CAGAA-T---TCCATGTGTGAGGGCC--AAA-A-TTCCATATCAATTTCCGTCTG-TGCT-CTAGTGTTT-T--C-G-TATAAATGTTTA-GCAAATTA-TGAA---T--GGA-A-TA----T--A--TACCAAACCCGTCTATTCG--CGCAATCA--CACGCA--C-TTCATACGACGACAAC--CGT-TAGCAAC-----AGTTAGA-TGGCAAAAGGAGGCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAT-ACCAACCGGTA----GCACAGAGTAGAAG---TAATGATTGTGCCAACGAAGTG-----CCCACGG-ACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGTATGAAGAATA--AAA-----AAAATGCAAAAC-AAAATCCGTCGTGAAAATGTTTTTGTGCGACTGGCTTGGAGAA---GTTACACCAACTA-A-CGCTGGAAGAAC---TAAATATGCAGTTAGCCTTTTTTTTCTCTCG-CAATTTACTCCTTGGTGCAAGTAT-ATTTAG-TTTTTATCGTTGAATA--A-A--TCCCGCTTTGTAAACTGATTTCTTATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTATCTGTTTTTGGGGTAC-
gi|6 : ACCTTACAGTGTACT-TTATA--TA-ATATATT---ACTATATATAG--TAACAAAATAATCTTGTTTT-TTGCATA--ATATAGTTTTAGCATACCG---------GGCATATTAA-ATGTCACGTTTCACGACAGGGC-CAAA-AA--TCCATATG---CGA-GAGC----AAAA-A-ATCCATATG---TG--AGGG-C---CAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTTTG-TGTT-ATAGTGTTT-T--A-G-TATAGATGTTTA-GCGAATTA-TGAA---T--TAA-A-TA----T--A--TGCCAAACCCGTCTATTCG--TGCATTCA--CACATG--CATCCG-ACGGCGACAAC--TGT-CATCAAC-----AGTTAATATGGCAGAAGGAGTCTTCGCCTTTCTGTCTAACAGGCTTTTGGA-TTAAGACCAACTGATA----GCACAGAATTGAAG---TAATAAGTTTACATACAAAGTG-----ACCACTG-ACACTGTGCAGTTTGT-GAAGACATGAAGAg
gi|6 : gtatagttaataagatacgtggctgccaaacaagcaatgAGTTTGTG--AAGACATGAAGAATA--AAAATACCAAAAGGTAAAACAAAAATACGACATGAataaaaataccaaaaggtaaaacaaaaatacgacatga
gi|7 : gtatagttaataagatacgtggctgccaaacaagcaatgaccttacagtgtactttatataatatattactatatatagtaacaaaataatcttgttttttgcataatatagttttagcataccgggcatattaaatgtcacgtttcacgacagggccaaaaatccatatgcgagagcaaaaaatccatatgtgagggccaaaaatccatatgtgagggccaaaaatccatattaatttcagtttgtgttatagtgttttagtatagatgtttagcgaattatgaattaaatatatgccaaacccgtctattcgtgcattcacacatgcatccgacggcgacaactgtcatcaacagttaatatggcagaaggagtcttcgcctttctgtctaacaggcttttggattaagaccaactgatagcacagaattgaagtaataagtttacatacaaagtgaccactgacactgtgcACACATTGTTAT---TACATGTGTT---ACTATATATAT--TAAAAAAGTAAACTTGTTTT-TTGTATA--ATATAGCTTTAGTCTACAG---------GGCATATTAA-AAGTCGCGTGTGAAGAC----------------------------A-GGAC----CAAA-A-AACCATATG---TG--AGGG-C---CAA---------------------------A-A-ATCCATATCAATTTCCGTTTG-TGCT-CTAGTGTTT-T--A-G-TATAAATGTTTA-GTCAATTA-TGAA---T--GGA-A-TA----T--A--TGCAAAACCTGATTATTTG--CGCACTCA--CAGGTG--CTTCCA-ACTACAAC-GC--TAT-TAGCAAC-----ATTT-AGATGGCAAAAGGAGTCATCGTCTCTCTGTCTAACACGC-TTTGGAG-------CAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACAAAGTG-----CACGTGG-ACACTGTGCAATTTATGGAAGAAATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AA
gi|8 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatAATAAAAAAACAA---CATTTT-TT---CATCATTT---CTTAGCCTACAGTAGCTACTTGGCATATTAT-AATTCATGTGTGACAGCGGGCC-AAAA-A---CCCATAT------------------AA-C-ATTCA--------G--AGGG-A---CAAAA-A---TTGATATTTGAGGGCC--AAA-A-ATCCAAATTAATTATAAGATG-TGTT-ACATTATTT------G-C-------TTTA-AC-AATTA-TCAG---TTAAAA-A-TA----TA-A--CTGCAAACCAATCAATTCA--TATGTATA--CATGAG--CATCCA----ACAACAAC--AGTGCAGCAAC-----TCTTAAACTAACA----GATTCATTG-CTTTCTGAACAACAAAC-TCAGGATTTTA-G--AACATATATCAGGTACAGAAGAGAAG-----ATG-TTGTT--AATGATTTGATTATTCCAATG-ACATCATACAATTT-TTAAAGACA
gi|9 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaatCTACTG---------GGTATAATAA-AAGTCATGTGTGATGGCAG---------A---TCCATATG-----------------------TCCATATA---CA--AGGGGC---CAAAA-T---TCCATATGCAAGGGAC--AAA-A-CTCGATATTAATTTAAGGCTG-TGTA-ACAGTATTT-T----C-CATTACTATTGA-GCAAATTA-TTAG---T--AAA-A-AAAAAGT--A--CTACAAACCAGTTAACT----CGTATTTACTCTCGCG--CAACCA-ACAACAA-GAG--AG--CAGCGAC-----GGATAAAATGGCAGACG----TATCG-CTTTCTG---AACA-G----------TAA-ACT-----------------GAATAGAA-----AGTTGTTGTTTCAAT---ATG-----CGCACTG-ACACCATGCGATTT-T-GAGGACGTGAATAAAACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGTTGTATTTGTATTTCAATTCTAGTTTTTGTTCTTATATCTTAGAGGAAATATAGGTATGTTGACAACCAGAGTCCAGGATATGTATGCTTGAGTTTGATTGATATTAGCGATATGATACATGTCAACATGTTGACCGATTAATGTAAACACACAATGAGAAAAAATATTATACTTCCTAAACGAAAACTCATAAATTAATCTGGTCCATGGAGTAAATGAAAATACGAATATACCCGTTTGAATTAATTAATAAGAACGTATTCCATAATGGCGTAAATGTGTTTAACGTTGCGCCTTTATAATATCCCGCT
Unaligned ( gi|20 ): ATACATTTATCGTTTTTTTCACAGCTTTTTAAAAGAGAAAATATTATGGACAGATTCCTTGATATGTAATCGCCTGACTATGTAGAGATTTTAGCGACATGAGATACTCTGCCATCATTTTGACTGATATTTGTAA
Alignments
lowQualScore : 111 111 1111111 111111111 666666666666666666666666 222222222222 1111111 11111111 1 11111 111 1 22222 4444444444 222 22 111111111 222 1 1 1111111111 11 111 1 11111 11 111 2222 22 1
lowQualScore : 1 33 5 111 555 444 1 0 2 5555555 2 1 000000000 2 0 222222222222222222222222 55555 2 2 8888 33 2 444 2 666 4 2 55 4 2 22 1 2 2 333333333333 0 5 4 2 1 444 33 2 55 8888 55 88888 1 0 2 888 33 1 0 33 1 2 2222222 888888 0 1 11111111 1 22 3 4 9 8 1 0 9999 777 3 777 0 11111 0 4 0 111 22 1 1 1 1 77 77 99 33333 1 1 0 8 9 3 8888888888 3 333 44 1 0 777777777 333 1 3 0 1 77 6 0 1 1 1 6666666666 7 3 1 5 2 22 0 3 1 1 1 8 5 00 6 6 444 1 0 222 1 1 0 0 88888 33 000 0000 1 00 3
lowQualScore : . .. . ... ... ... . . . ....... . . ......... . . ........................ ..... . . .... .. . ... . ... . . .. . . .. . . . ............ . . . . . ... .. . .. .... .. ..... . . . ... .. . . .. . . ....... ...... . . ........ . .. . . . . . . .... ... . ... . ..... . . . ... .. . . . . .. .. .. ..... . . . . . . .......... . ... .. . . ......... ... . . . . .. . . . . . .......... . . . . . .. . . . . . . . .. . . ... . . ... . . . . ..... .. ... .... . .. .
lowQualScore : 0 33 0 000 444 000 2 1 9 3333333 1 0 777777777 5 9 444444444444444444444444 99999 1 1 8888 77 4 111 4 555 2 5 66 7 4 55 0 4 4 111111111111 4 0 4 5 0 444 44 5 55 8888 99 66666 9 8 4 000 77 9 9 77 1 9 5555555 444444 4 2 55555555 9 33 9 6 4 9 1 8 4444 888 6 111 9 11111 1 4 7 666 11 7 5 7 4 99 77 22 33333 0 4 8 0 2 5 0000000000 7 333 00 0 7 333333333 333 0 3 0 0 77 7 3 0 0 7 3333333333 3 0 4 0 2 88 8 7 4 0 0 9 7 33 7 7 888 5 6 666 0 0 0 2 55555 88 222 0000 0 00 3
consensus : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGCGGG-C--AAA-A-T-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTG-TGTT-ACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCTTGGTGCAAATAN-ATTTAG-TTTTAANCTTTAA--A--A-A--CCCCGCTTTGTAAACTNATTTCTAATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
Reference ( family-652 ) : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGCGGGGC--AAA-A-T-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTG-TGTT-ACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCNTGGTGCAAATAN-ATTTAG-TTTTAANCNTTAA--A--A-A--CCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
gi|1 : ATGTGTT---ACTATATATAG--TAATAAAATAAGCTTGTTTT-TAGCAT--GATATAGTTTTAGCCTACAG---------GGCATATCAA-ATGTCATGTGTCACGGCAGGGTAAAAA-A-T-CCATATGTGAGGGC----CAAA-AA-TCCATAT
gi|1 : AGGGCATATCAAA-TG-TC-ATGTGTCACGGCAGGG-T---AAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTCTA-TGTT-ATAGTGTTT-T--A-G-TATAAATGATTA-GCAAATTA-TGAA---T--TAA-A-TA----T--A--TGTCAACCCCGTCTATTCG--TGCATTCA--CACGTG--CATCCA-GCAGCGACAAC--TGT-AAGCAAC-----AGTTAAAATGGCAGAAAGAGTCATCGC--TTCTGTCTAGTAGGCTTTTGGATTTAG-AACAACTAATA----GCACAGACTCGAAG---TTACAATTGTACGAATGAAGTG-----CCCACTG-ACACTGTGCAATTTGTGGAAGACATGAAGA-------ATAAAA---ATA-----CC-----AA---ATGCAAAACA--AAAT----ATGATGTGAA---AAAGT----TGTGCGACTGGTTT--------------GGAGAAGACGTTG-GACGATTACACC------ATATCCCATCAATATGCATTTAGGAAGGTTTTT-TCTTGCAAATtaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|1 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacAATTCACTCCTTGGTGCAGGTAA-ATTTAG-TTTTAATCTTTAA--ATAA-A--CCCCGCTTTGTAAACTGATTTCTTATGCACACTGTGTCGTCATGACGTGCATAAACAAAAGAGTGATAACTCCAAGGGAAGTCACTGTATGCTATTTGTTTGAGGGGCAC-ACAA-TGG-GG-TTTATAAAGTGTGATAAATTATATAGATATA-TAAATAAAT---T-AA--AATAA-AAT--G-AAAAAAAAAG-TAAT-TAAaagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|10 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagatTATAGTAACAAAATAAGCTCGTTTT-TTGTAT--GATATAGCTTTAGTCTACAG---------GGCATATTAA-AGGTCTCGTATGTCGA------------------------GAGGGC----CAAA-AA-TCCATAAA---CG--AGAG-C---CAGAC-A---TCCGTATGTTAGGGCC--AAA-A-ATCCATATTAATGTCCGTCTG-TGCT-CTAGTGGTT-T--A-G-TATAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--TGACAAACCCGTCTATTCG--CGCACTCA--GACGCG--CTTCTA-ACGACGACAAC--CGT-AAGCATT-----AGTT-AGATAGCAAAAGGTGTCATCGCATCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAAAAG---TAATGATTGTGCAAACGAAGTG-----CCCGCTG-GCACTGTGCAATTTGGCGAAGACATCAAtaaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|11 : -AAATTTACTCCACGGTGTAAATAA-ATTTAGAATTGGACCTTTAA--A--ATA--CCCCGGGGTGT-AACTTATATCTAATCAACTC
gi|11 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaTGTAC-CTGTCAGTTTGTGGGGCAC-TCAG-TGG-GGATAT--GATATCTAACGAA--AAATGCTTTTA-TAAATAACT---TGAA--AATAATAATTAC-ATAAAAGAA--TAATGTAAtactatggcgtgtacctgtcagtttgtggggcactcagtggggatatgatatctaacgaaaaatgcttttataaataacttgaaaataataattacataaaagaataatgtaaaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaaaatttactccacggtgtaaataaatttagaattggacctttaaaataccccggggtgtaacttatatctaatcaactctactatggcgATGGTATAGCCTTTGCCAACTG---------GGCGTATTAC-AATTCACGTGTGATGGC----C--AAA-T-T-ATATATGCCAGTGC----CAAA-AT-TCCaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : gcgttta-AA-TTCACGTG---TG--ATGG-C---CAAATTA---T--ATATGCCAGTGCC--AAA-A-TTCCTAATTTACCAAAGCCTG-TATT-ACAATATTTGT--G-A-TTTTACTGTTCG-GCAAATTA-TCAG---T--AAATA-TA----T--AA-CTTCAAACCAGTCAGTTAG--TATATTTG--CGAGAG--AATCCA-ACGACAACAAC--AAT---GCGACTACTGGGTTAAAATGACAAATG----CATCA-CTTTCTGtaatttaccaaagcctgtattacaatatttgtgattttactgttcggcaaattatcagtaaatatataacttcaaaccagtcagttagtatatttgcgagagaatccaacgacaacaacaatgcgactactgggttaaaatgacaaatgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|14 : gcgtttaatggtatagcctttgccaactgggcgtattacAA-AATTCACGTGAGACGACGGGAC--AAA-A-TATCACAAACGAGGTC----AAAT-GA-TCCATATG--------------------A-A---TT-----------GCC--AAACA-ATCCTTATTGATTAAAGTCTG-TGTT-ACAGT--------------------TTTACGAGAATAA-TTAG---T--AAA-A-CAAA--T--A--GCCCAAACCTACCAATTCG--TACATTTA--CACGTG--CATCCA-ATGACGACAACATTGT--AGCGAA-----GGTTAAAATGACA----GATTAATCGCTCCCCTGaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|15 : ACTTTTTAATATACT-CTCTCTTTATATGTATT----TTATATA----GTAATAGAATAAACTTGTTTT-TTGTAT--------------GTCTACAG---------GGTATATCAA-GAGTCACGTGTGACGGCGAGCC--AAA-A-T-CCATATGCGACGAC----C-AA-AA-TCCATATagcaacagatctacggattacactatttatcactcagagaacatgtatttaacgcaagttgccatacatttgacatcatatatttaa
gi|15 : ataatcctcataaacaccttgactagaattataatggcataa----CAAG-AG-TC-ACGTG---TG--ACGG-CGAGCCAAA-A---TCCATATGCGACGACC--AAA-A--TCCATATTAATTATAGGCTG-TGTT-ACAGTGTTT-T--A-C-TA------TTTA-ACTAATTA-TCAA---T--AAA-A--A----TA-A--CCGCAAACCAGTCAATT----CGTATGTA--AGTGCGAACATCCA-ACAACAAtaattataggctgtgttacagtgttttactatttaactaattatcaataaaaataaccgcaaaccagtcaattcgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|16 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctctttatatgtattttatatagtaatagaataaacttgttttttgtatgtctacagggtatat-TTAT---TACATGTATT---ACTATATATAG-----CAAAA---GCTT---TT-TT---TATGATATAGCTTTTGCCTACTT---------GACATATTAA-AGTTCACATGTAACAGTAGGAA--ACA-C-T-CCATATGTGAGGG-----CAAT-AA-TCCATATtccggtaaaaacaa
gi|16 : ttctttaatgtgctgaaacatacagacaaAA-AG-TTCACATG---TA--ACAG-T---AGGAA-ACACTCCATATGTGAGGGC---AAT-A-ATCCATATTAATTATAGGCTG-TGTT-ACAGTG-TT-T--A-C-TATTAGGGCTTA-GC-AATCAGTGAAACCT--AAA-ATTA----TTAA--CGT-AAACCAGTTAATTAG--TATATCGA--CAAGAG--CATCCA-ATGACAACAAC--AGTGCAGCAAtaattataggctgtgttacagtgtttactattagggcttagcaatcagtgaaacctaaaattattaacgtaaaccagttaattagtatatcgacaagagcatccaatgacaacaacagtgcagcaaa
gi|17 : ttctttaatgtgctgaaacatacagacaattattacatgtattactatatatagcaaaagctttttttatgatatagcttttgcctacttgacatattTATAA-ACATT-GCAA----ACATGTATT---ACTA-ATATAAAGTAA--AAATAA-----TTAT-TTGTGTGTGTTATAACCTTAGTCTACTA---------GGCATATTAATAAGTCACGTGCAACAGCGGGAT--AAACG-T-CTATATGCGTGGG------AAACAA-TACACATa
gi|17 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgaGGG-A---TAAAC-G---TCTATATGCGTGGG----AAACA-ATACACATCAATTTCAGGCTGGTATTTAAAGAATAT-T--A----ATAAAcaatttcaggctggtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaacatgtattactaatataaagtaaaaataattatttgtgtgtgttataaccttagtctactaggcatattaataagtcacgtgcaacagcAACTCCAAGGGAAATAACTATCAGCTCTCAGTTTGTGGGGCAC-TCAATTAG-AG-TATTCGAAGTAAAATTCGTTAAAAAGAACTAGCAAATAACTAACT-AATCAAT-A-AAT--G-ATAATAGAAaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|19 : tttacgccatagtatatatagatttaactttaagccttaaaagcaacttacttccaaccG---CG--AGGA-C---CAAAA-A---TC-ATATGCGTGGGCCT-AAA-ACATCCATATTAACTATAGAATG-TGTT-ACAGTGTTT-T--A-A-T-------TTTAGGCGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTGAAAACAT--A--CGCAGG--CATCcttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|2 : ACATGTGTT---TCTATTTATAG--TAACGGAATAAGCTT--TTA-TTGTATGT--TATAG---------ACTT---------G--ATATTTA-AA----TGTGTGCTGGTGAGGC----------------------------CAAA-AACTCCATATG---AG--AGGG-C---CAAAA-A---TCCATAT
gi|2 : GG-C---CAAAA-AC--TCCATATGAGAGGGCC--AAA-A-ATCCATATCAATTATAGGCTG-TGTT-GCAGTATTT-TCCATG-AAT-AATGTTAA-GCGGTTTA-TCAG---T--AAA----A----C--A--CCTCAAACCAGTCAATTCGAATGTATTCT--CGAGCA--AA--CA-ATGACAACAATA-GGG-CAGCGA------GGTTAAGATGACAGATG----CATCGcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|2 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaTGGTGTAAATAG-ATTTAA-TTTTGAACCTTAA--A--G-ATACCCCGCTTTGTAA--TT-TTTCTAGTCGACTCCAATATGTCATTACGCGTATAAACG--------------CCAAGGGAA-T-ACTGTACGTTATCAGTTTGAGGGA-AC-TCAG-TGGTGG-TGTTCAAAGTAAGATACGTT-AATAAAatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|21 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgaTATA-TACATT-T-AT---TACATGTGTTGTCACTATATAT--AGTAACGAAATAAGCTTGTCTTGTT-----TGAAACAGC-TTAGCCTACTC---------GGTTTAATAA-AATTCgagcaacaacggagaagaatactgt
gi|22 : ttataaatagaactaaATATGCGTGGGCCTAAAA-A-ATCAATATTAATTAAAGAATG-TGTT-ACATTGTTT------GCTTTTAATCTTTG-GGGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTG--C
gi|23 : ATATCAAG-GAATTCTATAGAGACCATACAAGTCCTTGTCAA--CATGAACAATAAGAAA-----GAAATGAGAAAT-AGAaa
gi|24 : gcgcgcacgcacactctgaaaatatagtca-TTAT---AACATATGCT---ACTCTATATATAGTAACAAAATAAGCTTGTTTA-TT---TATGAT-TAGCGTTAG
gi|25 : tatgcaatgttaTAACTGTACGTTATCAGTTTGAAGGA-AC-TCGG-TGG-GG-TATTCAACGTAAAA
gi|26 : aATATCAAG-GAATTATATAGAG---ATATAAGTCCTTG--gtcgttagaaaaaa
gi|27 : ttaaaagtataatttATAAACAAAAGAGCGATAGCTCCAAGTGAAATAACTGTAt
gi|28 : cctTAT---TACGTGTGTT---AC--TATATAAAGTAACAAAATAA
gi|3 : ACGTCATAATACATT-TTAG---TTCATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGCTTT-TTGTGTATGATATAGCTTTAGTCTACAG---------GTCATATTAA-AAGTCGCGTGTGACGACAGGACC-AAACA-T-CCATGTGCGAGGGC----CAGA-AA-TCCATATG---TG--AGGG-C---CAGAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTCTG-TGCT-CTAGTGTTT-T--A-G-TTTAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--AGACAAACCCGTCTATTCC--GGCACTCA--CGCGCC--CTTCTA-ACGACGACAAC--CGT-TAGCAAC-----AGCCGGA-TGGCAAAAGGAGTCTTCGGCTCTCTGTTTTACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGACTCGAAG---TAATAATTGGGCAAACAAAGTG-----CCCA-TGTACATTGTGCAATTTGTGGAAAGCATCAAGAGAATTATACGGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAAAGCAAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTT-TGTCAA--ATACCATTGGAAGAAC---TGAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCTTGGTGCAAATAC-ATTTAG-TTTTAATCGTT----A--A-A--TCCCGCTTTGTAAACTGATTTCTAATGGACCCCACCTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTACCTGTTTTAGGGGTACGCCA---GA-GA-CAT----AG--ACACAAATAAAGTATGTGTA-CACATAATT---T-AG--AAGCA-TGT--GTAATAAAGAAGTTGAT-TAA
gi|4 : ACATGTGTG---ACTCTATATAGA--AACAAAATAAGCTTGTTAT-TT-TATAT--TATAGCTTTAGCCTACGG---------GACATATTAA-ACGCCACGTGTGACCGC------------------------AGGCC----CAAA-AA-CTCATATG---CG--ACGG-C-----AAA-A---TC-----------------------TCTATA--AATTGTAGGCAG-AGTC-ACAGTATTT-TCCA-A-T---AATATTCA-GCAAATTA-TTCT---T--AAG-A-AA----T--AATCTCTAA------TAATTCG--TT--TTTA--TTCGCG-------A-GCAACAACAG---AG--CAGCGAC-----GATTAAAATGGCA----GACCCATCG-CTTTTTGAACAACACACTCAGGGA-TTAAGACCA--TG-TG----TTACTGAAGAGAAAGCTTATTG-TTGTTT--TTGATATG-----CGCACTT-ACACCTTACAATGT-TTAAAGATATGAATAAAAT
gi|4 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaACTTACGCCATAGTGTAAATAAGATTAAA-TTTTAGACTTTAA--A--ATA--CCCCGCTTTCTAA-CTTATTTCTgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|5 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgccacgtgtgaccgcaggcccaaaaactcatatgcgacggcaaaatctctataaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtTAT---TACATGTGTT---ACTATATA--AAGTAACAAAATAAGCTTGTTTT-TT-TATATGATATAACTTTAGTCAACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC------------------------AGGGC----CAAA-AA-TCAATATG---TG--AGGG-C---CAGAA-T---TCCATGTGTGAGGGCC--AAA-A-TTCCATATCAATTTCCGTCTG-TGCT-CTAGTGTTT-T--C-G-TATAAATGTTTA-GCAAATTA-TGAA---T--GGA-A-TA----T--A--TACCAAACCCGTCTATTCG--CGCAATCA--CACGCA--C-TTCATACGACGACAAC--CGT-TAGCAAC-----AGTTAGA-TGGCAAAAGGAGGCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAT-ACCAACCGGTA----GCACAGAGTAGAAG---TAATGATTGTGCCAACGAAGTG-----CCCACGG-ACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGTATGAAGAATA--AAA-----AAAATGCAAAAC-AAAATCCGTCGTGAAAATGTTTTTGTGCGACTGGCTTGGAGAA---GTTACACCAACTA-A-CGCTGGAAGAAC---TAAATATGCAGTTAGCCTTTTTTTTCTCTCG-CAATTTACTCCTTGGTGCAAGTAT-ATTTAG-TTTTTATCGTTGAATA--A-A--TCCCGCTTTGTAAACTGATTTCTTATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTATCTGTTTTTGGGGTAC-
gi|6 : ACCTTACAGTGTACT-TTATA--TA-ATATATT---ACTATATATAG--TAACAAAATAATCTTGTTTT-TTGCATA--ATATAGTTTTAGCATACCG---------GGCATATTAA-ATGTCACGTTTCACGACAGGGCCAAAA-A-T-CCATATGCGAGAGC----AAAA-AA-TCCATATG---TG--AGGG-C---CAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTTTG-TGTT-ATAGTGTTT-T--A-G-TATAGATGTTTA-GCGAATTA-TGAA---T--TAA-A-TA----T--A--TGCCAAACCCGTCTATTCG--TGCATTCA--CACATG--CATCCG-ACGGCGACAAC--TGT-CATCAAC-----AGTTAATATGGCAGAAGGAGTCTTCGCCTTTCTGTCTAACAGGCTTTTGGA-TTAAGACCAACTGATA----GCACAGAATTGAAG---TAATAAGTTTACATACAAAGTG-----ACCACTG-ACACTGTGCAGTTTGT-GAAGACATGAAGAg
gi|6 : gtatagttaataagatacgtggctgccaaacaagcaatgAGTTTGTG--AAGACATGAAGAATA--AAAATACCAAAAGGTAAAACAAAAATACGACATGAataaaaataccaaaaggtaaaacaaaaatacgacatga
gi|7 : gtatagttaataagatacgtggctgccaaacaagcaatgaccttacagtgtactttatataatatattactatatatagtaacaaaataatcttgttttttgcataatatagttttagcataccgggcatattaaatgtcacgtttcacgacagggccaaaaatccatatgcgagagcaaaaaatccatatgtgagggccaaaaatccatatgtgagggccaaaaatccatattaatttcagtttgtgttatagtgttttagtatagatgtttagcgaattatgaattaaatatatgccaaacccgtctattcgtgcattcacacatgcatccgacggcgacaactgtcatcaacagttaatatggcagaaggagtcttcgcctttctgtctaacaggcttttggattaagaccaactgatagcacagaattgaagtaataagtttacatacaaagtgaccactgacactgtgcACACATTGTTAT---TACATGTGTT---ACTATATATAT--TAAAAAAGTAAACTTGTTTT-TTGTATA--ATATAGCTTTAGTCTACAG---------GGCATATTAA-AAGTCGCGTGTGAAGAC------------------------AGGAC----CAAA-AA-ACCATATG---TG--AGGG-C---CAA---------------------------A-A-ATCCATATCAATTTCCGTTTG-TGCT-CTAGTGTTT-T--A-G-TATAAATGTTTA-GTCAATTA-TGAA---T--GGA-A-TA----T--A--TGCAAAACCTGATTATTTG--CGCACTCA--CAGGTG--CTTCCA-ACTACAAC-GC--TAT-TAGCAAC-----ATTT-AGATGGCAAAAGGAGTCATCGTCTCTCTGTCTAACACGC-TTTGGAG-------CAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACAAAGTG-----CACGTGG-ACACTGTGCAATTTATGGAAGAAATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AA
gi|8 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatAATAAAAAAACAA---CATTTT-TT---CATCATTT---CTTAGCCTACAGTAGCTACTTGGCATATTAT-AATTCATGTGTGACAGCGGGCC--AAA-AAC-CCATAT--------------AA-CA-TTCA--------G--AGGG-A---CAAAA-A---TTGATATTTGAGGGCC--AAA-A-ATCCAAATTAATTATAAGATG-TGTT-ACATTATTT------G-C-------TTTA-AC-AATTA-TCAG---TTAAAA-A-TA----T--AA-CTGCAAACCAATCAATTCA--TATGTATA--CATGAG--CATCCA----ACAACAAC--AGTGCAGCAAC-----TCTTAAACTAACA----GATTCATTG-CTTTCTGAACAACAAAC-TCAGGATTTTA-G--AACATATATCAGGTACAGAAGAGAAG-----ATG-TTGTT--AATGATTTGATTATTCCAATG-ACATCATACAATTT-TTAAAGACA
gi|9 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaatCTACTG---------GGTATAATAA-AAGTCATGTGTGATGGCAG---------A-T-CCATATG-------------------TCCATATA---CA--AGGGGC---CAAAA-T---TCCATATGCAAGGGAC--AAA-A-CTCGATATTAATTTAAGGCTG-TGTA-ACAGTATTT-T----C-CATTACTATTGA-GCAAATTA-TTAG---T--AAA-A-AAAAAGT--A--CTACAAACCAGTTAACT----CGTATTTACTCTCGCG--CAACCA-ACAACAA-GAG--AG--CAGCGAC-----GGATAAAATGGCAGACG----TATCG-CTTTCTG---AACA-G----------TAA-ACT-----------------GAATAGAA-----AGTTGTTGTTTCAAT---ATG-----CGCACTG-ACACCATGCGATTT-T-GAGGACGTGAATAAAACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGTTGTATTTGTATTTCAATTCTAGTTTTTGTTCTTATATCTTAGAGGAAATATAGGTATGTTGACAACCAGAGTCCAGGATATGTATGCTTGAGTTTGATTGATATTAGCGATATGATACATGTCAACATGTTGACCGATTAATGTAAACACACAATGAGAAAAAATATTATACTTCCTAAACGAAAACTCATAAATTAATCTGGTCCATGGAGTAAATGAAAATACGAATATACCCGTTTGAATTAATTAATAAGAACGTATTCCATAATGGCGTAAATGTGTTTAACGTTGCGCCTTTATAATATCCCGCT
Unaligned ( gi|20 ): ATACATTTATCGTTTTTTTCACAGCTTTTTAAAAGAGAAAATATTATGGACAGATTCCTTGATATGTAATCGCCTGACTATGTAGAGATTTTAGCGACATGAGATACTCTGCCATCATTTTGACTGATATTTGTAA
Alignments
lowQualScore : 111 111 1111111 111111111 66666666666666666666666666 222222222222 1111111 11111111 1 11111 111 1 22222 4444444444 222 22 111111111 222 1 1 111 22222 11 111 1 11111 11 111 2222 22 1
lowQualScore : 1 33 5 111 555 444 1 0 2 5555555 2 1 000000000 2 0 55555555555555555555555555 5555 2 2 8888 33 2 444 2 666 2 2 55 4 33 22 1 555555555555 222 4 3 2 1 444 66 2 8888888 55 77 22 1 0 2 888 33 1 0 33 1 2 2222222 888888 0 1 11111111 1 22 3 4 9 8 1 0 9999 777 3 777 0 11111 0 4 0 111 22 1 1 1 1 77 77 99 33333 1 1 0 8 9 3 8888888888 3 333 44 1 0 777777777 333 1 3 0 000 66 5 1 2 0 77 00000 8 1 2 2 22 0 3 1 1 1 8 5 00 6 6 444 1 0 222 1 1 0 0 88888 33 000 0000 1 00 3
lowQualScore : . .. . ... ... ... . . . ....... . . ......... . . .......................... .... . . .... .. . ... . ... . . .. . .. .. . ............ ... . . . . ... .. . ....... .. .. .. . . . ... .. . . .. . . ....... ...... . . ........ . .. . . . . . . .... ... . ... . ..... . . . ... .. . . . . .. .. .. ..... . . . . . . .......... . ... .. . . ......... ... . . . ... .. . . . . .. ..... . . . . .. . . . . . . . .. . . ... . . ... . . . . ..... .. ... .... . .. .
lowQualScore : 0 33 0 000 444 000 2 1 9 3333333 1 0 777777777 5 9 11111111111111111111111111 0000 1 1 8888 77 4 111 4 555 7 5 66 7 55 55 0 999999999999 000 7 5 4 0 111 55 4 5555555 66 99 00 9 8 4 000 77 9 9 77 1 9 5555555 444444 4 2 55555555 9 33 9 6 4 9 1 8 4444 888 6 111 9 11111 1 4 7 666 11 7 5 7 4 99 77 22 33333 0 4 8 0 2 5 0000000000 7 333 00 0 7 333333333 333 0 3 0 000 77 7 0 1 1 99 33333 4 0 5 2 88 8 7 4 0 0 9 7 33 7 7 888 5 6 666 0 0 0 2 55555 88 222 0000 0 00 3
consensus : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGC-GGG--C--AA-A-AT-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCN--TGGTGCAAATAN-ATTTAG-TTTTAANCNTTAA--A--A--ACCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
Reference ( family-652 ) : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGC-GGG--C--AA-A-AT-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCT--TGGTGCAAATAN-ATTTAG-TTTTAANCTTTAA--A--A--ACCCCGCTTTGTAAACTNATTTCTAATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
gi|1 : ATGTGTT---ACTATATATAG--TAATAAAATAAGCTTGTTTT-TAGCAT--GATATAGTTTTAGCCTACAG---------GGCATATCAA-ATGTCATGTGTCACGGCAGGG--TAAAA-A-AT-CCATATGTGAGGGC----CAAA-AA-TCCATAT
gi|1 : AGGGCATATCAAA-TG-TC-ATGTGTCACGGCAGGG-T---AAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTCTATGTTATAGTGTTT-T--A-G-TATAAATGATTA-GCAAATTA-TGAA---T--TAA-A-TA----T--A--TGTCAACCCCGTCTATTCG--TGCATTCA--CACGTG--CATCCA-GCAGCGACAAC--TGT-AAGCAAC-----AGTTAAAATGGCAGAAAGAGTCATCGC--TTCTGTCTAGTAGGCTTTTGGATTTAG-AACAACTAATA----GCACAGACTCGAAG---TTACAATTGTACGAATGAAGTG-----CCCACTG-ACACTGTGCAATTTGTGGAAGACATGAAGA-------ATAAAA---ATA-----CC-----AA---ATGCAAAACA--AAAT----ATGATGTGAA---AAAGT----TGTGCGACTGGTTT--------------GGAGAAGACGTTG-GACGATTACACC------ATATCCCATCAATATGCATTTAGGAAGGTTTTT-TCTTGCAAATtaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|1 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacAATTCACTCCT--TGGTGCAGGTAA-ATTTAG-TTTTAATCTTTAA--ATAA--ACCCCGCTTTGTAAACTGATTTCTTATGCACACTGTGTCGTCATGACGTGCATAAACAAAAGAGTGATAACTCCAAGGGAAGTCACTGTATGCTATTTGTTTGAGGGGCAC-ACAA-TGG-GG-TTTATAAAGTGTGATAAATTATATAGATATA-TAAATAAAT---T-AA--AATAA-AAT--G-AAAAAAAAAG-TAAT-TAAaagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|10 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagatTATAGTAACAAAATAAGCTCGTTTT-TTGTAT--GATATAGCTTTAGTCTACAG---------GGCATATTAA-AGGTCTCGTATGTCGA--------------------------GAGGGC----CAAA-AA-TCCATAAA---CG--AGAG-C---CAGAC-A---TCCGTATGTTAGGGCC--AAA-A-ATCCATATTAATGTCCGTCTGTGCTCTAGTGGTT-T--A-G-TATAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--TGACAAACCCGTCTATTCG--CGCACTCA--GACGCG--CTTCTA-ACGACGACAAC--CGT-AAGCATT-----AGTT-AGATAGCAAAAGGTGTCATCGCATCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAAAAG---TAATGATTGTGCAAACGAAGTG-----CCCGCTG-GCACTGTGCAATTTGGCGAAGACATCAAtaaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|11 : -AAATTTACTCCA--CGGTGTAAATAA-ATTTAGAATTGGACCTTTAA--A--AT-ACCCCGGGGTGT-AACTTATATCTAATCAACTC
gi|11 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaTGTAC-CTGTCAGTTTGTGGGGCAC-TCAG-TGG-GGATAT--GATATCTAACGAA--AAATGCTTTTA-TAAATAACT---TGAA--AATAATAATTAC-ATAAAAGAA--TAATGTAAtactatggcgtgtacctgtcagtttgtggggcactcagtggggatatgatatctaacgaaaaatgcttttataaataacttgaaaataataattacataaaagaataatgtaaaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaaaatttactccacggtgtaaataaatttagaattggacctttaaaataccccggggtgtaacttatatctaatcaactctactatggcgATGGTATAGCCTTTGCCAACTG---------GGCGTATTAC-AATTCACGTGTGATGGC------C--AA-A-TT-ATATATGCCAGTGC----CAAA-AT-TCCaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : gcgttta-AA-TTCACGTG---TG--ATGG-C---CAAATTA---T--ATATGCCAGTGCC--AAA-A-TTCCTAATTTACCAAAGCCTGTATTACAATATTTGT--G-A-TTTTACTGTTCG-GCAAATTA-TCAG---T--AAATA-TA----T--AA-CTTCAAACCAGTCAGTTAG--TATATTTG--CGAGAG--AATCCA-ACGACAACAAC--AAT---GCGACTACTGGGTTAAAATGACAAATG----CATCA-CTTTCTGtaatttaccaaagcctgtattacaatatttgtgattttactgttcggcaaattatcagtaaatatataacttcaaaccagtcagttagtatatttgcgagagaatccaacgacaacaacaatgcgactactgggttaaaatgacaaatgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|14 : gcgtttaatggtatagcctttgccaactgggcgtattacAA-AATTCACGTGAGACGAC-GGGA-C--AA-A-ATATCACAAACGAGGTC----AAAT-GA-TCCATATG--------------------A-A---TT-----------GCC--AAACA-ATCCTTATTGATTAAAGTCTGTGTTACAGT--------------------TTTACGAGAATAA-TTAG---T--AAA-A-CAAA--T--A--GCCCAAACCTACCAATTCG--TACATTTA--CACGTG--CATCCA-ATGACGACAACATTGT--AGCGAA-----GGTTAAAATGACA----GATTAATCGCTCCCCTGaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|15 : ACTTTTTAATATACT-CTCTCTTTATATGTATT----TTATATA----GTAATAGAATAAACTTGTTTT-TTGTAT--------------GTCTACAG---------GGTATATCAA-GAGTCACGTGTGACGGC-GAGC-C--AA-A-AT-CCATATGCGACGAC----C-AA-AA-TCCATATagcaacagatctacggattacactatttatcactcagagaacatgtatttaacgcaagttgccatacatttgacatcatatatttaa
gi|15 : ataatcctcataaacaccttgactagaattataatggcataa----CAAG-AG-TC-ACGTG---TG--ACGG-CGAGCCAAA-A---TCCATATGCGACGACC--AAA-A--TCCATATTAATTATAGGCTGTGTTACAGTGTTT-T--A-C-TA------TTTA-ACTAATTA-TCAA---T--AAA-A--A----TA-A--CCGCAAACCAGTCAATT----CGTATGTA--AGTGCGAACATCCA-ACAACAAtaattataggctgtgttacagtgttttactatttaactaattatcaataaaaataaccgcaaaccagtcaattcgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|16 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctctttatatgtattttatatagtaatagaataaacttgttttttgtatgtctacagggtatat-TTAT---TACATGTATT---ACTATATATAG-----CAAAA---GCTT---TT-TT---TATGATATAGCTTTTGCCTACTT---------GACATATTAA-AGTTCACATGTAACAGT-AGG--A--AACA-CT-CCATATGTGAGGG-----CAAT-AA-TCCATATtccggtaaaaacaa
gi|16 : ttctttaatgtgctgaaacatacagacaaAA-AG-TTCACATG---TA--ACAG-T---AGGAA-ACACTCCATATGTGAGGGC---AAT-A-ATCCATATTAATTATAGGCTGTGTTACAGTG-TT-T--A-C-TATTAGGGCTTA-GC-AATCAGTGAAACCT--AAA-ATTA----TTAA--CGT-AAACCAGTTAATTAG--TATATCGA--CAAGAG--CATCCA-ATGACAACAAC--AGTGCAGCAAtaattataggctgtgttacagtgtttactattagggcttagcaatcagtgaaacctaaaattattaacgtaaaccagttaattagtatatcgacaagagcatccaatgacaacaacagtgcagcaaa
gi|17 : ttctttaatgtgctgaaacatacagacaattattacatgtattactatatatagcaaaagctttttttatgatatagcttttgcctacttgacatattTATAA-ACATT-GCAA----ACATGTATT---ACTA-ATATAAAGTAA--AAATAA-----TTAT-TTGTGTGTGTTATAACCTTAGTCTACTA---------GGCATATTAATAAGTCACGTGCAACAGC-GGGA-T--AA-ACGT-CTATATGCGTGGG------AAACAA-TACACATa
gi|17 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgaGGG-A---TAAAC-G---TCTATATGCGTGGG----AAACA-ATACACATCAATTTCAGGCTG-------GTATT-----------TAAA---------GAA-TA-TTAA---TAAAAA-A-AA----T--A--CCCCAAACcaatttcaggctggtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaacatgtattactaatataaagtaaaaataattatttgtgtgtgttataaccttagtctactaggcatattaataagtcacgtgcaacagcTTTACGCCA--TAGTATATATAG-ATTTAA-CTTTAAGCCTTAA--A--A--GC-----------AACTTACTTCCAACCAACTCCaattgtatttaatatgtaaatatcaaa
gi|18 : AACTCCAAGGGAAATAACTATCAGCTCTCAGTTTGTGGGGCAC-TCAATTAG-AG-TATTCGAAGTAAAATTCGTTAAAAAGAACTAGCAAATAACTAACT-AATCAAT-A-AAT--G-ATAATAGAAaagggaaataactatcagctctcagtttgtggggcactcaattagagtattcgaagtaaaattcgttaaaaagaactagcaaataactaactaatcaataaatgataatagaacttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|19 : tttacgccatagtatatatagatttaactttaagccttaaaagcaacttacttccaaccG---CG--AGGA-C---CAAAA-A---TC-ATATGCGTGGGCCT-AAA-ACATCCATATTAACTATAGAATGTGTTACAGTGTTT-T--A-A-T-------TTTAGGCGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTGAAAACAT--A--CGCAGG--CATCcttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|2 : ACATGTGTT---TCTATTTATAG--TAACGGAATAAGCTT--TTA-TTGTATGT--TATAG---------ACTT---------G--ATATTTA-AA----TGTGTGCTGGT-GAG-------------------------GC----CAAA-AACTCCATATG---AG--AGGG-C---CAAAA-A---TCCATAT
gi|2 : GG-C---CAAAA-AC--TCCATATGAGAGGGCC--AAA-A-ATCCATATCAATTATAGGCTGTGTTGCAGTATTT-TCCATG-AAT-AATGTTAA-GCGGTTTA-TCAG---T--AAA----A----C--A--CCTCAAACCAGTCAATTCGAATGTATTCT--CGAGCA--AA--CA-ATGACAACAATA-GGG-CAGCGA------GGTTAAGATGACAGATG----CATCGcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|2 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaAATTCACCTATGATGGTGTAAATAG-ATTTAA-TTTTGAACCTTAA--A--GATACCCCGCTTTGTAA--TT-TTTCTAGTCGACTCCAATATGTCATTACGCGTATAAACG--------------CCAAGGGAA-T-ACTGTACGTTATCAGTTTGAGGGA-AC-TCAG-TGGTGG-TGTTCAAAGTAAGATACGTT-AATAAAatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|21 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagTATA-TACATT-T-AT---TACATGTGTTGTCACTATATAT--AGTAACGAAATAAGCTTGTCTTGTT-----TGAAACAGC-TTAGCCTACTC---------GGTTTAATAA-AATTCgagcaacaacggagaagaatactgt
gi|22 : ttataaatagaactaaATATGCGTGGGCCTAAAA-A-ATCAATATTAATTAAAGAATGTGTTACATTGTTT------GCTTTTAATCTTTG-GGGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTG--C
gi|23 : ATATCAAG-GAATTCTATAGAGACCATACAAGTCCTTGTCAA--CATGAACAATAAGAAA-----GAAATGAGAAAT-AGAaa
gi|24 : gcgcgcacgcacactctgaaaatatagtca-TTAT---AACATATGCT---ACTCTATATATAGTAACAAAATAAGCTTGTTTA-TT---TATGAT-TAGCGTTAG
gi|25 : tatgcaatgttaTAACTGTACGTTATCAGTTTGAAGGA-AC-TCGG-TGG-GG-TATTCAACGTAAAA
gi|26 : aATATCAAG-GAATTATATAGAG---ATATAAGTCCTTG--gtcgttagaaaaaa
gi|27 : ttaaaagtataatttATAAACAAAAGAGCGATAGCTCCAAGTGAAATAACTGTAt
gi|28 : cctTAT---TACGTGTGTT---AC--TATATAAAGTAACAAAATAA
gi|3 : ACGTCATAATACATT-TTAG---TTCATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGCTTT-TTGTGTATGATATAGCTTTAGTCTACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC-AGGACC--AA-ACAT-CCATGTGCGAGGGC----CAGA-AA-TCCATATG---TG--AGGG-C---CAGAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--A-G-TTTAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--AGACAAACCCGTCTATTCC--GGCACTCA--CGCGCC--CTTCTA-ACGACGACAAC--CGT-TAGCAAC-----AGCCGGA-TGGCAAAAGGAGTCTTCGGCTCTCTGTTTTACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGACTCGAAG---TAATAATTGGGCAAACAAAGTG-----CCCA-TGTACATTGTGCAATTTGTGGAAAGCATCAAGAGAATTATACGGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAAAGCAAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTT-TGTCAA--ATACCATTGGAAGAAC---TGAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCT--TGGTGCAAATAC-ATTTAG-TTTTAATCGTT----A--A--ATCCCGCTTTGTAAACTGATTTCTAATGGACCCCACCTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTACCTGTTTTAGGGGTACGCCA---GA-GA-CAT----AG--ACACAAATAAAGTATGTGTA-CACATAATT---T-AG--AAGCA-TGT--GTAATAAAGAAGTTGAT-TAA
gi|4 : ACATGTGTG---ACTCTATATAGA--AACAAAATAAGCTTGTTAT-TT-TATAT--TATAGCTTTAGCCTACGG---------GACATATTAA-ACGCCACGTGTGACCGC-AGG--C-----------------------C----CAAA-AA-CTCATATG---CG--ACGG-C-----AAA-A---TC-----------------------TCTATA--AATTGTAGGCAGAGTCACAGTATTT-TCCA-A-T---AATATTCA-GCAAATTA-TTCT---T--AAG-A-AA----T--AATCTCTAA------TAATTCG--TT--TTTA--TTCGCG-------A-GCAACAACAG---AG--CAGCGAC-----GATTAAAATGGCA----GACCCATCG-CTTTTTGAACAACACACTCAGGGA-TTAAGACCA--TG-TG----TTACTGAAGAGAAAGCTTATTG-TTGTTT--TTGATATG-----CGCACTT-ACACCTTACAATGT-TTAAAGATATGAATAAAAT
gi|4 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaACTTACGCCA--TAGTGTAAATAAGATTAAA-TTTTAGACTTTAA--A--AT-ACCCCGCTTTCT-AACTTATTTCTgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|5 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgccacgtgtgaccgcaggcccaaaaactcatatgcgacggcaaaatctctataaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtTAT---TACATGTGTT---ACTATATA--AAGTAACAAAATAAGCTTGTTTT-TT-TATATGATATAACTTTAGTCAACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC--------------------------AGGGC----CAAA-AA-TCAATATG---TG--AGGG-C---CAGAA-T---TCCATGTGTGAGGGCC--AAA-A-TTCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--C-G-TATAAATGTTTA-GCAAATTA-TGAA---T--GGA-A-TA----T--A--TACCAAACCCGTCTATTCG--CGCAATCA--CACGCA--C-TTCATACGACGACAAC--CGT-TAGCAAC-----AGTTAGA-TGGCAAAAGGAGGCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAT-ACCAACCGGTA----GCACAGAGTAGAAG---TAATGATTGTGCCAACGAAGTG-----CCCACGG-ACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGTATGAAGAATA--AAA-----AAAATGCAAAAC-AAAATCCGTCGTGAAAATGTTTTTGTGCGACTGGCTTGGAGAA---GTTACACCAACTA-A-CGCTGGAAGAAC---TAAATATGCAGTTAGCCTTTTTTTTCTCTCG-CAATTTACTCCT--TGGTGCAAGTAT-ATTTAG-TTTTTATCGTTGAATA--A--ATCCCGCTTTGTAAACTGATTTCTTATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTATCTGTTTTTGGGGTAC-
gi|6 : ACCTTACAGTGTACT-TTATA--TA-ATATATT---ACTATATATAG--TAACAAAATAATCTTGTTTT-TTGCATA--ATATAGTTTTAGCATACCG---------GGCATATTAA-ATGTCACGTTTCACGACAGGG--CCAAA-A-AT-CCATATGCGAGAGC----AAAA-AA-TCCATATG---TG--AGGG-C---CAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTTTGTGTTATAGTGTTT-T--A-G-TATAGATGTTTA-GCGAATTA-TGAA---T--TAA-A-TA----T--A--TGCCAAACCCGTCTATTCG--TGCATTCA--CACATG--CATCCG-ACGGCGACAAC--TGT-CATCAAC-----AGTTAATATGGCAGAAGGAGTCTTCGCCTTTCTGTCTAACAGGCTTTTGGA-TTAAGACCAACTGATA----GCACAGAATTGAAG---TAATAAGTTTACATACAAAGTG-----ACCACTG-ACACTGTGCAGTTTGT-GAAGACATGAAGAg
gi|6 : gtatagttaataagatacgtggctgccaaacaagcaatgAGTTTGTG--AAGACATGAAGAATA--AAAATACCAAAAGGTAAAACAAAAATACGACATGAataaaaataccaaaaggtaaaacaaaaatacgacatga
gi|7 : gtatagttaataagatacgtggctgccaaacaagcaatgaccttacagtgtactttatataatatattactatatatagtaacaaaataatcttgttttttgcataatatagttttagcataccgggcatattaaatgtcacgtttcacgacagggccaaaaatccatatgcgagagcaaaaaatccatatgtgagggccaaaaatccatatgtgagggccaaaaatccatattaatttcagtttgtgttatagtgttttagtatagatgtttagcgaattatgaattaaatatatgccaaacccgtctattcgtgcattcacacatgcatccgacggcgacaactgtcatcaacagttaatatggcagaaggagtcttcgcctttctgtctaacaggcttttggattaagaccaactgatagcacagaattgaagtaataagtttacatacaaagtgaccactgacactgtgcACACATTGTTAT---TACATGTGTT---ACTATATATAT--TAAAAAAGTAAACTTGTTTT-TTGTATA--ATATAGCTTTAGTCTACAG---------GGCATATTAA-AAGTCGCGTGTGAAGAC--------------------------AGGAC----CAAA-AA-ACCATATG---TG--AGGG-C---CAAAA-A---TCCATAT--------C--AA---------------TTTCCGTTTGTGCTCTAGTGTTT-T--A-G-TATAAATGTTTA-GTCAATTA-TGAA---T--GGA-A-TA----T--A--TGCAAAACCTGATTATTTG--CGCACTCA--CAGGTG--CTTCCA-ACTACAAC-GC--TAT-TAGCAAC-----ATTT-AGATGGCAAAAGGAGTCATCGTCTCTCTGTCTAACACGC-TTTGGAG-------CAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACAAAGTG-----CACGTGG-ACACTGTGCAATTTATGGAAGAAATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AA
gi|8 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatAATAAAAAAACAA---CATTTT-TT---CATCATTT---CTTAGCCTACAGTAGCTACTTGGCATATTAT-AATTCATGTGTGACAGC-GGG--CCAAA-A-AC-CCATAT--------------AA-CA-TTCA--------G--AGGG-A---CAAAA-A---TTGATATTTGAGGGCC--AAA-A-ATCCAAATTAATTATAAGATGTGTTACATTATTT------G-C-------TTTA-AC-AATTA-TCAG---TTAAAA-A-TA----T--AA-CTGCAAACCAATCAATTCA--TATGTATA--CATGAG--CATCCA----ACAACAAC--AGTGCAGCAAC-----TCTTAAACTAACA----GATTCATTG-CTTTCTGAACAACAAAC-TCAGGATTTTA-G--AACATATATCAGGTACAGAAGAGAAG-----ATG-TTGTT--AATGATTTGATTATTCCAATG-ACATCATACAATTT-TTAAAGACA
gi|9 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaatCTACTG---------GGTATAATAA-AAGTCATGTGTGATGGC-AG-----------AT-CCATATG-------------------TCCATATA---CA--AGGGGC---CAAAA-T---TCCATATGCAAGGGAC--AAA-A-CTCGATATTAATTTAAGGCTGTGTAACAGTATTT-T----C-CATTACTATTGA-GCAAATTA-TTAG---T--AAA-A-AAAAAGT--A--CTACAAACCAGTTAACT----CGTATTTACTCTCGCG--CAACCA-ACAACAA-GAG--AG--CAGCGAC-----GGATAAAATGGCAGACG----TATCG-CTTTCTG---AACA-G----------TAA-ACT-----------------GAATAGAA-----AGTTGTTGTTTCAAT---ATG-----CGCACTG-ACACCATGCGATTT-T-GAGGACGTGAATAAAACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGTTGTATTTGTATTTCAATTCTAGTTTTTGTTCTTATATCTTAGAGGAAATATAGGTATGTTGACAACCAGAGTCCAGGATATGTATGCTTGAGTTTGATTGATATTAGCGATATGATACATGTCAACATGTTGACCGATTAATGTAAACACACAATGAGAAAAAATATTATACTTCCTAAACGAAAACTCATAAATTAATCTGGTCCATGGAGTAAATGAAAATACGAATATACCCGTTTGAATTAATTAATAAGAACGTATTCCATAATGGCGTAAATGTGTTTAACGTTGCGCCTTTATAATATCCCGCT
Unaligned ( gi|20 ): ATACATTTATCGTTTTTTTCACAGCTTTTTAAAAGAGAAAATATTATGGACAGATTCCTTGATATGTAATCGCCTGACTATGTAGAGATTTTAGCGACATGAGATACTCTGCCATCATTTTGACTGATATTTGTAA
Alignments
lowQualScore : 111 111 1111111 111111111 66666666666666666666666666 222222222222 1111111 11111111 1 11111 111 1 22222 4444444444 222 22 111111111 222 1 1 1111111111 11 111 1 11111 11 111 2222 22 1
lowQualScore : 1 33 5 111 555 444 1 0 2 5555555 2 1 000000000 2 0 55555555555555555555555555 5555 2 2 8888 33 2 444 2 666 2 2 55 4 33 22 1 555555555555 222 4 3 2 1 444 66 2 8888888 55 77 22 1 0 2 888 33 1 0 33 1 2 2222222 888888 0 1 11111111 1 22 3 4 9 8 1 0 9999 777 3 777 0 11111 0 4 0 111 22 1 1 1 1 77 77 99 33333 1 1 0 8 9 3 8888888888 3 333 44 1 0 777777777 333 1 3 0 1 77 6 0 1 1 1 6666666666 7 3 1 5 2 22 0 3 1 1 1 8 5 00 6 6 444 1 0 222 1 1 0 0 88888 33 000 0000 1 00 3
lowQualScore : . .. . ... ... ... . . . ....... . . ......... . . .......................... .... . . .... .. . ... . ... . . .. . .. .. . ............ ... . . . . ... .. . ....... .. .. .. . . . ... .. . . .. . . ....... ...... . . ........ . .. . . . . . . .... ... . ... . ..... . . . ... .. . . . . .. .. .. ..... . . . . . . .......... . ... .. . . ......... ... . . . . .. . . . . . .......... . . . . . .. . . . . . . . .. . . ... . . ... . . . . ..... .. ... .... . .. .
lowQualScore : 0 33 0 000 444 000 2 1 9 3333333 1 0 777777777 5 9 11111111111111111111111111 0000 1 1 8888 77 4 111 4 555 7 5 66 7 55 55 0 999999999999 000 7 5 4 0 111 55 4 5555555 66 99 00 9 8 4 000 77 9 9 77 1 9 5555555 444444 4 2 55555555 9 33 9 6 4 9 1 8 4444 888 6 111 9 11111 1 4 7 666 11 7 5 7 4 99 77 22 33333 0 4 8 0 2 5 0000000000 7 333 00 0 7 333333333 333 0 3 0 0 77 7 3 0 0 7 3333333333 3 0 4 0 2 88 8 7 4 0 0 9 7 33 7 7 888 5 6 666 0 0 0 2 55555 88 222 0000 0 00 3
consensus : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGC-GGG--C--AA-A-AT-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCTTGGTGCAAATAN-ATTTAG-TTTTAANCTTTAA--A--A-A--CCCCGCTTTGTAAACTNATTTCTAATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
Reference ( family-652 ) : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGC-GGG--C--AA-A-AT-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCNTGGTGCAAATAN-ATTTAG-TTTTAANCNTTAA--A--A-A--CCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
gi|1 : ATGTGTT---ACTATATATAG--TAATAAAATAAGCTTGTTTT-TAGCAT--GATATAGTTTTAGCCTACAG---------GGCATATCAA-ATGTCATGTGTCACGGCAGGG--TAAAA-A-AT-CCATATGTGAGGGC----CAAA-AA-TCCATAT
gi|1 : AGGGCATATCAAA-TG-TC-ATGTGTCACGGCAGGG-T---AAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTCTATGTTATAGTGTTT-T--A-G-TATAAATGATTA-GCAAATTA-TGAA---T--TAA-A-TA----T--A--TGTCAACCCCGTCTATTCG--TGCATTCA--CACGTG--CATCCA-GCAGCGACAAC--TGT-AAGCAAC-----AGTTAAAATGGCAGAAAGAGTCATCGC--TTCTGTCTAGTAGGCTTTTGGATTTAG-AACAACTAATA----GCACAGACTCGAAG---TTACAATTGTACGAATGAAGTG-----CCCACTG-ACACTGTGCAATTTGTGGAAGACATGAAGA-------ATAAAA---ATA-----CC-----AA---ATGCAAAACA--AAAT----ATGATGTGAA---AAAGT----TGTGCGACTGGTTT--------------GGAGAAGACGTTG-GACGATTACACC------ATATCCCATCAATATGCATTTAGGAAGGTTTTT-TCTTGCAAATtaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|1 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacAATTCACTCCTTGGTGCAGGTAA-ATTTAG-TTTTAATCTTTAA--ATAA-A--CCCCGCTTTGTAAACTGATTTCTTATGCACACTGTGTCGTCATGACGTGCATAAACAAAAGAGTGATAACTCCAAGGGAAGTCACTGTATGCTATTTGTTTGAGGGGCAC-ACAA-TGG-GG-TTTATAAAGTGTGATAAATTATATAGATATA-TAAATAAAT---T-AA--AATAA-AAT--G-AAAAAAAAAG-TAAT-TAAaagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|10 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagatTATAGTAACAAAATAAGCTCGTTTT-TTGTAT--GATATAGCTTTAGTCTACAG---------GGCATATTAA-AGGTCTCGTATGTCGA--------------------------GAGGGC----CAAA-AA-TCCATAAA---CG--AGAG-C---CAGAC-A---TCCGTATGTTAGGGCC--AAA-A-ATCCATATTAATGTCCGTCTGTGCTCTAGTGGTT-T--A-G-TATAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--TGACAAACCCGTCTATTCG--CGCACTCA--GACGCG--CTTCTA-ACGACGACAAC--CGT-AAGCATT-----AGTT-AGATAGCAAAAGGTGTCATCGCATCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAAAAG---TAATGATTGTGCAAACGAAGTG-----CCCGCTG-GCACTGTGCAATTTGGCGAAGACATCAAtaaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|11 : -AAATTTACTCCACGGTGTAAATAA-ATTTAGAATTGGACCTTTAA--A--ATA--CCCCGGGGTGT-AACTTATATCTAATCAACTC
gi|11 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaTGTAC-CTGTCAGTTTGTGGGGCAC-TCAG-TGG-GGATAT--GATATCTAACGAA--AAATGCTTTTA-TAAATAACT---TGAA--AATAATAATTAC-ATAAAAGAA--TAATGTAAtactatggcgtgtacctgtcagtttgtggggcactcagtggggatatgatatctaacgaaaaatgcttttataaataacttgaaaataataattacataaaagaataatgtaaaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaaaatttactccacggtgtaaataaatttagaattggacctttaaaataccccggggtgtaacttatatctaatcaactctactatggcgATGGTATAGCCTTTGCCAACTG---------GGCGTATTAC-AATTCACGTGTGATGGC------C--AA-A-TT-ATATATGCCAGTGC----CAAA-AT-TCCaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : gcgttta-AA-TTCACGTG---TG--ATGG-C---CAAATTA---T--ATATGCCAGTGCC--AAA-A-TTCCTAATTTACCAAAGCCTGTATTACAATATTTGT--G-A-TTTTACTGTTCG-GCAAATTA-TCAG---T--AAATA-TA----T--AA-CTTCAAACCAGTCAGTTAG--TATATTTG--CGAGAG--AATCCA-ACGACAACAAC--AAT---GCGACTACTGGGTTAAAATGACAAATG----CATCA-CTTTCTGtaatttaccaaagcctgtattacaatatttgtgattttactgttcggcaaattatcagtaaatatataacttcaaaccagtcagttagtatatttgcgagagaatccaacgacaacaacaatgcgactactgggttaaaatgacaaatgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|14 : gcgtttaatggtatagcctttgccaactgggcgtattacAA-AATTCACGTGAGACGAC-GGGA-C--AA-A-ATATCACAAACGAGGTC----AAAT-GA-TCCATATG--------------------A-A---TT-----------GCC--AAACA-ATCCTTATTGATTAAAGTCTGTGTTACAGT--------------------TTTACGAGAATAA-TTAG---T--AAA-A-CAAA--T--A--GCCCAAACCTACCAATTCG--TACATTTA--CACGTG--CATCCA-ATGACGACAACATTGT--AGCGAA-----GGTTAAAATGACA----GATTAATCGCTCCCCTGaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|15 : ACTTTTTAATATACT-CTCTCTTTATATGTATT----TTATATA----GTAATAGAATAAACTTGTTTT-TTGTAT--------------GTCTACAG---------GGTATATCAA-GAGTCACGTGTGACGGC-GAGC-C--AA-A-AT-CCATATGCGACGAC----C-AA-AA-TCCATATagcaacagatctacggattacactatttatcactcagagaacatgtatttaacgcaagttgccatacatttgacatcatatatttaa
gi|15 : ataatcctcataaacaccttgactagaattataatggcataa----CAAG-AG-TC-ACGTG---TG--ACGG-CGAGCCAAA-A---TCCATATGCGACGACC--AAA-A--TCCATATTAATTATAGGCTGTGTTACAGTGTTT-T--A-C-TA------TTTA-ACTAATTA-TCAA---T--AAA-A--A----TA-A--CCGCAAACCAGTCAATT----CGTATGTA--AGTGCGAACATCCA-ACAACAAtaattataggctgtgttacagtgttttactatttaactaattatcaataaaaataaccgcaaaccagtcaattcgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|16 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctctttatatgtattttatatagtaatagaataaacttgttttttgtatgtctacagggtatat-TTAT---TACATGTATT---ACTATATATAG-----CAAAA---GCTT---TT-TT---TATGATATAGCTTTTGCCTACTT---------GACATATTAA-AGTTCACATGTAACAGT-AGG--A--AACA-CT-CCATATGTGAGGG-----CAAT-AA-TCCATATtccggtaaaaacaa
gi|16 : ttctttaatgtgctgaaacatacagacaaAA-AG-TTCACATG---TA--ACAG-T---AGGAA-ACACTCCATATGTGAGGGC---AAT-A-ATCCATATTAATTATAGGCTGTGTTACAGTG-TT-T--A-C-TATTAGGGCTTA-GC-AATCAGTGAAACCT--AAA-ATTA----TTAA--CGT-AAACCAGTTAATTAG--TATATCGA--CAAGAG--CATCCA-ATGACAACAAC--AGTGCAGCAAtaattataggctgtgttacagtgtttactattagggcttagcaatcagtgaaacctaaaattattaacgtaaaccagttaattagtatatcgacaagagcatccaatgacaacaacagtgcagcaaa
gi|17 : ttctttaatgtgctgaaacatacagacaattattacatgtattactatatatagcaaaagctttttttatgatatagcttttgcctacttgacatattTATAA-ACATT-GCAA----ACATGTATT---ACTA-ATATAAAGTAA--AAATAA-----TTAT-TTGTGTGTGTTATAACCTTAGTCTACTA---------GGCATATTAATAAGTCACGTGCAACAGC-GGGA-T--AA-ACGT-CTATATGCGTGGG------AAACAA-TACACATa
gi|17 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgaGGG-A---TAAAC-G---TCTATATGCGTGGG----AAACA-ATACACATCAATTTCAGGCTG-------GTATT-----------TAAA---------GAA-TA-TTAA---TAAAAA-A-AA----T--A--CCCCAAACcaatttcaggctggtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaacatgtattactaatataaagtaaaaataattatttgtgtgtgttataaccttagtctactaggcatattaataagtcacgtgcaacagcAACTCCAAGGGAAATAACTATCAGCTCTCAGTTTGTGGGGCAC-TCAATTAG-AG-TATTCGAAGTAAAATTCGTTAAAAAGAACTAGCAAATAACTAACT-AATCAAT-A-AAT--G-ATAATAGAAaattgtatttaatatgtaaatatcaaa
gi|19 : tttacgccatagtatatatagatttaactttaagccttaaaagcaacttacttccaaccG---CG--AGGA-C---CAAAA-A---TC-ATATGCGTGGGCCT-AAA-ACATCCATATTAACTATAGAATGTGTTACAGTGTTT-T--A-A-T-------TTTAGGCGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTGAAAACAT--A--CGCAGG--CATCcttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|2 : ACATGTGTT---TCTATTTATAG--TAACGGAATAAGCTT--TTA-TTGTATGT--TATAG---------ACTT---------G--ATATTTA-AA----TGTGTGCTGGT-GAG-------------------------GC----CAAA-AACTCCATATG---AG--AGGG-C---CAAAA-A---TCCATAT
gi|2 : GG-C---CAAAA-AC--TCCATATGAGAGGGCC--AAA-A-ATCCATATCAATTATAGGCTGTGTTGCAGTATTT-TCCATG-AAT-AATGTTAA-GCGGTTTA-TCAG---T--AAA----A----C--A--CCTCAAACCAGTCAATTCGAATGTATTCT--CGAGCA--AA--CA-ATGACAACAATA-GGG-CAGCGA------GGTTAAGATGACAGATG----CATCGcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|2 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaTGGTGTAAATAG-ATTTAA-TTTTGAACCTTAA--A--G-ATACCCCGCTTTGTAA--TT-TTTCTAGTCGACTCCAATATGTCATTACGCGTATAAACG--------------CCAAGGGAA-T-ACTGTACGTTATCAGTTTGAGGGA-AC-TCAG-TGGTGG-TGTTCAAAGTAAGATACGTT-AATAAAatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|21 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgaTATA-TACATT-T-AT---TACATGTGTTGTCACTATATAT--AGTAACGAAATAAGCTTGTCTTGTT-----TGAAACAGC-TTAGCCTACTC---------GGTTTAATAA-AATTCgagcaacaacggagaagaatactgt
gi|22 : ttataaatagaactaaATATGCGTGGGCCTAAAA-A-ATCAATATTAATTAAAGAATGTGTTACATTGTTT------GCTTTTAATCTTTG-GGGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTG--C
gi|23 : ATATCAAG-GAATTCTATAGAGACCATACAAGTCCTTGTCAA--CATGAACAATAAGAAA-----GAAATGAGAAAT-AGAaa
gi|24 : gcgcgcacgcacactctgaaaatatagtca-TTAT---AACATATGCT---ACTCTATATATAGTAACAAAATAAGCTTGTTTA-TT---TATGAT-TAGCGTTAG
gi|25 : tatgcaatgttaTAACTGTACGTTATCAGTTTGAAGGA-AC-TCGG-TGG-GG-TATTCAACGTAAAA
gi|26 : aATATCAAG-GAATTATATAGAG---ATATAAGTCCTTG--gtcgttagaaaaaa
gi|27 : ttaaaagtataatttATAAACAAAAGAGCGATAGCTCCAAGTGAAATAACTGTAt
gi|28 : cctTAT---TACGTGTGTT---AC--TATATAAAGTAACAAAATAA
gi|3 : ACGTCATAATACATT-TTAG---TTCATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGCTTT-TTGTGTATGATATAGCTTTAGTCTACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC-AGGACC--AA-ACAT-CCATGTGCGAGGGC----CAGA-AA-TCCATATG---TG--AGGG-C---CAGAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--A-G-TTTAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--AGACAAACCCGTCTATTCC--GGCACTCA--CGCGCC--CTTCTA-ACGACGACAAC--CGT-TAGCAAC-----AGCCGGA-TGGCAAAAGGAGTCTTCGGCTCTCTGTTTTACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGACTCGAAG---TAATAATTGGGCAAACAAAGTG-----CCCA-TGTACATTGTGCAATTTGTGGAAAGCATCAAGAGAATTATACGGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAAAGCAAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTT-TGTCAA--ATACCATTGGAAGAAC---TGAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCTTGGTGCAAATAC-ATTTAG-TTTTAATCGTT----A--A-A--TCCCGCTTTGTAAACTGATTTCTAATGGACCCCACCTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTACCTGTTTTAGGGGTACGCCA---GA-GA-CAT----AG--ACACAAATAAAGTATGTGTA-CACATAATT---T-AG--AAGCA-TGT--GTAATAAAGAAGTTGAT-TAA
gi|4 : ACATGTGTG---ACTCTATATAGA--AACAAAATAAGCTTGTTAT-TT-TATAT--TATAGCTTTAGCCTACGG---------GACATATTAA-ACGCCACGTGTGACCGC-AGG--C-----------------------C----CAAA-AA-CTCATATG---CG--ACGG-C-----AAA-A---TC-----------------------TCTATA--AATTGTAGGCAGAGTCACAGTATTT-TCCA-A-T---AATATTCA-GCAAATTA-TTCT---T--AAG-A-AA----T--AATCTCTAA------TAATTCG--TT--TTTA--TTCGCG-------A-GCAACAACAG---AG--CAGCGAC-----GATTAAAATGGCA----GACCCATCG-CTTTTTGAACAACACACTCAGGGA-TTAAGACCA--TG-TG----TTACTGAAGAGAAAGCTTATTG-TTGTTT--TTGATATG-----CGCACTT-ACACCTTACAATGT-TTAAAGATATGAATAAAAT
gi|4 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaACTTACGCCATAGTGTAAATAAGATTAAA-TTTTAGACTTTAA--A--ATA--CCCCGCTTTCTAA-CTTATTTCTgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|5 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgccacgtgtgaccgcaggcccaaaaactcatatgcgacggcaaaatctctataaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtTAT---TACATGTGTT---ACTATATA--AAGTAACAAAATAAGCTTGTTTT-TT-TATATGATATAACTTTAGTCAACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC--------------------------AGGGC----CAAA-AA-TCAATATG---TG--AGGG-C---CAGAA-T---TCCATGTGTGAGGGCC--AAA-A-TTCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--C-G-TATAAATGTTTA-GCAAATTA-TGAA---T--GGA-A-TA----T--A--TACCAAACCCGTCTATTCG--CGCAATCA--CACGCA--C-TTCATACGACGACAAC--CGT-TAGCAAC-----AGTTAGA-TGGCAAAAGGAGGCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAT-ACCAACCGGTA----GCACAGAGTAGAAG---TAATGATTGTGCCAACGAAGTG-----CCCACGG-ACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGTATGAAGAATA--AAA-----AAAATGCAAAAC-AAAATCCGTCGTGAAAATGTTTTTGTGCGACTGGCTTGGAGAA---GTTACACCAACTA-A-CGCTGGAAGAAC---TAAATATGCAGTTAGCCTTTTTTTTCTCTCG-CAATTTACTCCTTGGTGCAAGTAT-ATTTAG-TTTTTATCGTTGAATA--A-A--TCCCGCTTTGTAAACTGATTTCTTATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTATCTGTTTTTGGGGTAC-
gi|6 : ACCTTACAGTGTACT-TTATA--TA-ATATATT---ACTATATATAG--TAACAAAATAATCTTGTTTT-TTGCATA--ATATAGTTTTAGCATACCG---------GGCATATTAA-ATGTCACGTTTCACGACAGGG--CCAAA-A-AT-CCATATGCGAGAGC----AAAA-AA-TCCATATG---TG--AGGG-C---CAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTTTGTGTTATAGTGTTT-T--A-G-TATAGATGTTTA-GCGAATTA-TGAA---T--TAA-A-TA----T--A--TGCCAAACCCGTCTATTCG--TGCATTCA--CACATG--CATCCG-ACGGCGACAAC--TGT-CATCAAC-----AGTTAATATGGCAGAAGGAGTCTTCGCCTTTCTGTCTAACAGGCTTTTGGA-TTAAGACCAACTGATA----GCACAGAATTGAAG---TAATAAGTTTACATACAAAGTG-----ACCACTG-ACACTGTGCAGTTTGT-GAAGACATGAAGAg
gi|6 : gtatagttaataagatacgtggctgccaaacaagcaatgAGTTTGTG--AAGACATGAAGAATA--AAAATACCAAAAGGTAAAACAAAAATACGACATGAataaaaataccaaaaggtaaaacaaaaatacgacatga
gi|7 : gtatagttaataagatacgtggctgccaaacaagcaatgaccttacagtgtactttatataatatattactatatatagtaacaaaataatcttgttttttgcataatatagttttagcataccgggcatattaaatgtcacgtttcacgacagggccaaaaatccatatgcgagagcaaaaaatccatatgtgagggccaaaaatccatatgtgagggccaaaaatccatattaatttcagtttgtgttatagtgttttagtatagatgtttagcgaattatgaattaaatatatgccaaacccgtctattcgtgcattcacacatgcatccgacggcgacaactgtcatcaacagttaatatggcagaaggagtcttcgcctttctgtctaacaggcttttggattaagaccaactgatagcacagaattgaagtaataagtttacatacaaagtgaccactgacactgtgcACACATTGTTAT---TACATGTGTT---ACTATATATAT--TAAAAAAGTAAACTTGTTTT-TTGTATA--ATATAGCTTTAGTCTACAG---------GGCATATTAA-AAGTCGCGTGTGAAGAC--------------------------AGGAC----CAAA-AA-ACCATATG---TG--AGGG-C---CAAAA-A---TCCATAT--------C--AA---------------TTTCCGTTTGTGCTCTAGTGTTT-T--A-G-TATAAATGTTTA-GTCAATTA-TGAA---T--GGA-A-TA----T--A--TGCAAAACCTGATTATTTG--CGCACTCA--CAGGTG--CTTCCA-ACTACAAC-GC--TAT-TAGCAAC-----ATTT-AGATGGCAAAAGGAGTCATCGTCTCTCTGTCTAACACGC-TTTGGAG-------CAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACAAAGTG-----CACGTGG-ACACTGTGCAATTTATGGAAGAAATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AA
gi|8 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatAATAAAAAAACAA---CATTTT-TT---CATCATTT---CTTAGCCTACAGTAGCTACTTGGCATATTAT-AATTCATGTGTGACAGC-GGG--CCAAA-A-AC-CCATAT--------------AA-CA-TTCA--------G--AGGG-A---CAAAA-A---TTGATATTTGAGGGCC--AAA-A-ATCCAAATTAATTATAAGATGTGTTACATTATTT------G-C-------TTTA-AC-AATTA-TCAG---TTAAAA-A-TA----T--AA-CTGCAAACCAATCAATTCA--TATGTATA--CATGAG--CATCCA----ACAACAAC--AGTGCAGCAAC-----TCTTAAACTAACA----GATTCATTG-CTTTCTGAACAACAAAC-TCAGGATTTTA-G--AACATATATCAGGTACAGAAGAGAAG-----ATG-TTGTT--AATGATTTGATTATTCCAATG-ACATCATACAATTT-TTAAAGACA
gi|9 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaatCTACTG---------GGTATAATAA-AAGTCATGTGTGATGGC-AG-----------AT-CCATATG-------------------TCCATATA---CA--AGGGGC---CAAAA-T---TCCATATGCAAGGGAC--AAA-A-CTCGATATTAATTTAAGGCTGTGTAACAGTATTT-T----C-CATTACTATTGA-GCAAATTA-TTAG---T--AAA-A-AAAAAGT--A--CTACAAACCAGTTAACT----CGTATTTACTCTCGCG--CAACCA-ACAACAA-GAG--AG--CAGCGAC-----GGATAAAATGGCAGACG----TATCG-CTTTCTG---AACA-G----------TAA-ACT-----------------GAATAGAA-----AGTTGTTGTTTCAAT---ATG-----CGCACTG-ACACCATGCGATTT-T-GAGGACGTGAATAAAACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGTTGTATTTGTATTTCAATTCTAGTTTTTGTTCTTATATCTTAGAGGAAATATAGGTATGTTGACAACCAGAGTCCAGGATATGTATGCTTGAGTTTGATTGATATTAGCGATATGATACATGTCAACATGTTGACCGATTAATGTAAACACACAATGAGAAAAAATATTATACTTCCTAAACGAAAACTCATAAATTAATCTGGTCCATGGAGTAAATGAAAATACGAATATACCCGTTTGAATTAATTAATAAGAACGTATTCCATAATGGCGTAAATGTGTTTAACGTTGCGCCTTTATAATATCCCGCT
Unaligned ( gi|20 ): ATACATTTATCGTTTTTTTCACAGCTTTTTAAAAGAGAAAATATTATGGACAGATTCCTTGATATGTAATCGCCTGACTATGTAGAGATTTTAGCGACATGAGATACTCTGCCATCATTTTGACTGATATTTGTAA
Alignments
lowQualScore : 111 111 1111111 111111111 66666666666666666666666666 222222222222 1111111 11111111 1 11111 111 1 22222 4444444444 222 22 111111111 222 1 1 111 22222 11 111 1 11111 11 111 2222 22 1
lowQualScore : 1 33 5 111 555 444 1 0 2 5555555 2 1 000000000 2 0 55555555555555555555555555 5555 2 2 8888 33 2 444 2 666 2 2 55 4 33 22 1 555555555555 222 4 3 2 1 444 66 2 8888888 55 77 22 1 0 2 888 33 1 0 33 1 2 2222222 888888 0 1 11111111 1 22 3 4 9 8 1 0 9999 777 3 777 0 11111 0 4 0 111 22 1 1 1 1 77 77 99 33333 1 1 0 8 9 3 8888888888 3 333 44 1 0 777777777 333 1 3 0 000 66 5 1 2 0 77 00000 8 1 2 2 22 0 3 1 1 1 8 5 00 6 6 444 1 0 222 1 1 0 0 88888 33 000 0000 1 00 3
lowQualScore : . .. . ... ... ... . . . ....... . . ......... . . .......................... .... . . .... .. . ... . ... . . .. . .. .. . ............ ... . . . . ... .. . ....... .. .. .. . . . ... .. . . .. . . ....... ...... . . ........ . .. . . . . . . .... ... . ... . ..... . . . ... .. . . . . .. .. .. ..... . . . . . . .......... . ... .. . . ......... ... . . . ... .. . . . . .. ..... . . . . .. . . . . . . . .. . . ... . . ... . . . . ..... .. ... .... . .. .
lowQualScore : 0 33 0 000 444 000 2 1 9 3333333 1 0 777777777 5 9 11111111111111111111111111 0000 1 1 8888 77 4 111 4 555 7 5 66 7 55 55 0 999999999999 000 7 5 4 0 111 55 4 5555555 66 99 00 9 8 4 000 77 9 9 77 1 9 5555555 444444 4 2 55555555 9 33 9 6 4 9 1 8 4444 888 6 111 9 11111 1 4 7 666 11 7 5 7 4 99 77 22 33333 0 4 8 0 2 5 0000000000 7 333 00 0 7 333333333 333 0 3 0 000 77 7 0 1 1 99 33333 4 0 5 2 88 8 7 4 0 0 9 7 33 7 7 888 5 6 666 0 0 0 2 55555 88 222 0000 0 00 3
consensus : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGC-GGG--C--AA-A-AT-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCN--TGGTGCAAATAN-ATTTAG-TTTTAANCNTTAA--A--A--ACCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
Reference ( family-652 ) : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGC-GGG--C--AA-A-AT-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCT--TGGTGCAAATAN-ATTTAG-TTTTAANCTTTAA--A--A--ACCCCGCTTTGTAAACTNATTTCTAATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
gi|1 : ATGTGTT---ACTATATATAG--TAATAAAATAAGCTTGTTTT-TAGCAT--GATATAGTTTTAGCCTACAG---------GGCATATCAA-ATGTCATGTGTCACGGCAGGG--TAAAA-A-AT-CCATATGTGAGGGC----CAAA-AA-TCCATAT
gi|1 : AGGGCATATCAAA-TG-TC-ATGTGTCACGGCAGGG-T---AAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTCTATGTTATAGTGTTT-T--A-G-TATAAATGATTA-GCAAATTA-TGAA---T--TAA-A-TA----T--A--TGTCAACCCCGTCTATTCG--TGCATTCA--CACGTG--CATCCA-GCAGCGACAAC--TGT-AAGCAAC-----AGTTAAAATGGCAGAAAGAGTCATCGC--TTCTGTCTAGTAGGCTTTTGGATTTAG-AACAACTAATA----GCACAGACTCGAAG---TTACAATTGTACGAATGAAGTG-----CCCACTG-ACACTGTGCAATTTGTGGAAGACATGAAGA-------ATAAAA---ATA-----CC-----AA---ATGCAAAACA--AAAT----ATGATGTGAA---AAAGT----TGTGCGACTGGTTT--------------GGAGAAGACGTTG-GACGATTACACC------ATATCCCATCAATATGCATTTAGGAAGGTTTTT-TCTTGCAAATtaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|1 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacAATTCACTCCT--TGGTGCAGGTAA-ATTTAG-TTTTAATCTTTAA--ATAA--ACCCCGCTTTGTAAACTGATTTCTTATGCACACTGTGTCGTCATGACGTGCATAAACAAAAGAGTGATAACTCCAAGGGAAGTCACTGTATGCTATTTGTTTGAGGGGCAC-ACAA-TGG-GG-TTTATAAAGTGTGATAAATTATATAGATATA-TAAATAAAT---T-AA--AATAA-AAT--G-AAAAAAAAAG-TAAT-TAAaagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|10 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagatTATAGTAACAAAATAAGCTCGTTTT-TTGTAT--GATATAGCTTTAGTCTACAG---------GGCATATTAA-AGGTCTCGTATGTCGA--------------------------GAGGGC----CAAA-AA-TCCATAAA---CG--AGAG-C---CAGAC-A---TCCGTATGTTAGGGCC--AAA-A-ATCCATATTAATGTCCGTCTGTGCTCTAGTGGTT-T--A-G-TATAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--TGACAAACCCGTCTATTCG--CGCACTCA--GACGCG--CTTCTA-ACGACGACAAC--CGT-AAGCATT-----AGTT-AGATAGCAAAAGGTGTCATCGCATCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAAAAG---TAATGATTGTGCAAACGAAGTG-----CCCGCTG-GCACTGTGCAATTTGGCGAAGACATCAAtaaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|11 : -AAATTTACTCCA--CGGTGTAAATAA-ATTTAGAATTGGACCTTTAA--A--AT-ACCCCGGGGTGT-AACTTATATCTAATCAACTC
gi|11 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaTGTAC-CTGTCAGTTTGTGGGGCAC-TCAG-TGG-GGATAT--GATATCTAACGAA--AAATGCTTTTA-TAAATAACT---TGAA--AATAATAATTAC-ATAAAAGAA--TAATGTAAtactatggcgtgtacctgtcagtttgtggggcactcagtggggatatgatatctaacgaaaaatgcttttataaataacttgaaaataataattacataaaagaataatgtaaaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaaaatttactccacggtgtaaataaatttagaattggacctttaaaataccccggggtgtaacttatatctaatcaactctactatggcgATGGTATAGCCTTTGCCAACTG---------GGCGTATTAC-AATTCACGTGTGATGGC------C--AA-A-TT-ATATATGCCAGTGC----CAAA-AT-TCCaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : gcgttta-AA-TTCACGTG---TG--ATGG-C---CAAATTA---T--ATATGCCAGTGCC--AAA-A-TTCCTAATTTACCAAAGCCTGTATTACAATATTTGT--G-A-TTTTACTGTTCG-GCAAATTA-TCAG---T--AAATA-TA----T--AA-CTTCAAACCAGTCAGTTAG--TATATTTG--CGAGAG--AATCCA-ACGACAACAAC--AAT---GCGACTACTGGGTTAAAATGACAAATG----CATCA-CTTTCTGtaatttaccaaagcctgtattacaatatttgtgattttactgttcggcaaattatcagtaaatatataacttcaaaccagtcagttagtatatttgcgagagaatccaacgacaacaacaatgcgactactgggttaaaatgacaaatgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|14 : gcgtttaatggtatagcctttgccaactgggcgtattacAA-AATTCACGTGAGACGAC-GGGA-C--AA-A-ATATCACAAACGAGGTC----AAAT-GA-TCCATATG--------------------A-A---TT-----------GCC--AAACA-ATCCTTATTGATTAAAGTCTGTGTTACAGT--------------------TTTACGAGAATAA-TTAG---T--AAA-A-CAAA--T--A--GCCCAAACCTACCAATTCG--TACATTTA--CACGTG--CATCCA-ATGACGACAACATTGT--AGCGAA-----GGTTAAAATGACA----GATTAATCGCTCCCCTGaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|15 : ACTTTTTAATATACT-CTCTCTTTATATGTATT----TTATATA----GTAATAGAATAAACTTGTTTT-TTGTAT--------------GTCTACAG---------GGTATATCAA-GAGTCACGTGTGACGGC-GAGC-C--AA-A-AT-CCATATGCGACGAC----C-AA-AA-TCCATATagcaacagatctacggattacactatttatcactcagagaacatgtatttaacgcaagttgccatacatttgacatcatatatttaa
gi|15 : ataatcctcataaacaccttgactagaattataatggcataa----CAAG-AG-TC-ACGTG---TG--ACGG-CGAGCCAAA-A---TCCATATGCGACGACC--AAA-A--TCCATATTAATTATAGGCTGTGTTACAGTGTTT-T--A-C-TA------TTTA-ACTAATTA-TCAA---T--AAA-A--A----TA-A--CCGCAAACCAGTCAATT----CGTATGTA--AGTGCGAACATCCA-ACAACAAtaattataggctgtgttacagtgttttactatttaactaattatcaataaaaataaccgcaaaccagtcaattcgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|16 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctctttatatgtattttatatagtaatagaataaacttgttttttgtatgtctacagggtatat-TTAT---TACATGTATT---ACTATATATAG-----CAAAA---GCTT---TT-TT---TATGATATAGCTTTTGCCTACTT---------GACATATTAA-AGTTCACATGTAACAGT-AGG--A--AACA-CT-CCATATGTGAGGG-----CAAT-AA-TCCATATtccggtaaaaacaa
gi|16 : ttctttaatgtgctgaaacatacagacaaAA-AG-TTCACATG---TA--ACAG-T---AGGAA-ACACTCCATATGTGAGGGC---AAT-A-ATCCATATTAATTATAGGCTGTGTTACAGTG-TT-T--A-C-TATTAGGGCTTA-GC-AATCAGTGAAACCT--AAA-ATTA----TTAA--CGT-AAACCAGTTAATTAG--TATATCGA--CAAGAG--CATCCA-ATGACAACAAC--AGTGCAGCAAtaattataggctgtgttacagtgtttactattagggcttagcaatcagtgaaacctaaaattattaacgtaaaccagttaattagtatatcgacaagagcatccaatgacaacaacagtgcagcaaa
gi|17 : ttctttaatgtgctgaaacatacagacaattattacatgtattactatatatagcaaaagctttttttatgatatagcttttgcctacttgacatattTATAA-ACATT-GCAA----ACATGTATT---ACTA-ATATAAAGTAA--AAATAA-----TTAT-TTGTGTGTGTTATAACCTTAGTCTACTA---------GGCATATTAATAAGTCACGTGCAACAGC-GGGA-T--AA-ACGT-CTATATGCGTGGG------AAACAA-TACACATa
gi|17 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgaGGG-A---TAAAC-G---TCTATATGCGTGGG----AAACA-ATACACATCAATTTCAGGCTG-------GTATT-----------TAAA---------GAA-TA-TTAA---TAAAAA-A-AA----T--A--CCCCAAACcaatttcaggctggtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaacatgtattactaatataaagtaaaaataattatttgtgtgtgttataaccttagtctactaggcatattaataagtcacgtgcaacagcTTTACGCCA--TAGTATATATAG-ATTTAA-CTTTAAGCCTTAA--A--A--GC-----------AACTTACTTCCAACCAACTCCaattgtatttaatatgtaaatatcaaa
gi|18 : AACTCCAAGGGAAATAACTATCAGCTCTCAGTTTGTGGGGCAC-TCAATTAG-AG-TATTCGAAGTAAAATTCGTTAAAAAGAACTAGCAAATAACTAACT-AATCAAT-A-AAT--G-ATAATAGAAaagggaaataactatcagctctcagtttgtggggcactcaattagagtattcgaagtaaaattcgttaaaaagaactagcaaataactaactaatcaataaatgataatagaacttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|19 : tttacgccatagtatatatagatttaactttaagccttaaaagcaacttacttccaaccG---CG--AGGA-C---CAAAA-A---TC-ATATGCGTGGGCCT-AAA-ACATCCATATTAACTATAGAATGTGTTACAGTGTTT-T--A-A-T-------TTTAGGCGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTGAAAACAT--A--CGCAGG--CATCcttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|2 : ACATGTGTT---TCTATTTATAG--TAACGGAATAAGCTT--TTA-TTGTATGT--TATAG---------ACTT---------G--ATATTTA-AA----TGTGTGCTGGT-GAG-------------------------GC----CAAA-AACTCCATATG---AG--AGGG-C---CAAAA-A---TCCATAT
gi|2 : GG-C---CAAAA-AC--TCCATATGAGAGGGCC--AAA-A-ATCCATATCAATTATAGGCTGTGTTGCAGTATTT-TCCATG-AAT-AATGTTAA-GCGGTTTA-TCAG---T--AAA----A----C--A--CCTCAAACCAGTCAATTCGAATGTATTCT--CGAGCA--AA--CA-ATGACAACAATA-GGG-CAGCGA------GGTTAAGATGACAGATG----CATCGcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|2 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaAATTCACCTATGATGGTGTAAATAG-ATTTAA-TTTTGAACCTTAA--A--GATACCCCGCTTTGTAA--TT-TTTCTAGTCGACTCCAATATGTCATTACGCGTATAAACG--------------CCAAGGGAA-T-ACTGTACGTTATCAGTTTGAGGGA-AC-TCAG-TGGTGG-TGTTCAAAGTAAGATACGTT-AATAAAatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|21 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagTATA-TACATT-T-AT---TACATGTGTTGTCACTATATAT--AGTAACGAAATAAGCTTGTCTTGTT-----TGAAACAGC-TTAGCCTACTC---------GGTTTAATAA-AATTCgagcaacaacggagaagaatactgt
gi|22 : ttataaatagaactaaATATGCGTGGGCCTAAAA-A-ATCAATATTAATTAAAGAATGTGTTACATTGTTT------GCTTTTAATCTTTG-GGGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTG--C
gi|23 : ATATCAAG-GAATTCTATAGAGACCATACAAGTCCTTGTCAA--CATGAACAATAAGAAA-----GAAATGAGAAAT-AGAaa
gi|24 : gcgcgcacgcacactctgaaaatatagtca-TTAT---AACATATGCT---ACTCTATATATAGTAACAAAATAAGCTTGTTTA-TT---TATGAT-TAGCGTTAG
gi|25 : tatgcaatgttaTAACTGTACGTTATCAGTTTGAAGGA-AC-TCGG-TGG-GG-TATTCAACGTAAAA
gi|26 : aATATCAAG-GAATTATATAGAG---ATATAAGTCCTTG--gtcgttagaaaaaa
gi|27 : ttaaaagtataatttATAAACAAAAGAGCGATAGCTCCAAGTGAAATAACTGTAt
gi|28 : cctTAT---TACGTGTGTT---AC--TATATAAAGTAACAAAATAA
gi|3 : ACGTCATAATACATT-TTAG---TTCATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGCTTT-TTGTGTATGATATAGCTTTAGTCTACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC-AGGACC--AA-ACAT-CCATGTGCGAGGGC----CAGA-AA-TCCATATG---TG--AGGG-C---CAGAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--A-G-TTTAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--AGACAAACCCGTCTATTCC--GGCACTCA--CGCGCC--CTTCTA-ACGACGACAAC--CGT-TAGCAAC-----AGCCGGA-TGGCAAAAGGAGTCTTCGGCTCTCTGTTTTACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGACTCGAAG---TAATAATTGGGCAAACAAAGTG-----CCCA-TGTACATTGTGCAATTTGTGGAAAGCATCAAGAGAATTATACGGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAAAGCAAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTT-TGTCAA--ATACCATTGGAAGAAC---TGAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCT--TGGTGCAAATAC-ATTTAG-TTTTAATCGTT----A--A--ATCCCGCTTTGTAAACTGATTTCTAATGGACCCCACCTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTACCTGTTTTAGGGGTACGCCA---GA-GA-CAT----AG--ACACAAATAAAGTATGTGTA-CACATAATT---T-AG--AAGCA-TGT--GTAATAAAGAAGTTGAT-TAA
gi|4 : ACATGTGTG---ACTCTATATAGA--AACAAAATAAGCTTGTTAT-TT-TATAT--TATAGCTTTAGCCTACGG---------GACATATTAA-ACGCCACGTGTGACCGC-AGG--C-----------------------C----CAAA-AA-CTCATATG---CG--ACGG-C-----AAA-A---TC-----------------------TCTATA--AATTGTAGGCAGAGTCACAGTATTT-TCCA-A-T---AATATTCA-GCAAATTA-TTCT---T--AAG-A-AA----T--AATCTCTAA------TAATTCG--TT--TTTA--TTCGCG-------A-GCAACAACAG---AG--CAGCGAC-----GATTAAAATGGCA----GACCCATCG-CTTTTTGAACAACACACTCAGGGA-TTAAGACCA--TG-TG----TTACTGAAGAGAAAGCTTATTG-TTGTTT--TTGATATG-----CGCACTT-ACACCTTACAATGT-TTAAAGATATGAATAAAAT
gi|4 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaACTTACGCCA--TAGTGTAAATAAGATTAAA-TTTTAGACTTTAA--A--AT-ACCCCGCTTTCT-AACTTATTTCTgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|5 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgccacgtgtgaccgcaggcccaaaaactcatatgcgacggcaaaatctctataaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtTAT---TACATGTGTT---ACTATATA--AAGTAACAAAATAAGCTTGTTTT-TT-TATATGATATAACTTTAGTCAACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC--------------------------AGGGC----CAAA-AA-TCAATATG---TG--AGGG-C---CAGAA-T---TCCATGTGTGAGGGCC--AAA-A-TTCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--C-G-TATAAATGTTTA-GCAAATTA-TGAA---T--GGA-A-TA----T--A--TACCAAACCCGTCTATTCG--CGCAATCA--CACGCA--C-TTCATACGACGACAAC--CGT-TAGCAAC-----AGTTAGA-TGGCAAAAGGAGGCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAT-ACCAACCGGTA----GCACAGAGTAGAAG---TAATGATTGTGCCAACGAAGTG-----CCCACGG-ACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGTATGAAGAATA--AAA-----AAAATGCAAAAC-AAAATCCGTCGTGAAAATGTTTTTGTGCGACTGGCTTGGAGAA---GTTACACCAACTA-A-CGCTGGAAGAAC---TAAATATGCAGTTAGCCTTTTTTTTCTCTCG-CAATTTACTCCT--TGGTGCAAGTAT-ATTTAG-TTTTTATCGTTGAATA--A--ATCCCGCTTTGTAAACTGATTTCTTATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTATCTGTTTTTGGGGTAC-
gi|6 : ACCTTACAGTGTACT-TTATA--TA-ATATATT---ACTATATATAG--TAACAAAATAATCTTGTTTT-TTGCATA--ATATAGTTTTAGCATACCG---------GGCATATTAA-ATGTCACGTTTCACGACAGGG--CCAAA-A-AT-CCATATGCGAGAGC----AAAA-AA-TCCATATG---TG--AGGG-C---CAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTTTGTGTTATAGTGTTT-T--A-G-TATAGATGTTTA-GCGAATTA-TGAA---T--TAA-A-TA----T--A--TGCCAAACCCGTCTATTCG--TGCATTCA--CACATG--CATCCG-ACGGCGACAAC--TGT-CATCAAC-----AGTTAATATGGCAGAAGGAGTCTTCGCCTTTCTGTCTAACAGGCTTTTGGA-TTAAGACCAACTGATA----GCACAGAATTGAAG---TAATAAGTTTACATACAAAGTG-----ACCACTG-ACACTGTGCAGTTTGT-GAAGACATGAAGAg
gi|6 : gtatagttaataagatacgtggctgccaaacaagcaatgAGTTTGTG--AAGACATGAAGAATA--AAAATACCAAAAGGTAAAACAAAAATACGACATGAataaaaataccaaaaggtaaaacaaaaatacgacatga
gi|7 : gtatagttaataagatacgtggctgccaaacaagcaatgaccttacagtgtactttatataatatattactatatatagtaacaaaataatcttgttttttgcataatatagttttagcataccgggcatattaaatgtcacgtttcacgacagggccaaaaatccatatgcgagagcaaaaaatccatatgtgagggccaaaaatccatatgtgagggccaaaaatccatattaatttcagtttgtgttatagtgttttagtatagatgtttagcgaattatgaattaaatatatgccaaacccgtctattcgtgcattcacacatgcatccgacggcgacaactgtcatcaacagttaatatggcagaaggagtcttcgcctttctgtctaacaggcttttggattaagaccaactgatagcacagaattgaagtaataagtttacatacaaagtgaccactgacactgtgcACACATTGTTAT---TACATGTGTT---ACTATATATAT--TAAAAAAGTAAACTTGTTTT-TTGTATA--ATATAGCTTTAGTCTACAG---------GGCATATTAA-AAGTCGCGTGTGAAGAC--------------------------AGGAC----CAAA-AA-ACCATATG---TG--AGGG-C---CAAAA-A---TCCATAT--------C--AA---------------TTTCCGTTTGTGCTCTAGTGTTT-T--A-G-TATAAATGTTTA-GTCAATTA-TGAA---T--GGA-A-TA----T--A--TGCAAAACCTGATTATTTG--CGCACTCA--CAGGTG--CTTCCA-ACTACAAC-GC--TAT-TAGCAAC-----ATTT-AGATGGCAAAAGGAGTCATCGTCTCTCTGTCTAACACGC-TTTGGAG-------CAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACAAAGTG-----CACGTGG-ACACTGTGCAATTTATGGAAGAAATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AA
gi|8 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatAATAAAAAAACAA---CATTTT-TT---CATCATTT---CTTAGCCTACAGTAGCTACTTGGCATATTAT-AATTCATGTGTGACAGC-GGG--CCAAA-A-AC-CCATAT--------------AA-CA-TTCA--------G--AGGG-A---CAAAA-A---TTGATATTTGAGGGCC--AAA-A-ATCCAAATTAATTATAAGATGTGTTACATTATTT------G-C-------TTTA-AC-AATTA-TCAG---TTAAAA-A-TA----T--AA-CTGCAAACCAATCAATTCA--TATGTATA--CATGAG--CATCCA----ACAACAAC--AGTGCAGCAAC-----TCTTAAACTAACA----GATTCATTG-CTTTCTGAACAACAAAC-TCAGGATTTTA-G--AACATATATCAGGTACAGAAGAGAAG-----ATG-TTGTT--AATGATTTGATTATTCCAATG-ACATCATACAATTT-TTAAAGACA
gi|9 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaatCTACTG---------GGTATAATAA-AAGTCATGTGTGATGGC-AG-----------AT-CCATATG-------------------TCCATATA---CA--AGGGGC---CAAAA-T---TCCATATGCAAGGGAC--AAA-A-CTCGATATTAATTTAAGGCTGTGTAACAGTATTT-T----C-CATTACTATTGA-GCAAATTA-TTAG---T--AAA-A-AAAAAGT--A--CTACAAACCAGTTAACT----CGTATTTACTCTCGCG--CAACCA-ACAACAA-GAG--AG--CAGCGAC-----GGATAAAATGGCAGACG----TATCG-CTTTCTG---AACA-G----------TAA-ACT-----------------GAATAGAA-----AGTTGTTGTTTCAAT---ATG-----CGCACTG-ACACCATGCGATTT-T-GAGGACGTGAATAAAACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGTTGTATTTGTATTTCAATTCTAGTTTTTGTTCTTATATCTTAGAGGAAATATAGGTATGTTGACAACCAGAGTCCAGGATATGTATGCTTGAGTTTGATTGATATTAGCGATATGATACATGTCAACATGTTGACCGATTAATGTAAACACACAATGAGAAAAAATATTATACTTCCTAAACGAAAACTCATAAATTAATCTGGTCCATGGAGTAAATGAAAATACGAATATACCCGTTTGAATTAATTAATAAGAACGTATTCCATAATGGCGTAAATGTGTTTAACGTTGCGCCTTTATAATATCCCGCT
Unaligned ( gi|20 ): ATACATTTATCGTTTTTTTCACAGCTTTTTAAAAGAGAAAATATTATGGACAGATTCCTTGATATGTAATCGCCTGACTATGTAGAGATTTTAGCGACATGAGATACTCTGCCATCATTTTGACTGATATTTGTAA
Alignments
lowQualScore : 111 111 1111111 111111111 66666666666666666666666666 222222222222 1111111 11111111 1 11111 111 1 22222 4444444444 222 22 111111111 222 1 1 1111111111 11 111 1 11111 11 111 2222 22 1
lowQualScore : 1 33 5 111 555 444 1 0 2 5555555 2 1 000000000 2 0 55555555555555555555555555 5555 2 2 8888 33 2 444 2 666 2 2 55 4 33 22 1 555555555555 222 4 3 2 1 444 66 2 8888888 55 77 22 1 0 2 888 33 1 0 33 1 2 2222222 888888 0 1 11111111 1 22 3 4 9 8 1 0 9999 777 3 777 0 11111 0 4 0 111 22 1 1 1 1 77 77 99 33333 1 1 0 8 9 3 8888888888 3 333 44 1 0 777777777 333 1 3 0 1 77 6 0 1 1 1 6666666666 7 3 1 5 2 22 0 3 1 1 1 8 5 00 6 6 444 1 0 222 1 1 0 0 88888 33 000 0000 1 00 3
lowQualScore : . .. . ... ... ... . . . ....... . . ......... . . .......................... .... . . .... .. . ... . ... . . .. . .. .. . ............ ... . . . . ... .. . ....... .. .. .. . . . ... .. . . .. . . ....... ...... . . ........ . .. . . . . . . .... ... . ... . ..... . . . ... .. . . . . .. .. .. ..... . . . . . . .......... . ... .. . . ......... ... . . . . .. . . . . . .......... . . . . . .. . . . . . . . .. . . ... . . ... . . . . ..... .. ... .... . .. .
lowQualScore : 0 33 0 000 444 000 2 1 9 3333333 1 0 777777777 5 9 11111111111111111111111111 0000 1 1 8888 77 4 111 4 555 7 5 66 7 55 55 0 999999999999 000 7 5 4 0 111 55 4 5555555 66 99 00 9 8 4 000 77 9 9 77 1 9 5555555 444444 4 2 55555555 9 33 9 6 4 9 1 8 4444 888 6 111 9 11111 1 4 7 666 11 7 5 7 4 99 77 22 33333 0 4 8 0 2 5 0000000000 7 333 00 0 7 333333333 333 0 3 0 0 77 7 3 0 0 7 3333333333 3 0 4 0 2 88 8 7 4 0 0 9 7 33 7 7 888 5 6 666 0 0 0 2 55555 88 222 0000 0 00 3
consensus : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGC-GGG--C--AA-A-AT-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCTTGGTGCAAATAN-ATTTAG-TTTTAANCTTTAA--A--A-A--CCCCGCTTTGTAAACTNATTTCTAATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
Reference ( family-652 ) : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGC-GGG--C--AA-A-AT-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCNTGGTGCAAATAN-ATTTAG-TTTTAANCNTTAA--A--A-A--CCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
gi|1 : ATGTGTT---ACTATATATAG--TAATAAAATAAGCTTGTTTT-TAGCAT--GATATAGTTTTAGCCTACAG---------GGCATATCAA-ATGTCATGTGTCACGGCAGGG--TAAAA-A-AT-CCATATGTGAGGGC----CAAA-AA-TCCATAT
gi|1 : AGGGCATATCAAA-TG-TC-ATGTGTCACGGCAGGG-T---AAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTCTATGTTATAGTGTTT-T--A-G-TATAAATGATTA-GCAAATTA-TGAA---T--TAA-A-TA----T--A--TGTCAACCCCGTCTATTCG--TGCATTCA--CACGTG--CATCCA-GCAGCGACAAC--TGT-AAGCAAC-----AGTTAAAATGGCAGAAAGAGTCATCGC--TTCTGTCTAGTAGGCTTTTGGATTTAG-AACAACTAATA----GCACAGACTCGAAG---TTACAATTGTACGAATGAAGTG-----CCCACTG-ACACTGTGCAATTTGTGGAAGACATGAAGA-------ATAAAA---ATA-----CC-----AA---ATGCAAAACA--AAAT----ATGATGTGAA---AAAGT----TGTGCGACTGGTTT--------------GGAGAAGACGTTG-GACGATTACACC------ATATCCCATCAATATGCATTTAGGAAGGTTTTT-TCTTGCAAATtaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|1 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacAATTCACTCCTTGGTGCAGGTAA-ATTTAG-TTTTAATCTTTAA--ATAA-A--CCCCGCTTTGTAAACTGATTTCTTATGCACACTGTGTCGTCATGACGTGCATAAACAAAAGAGTGATAACTCCAAGGGAAGTCACTGTATGCTATTTGTTTGAGGGGCAC-ACAA-TGG-GG-TTTATAAAGTGTGATAAATTATATAGATATA-TAAATAAAT---T-AA--AATAA-AAT--G-AAAAAAAAAG-TAAT-TAAaagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|10 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagatTATAGTAACAAAATAAGCTCGTTTT-TTGTAT--GATATAGCTTTAGTCTACAG---------GGCATATTAA-AGGTCTCGTATGTCGA--------------------------GAGGGC----CAAA-AA-TCCATAAA---CG--AGAG-C---CAGAC-A---TCCGTATGTTAGGGCC--AAA-A-ATCCATATTAATGTCCGTCTGTGCTCTAGTGGTT-T--A-G-TATAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--TGACAAACCCGTCTATTCG--CGCACTCA--GACGCG--CTTCTA-ACGACGACAAC--CGT-AAGCATT-----AGTT-AGATAGCAAAAGGTGTCATCGCATCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAAAAG---TAATGATTGTGCAAACGAAGTG-----CCCGCTG-GCACTGTGCAATTTGGCGAAGACATCAAtaaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|11 : -AAATTTACTCCACGGTGTAAATAA-ATTTAGAATTGGACCTTTAA--A--ATA--CCCCGGGGTGT-AACTTATATCTAATCAACTC
gi|11 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaTGTAC-CTGTCAGTTTGTGGGGCAC-TCAG-TGG-GGATAT--GATATCTAACGAA--AAATGCTTTTA-TAAATAACT---TGAA--AATAATAATTAC-ATAAAAGAA--TAATGTAAtactatggcgtgtacctgtcagtttgtggggcactcagtggggatatgatatctaacgaaaaatgcttttataaataacttgaaaataataattacataaaagaataatgtaaaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaaaatttactccacggtgtaaataaatttagaattggacctttaaaataccccggggtgtaacttatatctaatcaactctactatggcgATGGTATAGCCTTTGCCAACTG---------GGCGTATTAC-AATTCACGTGTGATGGC------C--AA-A-TT-ATATATGCCAGTGC----CAAA-AT-TCCaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : gcgttta-AA-TTCACGTG---TG--ATGG-C---CAAATTA---T--ATATGCCAGTGCC--AAA-A-TTCCTAATTTACCAAAGCCTGTATTACAATATTTGT--G-A-TTTTACTGTTCG-GCAAATTA-TCAG---T--AAATA-TA----T--AA-CTTCAAACCAGTCAGTTAG--TATATTTG--CGAGAG--AATCCA-ACGACAACAAC--AAT---GCGACTACTGGGTTAAAATGACAAATG----CATCA-CTTTCTGtaatttaccaaagcctgtattacaatatttgtgattttactgttcggcaaattatcagtaaatatataacttcaaaccagtcagttagtatatttgcgagagaatccaacgacaacaacaatgcgactactgggttaaaatgacaaatgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|14 : gcgtttaatggtatagcctttgccaactgggcgtattacAA-AATTCACGTGAGACGAC-GGGA-C--AA-A-ATATCACAAACGAGGTC----AAAT-GA-TCCATATG--------------------A-A---TT-----------GCC--AAACA-ATCCTTATTGATTAAAGTCTGTGTTACAGT--------------------TTTACGAGAATAA-TTAG---T--AAA-A-CAAA--T--A--GCCCAAACCTACCAATTCG--TACATTTA--CACGTG--CATCCA-ATGACGACAACATTGT--AGCGAA-----GGTTAAAATGACA----GATTAATCGCTCCCCTGaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|15 : ACTTTTTAATATACT-CTCTCTTTATATGTATT----TTATATA----GTAATAGAATAAACTTGTTTT-TTGTAT--------------GTCTACAG---------GGTATATCAA-GAGTCACGTGTGACGGC-GAGC-C--AA-A-AT-CCATATGCGACGAC----C-AA-AA-TCCATATagcaacagatctacggattacactatttatcactcagagaacatgtatttaacgcaagttgccatacatttgacatcatatatttaa
gi|15 : ataatcctcataaacaccttgactagaattataatggcataa----CAAG-AG-TC-ACGTG---TG--ACGG-CGAGCCAAA-A---TCCATATGCGACGACC--AAA-A--TCCATATTAATTATAGGCTGTGTTACAGTGTTT-T--A-C-TA------TTTA-ACTAATTA-TCAA---T--AAA-A--A----TA-A--CCGCAAACCAGTCAATT----CGTATGTA--AGTGCGAACATCCA-ACAACAAtaattataggctgtgttacagtgttttactatttaactaattatcaataaaaataaccgcaaaccagtcaattcgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|16 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctctttatatgtattttatatagtaatagaataaacttgttttttgtatgtctacagggtatat-TTAT---TACATGTATT---ACTATATATAG-----CAAAA---GCTT---TT-TT---TATGATATAGCTTTTGCCTACTT---------GACATATTAA-AGTTCACATGTAACAGT-AGG--A--AACA-CT-CCATATGTGAGGG-----CAAT-AA-TCCATATtccggtaaaaacaa
gi|16 : ttctttaatgtgctgaaacatacagacaaAA-AG-TTCACATG---TA--ACAG-T---AGGAA-ACACTCCATATGTGAGGGC---AAT-A-ATCCATATTAATTATAGGCTGTGTTACAGTG-TT-T--A-C-TATTAGGGCTTA-GC-AATCAGTGAAACCT--AAA-ATTA----TTAA--CGT-AAACCAGTTAATTAG--TATATCGA--CAAGAG--CATCCA-ATGACAACAAC--AGTGCAGCAAtaattataggctgtgttacagtgtttactattagggcttagcaatcagtgaaacctaaaattattaacgtaaaccagttaattagtatatcgacaagagcatccaatgacaacaacagtgcagcaaa
gi|17 : ttctttaatgtgctgaaacatacagacaattattacatgtattactatatatagcaaaagctttttttatgatatagcttttgcctacttgacatattTATAA-ACATT-GCAA----ACATGTATT---ACTA-ATATAAAGTAA--AAATAA-----TTAT-TTGTGTGTGTTATAACCTTAGTCTACTA---------GGCATATTAATAAGTCACGTGCAACAGC-GGGA-T--AA-ACGT-CTATATGCGTGGG------AAACAA-TACACATa
gi|17 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgaGGG-A---TAAAC-G---TCTATATGCGTGGG----AAACA-ATACACATCAATTTCAGGCTG-------GTATT-----------TAAA---------GAA-TA-TTAA---TAAAAA-A-AA----T--A--CCCCAAACcaatttcaggctggtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaacatgtattactaatataaagtaaaaataattatttgtgtgtgttataaccttagtctactaggcatattaataagtcacgtgcaacagcAACTCCAAGGGAAATAACTATCAGCTCTCAGTTTGTGGGGCAC-TCAATTAG-AG-TATTCGAAGTAAAATTCGTTAAAAAGAACTAGCAAATAACTAACT-AATCAAT-A-AAT--G-ATAATAGAAaattgtatttaatatgtaaatatcaaa
gi|19 : tttacgccatagtatatatagatttaactttaagccttaaaagcaacttacttccaaccG---CG--AGGA-C---CAAAA-A---TC-ATATGCGTGGGCCT-AAA-ACATCCATATTAACTATAGAATGTGTTACAGTGTTT-T--A-A-T-------TTTAGGCGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTGAAAACAT--A--CGCAGG--CATCcttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|2 : ACATGTGTT---TCTATTTATAG--TAACGGAATAAGCTT--TTA-TTGTATGT--TATAG---------ACTT---------G--ATATTTA-AA----TGTGTGCTGGT-GAG-------------------------GC----CAAA-AACTCCATATG---AG--AGGG-C---CAAAA-A---TCCATAT
gi|2 : GG-C---CAAAA-AC--TCCATATGAGAGGGCC--AAA-A-ATCCATATCAATTATAGGCTGTGTTGCAGTATTT-TCCATG-AAT-AATGTTAA-GCGGTTTA-TCAG---T--AAA----A----C--A--CCTCAAACCAGTCAATTCGAATGTATTCT--CGAGCA--AA--CA-ATGACAACAATA-GGG-CAGCGA------GGTTAAGATGACAGATG----CATCGcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|2 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaTGGTGTAAATAG-ATTTAA-TTTTGAACCTTAA--A--G-ATACCCCGCTTTGTAA--TT-TTTCTAGTCGACTCCAATATGTCATTACGCGTATAAACG--------------CCAAGGGAA-T-ACTGTACGTTATCAGTTTGAGGGA-AC-TCAG-TGGTGG-TGTTCAAAGTAAGATACGTT-AATAAAatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|21 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgaTATA-TACATT-T-AT---TACATGTGTTGTCACTATATAT--AGTAACGAAATAAGCTTGTCTTGTT-----TGAAACAGC-TTAGCCTACTC---------GGTTTAATAA-AATTCgagcaacaacggagaagaatactgt
gi|22 : ttataaatagaactaaATATGCGTGGGCCTAAAA-A-ATCAATATTAATTAAAGAATGTGTTACATTGTTT------GCTTTTAATCTTTG-GGGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTG--C
gi|23 : ATATCAAG-GAATTCTATAGAGACCATACAAGTCCTTGTCAA--CATGAACAATAAGAAA-----GAAATGAGAAAT-AGAaa
gi|24 : gcgcgcacgcacactctgaaaatatagtca-TTAT---AACATATGCT---ACTCTATATATAGTAACAAAATAAGCTTGTTTA-TT---TATGAT-TAGCGTTAG
gi|25 : tatgcaatgttaTAACTGTACGTTATCAGTTTGAAGGA-AC-TCGG-TGG-GG-TATTCAACGTAAAA
gi|26 : aATATCAAG-GAATTATATAGAG---ATATAAGTCCTTG--gtcgttagaaaaaa
gi|27 : ttaaaagtataatttATAAACAAAAGAGCGATAGCTCCAAGTGAAATAACTGTAt
gi|28 : cctTAT---TACGTGTGTT---AC--TATATAAAGTAACAAAATAA
gi|3 : ACGTCATAATACATT-TTAG---TTCATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGCTTT-TTGTGTATGATATAGCTTTAGTCTACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC-AGGACC--AA-ACAT-CCATGTGCGAGGGC----CAGA-AA-TCCATATG---TG--AGGG-C---CAGAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--A-G-TTTAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--AGACAAACCCGTCTATTCC--GGCACTCA--CGCGCC--CTTCTA-ACGACGACAAC--CGT-TAGCAAC-----AGCCGGA-TGGCAAAAGGAGTCTTCGGCTCTCTGTTTTACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGACTCGAAG---TAATAATTGGGCAAACAAAGTG-----CCCA-TGTACATTGTGCAATTTGTGGAAAGCATCAAGAGAATTATACGGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAAAGCAAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTT-TGTCAA--ATACCATTGGAAGAAC---TGAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCTTGGTGCAAATAC-ATTTAG-TTTTAATCGTT----A--A-A--TCCCGCTTTGTAAACTGATTTCTAATGGACCCCACCTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTACCTGTTTTAGGGGTACGCCA---GA-GA-CAT----AG--ACACAAATAAAGTATGTGTA-CACATAATT---T-AG--AAGCA-TGT--GTAATAAAGAAGTTGAT-TAA
gi|4 : ACATGTGTG---ACTCTATATAGA--AACAAAATAAGCTTGTTAT-TT-TATAT--TATAGCTTTAGCCTACGG---------GACATATTAA-ACGCCACGTGTGACCGC-AGG--C-----------------------C----CAAA-AA-CTCATATG---CG--ACGG-C-----AAA-A---TC-----------------------TCTATA--AATTGTAGGCAGAGTCACAGTATTT-TCCA-A-T---AATATTCA-GCAAATTA-TTCT---T--AAG-A-AA----T--AATCTCTAA------TAATTCG--TT--TTTA--TTCGCG-------A-GCAACAACAG---AG--CAGCGAC-----GATTAAAATGGCA----GACCCATCG-CTTTTTGAACAACACACTCAGGGA-TTAAGACCA--TG-TG----TTACTGAAGAGAAAGCTTATTG-TTGTTT--TTGATATG-----CGCACTT-ACACCTTACAATGT-TTAAAGATATGAATAAAAT
gi|4 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaACTTACGCCATAGTGTAAATAAGATTAAA-TTTTAGACTTTAA--A--ATA--CCCCGCTTTCTAA-CTTATTTCTgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|5 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgccacgtgtgaccgcaggcccaaaaactcatatgcgacggcaaaatctctataaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtTAT---TACATGTGTT---ACTATATA--AAGTAACAAAATAAGCTTGTTTT-TT-TATATGATATAACTTTAGTCAACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC--------------------------AGGGC----CAAA-AA-TCAATATG---TG--AGGG-C---CAGAA-T---TCCATGTGTGAGGGCC--AAA-A-TTCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--C-G-TATAAATGTTTA-GCAAATTA-TGAA---T--GGA-A-TA----T--A--TACCAAACCCGTCTATTCG--CGCAATCA--CACGCA--C-TTCATACGACGACAAC--CGT-TAGCAAC-----AGTTAGA-TGGCAAAAGGAGGCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAT-ACCAACCGGTA----GCACAGAGTAGAAG---TAATGATTGTGCCAACGAAGTG-----CCCACGG-ACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGTATGAAGAATA--AAA-----AAAATGCAAAAC-AAAATCCGTCGTGAAAATGTTTTTGTGCGACTGGCTTGGAGAA---GTTACACCAACTA-A-CGCTGGAAGAAC---TAAATATGCAGTTAGCCTTTTTTTTCTCTCG-CAATTTACTCCTTGGTGCAAGTAT-ATTTAG-TTTTTATCGTTGAATA--A-A--TCCCGCTTTGTAAACTGATTTCTTATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTATCTGTTTTTGGGGTAC-
gi|6 : ACCTTACAGTGTACT-TTATA--TA-ATATATT---ACTATATATAG--TAACAAAATAATCTTGTTTT-TTGCATA--ATATAGTTTTAGCATACCG---------GGCATATTAA-ATGTCACGTTTCACGACAGGG--CCAAA-A-AT-CCATATGCGAGAGC----AAAA-AA-TCCATATG---TG--AGGG-C---CAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTTTGTGTTATAGTGTTT-T--A-G-TATAGATGTTTA-GCGAATTA-TGAA---T--TAA-A-TA----T--A--TGCCAAACCCGTCTATTCG--TGCATTCA--CACATG--CATCCG-ACGGCGACAAC--TGT-CATCAAC-----AGTTAATATGGCAGAAGGAGTCTTCGCCTTTCTGTCTAACAGGCTTTTGGA-TTAAGACCAACTGATA----GCACAGAATTGAAG---TAATAAGTTTACATACAAAGTG-----ACCACTG-ACACTGTGCAGTTTGT-GAAGACATGAAGAg
gi|6 : gtatagttaataagatacgtggctgccaaacaagcaatgAGTTTGTG--AAGACATGAAGAATA--AAAATACCAAAAGGTAAAACAAAAATACGACATGAataaaaataccaaaaggtaaaacaaaaatacgacatga
gi|7 : gtatagttaataagatacgtggctgccaaacaagcaatgaccttacagtgtactttatataatatattactatatatagtaacaaaataatcttgttttttgcataatatagttttagcataccgggcatattaaatgtcacgtttcacgacagggccaaaaatccatatgcgagagcaaaaaatccatatgtgagggccaaaaatccatatgtgagggccaaaaatccatattaatttcagtttgtgttatagtgttttagtatagatgtttagcgaattatgaattaaatatatgccaaacccgtctattcgtgcattcacacatgcatccgacggcgacaactgtcatcaacagttaatatggcagaaggagtcttcgcctttctgtctaacaggcttttggattaagaccaactgatagcacagaattgaagtaataagtttacatacaaagtgaccactgacactgtgcACACATTGTTAT---TACATGTGTT---ACTATATATAT--TAAAAAAGTAAACTTGTTTT-TTGTATA--ATATAGCTTTAGTCTACAG---------GGCATATTAA-AAGTCGCGTGTGAAGAC--------------------------AGGAC----CAAA-AA-ACCATATG---TG--AGGG-C---CAAAA-A---TCCATAT--------C--AA---------------TTTCCGTTTGTGCTCTAGTGTTT-T--A-G-TATAAATGTTTA-GTCAATTA-TGAA---T--GGA-A-TA----T--A--TGCAAAACCTGATTATTTG--CGCACTCA--CAGGTG--CTTCCA-ACTACAAC-GC--TAT-TAGCAAC-----ATTT-AGATGGCAAAAGGAGTCATCGTCTCTCTGTCTAACACGC-TTTGGAG-------CAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACAAAGTG-----CACGTGG-ACACTGTGCAATTTATGGAAGAAATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AA
gi|8 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatAATAAAAAAACAA---CATTTT-TT---CATCATTT---CTTAGCCTACAGTAGCTACTTGGCATATTAT-AATTCATGTGTGACAGC-GGG--CCAAA-A-AC-CCATAT--------------AA-CA-TTCA--------G--AGGG-A---CAAAA-A---TTGATATTTGAGGGCC--AAA-A-ATCCAAATTAATTATAAGATGTGTTACATTATTT------G-C-------TTTA-AC-AATTA-TCAG---TTAAAA-A-TA----T--AA-CTGCAAACCAATCAATTCA--TATGTATA--CATGAG--CATCCA----ACAACAAC--AGTGCAGCAAC-----TCTTAAACTAACA----GATTCATTG-CTTTCTGAACAACAAAC-TCAGGATTTTA-G--AACATATATCAGGTACAGAAGAGAAG-----ATG-TTGTT--AATGATTTGATTATTCCAATG-ACATCATACAATTT-TTAAAGACA
gi|9 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaatCTACTG---------GGTATAATAA-AAGTCATGTGTGATGGC-AG-----------AT-CCATATG-------------------TCCATATA---CA--AGGGGC---CAAAA-T---TCCATATGCAAGGGAC--AAA-A-CTCGATATTAATTTAAGGCTGTGTAACAGTATTT-T----C-CATTACTATTGA-GCAAATTA-TTAG---T--AAA-A-AAAAAGT--A--CTACAAACCAGTTAACT----CGTATTTACTCTCGCG--CAACCA-ACAACAA-GAG--AG--CAGCGAC-----GGATAAAATGGCAGACG----TATCG-CTTTCTG---AACA-G----------TAA-ACT-----------------GAATAGAA-----AGTTGTTGTTTCAAT---ATG-----CGCACTG-ACACCATGCGATTT-T-GAGGACGTGAATAAAACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGTTGTATTTGTATTTCAATTCTAGTTTTTGTTCTTATATCTTAGAGGAAATATAGGTATGTTGACAACCAGAGTCCAGGATATGTATGCTTGAGTTTGATTGATATTAGCGATATGATACATGTCAACATGTTGACCGATTAATGTAAACACACAATGAGAAAAAATATTATACTTCCTAAACGAAAACTCATAAATTAATCTGGTCCATGGAGTAAATGAAAATACGAATATACCCGTTTGAATTAATTAATAAGAACGTATTCCATAATGGCGTAAATGTGTTTAACGTTGCGCCTTTATAATATCCCGCT
Unaligned ( gi|20 ): ATACATTTATCGTTTTTTTCACAGCTTTTTAAAAGAGAAAATATTATGGACAGATTCCTTGATATGTAATCGCCTGACTATGTAGAGATTTTAGCGACATGAGATACTCTGCCATCATTTTGACTGATATTTGTAA
Alignments
lowQualScore : 111 111 1111111 111111111 66666666666666666666666666 222222222222 1111111 11111111 1 11111 111 1 22222 4444444444 222 22 111111111 222 1 1 111 22222 11 111 1 11111 11 111 2222 22 1
lowQualScore : 1 33 5 111 555 444 1 0 2 5555555 2 1 000000000 2 0 55555555555555555555555555 5555 2 2 8888 33 2 444 2 666 2 2 55 4 33 22 1 555555555555 222 4 3 2 1 444 66 2 8888888 55 77 22 1 0 2 888 33 1 0 33 1 2 2222222 888888 0 1 11111111 1 22 3 4 9 8 1 0 9999 777 3 777 0 11111 0 4 0 111 22 1 1 1 1 77 77 99 33333 1 1 0 8 9 3 8888888888 3 333 44 1 0 777777777 333 1 3 0 000 66 5 1 2 0 77 00000 8 1 2 2 22 0 3 1 1 1 8 5 00 6 6 444 1 0 222 1 1 0 0 88888 33 000 0000 1 00 3
lowQualScore : . .. . ... ... ... . . . ....... . . ......... . . .......................... .... . . .... .. . ... . ... . . .. . .. .. . ............ ... . . . . ... .. . ....... .. .. .. . . . ... .. . . .. . . ....... ...... . . ........ . .. . . . . . . .... ... . ... . ..... . . . ... .. . . . . .. .. .. ..... . . . . . . .......... . ... .. . . ......... ... . . . ... .. . . . . .. ..... . . . . .. . . . . . . . .. . . ... . . ... . . . . ..... .. ... .... . .. .
lowQualScore : 0 33 0 000 444 000 2 1 9 3333333 1 0 777777777 5 9 11111111111111111111111111 0000 1 1 8888 77 4 111 4 555 7 5 66 7 55 55 0 999999999999 000 7 5 4 0 111 55 4 5555555 66 99 00 9 8 4 000 77 9 9 77 1 9 5555555 444444 4 2 55555555 9 33 9 6 4 9 1 8 4444 888 6 111 9 11111 1 4 7 666 11 7 5 7 4 99 77 22 33333 0 4 8 0 2 5 0000000000 7 333 00 0 7 333333333 333 0 3 0 000 77 7 0 1 1 99 33333 4 0 5 2 88 8 7 4 0 0 9 7 33 7 7 888 5 6 666 0 0 0 2 55555 88 222 0000 0 00 3
consensus : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGC-GGG--C--AA-A-AT-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCN--TGGTGCAAATAN-ATTTAG-TTTTAANCNTTAA--A--A--ACCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
Reference ( family-652 ) : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGC-GGG--C--AA-A-AT-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCT--TGGTGCAAATAN-ATTTAG-TTTTAANCTTTAA--A--A--ACCCCGCTTTGTAAACTNATTTCTAATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
gi|1 : ATGTGTT---ACTATATATAG--TAATAAAATAAGCTTGTTTT-TAGCAT--GATATAGTTTTAGCCTACAG---------GGCATATCAA-ATGTCATGTGTCACGGCAGGG--TAAAA-A-AT-CCATATGTGAGGGC----CAAA-AA-TCCATAT
gi|1 : AGGGCATATCAAA-TG-TC-ATGTGTCACGGCAGGG-T---AAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTCTATGTTATAGTGTTT-T--A-G-TATAAATGATTA-GCAAATTA-TGAA---T--TAA-A-TA----T--A--TGTCAACCCCGTCTATTCG--TGCATTCA--CACGTG--CATCCA-GCAGCGACAAC--TGT-AAGCAAC-----AGTTAAAATGGCAGAAAGAGTCATCGC--TTCTGTCTAGTAGGCTTTTGGATTTAG-AACAACTAATA----GCACAGACTCGAAG---TTACAATTGTACGAATGAAGTG-----CCCACTG-ACACTGTGCAATTTGTGGAAGACATGAAGA-------ATAAAA---ATA-----CC-----AA---ATGCAAAACA--AAAT----ATGATGTGAA---AAAGT----TGTGCGACTGGTTT--------------GGAGAAGACGTTG-GACGATTACACC------ATATCCCATCAATATGCATTTAGGAAGGTTTTT-TCTTGCAAATtaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|1 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacAATTCACTCCT--TGGTGCAGGTAA-ATTTAG-TTTTAATCTTTAA--ATAA--ACCCCGCTTTGTAAACTGATTTCTTATGCACACTGTGTCGTCATGACGTGCATAAACAAAAGAGTGATAACTCCAAGGGAAGTCACTGTATGCTATTTGTTTGAGGGGCAC-ACAA-TGG-GG-TTTATAAAGTGTGATAAATTATATAGATATA-TAAATAAAT---T-AA--AATAA-AAT--G-AAAAAAAAAG-TAAT-TAAaagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|10 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagatTATAGTAACAAAATAAGCTCGTTTT-TTGTAT--GATATAGCTTTAGTCTACAG---------GGCATATTAA-AGGTCTCGTATGTCGA--------------------------GAGGGC----CAAA-AA-TCCATAAA---CG--AGAG-C---CAGAC-A---TCCGTATGTTAGGGCC--AAA-A-ATCCATATTAATGTCCGTCTGTGCTCTAGTGGTT-T--A-G-TATAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--TGACAAACCCGTCTATTCG--CGCACTCA--GACGCG--CTTCTA-ACGACGACAAC--CGT-AAGCATT-----AGTT-AGATAGCAAAAGGTGTCATCGCATCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAAAAG---TAATGATTGTGCAAACGAAGTG-----CCCGCTG-GCACTGTGCAATTTGGCGAAGACATCAAtaaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|11 : -AAATTTACTCCA--CGGTGTAAATAA-ATTTAGAATTGGACCTTTAA--A--AT-ACCCCGGGGTGT-AACTTATATCTAATCAACTC
gi|11 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaTGTAC-CTGTCAGTTTGTGGGGCAC-TCAG-TGG-GGATAT--GATATCTAACGAA--AAATGCTTTTA-TAAATAACT---TGAA--AATAATAATTAC-ATAAAAGAA--TAATGTAAtactatggcgtgtacctgtcagtttgtggggcactcagtggggatatgatatctaacgaaaaatgcttttataaataacttgaaaataataattacataaaagaataatgtaaaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaaaatttactccacggtgtaaataaatttagaattggacctttaaaataccccggggtgtaacttatatctaatcaactctactatggcgATGGTATAGCCTTTGCCAACTG---------GGCGTATTAC-AATTCACGTGTGATGGC------C--AA-A-TT-ATATATGCCAGTGC----CAAA-AT-TCCaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : gcgttta-AA-TTCACGTG---TG--ATGG-C---CAAATTA---T--ATATGCCAGTGCC--AAA-A-TTCCTAATTTACCAAAGCCTGTATTACAATATTTGT--G-A-TTTTACTGTTCG-GCAAATTA-TCAG---T--AAATA-TA----T--AA-CTTCAAACCAGTCAGTTAG--TATATTTG--CGAGAG--AATCCA-ACGACAACAAC--AAT---GCGACTACTGGGTTAAAATGACAAATG----CATCA-CTTTCTGtaatttaccaaagcctgtattacaatatttgtgattttactgttcggcaaattatcagtaaatatataacttcaaaccagtcagttagtatatttgcgagagaatccaacgacaacaacaatgcgactactgggttaaaatgacaaatgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|14 : gcgtttaatggtatagcctttgccaactgggcgtattacAA-AATTCACGTGAGACGAC-GGGA-C--AA-A-ATATCACAAACGAGGTC----AAAT-GA-TCCATATG--------------------A-A---TT-----------GCC--AAACA-ATCCTTATTGATTAAAGTCTGTGTTACAGT--------------------TTTACGAGAATAA-TTAG---T--AAA-A-CAAA--T--A--GCCCAAACCTACCAATTCG--TACATTTA--CACGTG--CATCCA-ATGACGACAACATTGT--AGCGAA-----GGTTAAAATGACA----GATTAATCGCTCCCCTGaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|15 : ACTTTTTAATATACT-CTCTCTTTATATGTATT----TTATATA----GTAATAGAATAAACTTGTTTT-TTGTAT--------------GTCTACAG---------GGTATATCAA-GAGTCACGTGTGACGGC-GAGC-C--AA-A-AT-CCATATGCGACGAC----C-AA-AA-TCCATATagcaacagatctacggattacactatttatcactcagagaacatgtatttaacgcaagttgccatacatttgacatcatatatttaa
gi|15 : ataatcctcataaacaccttgactagaattataatggcataa----CAAG-AG-TC-ACGTG---TG--ACGG-CGAGCCAAA-A---TCCATATGCGACGACC--AAA-A--TCCATATTAATTATAGGCTGTGTTACAGTGTTT-T--A-C-TA------TTTA-ACTAATTA-TCAA---T--AAA-A--A----TA-A--CCGCAAACCAGTCAATT----CGTATGTA--AGTGCGAACATCCA-ACAACAAtaattataggctgtgttacagtgttttactatttaactaattatcaataaaaataaccgcaaaccagtcaattcgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|16 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctctttatatgtattttatatagtaatagaataaacttgttttttgtatgtctacagggtatat-TTAT---TACATGTATT---ACTATATATAG-----CAAAA---GCTT---TT-TT---TATGATATAGCTTTTGCCTACTT---------GACATATTAA-AGTTCACATGTAACAGT-AGG--A--AACA-CT-CCATATGTGAGGG-----CAAT-AA-TCCATATtccggtaaaaacaa
gi|16 : ttctttaatgtgctgaaacatacagacaaAA-AG-TTCACATG---TA--ACAG-T---AGGAA-ACACTCCATATGTGAGGGC---AAT-A-ATCCATATTAATTATAGGCTGTGTTACAGTG-TT-T--A-C-TATTAGGGCTTA-GC-AATCAGTGAAACCT--AAA-ATTA----TTAA--CGT-AAACCAGTTAATTAG--TATATCGA--CAAGAG--CATCCA-ATGACAACAAC--AGTGCAGCAAtaattataggctgtgttacagtgtttactattagggcttagcaatcagtgaaacctaaaattattaacgtaaaccagttaattagtatatcgacaagagcatccaatgacaacaacagtgcagcaaa
gi|17 : ttctttaatgtgctgaaacatacagacaattattacatgtattactatatatagcaaaagctttttttatgatatagcttttgcctacttgacatattTATAA-ACATT-GCAA----ACATGTATT---ACTA-ATATAAAGTAA--AAATAA-----TTAT-TTGTGTGTGTTATAACCTTAGTCTACTA---------GGCATATTAATAAGTCACGTGCAACAGC-GGGA-T--AA-ACGT-CTATATGCGTGGG------AAACAA-TACACATa
gi|17 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgaGGG-A---TAAAC-G---TCTATATGCGTGGG----AAACA-ATACACATCAATTTCAGGCTG-------GTATT-----------TAAA---------GAA-TA-TTAA---TAAAAA-A-AA----T--A--CCCCAAACcaatttcaggctggtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaacatgtattactaatataaagtaaaaataattatttgtgtgtgttataaccttagtctactaggcatattaataagtcacgtgcaacagcTTTACGCCA--TAGTATATATAG-ATTTAA-CTTTAAGCCTTAA--A--A--GC-----------AACTTACTTCCAACCAACTCCaattgtatttaatatgtaaatatcaaa
gi|18 : AACTCCAAGGGAAATAACTATCAGCTCTCAGTTTGTGGGGCAC-TCAATTAG-AG-TATTCGAAGTAAAATTCGTTAAAAAGAACTAGCAAATAACTAACT-AATCAAT-A-AAT--G-ATAATAGAAaagggaaataactatcagctctcagtttgtggggcactcaattagagtattcgaagtaaaattcgttaaaaagaactagcaaataactaactaatcaataaatgataatagaacttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|19 : tttacgccatagtatatatagatttaactttaagccttaaaagcaacttacttccaaccG---CG--AGGA-C---CAAAA-A---TC-ATATGCGTGGGCCT-AAA-ACATCCATATTAACTATAGAATGTGTTACAGTGTTT-T--A-A-T-------TTTAGGCGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTGAAAACAT--A--CGCAGG--CATCcttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|2 : ACATGTGTT---TCTATTTATAG--TAACGGAATAAGCTT--TTA-TTGTATGT--TATAG---------ACTT---------G--ATATTTA-AA----TGTGTGCTGGT-GAG-------------------------GC----CAAA-AACTCCATATG---AG--AGGG-C---CAAAA-A---TCCATAT
gi|2 : GG-C---CAAAA-AC--TCCATATGAGAGGGCC--AAA-A-ATCCATATCAATTATAGGCTGTGTTGCAGTATTT-TCCATG-AAT-AATGTTAA-GCGGTTTA-TCAG---T--AAA----A----C--A--CCTCAAACCAGTCAATTCGAATGTATTCT--CGAGCA--AA--CA-ATGACAACAATA-GGG-CAGCGA------GGTTAAGATGACAGATG----CATCGcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|2 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaAATTCACCTATGATGGTGTAAATAG-ATTTAA-TTTTGAACCTTAA--A--GATACCCCGCTTTGTAA--TT-TTTCTAGTCGACTCCAATATGTCATTACGCGTATAAACG--------------CCAAGGGAA-T-ACTGTACGTTATCAGTTTGAGGGA-AC-TCAG-TGGTGG-TGTTCAAAGTAAGATACGTT-AATAAAatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|21 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagTATA-TACATT-T-AT---TACATGTGTTGTCACTATATAT--AGTAACGAAATAAGCTTGTCTTGTT-----TGAAACAGC-TTAGCCTACTC---------GGTTTAATAA-AATTCgagcaacaacggagaagaatactgt
gi|22 : ttataaatagaactaaATATGCGTGGGCCTAAAA-A-ATCAATATTAATTAAAGAATGTGTTACATTGTTT------GCTTTTAATCTTTG-GGGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTG--C
gi|23 : ATATCAAG-GAATTCTATAGAGACCATACAAGTCCTTGTCAA--CATGAACAATAAGAAA-----GAAATGAGAAAT-AGAaa
gi|24 : gcgcgcacgcacactctgaaaatatagtca-TTAT---AACATATGCT---ACTCTATATATAGTAACAAAATAAGCTTGTTTA-TT---TATGAT-TAGCGTTAG
gi|25 : tatgcaatgttaTAACTGTACGTTATCAGTTTGAAGGA-AC-TCGG-TGG-GG-TATTCAACGTAAAA
gi|26 : aATATCAAG-GAATTATATAGAG---ATATAAGTCCTTG--gtcgttagaaaaaa
gi|27 : ttaaaagtataatttATAAACAAAAGAGCGATAGCTCCAAGTGAAATAACTGTAt
gi|28 : cctTAT---TACGTGTGTT---AC--TATATAAAGTAACAAAATAA
gi|3 : ACGTCATAATACATT-TTAG---TTCATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGCTTT-TTGTGTATGATATAGCTTTAGTCTACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC-AGGACC--AA-ACAT-CCATGTGCGAGGGC----CAGA-AA-TCCATATG---TG--AGGG-C---CAGAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--A-G-TTTAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--AGACAAACCCGTCTATTCC--GGCACTCA--CGCGCC--CTTCTA-ACGACGACAAC--CGT-TAGCAAC-----AGCCGGA-TGGCAAAAGGAGTCTTCGGCTCTCTGTTTTACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGACTCGAAG---TAATAATTGGGCAAACAAAGTG-----CCCA-TGTACATTGTGCAATTTGTGGAAAGCATCAAGAGAATTATACGGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAAAGCAAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTT-TGTCAA--ATACCATTGGAAGAAC---TGAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCT--TGGTGCAAATAC-ATTTAG-TTTTAATCGTT----A--A--ATCCCGCTTTGTAAACTGATTTCTAATGGACCCCACCTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTACCTGTTTTAGGGGTACGCCA---GA-GA-CAT----AG--ACACAAATAAAGTATGTGTA-CACATAATT---T-AG--AAGCA-TGT--GTAATAAAGAAGTTGAT-TAA
gi|4 : ACATGTGTG---ACTCTATATAGA--AACAAAATAAGCTTGTTAT-TT-TATAT--TATAGCTTTAGCCTACGG---------GACATATTAA-ACGCCACGTGTGACCGC-AGG--C-----------------------C----CAAA-AA-CTCATATG---CG--ACGG-C-----AAA-A---TC-----------------------TCTATA--AATTGTAGGCAGAGTCACAGTATTT-TCCA-A-T---AATATTCA-GCAAATTA-TTCT---T--AAG-A-AA----T--AATCTCTAA------TAATTCG--TT--TTTA--TTCGCG-------A-GCAACAACAG---AG--CAGCGAC-----GATTAAAATGGCA----GACCCATCG-CTTTTTGAACAACACACTCAGGGA-TTAAGACCA--TG-TG----TTACTGAAGAGAAAGCTTATTG-TTGTTT--TTGATATG-----CGCACTT-ACACCTTACAATGT-TTAAAGATATGAATAAAAT
gi|4 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaACTTACGCCA--TAGTGTAAATAAGATTAAA-TTTTAGACTTTAA--A--AT-ACCCCGCTTTCT-AACTTATTTCTgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|5 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgccacgtgtgaccgcaggcccaaaaactcatatgcgacggcaaaatctctataaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtTAT---TACATGTGTT---ACTATATA--AAGTAACAAAATAAGCTTGTTTT-TT-TATATGATATAACTTTAGTCAACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC--------------------------AGGGC----CAAA-AA-TCAATATG---TG--AGGG-C---CAGAA-T---TCCATGTGTGAGGGCC--AAA-A-TTCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--C-G-TATAAATGTTTA-GCAAATTA-TGAA---T--GGA-A-TA----T--A--TACCAAACCCGTCTATTCG--CGCAATCA--CACGCA--C-TTCATACGACGACAAC--CGT-TAGCAAC-----AGTTAGA-TGGCAAAAGGAGGCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAT-ACCAACCGGTA----GCACAGAGTAGAAG---TAATGATTGTGCCAACGAAGTG-----CCCACGG-ACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGTATGAAGAATA--AAA-----AAAATGCAAAAC-AAAATCCGTCGTGAAAATGTTTTTGTGCGACTGGCTTGGAGAA---GTTACACCAACTA-A-CGCTGGAAGAAC---TAAATATGCAGTTAGCCTTTTTTTTCTCTCG-CAATTTACTCCT--TGGTGCAAGTAT-ATTTAG-TTTTTATCGTTGAATA--A--ATCCCGCTTTGTAAACTGATTTCTTATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTATCTGTTTTTGGGGTAC-
gi|6 : ACCTTACAGTGTACT-TTATA--TA-ATATATT---ACTATATATAG--TAACAAAATAATCTTGTTTT-TTGCATA--ATATAGTTTTAGCATACCG---------GGCATATTAA-ATGTCACGTTTCACGACAGGG--CCAAA-A-AT-CCATATGCGAGAGC----AAAA-AA-TCCATATG---TG--AGGG-C---CAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTTTGTGTTATAGTGTTT-T--A-G-TATAGATGTTTA-GCGAATTA-TGAA---T--TAA-A-TA----T--A--TGCCAAACCCGTCTATTCG--TGCATTCA--CACATG--CATCCG-ACGGCGACAAC--TGT-CATCAAC-----AGTTAATATGGCAGAAGGAGTCTTCGCCTTTCTGTCTAACAGGCTTTTGGA-TTAAGACCAACTGATA----GCACAGAATTGAAG---TAATAAGTTTACATACAAAGTG-----ACCACTG-ACACTGTGCAGTTTGT-GAAGACATGAAGAg
gi|6 : gtatagttaataagatacgtggctgccaaacaagcaatgAGTTTGTG--AAGACATGAAGAATA--AAAATACCAAAAGGTAAAACAAAAATACGACATGAataaaaataccaaaaggtaaaacaaaaatacgacatga
gi|7 : gtatagttaataagatacgtggctgccaaacaagcaatgaccttacagtgtactttatataatatattactatatatagtaacaaaataatcttgttttttgcataatatagttttagcataccgggcatattaaatgtcacgtttcacgacagggccaaaaatccatatgcgagagcaaaaaatccatatgtgagggccaaaaatccatatgtgagggccaaaaatccatattaatttcagtttgtgttatagtgttttagtatagatgtttagcgaattatgaattaaatatatgccaaacccgtctattcgtgcattcacacatgcatccgacggcgacaactgtcatcaacagttaatatggcagaaggagtcttcgcctttctgtctaacaggcttttggattaagaccaactgatagcacagaattgaagtaataagtttacatacaaagtgaccactgacactgtgcACACATTGTTAT---TACATGTGTT---ACTATATATAT--TAAAAAAGTAAACTTGTTTT-TTGTATA--ATATAGCTTTAGTCTACAG---------GGCATATTAA-AAGTCGCGTGTGAAGAC--------------------------AGGAC----CAAA-AA-ACCATATG---TG--AGGG-C---CAAAA-A---TCCATAT--------C--AA---------------TTTCCGTTTGTGCTCTAGTGTTT-T--A-G-TATAAATGTTTA-GTCAATTA-TGAA---T--GGA-A-TA----T--A--TGCAAAACCTGATTATTTG--CGCACTCA--CAGGTG--CTTCCA-ACTACAAC-GC--TAT-TAGCAAC-----ATTT-AGATGGCAAAAGGAGTCATCGTCTCTCTGTCTAACACGC-TTTGGAG-------CAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACAAAGTG-----CACGTGG-ACACTGTGCAATTTATGGAAGAAATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AA
gi|8 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatAATAAAAAAACAA---CATTTT-TT---CATCATTT---CTTAGCCTACAGTAGCTACTTGGCATATTAT-AATTCATGTGTGACAGC-GGG--CCAAA-A-AC-CCATAT--------------AA-CA-TTCA--------G--AGGG-A---CAAAA-A---TTGATATTTGAGGGCC--AAA-A-ATCCAAATTAATTATAAGATGTGTTACATTATTT------G-C-------TTTA-AC-AATTA-TCAG---TTAAAA-A-TA----T--AA-CTGCAAACCAATCAATTCA--TATGTATA--CATGAG--CATCCA----ACAACAAC--AGTGCAGCAAC-----TCTTAAACTAACA----GATTCATTG-CTTTCTGAACAACAAAC-TCAGGATTTTA-G--AACATATATCAGGTACAGAAGAGAAG-----ATG-TTGTT--AATGATTTGATTATTCCAATG-ACATCATACAATTT-TTAAAGACA
gi|9 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaatCTACTG---------GGTATAATAA-AAGTCATGTGTGATGGC-AG-----------AT-CCATATG-------------------TCCATATA---CA--AGGGGC---CAAAA-T---TCCATATGCAAGGGAC--AAA-A-CTCGATATTAATTTAAGGCTGTGTAACAGTATTT-T----C-CATTACTATTGA-GCAAATTA-TTAG---T--AAA-A-AAAAAGT--A--CTACAAACCAGTTAACT----CGTATTTACTCTCGCG--CAACCA-ACAACAA-GAG--AG--CAGCGAC-----GGATAAAATGGCAGACG----TATCG-CTTTCTG---AACA-G----------TAA-ACT-----------------GAATAGAA-----AGTTGTTGTTTCAAT---ATG-----CGCACTG-ACACCATGCGATTT-T-GAGGACGTGAATAAAACT
blockSeqs : G AT G A GTC TAG G G GTGTGTG T A TAGCTACTT T AGGACCAAACATCCATGTGCG ATAT C C C . G GAG T CAC C T TA C CA TC T TCCATGAAT ATG C G G G ACC AA T AAAAAG TA AT GA C C AAA CT A AA T T ATTGT TACTGG A AAAGGTGT C TC C T G G C TCAG GCT A GCA ATTAT T GGC AG A C C T TC GG AG ATACC T A A A A TGTGCGACTG C . AC T ATACCAT . G C . TGA AG A C T AT GAT A T C T AT A A A T C G AT T A TCG C TTA C T G AACT TC AAT TAC T GT G
blockSeqs : C GT . . . AAG A . GTGTATG C T . . AGGGCCAAAAATCCATATGCG . . . T . . . . C C C T C A AA C GTGATTTT CTG G A . C . TA . CAAA A A TT A A AAT . G . A . AGTGC A A AAAGGAGT C TT C T G G C . . A GCA . . GTG AA T T T T . GG . . A C . C T TGT T . T C CTAACGC . A . . A A . G C . AT A T C T CC A A A T C . G . . TCA A TAA G C . TG . CA GT T . .
blockSeqs : AC . . . TAG G . GTATGT T A . . GGGACAAAATATCACAAACG . . . T . . . . . C C . . T AA T TAGTATA GGG . G . T . . . TTA . A CC T C C . A . A . AGGGC G A AAAGGAGG G AA C T G . C . . A GCC . . GTG AG T T T T . GA . . T C . A A . A G . A C . AT A T C T CG G A A A T . G . . TCA A TT A G . T . A G A
blockSeqs : A . . . AAG G . TATATG C T . . GGGATAAACGTCTATATGCG . . . T . . . . . T T . . A AT G TACTATT ATG . T . C . . . TA . . CG A A T . G . A . AGTGC G A GAAGGAGT C TC C T G . C . . A ACA . . ATG AG T T T T . GG . . G T . T G . T G . A . G G C G A A A T . G . . G A A T
blockSeqs : T . . . GAG G . GTATG G T . . GAGCCAAAATCCATATGCG . . . C . . . . . C C . . A AT G TAGTTTA ATC . G . G . . . TA . . GT A T T . A . A . CGTA A A AAAGGAGT C TC G T T . C . . A GCA . . TT AA . . T G . . . . A C . A T . A . T G C . A T A . . . . . . .
blockSeqs : . . . AAG G . TATAT T T . . AGGAAACACTCCATATGTG . . . A . . . . . C C . . A TC G TCGTATA ATG . G . T . . . AA . . CC A C C . G . A . CGTT G A AATG T TC C . . . C . . G TTC . . GT G T . T T . T G . A . G . T T . .
blockSeqs : . . . AG G . GCATA T T . . GGGCCAAAAACCCATAT . . . T . . . . . C A . . A AT A TAGTATA ATA . G . C . . . AT . . CA A T T . G . A . CGTT A A GATT . AA A . . . . . . . TT . . TT G
blockSeqs : . . GA G . GTATA T A . . CAAATTATATATGCC . . . C . . . . . C C . . A AT G TAGTATA ATG . G . C . . . AT . . CT A C C . G . T . TGTC A C GATG . . . . . . . . . . T . . T
blockSeqs : . . G G . GTAT T G . . AGATCCATATG . . . T . . . . . C T . . A AA A GCTTTT ATG . G . C . . . TA . . CA C C G . T . A . TATT A A GACC .
blockSeqs : . G T . TATG T A . . AGGC . . . T . . . . . C T . . T TC T TCCAAT ATG . A . G . . . AA . . GA C C T . A . T . AAT T . GATT .
blockSeqs : . G A . TATG C C . . GAG . . . T . . . . . G T . . A GT G TCCATT CTA . A . T . . . TA . . TC C C C . A . A . AGC G . GACG
blockSeqs : . G . . CATC . A . . G . . . C . . . . . C T . . A TC T TACTA A . G . G . . . TA . . AC T T T . A . A . AGC
blockSeqs : T . . TG . A . . . . . . . . . . . . . C . . C TC T TAAT . . C . G . . . TA . . GC A C C . A . . .
blockSeqs : . T . . . . . . . . . . . . . . . . . TC T TA . . A . G . . . TA . . GC A . T . T . .
blockSeqs : . . . . . . . . . . . . . AT G GC . . . . C . . . A . . TG . . C
blockSeqs : . . . . . . . . . . . . TA G . . . . . T . . . A . . TA
blockSeqs : . .
blockSeqs : . .
blockSeqCons : *** AG* GTATG** GGAAAATCCATATGCG********** T*** ** GACG**** AG GG ***** AT***
originalCons : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAGAGTAACAAAATAAGCTTGTTTT-TTGTATATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGC-GGG--C--AA-A-AT-CCATATGCGAGGGC----CAAA-AA-TCCATATG---CG--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGAAGGAGTCATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCN--TGGTGCAAATAN-ATTTAG-TTTTAANCNTTAA--A--A--ACCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
finalCons : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTATATATAAG-TAACAAAATAAGCTTGTTTT-TTGTATG--ATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGCGGAAAATCCATATGCG----------AGGGC----CAAA-AA-TCCATATGT---G--AGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCAGACG----CATCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCN--TGGTGCAAATAN-ATTTAG-TTTTAANCNTTAA--AAT---ACCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGTTGTATTTGTATTTCAATTCTAGTTTTTGTTCTTATATCTTAGAGGAAATATAGGTATGTTGACAACCAGAGTCCAGGATATGTATGCTTGAGTTTGATTGATATTAGCGATATGATACATGTCAACATGTTGACCGATTAATGTAAACACACAATGAGAAAAAATATTATACTTCCTAAACGAAAACTCATAAATTAATCTGGTCCATGGAGTAAATGAAAATACGAATATACCCGTTTGAATTAATTAATAAGAACGTATTCCATAATGGCGTAAATGTGTTTAACGTTGCGCCTTTATAATATCCCGCT
Unaligned ( gi|20 ): ATACATTTATCGTTTTTTTCACAGCTTTTTAAAAGAGAAAATATTATGGACAGATTCCTTGATATGTAATCGCCTGACTATGTAGAGATTTTAGCGACATGAGATACTCTGCCATCATTTTGACTGATATTTGTAA
Alignments
lowQualScore : 111 22 111111111 8888888888888888888888888888 222222222222 1111111 222222222222 1 11111 111 1 22222 4444444444 222 22 111111111 222 1 1 2 11 111 1 11111 11 111 2222 22 1
lowQualScore : 1 33 5 111 555 3 4 11 3 2 44 33 0 1 1 111111111 2 8888888888888888888888888888 2 3 2 2 2 4444 77777 3 4 55 4 2 22 1 555555555555 222 4 3 2 1 444 66 2 8888888 55 77 22 1 0 2 888 33 1 0 33 1 2 2222222 888888 0 1 7777 999999999999 1 22 3 4 9 8 1 0 9999 777 3 777 0 11111 0 4 0 111 22 1 1 1 1 77 77 99 33333 1 1 0 8 9 3 8888888888 3 333 44 1 0 777777777 333 1 3 0 1 77 6 0 1 1 0 3 7 3 1 5 2 22 0 3 1 1 1 8 5 00 6 6 444 1 0 222 1 1 0 0 88888 33 000 0000 1 00 3
lowQualScore : . .. . ... ... . . .. . . .. .. . . . ......... . ............................ . . . . . .... ..... . . .. . . .. . ............ ... . . . . ... .. . ....... .. .. .. . . . ... .. . . .. . . ....... ...... . . .... ............ . .. . . . . . . .... ... . ... . ..... . . . ... .. . . . . .. .. .. ..... . . . . . . .......... . ... .. . . ......... ... . . . . .. . . . . . . . . . . . .. . . . . . . . .. . . ... . . ... . . . . ..... .. ... .... . .. .
lowQualScore : 0 33 0 000 444 1 1 88 0 9 11 77 3 1 0 444444444 9 7777777777777777777777777777 9 6 4 4 5 8888 66666 5 5 66 7 4 55 0 999999999999 000 7 5 4 0 111 55 4 5555555 66 99 00 9 8 4 000 77 9 9 77 1 9 5555555 444444 4 2 1111 444444444444 9 33 9 6 4 9 1 8 4444 888 6 111 9 11111 1 4 7 666 11 7 5 7 4 99 77 22 33333 0 4 8 0 2 5 0000000000 7 333 00 0 7 333333333 333 0 3 0 0 77 7 3 0 0 0 7 3 0 4 0 2 88 8 7 4 0 0 9 7 33 7 7 888 5 6 666 0 0 0 2 55555 88 222 0000 0 00 3
consensus : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTA-TATATA-AGTAACAAAATAAGCTTGTT-TTTT-GT--ATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGCGG-----AAA-A---TCCATATG---CGA-GGGCCAAA-A-ATCCATATGCGAGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCA----GANG----CA----TCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCTTGGTGCAAATAN-ATTTAG-TTTTAANCTTTAAA-ATACCCCGCTTTGTAAACTNATTTCTAATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
Reference ( family-652 ) : ACNTTATAATACATT-TTAT---TACATGTGTT---ACTA-TATATA-AGTAACAAAATAAGCTTGTT-TTTT-GT--ATGATATAGCTTTAGCCTACNG---------GGCATATTAA-AAGTCACGTGTGACGGCGG-----AAA-A---TCCATATG---CGA-GGGCCAAA-A-ATCCATATGTGAGGG-C---CAAAA-A---TCCATATGCGAGGGCC--AAA-A-ATCCATATTAATTNCAGNCTGTGTTACAGTGTTT-T--A-G-TATAAATGTTTA-GCGAATTA-TNAG---T--AAA-A-TA----T--A--CNNCAAACCNGTCAATTCG--CGCATTCA--CGCGCG--CATCCA-ACGACGACAAC--NGT-CAGCGAC-----GGTTAAAATGGCA----GACG----CA----TCGCCTCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACGAAGTG-----CCCACTG-ACACCGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAATGCGAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTTGCGNCGACTACACCGCTGGAAGAAC---TNAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCNTGGTGCAAATAN-ATTTAG-TTTTAANCNTTAAA-ATACCCCGCTTTGTAAACTTATTTCTAATCGACTCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCCAAGGGAAGTAACTGTACGCTATCNGTTTGNGGGGCAC-TCAG-TGG-GG-TATTCGAAGTAAAATAAATTAAATANATNTA-CAAATAACT---T-AA--AATAA-AAT--G-ANAAAAGAAG-TAAT-TAA
gi|1 : ATGTGTT---ACTA-TATATA--GTAATAAAATAAGCTTGTT-TTTA-GC--ATGATATAGTTTTAGCCTACAG---------GGCATATCAA-ATGTCATGTGTCACGGC----------------------------A-GGGTAAAA-A-ATCCATATGT-----------------------------GAGGGCC--AAA-A-ATCCATATTAATTTCAGTCTATGTTATAGTGTTT-T--A-G-TATAAATGATTA-GCAAATTA-TGAA---T--TAA-A-TA----T--A--TGTCAACCCCGTCTATTCG--TGCATTCA--CACGTG--CATCCA-GCAGCGACAAC--TGT-AAGCAAC-----AGTTAAAATGGCA----GAAAGAGTCA----TCGC--TTCTGTCTAGTAGGCTTTTGGATTTAG-AACAACTAATA----GCACAGACTCGAAG---TTACAATTGTACGAATGAAGTG-----CCCACTG-ACACTGTGCAATTTGTGGAAGACATGAAGA-------ATAAAA---ATA-----CC-----AA---ATGCAAAACA--AAAT----ATGATGTGAA---AAAGT----TGTGCGACTGGTTT--------------GGAGAAGACGTTG-GACGATTACACC------ATATCCCATCAATATGCATTTAGGAAGGTTTTT-TCTTGCAAAT
gi|1 : AATTCACTCCTTGGTGCAGGTAA-ATTTAG-TTTTAATCTTTAAATAAACCCCGCTTTGTAAACTGATTTCTTATGCACACTGTGTCGTCATGACGTGCATAAACAAAAGAGTGATAACTCCAAGGGAAGTCACTGTATGCTATTTGTTTGAGGGGCAC-ACAA-TGG-GG-TTTATAAAGTGTGATAAATTATATAGATATA-TAAATAAAT---T-AA--AATAA-AAT--G-AAAAAAAAAG-TAAT-TAAaagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagataattcactccttggtgcaggtaaatttagttttaatctttaaataaaccccgctttgtaaactgatttcttatgcacactgtgtcgtcatgacgtgcataaacaaaagagtgataactccaagggaagtcactgtatgctatttgtttgaggggcacacaatggggtttataaagtgtgataaattatatagatatataaataaattaaaataaaatgaaaaaaaaagtaattaataaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|10 : atgtgttactatatatagtaataaaataagcttgtttttagcatgatatagttttagcctacagggcatatcaaatgtcatgtgtcacggcagggtaaaaaatccatatgtgagggccaaaaatccatattaatttcagtctatgttatagtgttttagtataaatgattagcaaattatgaattaaatatatgtcaaccccgtctattcgtgcattcacacgtgcatccagcagcgacaactgtaagcaacagttaaaatggcagaaagagtcatcgcttctgtctagtaggcttttggatttagaacaactaatagcacagactcgaagttacaattgtacgaatgaagtgcccactgacactgtgcaatttgtggaagacatgaagaataaaaataccaaatgcaaaacaaaatatgatgtgaaaaagttgtgcgactggtttggagaagacgttggacgattacaccatatcccatcaatatgcatttaggaaggttttttcttgcaaataagaaaaatgatggagatgattatgagcctgatacattgaagtgtattcacctgagcttgcagaaacatttgagcgacatgaaccatccctttaacattttgacagatcaacaattcaaatactccaggggcgtccttttatagaaacgaaagttattgaaacaatctggttgggaaaacaaaagaggaagagcggatcctttcacagatgaagagattgaaattctaaaagatTATA--GTAACAAAATAAGCTCGTT-TTTT-GT--ATGATATAGCTTTAGTCTACAG---------GGCATATTAA-AGGTCTCGTATGTCGA----------------------------GA-GGGCCAAA-A-ATCCATAAACGAGAG-C---CAGAC-A---TCCGTATGTTAGGGCC--AAA-A-ATCCATATTAATGTCCGTCTGTGCTCTAGTGGTT-T--A-G-TATAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--TGACAAACCCGTCTATTCG--CGCACTCA--GACGCG--CTTCTA-ACGACGACAAC--CGT-AAGCATT-----AGTT-AGATAGCA----AAAGGTGTCA----TCGCATCTCTGTCTAACACGCTTTTGGAGTTAA-ACCAACCGATA----GCACAGAATAAAAG---TAATGATTGTGCAAACGAAGTG-----CCCGCTG-GCACTGTGCAATTTGGCGAAGACATCAAtaaaattgataatctcacaaagaaacacaaacaaacagtacttaataaataaatcgataaatcaacaaaaagaaa
gi|11 : -AAATTTACTCCACGGTGTAAATAA-ATTTAGAATTGGACCTTTAAA-ATACCCCGGGGTGT-AACTTATATCTAATCAACTC
gi|11 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaTGTAC-CTGTCAGTTTGTGGGGCAC-TCAG-TGG-GGATAT--GATATCTAACGAA--AAATGCTTTTA-TAAATAACT---TGAA--AATAATAATTAC-ATAAAAGAA--TAATGTAAtactatggcgtgtacctgtcagtttgtggggcactcagtggggatatgatatctaacgaaaaatgcttttataaataacttgaaaataataattacataaaagaataatgtaaaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : tattaaagaaacatcctactgtctaaagcgaaaagaggctatgaaataaatgaaaatgagtaccagatcctattaaaggcccgattagatcctattaaaaatttactccacggtgtaaataaatttagaattggacctttaaaataccccggggtgtaacttatatctaatcaactctactatggcg--ATGGTATAGCCTTTGCCAACTG---------GGCGTATTAC-AATTCACGTGTGATGGC-C-----AAA-T---TATATATG---CCA-GTGCCAAA-A-TTCCaaattgaatatatctaaaaagatcttaatacatctcaatatttaatat
gi|12 : gcgttta-A-ATTCACGTGTGATGG-C---CAAATTA---T--ATATGCCAGTGCC--AAA-A-TTCCTAATTTACCAAAGCCTGTATTACAATATTTGT--G-A-TTTTACTGTTCG-GCAAATTA-TCAG---T--AAATA-TA----T--AA-CTTCAAACCAGTCAGTTAG--TATATTTG--CGAGAG--AATCCA-ACGACAACAAC--AAT---GCGACTACTGGGTTAAAATGACA----AATG----CA----TCA-CTTTCTGtaatttaccaaagcctgtattacaatatttgtgattttactgttcggcaaattatcagtaaatatataacttcaaaccagtcagttagtatatttgcgagagaatccaacgacaacaacaatgcgactactgggttaaaatgacaaatgcatcactttctgaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|14 : gcgtttaatggtatagcctttgccaactgggcgtattac-----AAA-A---TTCACGTGAGACGACGGGACAAA-ATATC-ACAAACGAGGT-C---AAATG-A---TCCATATG-AATTGCC--AAACA-ATCCTTATTGATTAAAGTCTGTGTTACAGT--------------------TTTACGAGAATAA-TTAG---T--AAA-A-CAAA--T--A--GCCCAAACCTACCAATTCG--TACATTTA--CACGTG--CATCCA-ATGACGACAACATTGT--AGCGAA-----GGTTAAAATGACA----GATT----AA----TCGCTCCCCTGaacgacagactccggcatttaaccatttattatttgggagaacgcttggtgttgttgacgatatcatttgtcaatga
gi|15 : ACTTTTTAATATACT-CTCTCTTTATATGTATT----TTA-TATA----GTAATAGAATAAACTTGTT-TTTT-GT--ATG------------TCTACAG---------GGTATATCAA-GAGTCACGTGTGACGGCGAGCC--AAA-A---TCCATATG---CGA-CGACC-AA-A-ATCCATATagcaacagatctacggattacactatttatcactcagagaacatgtatttaacgcaagttgccatacatttgacatcatatatttaa
gi|15 : ataatcctcataaacaccttgactagaattataatggcataaCAAG-A-GTC-ACGTGTGACGG-CGAGCCAAA-A---TCCATATGCGACGACC--AAA-A--TCCATATTAATTATAGGCTGTGTTACAGTGTTT-T--A-C-TA------TTTA-ACTAATTA-TCAA---T--AAA-A--A----TA-A--CCGCAAACCAGTCAATT----CGTATGTA--AGTGCGAACATCCA-ACAACAAtaattataggctgtgttacagtgttttactatttaactaattatcaataaaaataaccgcaaaccagtcaattcgtatgtaagtgcgaacatccaacaacaatccggtaaaaacaa
gi|16 : ataatcctcataaacaccttgactagaattataatggcataaactttttaatatactctctctttatatgtattttatatagtaatagaataaacttgttttttgtatgtctacagggtatat-TTAT---TACATGTATT---ACTA-TATATA-G----CAAAA-------GCT-TTTT-TT--ATGATATAGCTTTTGCCTACTT---------GACATATTAA-AGTTCACATGTAACAGTAG-----GAA-ACACTCCATATG---TGA-GGG-CAAT-A-ATCCATATtccggtaaaaacaa
gi|16 : ttctttaatgtgctgaaacatacagacaaAA-A-GTTCACATGTAACAG-T---AGGAA-ACACTCCATATGTGAGGGC---AAT-A-ATCCATATTAATTATAGGCTGTGTTACAGTG-TT-T--A-C-TATTAGGGCTTA-GC-AATCAGTGAAACCT--AAA-ATTA----TTAA--CGT-AAACCAGTTAATTAG--TATATCGA--CAAGAG--CATCCA-ATGACAACAAC--AGTGCAGCAAtaattataggctgtgttacagtgtttactattagggcttagcaatcagtgaaacctaaaattattaacgtaaaccagttaattagtatatcgacaagagcatccaatgacaacaacagtgcagcaaa
gi|17 : ttctttaatgtgctgaaacatacagacaattattacatgtattactatatatagcaaaagctttttttatgatatagcttttgcctacttgacatattTATAA-ACATT-GCAA----ACATGTATT---ACTAATATA-A-AGTAA--AAATAA--TTATT-TGT--GT--GTGTTATAACCTTAGTCTACTA---------GGCATATTAATAAGTCACGTGCAACAGCGGGAT--AAACG---TCTATATG---CGT-GGG--AAACA-ATACACATa
gi|17 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgaGGG-A---TAAAC-G---TCTATATGCGTGGG----AAACA-ATACACATCAATTTCAGGCTG-------GTATT-----------TAAA---------GAA-TA-TTAA---TAAAAA-A-AA----T--A--CCCCAAACcaatttcaggctggtatttaaagaatattaataaaaaaaataccccaaacaattgtatttaatatgtaaatatcaaa
gi|18 : taatcatctaaatattaataaccttagattgataattacaataaccaaaattgatataaacattgcaaacatgtattactaatataaagtaaaaataattatttgtgtgtgttataaccttagtctactaggcatattaataagtcacgtgcaacagcAACTCCAAGGGAAATAACTATCAGCTCTCAGTTTGTGGGGCAC-TCAATTAG-AG-TATTCGAAGTAAAATTCGTTAAAAAGAACTAGCAAATAACTAACT-AATCAAT-A-AAT--G-ATAATAGAAaattgtatttaatatgtaaatatcaaa
gi|19 : tttacgccatagtatatatagatttaactttaagccttaaaagcaacttacttccaaccGCGAGGA-C---CAAAA-A---TC-ATATGCGTGGGCCT-AAA-ACATCCATATTAACTATAGAATGTGTTACAGTGTTT-T--A-A-T-------TTTAGGCGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTGAAAACAT--A--CGCAGG--CATCcttaatagtctaaatacattaaaaatattatattaattcatttttatattttat
gi|2 : ACATGTGTT---TCTA-TTTATA--GTAACGGAATAAGCTT--T-TATT-GT--ATGTTATAG
gi|2 : GTGAGG--C---CAAAA-AC--TCCATATGAGAGGGCC--AAA-A-ATCCATATCAATTATAGGCTGTGTTGCAGTATTT-TCCATG-AAT-AATGTTAA-GCGGTTTA-TCAG---T--AAA----A----C--A--CCTCAAACCAGTCAATTCGAATGTATTCT--CGAGCA--AA--CA-ATGACAACAATA-GGG-CAGCGA------GGTTAAGATGACA----GATG----CA----TCGacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|2 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctgTGGTGTAAATAG-ATTTAA-TTTTGAACCTTAAAGATACCCCGCTTTGTAA--TT-TTTCTAGTCGACTCCAATATGTCATTACGCGTATAAACG--------------CCAAGGGAA-T-ACTGTACGTTATCAGTTTGAGGGA-AC-TCAG-TGGTGG-TGTTCAAAGTAAGATACGTT-AATAAAatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgatggtgtaaatagatttaattttgaaccttaaagataccccgctttgtaatttttctagtcgactccaatatgtcattacgcgtataaacgccaagggaatactgtacgttatcagtttgagggaactcagtggtggtgttcaaagtaagatacgttaataaagagcaacaacggagaagaatactgt
gi|21 : acatgtgtttctatttatagtaacggaataagcttttattgtatgttatagacttgatatttaaatgtgtgctggtgaggccaaaaactccatatgagagggccaaaaatccatatcaattataggctgtgttgcagtattttccatgaataatgttaagcggtttatcagtaaaacacctcaaaccagtcaattcgaatgtattctcgagcaaacaatgacaacaatagggcagcgaggttaagatgacagatgcatcgatttcagaacaataaacgtgattaagaccatgtaatactgaatagaaaacttgttatacttgagtgggcacttttggagacatggatacaattacttattcactgatactaaaaagcataaataaaatatgactagaagaaagttcgcgacagtctgtgagaataacggttacaattgtatttcaatcaaacctgcggtttaaacacgcatttatccgattttgtccagtgttttcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacctattaagaagagatagtctacttcctaaacgaaaaatcctaaatcagtcggatccgttatgcaaatgaaacgatgaatagatcgtactgaaagtattaacaagaattcacctatgaTATA-TACATT-T-AT---TACATGTGTTGTCACTA-TATATA--GTAACGAAATAAGCTTG---TCTT-GT--TTGAAACAGC-TTAGCCTACTC---------GGTTTAATAA-AATTCgagcaacaacggagaagaatactgt
gi|22 : ttataaatagaactaaATATGCGTGGGCCTAAAA-A-ATCAATATTAATTAAAGAATGTGTTACATTGTTT------GCTTTTAATCTTTG-GGGAATTA-TCAG---T--AAA-A-AT----T--A--CCACAAGCCAGCCATTTTG--C
gi|23 : ATATCAAG-GAATTCTATAGAGACCATACAAGTCCTTGTCAA--CATGAACAATAAGAAA-----GAAATGAGAAAT-AGAaa
gi|24 : gcgcgcacgcacactctgaaaatatagtca-TTAT---AACATATGCT---ACTC-TATATATAGTAACAAAATAAGCTTGTT-TATT--T--ATGAT-TAGCGTTAG
gi|25 : tatgcaatgttaTAACTGTACGTTATCAGTTTGAAGGA-AC-TCGG-TGG-GG-TATTCAACGTAAAA
gi|26 : aATATCAAG-GAATTATATAGAG---ATATAAGTCCTTG--gtcgttagaaaaaa
gi|27 : ttaaaagtataatttATAAACAAAAGAGCGATAGCTCCAAGTGAAATAACTGTAt
gi|28 : cctTAT---TACGTGTGTT---ACTA-TATA-A-AGTAACAAAATAA
gi|3 : ACGTCATAATACATT-TTAG---TTCATGTGTT---ACTA-TATATAGAGTAACAAAATAAGCTTGCT-TTTT-GTGTATGATATAGCTTTAGTCTACAG---------GTCATATTAA-AAGTCGCGTGTGACGACAGGACC-AAACA---TCCATGTG---CGA-GGGCCAGA-A-ATCCATATGTGAGGG-C---CAGAA-A---ACCATATGTGAGGGCC--AAA-A-ATCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--A-G-TTTAAATGTTTA-GCGAATTA-TGAA---T--GGA-A-TA----T--A--AGACAAACCCGTCTATTCC--GGCACTCA--CGCGCC--CTTCTA-ACGACGACAAC--CGT-TAGCAAC-----AGCCGGA-TGGCA----AAAG----GAGTCTTCGGCTCTCTGTTTTACACGCTTTTGGAGTTAA-ACCAACTGATA----GCACAGACTCGAAG---TAATAATTGGGCAAACAAAGTG-----CCCA-TGTACATTGTGCAATTTGTGGAAAGCATCAAGAGAATTATACGGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AAAAAGCAAAAC-AAAATACGACGTGAAAATGTTTTTGT-------GCTCGGAGAA---GTT-TGTCAA--ATACCATTGGAAGAAC---TGAATATGCATTTAGCCTGTTTTTT-TCTCG-AAATTTACTCCTTGGTGCAAATAC-ATTTAG-TTTTAATCGTTAA----ATCCCGCTTTGTAAACTGATTTCTAATGGACCCCACCTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTACCTGTTTTAGGGGTACGCCA---GA-GA-CAT----AG--ACACAAATAAAGTATGTGTA-CACATAATT---T-AG--AAGCA-TGT--GTAATAAAGAAGTTGAT-TAA
gi|4 : ACATGTGTG---ACTC-TATATA--GAAACAAAATAAGCTTGTTATTTT-AT--AT--TATAGCTTTAGCCTACGG---------GACATATTAA-ACGCCACGTGTGACCGC----------------------------A-GGCCCAAA-A-ACTCATATGCGACGG-C-----AAA-A---TC-----------------------TCTATA--AATTGTAGGCAGAGTCACAGTATTT-TCCA-A-T---AATATTCA-GCAAATTA-TTCT---T--AAG-A-AA----T--AATCTCTAA------TAATTCG--TT--TTTA--TTCGCG-------A-GCAACAACAG---AG--CAGCGAC-----GATTAAAATGGCA----GACC----CA----TCG-CTTTTTGAACAACACACTCAGGGA-TTAAGACCA--TG-TG----TTACTGAAGAGAAAGCTTATTG-TTGTTT--TTGATATG-----CGCACTT-ACACCTTACAATGT-TTAAAGATATGAATAAAAT
gi|4 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaACTTACGCCATAGTGTAAATAAGATTAAA-TTTTAGACTTTAAA-ATACCCCGCTTTCT-AACTTATTTCTgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtacttacgccatagtgtaaataagattaaattttagactttaaaataccccgctttctaacttatttct
gi|5 : atattacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnctgatatatcaatgtcaacatgtgtgactctatatagaaacaaaataagcttgttattttatattatagctttagcctacgggacatattaaacgccacgtgtgaccgcaggcccaaaaactcatatgcgacggcaaaatctctataaattgtaggcagagtcacagtattttccaataatattcagcaaattattcttaagaaataatctctaataattcgtttttattcgcgagcaacaacagagcagcgacgattaaaatggcagacccatcgctttttgaacaacacactcagggattaagaccatgtgttactgaagagaaagcttattgttgtttttgatatgcgcacttacaccttacaatgtttaaagatatgaataaaatgcttaaaataaaaacaaaatagatctatgacatgcggaaagtaggcgactgactgaaataataatgttgggcggctgcatttatttttgcattcaatcggcgggtttatactctattctcgcattttagagacaagatggaacaaattctttaataggtattcgtctgaacttatagagatatttgtaacacgagatattctgccaacatttcgaccgataaatgcaaacacacattagtattaaacgaacacttttaaacccattaatcctatggacttaataaacagatggacgtattctattgaaatgattatcaagtTAT---TACATGTGTT---ACTA-TATA-A-AGTAACAAAATAAGCTTGTT-TTTTTAT--ATGATATAACTTTAGTCAACAG---------GTCATATTAA-AAGTCGCGTGTGACGAC----------------------------A-GGGCCAAA-A-ATCAATATGTGAGGG-C---CAGAA-T---TCCATGTGTGAGGGCC--AAA-A-TTCCATATCAATTTCCGTCTGTGCTCTAGTGTTT-T--C-G-TATAAATGTTTA-GCAAATTA-TGAA---T--GGA-A-TA----T--A--TACCAAACCCGTCTATTCG--CGCAATCA--CACGCA--C-TTCATACGACGACAAC--CGT-TAGCAAC-----AGTTAGA-TGGCAAAAGGAGG----CA----TCGCCTCTCTGTCTAACACGCTTTTGGAGTTAT-ACCAACCGGTA----GCACAGAGTAGAAG---TAATGATTGTGCCAACGAAGTG-----CCCACGG-ACACTGTGCAATTTGTGGAAGACATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGTATGAAGAATA--AAA-----AAAATGCAAAAC-AAAATCCGTCGTGAAAATGTTTTTGTGCGACTGGCTTGGAGAA---GTTACACCAACTA-A-CGCTGGAAGAAC---TAAATATGCAGTTAGCCTTTTTTTTCTCTCG-CAATTTACTCCTTGGTGCAAGTAT-ATTTAG-TTTTTATCGTTGAATAAATCCCGCTTTGTAAACTGATTTCTTATGGACCCCGCGTCGTCATGACGCGCATAAACAAAAGAGCGATAACTCAAAGGGAAGTAACTGTACGCTATCTGTTTTTGGGGTAC-
gi|6 : ACCTTACAGTGTACT-TTATA--TA-ATATATT---ACTA-TATATA--GTAACAAAATAATCTTGTT-TTTT-GC--ATAATATAGTTTTAGCATACCG---------GGCATATTAA-ATGTCACGTTTCACGACAGGGCCAAAA-A---TCCATATG---CGA-GAGCAAAA-A-ATCCATATGTGAGGG-C---CAAAA-A---TCCATATGTGAGGGCC--AAA-A-ATCCATATTAATTTCAGTTTGTGTTATAGTGTTT-T--A-G-TATAGATGTTTA-GCGAATTA-TGAA---T--TAA-A-TA----T--A--TGCCAAACCCGTCTATTCG--TGCATTCA--CACATG--CATCCG-ACGGCGACAAC--TGT-CATCAAC-----AGTTAATATGGCA----GAAG----GAGTCTTCGCCTTTCTGTCTAACAGGCTTTTGGA-TTAAGACCAACTGATA----GCACAGAATTGAAG---TAATAAGTTTACATACAAAGTG-----ACCACTG-ACACTGTGCAGTTTGT-GAAGACATGAAGAg
gi|6 : gtatagttaataagatacgtggctgccaaacaagcaatgAGTTTGTG--AAGACATGAAGAATA--AAAATACCAAAAGGTAAAACAAAAATACGACATGAataaaaataccaaaaggtaaaacaaaaatacgacatga
gi|7 : gtatagttaataagatacgtggctgccaaacaagcaatgaccttacagtgtactttatataatatattactatatatagtaacaaaataatcttgttttttgcataatatagttttagcataccgggcatattaaatgtcacgtttcacgacagggccaaaaatccatatgcgagagcaaaaaatccatatgtgagggccaaaaatccatatgtgagggccaaaaatccatattaatttcagtttgtgttatagtgttttagtatagatgtttagcgaattatgaattaaatatatgccaaacccgtctattcgtgcattcacacatgcatccgacggcgacaactgtcatcaacagttaatatggcagaaggagtcttcgcctttctgtctaacaggcttttggattaagaccaactgatagcacagaattgaagtaataagtttacatacaaagtgaccactgacactgtgcACACATTGTTAT---TACATGTGTT---ACTA-TATATA--TTAAAAAAGTAAACTTGTT-TTTT-GT--ATAATATAGCTTTAGTCTACAG---------GGCATATTAA-AAGTCGCGTGTGAAGAC----------------------------A-GGACCAAA-A-AACCATATGT-----------------------------GAGGGCC--AAA-A-ATCCATATCAATTTCCGTTTGTGCTCTAGTGTTT-T--A-G-TATAAATGTTTA-GTCAATTA-TGAA---T--GGA-A-TA----T--A--TGCAAAACCTGATTATTTG--CGCACTCA--CAGGTG--CTTCCA-ACTACAAC-GC--TAT-TAGCAAC-----ATTT-AGATGGCA----AAAGGAGTCA----TCGTCTCTCTGTCTAACACGC-TTTGGAG-------CAACTGATA----GCACAGAATAGAAG---TAATGATTGTGCAAACAAAGTG-----CACGTGG-ACACTGTGCAATTTATGGAAGAAATCAAGAGAATTATATAGAGTCTATATAAGTCCTTG--AAGGCATGAAGAATA--AAA-----AA
gi|8 : tatttaattacttaactcttacctttattaatacaagtaaccaacaaatATA-A-TAAAAAAACAA---CATT-TTTT--C--ATCATTT---CTTAGCCTACAGTAGCTACTTGGCATATTAT-AATTCATGTGTGACAGCGGGCCA-AAA-A---CCCATAT--------------AA-C-ATTCA-----GAGGG-A---CAAAA-A---TTGATATTTGAGGGCC--AAA-A-ATCCAAATTAATTATAAGATGTGTTACATTATTT------G-C-------TTTA-AC-AATTA-TCAG---TTAAAA-A-TA----T--AA-CTGCAAACCAATCAATTCA--TATGTATA--CATGAG--CATCCA----ACAACAAC--AGTGCAGCAAC-----TCTTAAACTAACA----GATT----CA----TTG-CTTTCTGAACAACAAAC-TCAGGATTTTA-G--AACATATATCAGGTACAGAAGAGAAG-----ATG-TTGTT--AATGATTTGATTATTCCAATG-ACATCATACAATTT-TTAAAGACA
gi|9 : tacaattggtaataatgttttgtcaaacaaaatataaatataaattgtatgttatttaaaagcgcacacaCTACTG---------GGTATAATAA-AAGTCATGTGTGATGGCAG-----A-------TCCATATG-------------------TCCATATACAAGGGGC---CAAAA-T---TCCATATGCAAGGGAC--AAA-A-CTCGATATTAATTTAAGGCTGTGTAACAGTATTT-T----C-CATTACTATTGA-GCAAATTA-TTAG---T--AAA-A-AAAAAGT--A--CTACAAACCAGTTAACT----CGTATTTACTCTCGCG--CAACCA-ACAACAA-GAG--AG--CAGCGAC-----GGATAAAATGGCA----GACG----TA----TCG-CTTTCTG---AACA-G----------TAA-ACT-----------------GAATAGAA-----AGTTGTTGTTTCAAT---ATG-----CGCACTG-ACACCATGCGATTT-T-GAGGACGTGAATAAAACT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGTTGTATTTGTATTTCAATTCTAGTTTTTGTTCTTATATCTTAGAGGAAATATAGGTATGTTGACAACCAGAGTCCAGGATATGTATGCTTGAGTTTGATTGATATTAGCGATATGATACATGTCAACATGTTGACCGATTAATGTAAACACACAATGAGAAAAAATATTATACTTCCTAAACGAAAACTCATAAATTAATCTGGTCCATGGAGTAAATGAAAATACGAATATACCCGTTTGAATTAATTAATAAGAACGTATTCCATAATGGCGTAAATGTGTTTAACGTTGCGCCTTTATAATATCCCGCT
Unaligned ( gi|20 ): ATACATTTATCGTTTTTTTCACAGCTTTTTAAAAGAGAAAATATTATGGACAGATTCCTTGATATGTAATCGCCTGACTATGTAGAGATTTTAGCGACATGAGATACTCTGCCATCATTTTGACTGATATTTGTAA