lowQualScore : 1 999999999999999 111 111 111 2 111111 11 1 22222 22 5555555555 11 1111 111 111 333333333333 3333333 111111 3333333 1 5555555555555555555555555555555 1 1111 1111 33333333 888888888888888888888888888888888888888888888888888888888888888888888888 1111 11111 444444 11 222222222 11111 333
lowQualScore : 0 222222222222222 6 111 111 333 7 0 888888 7777 3 2 6 5 66 22 0 33 7 11 33333 00 0000000000 1 00 4444 111 4 000 555555555555 6666666 999999 1111111 6 2 4444444444444444444444444444444 1 5 7 2222 55 3 8888 5 33 1 5 44444444 6666 1 444444444444444444444444444444444444444444444444444444444444444444444444 1 0 0000 1 8 22222 5 5 3 4 22 555 1 222222 2 4 00 8 666 1 9 333333333 8 9 22222 4 9 0 7 6 2 000
lowQualScore : . ............... . ... ... ... . . ...... .... . . . . .. .. . .. . .. ..... .. .......... . .. .... ... . ... ............ ....... ...... ....... . . ............................... . . . .... .. . .... . .. . . ........ .... . ........................................................................ . . .... . . ..... . . . . .. ... . ...... . . .. . ... . . ......... . . ..... . . . . . . ...
lowQualScore : 5 111111111111111 7 777 777 666 8 8 555555 1111 6 5 6 4 33 44 7 99 1 44 11111 88 5555555555 7 33 2222 555 3 000 444444444444 5555555 222222 8888888 0 2 2222222222222222222222222222222 4 7 1 1111 99 9 3333 7 66 7 7 00000000 9999 7 444444444444444444444444444444444444444444444444444444444444444444444444 6 5 6666 4 8 55555 4 4 9 0 00 666 7 222222 1 0 77 0 444 1 0 000000000 9 0 33333 0 0 7 8 3 6 000
consensus : TGTAATGCCCATTTNTCACTGTAATT----TTTTTA-AAAATTAAGCG-AA---AA---AAAGCATAT-N-GGTCTAAAGGTTCTCTACCTGCCACGAGTTCGAAATAATAATCTTCCAAAGTA---T--CGTTTTTCTTATTTNACTAGNCTAGTNAAATAAGAAAAAC-GAAGGTTCCGTTCATTNCCGATGTGAACCGAAGACGGTGTTT---G-CCGATTTCCGTGAATCAC-----GTG--GCAAATA-ATTACGCAT----ACAACA-AACGCTGGGT---ATTC-------A--CTCGTTTCACAT-N---TTTTTC-----CATTTACAT---ACA-TCTTTCACGAAG----CAG--A-G-TC-ACT--T-ATN--GACTAAAAATAC-TTACCGA----TGCCATTTCTGTT-CCTT-TTTTACGTA-GAT---TT---GTTGACGAAAGTGT-T-------GT----TCA-------G-----AAAA---T-G---CTTTGG-------------GC-------ATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACTGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTGAAAT--TAT-TTTTTTATTATTCG-TATTTCTCTAT-TTCTAATAC--ATTTTCTTC-A----AG-TTTT-ATGCGACAATAA---CAG-TTTTAACTGCACAGCAACCGACCAGAGCGAAATNAGCTCTTATTATGACATTCACCGGTAAACACAT--AGAATGCCGTAAGATGGGCATT
Reference ( gi|2 ) : TGTAATGCCCATTTGTCACTGTAATTATTTTTTTTA-AAAATTAAGCG-AA---AA---AAAGCATAT-T-GGTCTAAAGGTTCTTTACCTGCCACGAGTTCGAAATAATAATCATCCAAAGAA---T--CATTTTTCTTATTTCACTAGCCTAGTCAAATAAGGAAAAC-GAAAGTTCTGTTCATTTTCGATGTGAACCGAAG-CGGTGTTT---G-CCGATTTGAGTGAATCAC-----ATGC-GCAAATA-ATTATGCAT----ACAACA-AACACTGGGT---ATCC-------A--CTCGTTTCACGG-G---TTTTTC-----CATTTACAT---AC--TCTTTCGCGTAG----CAG--A----C-ACT--T-ATA--AAATAAAAATAC-T-ACCGA----TGATATTTTTGTT-CCGT-TTTTACGTA-GAT---TA---GTTGACGAAAGTGT-T-------GT----TTA-------G-----AAAA---T-G---CTTTAA-------------GA-------ATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACCGCC-----CGAGTCATGGCGAAGTCTTTTGAAA-CCGAAACTAAAATGCTAT-TTTTTTATTACTCG-TATTTCGCTAT-TTCTAATAT--ATTTTCTCC-A----AA-TTTT-ATGCAGCAATAA---CAG-TTTAAACTGCATAGCAACCGACCAGAGCAAAATTAGCTCTTATTATGACATTCACCGGTAAACACA---AGAATGCCGTAAGATGGGCATTACG
gi|9 : TGTAATGCCCATTTATCACTGTAATT----TTTTTA-AAGATTAAGCG-AA---AA---AGAGCATAT-A-GGTCTAAAGGTT
gi|1 : gTAATGCACATTTATCACTGTAATT-----TTTTA-AAAATTAAGCG-AA---AA---AAAGCATAT-T-GGTCTAAAGGTTgtggtaaaaattgactaacgacccattattcccaactctacctgccacgagtttgaaataataatcttccaaagtatcattttcttatttcactaccctaggcaaataagaaaaacgaaggttccgttcatttccgatgttaaccgaaacgttgtttgcccgaaatccgtgtaccacgtggcgaattattatgcataaaacaaacacagggtattcactcgtttcacaaacctctttcacttgta
gi|10 : ATGCCCATTTTTCACTGTAA---------------AATTAAGCA-AATAAAA---AAAGTATGA-A-GGTCTGAAGGTTgtggtaaataatggcttacgacccattattccaaactctatctgccatgagttcgaaataataatattccaaaatatattttttcttatttcactagcctagtcaaataagaaaaacaaaggttccgttcatttccgatgtaatccgaagcggtgtttgccgatttccgtgaatcacgtgggcaaataattatgcatacaacaaactctgggtattcactaatttcacgggttttttttccatttacatacactatttcacgtagcaaacggtcacttgtatagattaaaaatactaccgatgacatttctgttactttttttacgtagatttgttcacaaagtgttgtttagaaaatgctttaggaataaataatgtaaattatgcgtttacggaacagcccgaatcacggcgaagtcttttgaaaccgaaactaaaatgctttttttattactcgtatttctctatttccaatatattttcttcaattttttttaacaataaccgtttttaactgcacagcaaccgaccagagtgaaattagctcttatgacattcaccggtaaacacaagaatgccgttagatagg
gi|13 : ttaaagtggtcttATGCCCATTTTTCTCTGTAA---------------AATTAAGCGCAA---AA---AAGGCATATATAAGTCTAAAGGTTgtgataaataatagctaatgacccattattccccaattctacttgccaccattcgaaataataatcttcaaaaatttcttttttcttatttcactacctcagttaaataagaaaaacgaaggttccgttaattgctgatatgaaccgaagacggtgtttgccgatttctttttttatcacggtgtaatacgctttcacatgtttt
gi|3 : gtgacgatATTTTTATTATAAAATCAAGCG-AA---AAAACAAAACGTAT-A-AGTCTAAAGGTTgtgatatataatggctaatgacccattatttccaactctacctgccgccagttccaataatcttctaaaatattatttttcttaattgactg
gi|4 : taaacttgcgctctgcgcTAAGCG-AA---AA---AAAGCATAT-T-GGTCTTAAGGTTgtggtaaataatggttaacgacttaatatttctaactctaccaatagtcttccaaaatatgttttttttcttacttgactgacccagtgaaatatgccgctatgaactgaagacgtttttttttatcgatttccgagaatcacgctacatattaccacggtgttatattcttgattaattctcgtttcacatcgtttgtcatttacacacactctttcacgaagaagactatttattgactaaaatacttaccgatgctatttctgttccatgttgttttgaaaatgtatcttcgacttccggaacattgctttgggcataaattaagcaaattagatcgtgcaatcttataatcatggggaatcacagtgaaatcttttgaaataaaaaatgaaacgattttttatttttggatttttttttatttcttatacactttctacaagtttttatgcgacaataatagttttaactgtacagcaaccgacttagcgaaataagctattgtgacattcaccggtaaacacctagtatgttgtaagatggtcatt
gi|1 : agaaAT-T-ATTCCAAA----CTCTATCTGCCATGAGTTCGAAATAATAATATTCCAAAATA---T--ATTTTTTCTTATTTCACTAGCCTAGTCAAATAAGAAAAAC-AAAGGTTCCGTTCATTTCCGATGTAATCCGAAG-CGGTGTTT---G-CCGATTTCCGTGAATCAC-----GTGG-GCAAATA-ATTATGCAT----ACAACA-AACTCTGGGT---ATTC-------A--CTAATTTCACGG-GTTTTTTTTC-----CATTTACATAC-AC--TATTTCACGTAG----CAA--ACGGTC-ACTTGT-ATA--GATTAAAAATAC-T-ACCGA----TGACATTTCTGTTACTTT-TTTTACGTA-GAT---TT---GTTCAC-AAAGTGT-T-------GT----TTA-------G-----AAAA---T-G---CTTTAG-------------GA-------ATAAATAATGTAAATT--AT-------GCGT----TTACGGAACAGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTAAAATGC--T-TTTTTTATTACTCG-TATTTCTCTAT-TTCCAATAT--ATTTTCTTC------AA-TTTT-TTTTAACAATAA---CCGTTTTTAACTGCACAGCAACCGACCAGAGTGAAATTAGCTC---TTATGACATTCACCGGTAAACACA---AGAATGCCGTTAGATAGGgtggtaaataatggctaatgacccatttttcctaactgtgcctgccatgagttcgaaataataatcttccaaagtatcatttttcttatttcactaacctagtcaaataagaaaagcgaaggttcctttcatttacgatgtgaaccgaagcggtgtttgctgatttcagtgaatcacgtgggcaaacaattatgcatacaacaaacactgggtagtcactcgtttcacgtttttttcatttacattacactcttccacgtagtagacgatcacctgtatagactaaaaatactaccgatgacatttctgttcattttttatgtagatttggtgacgaaattgttgtttagaaaatgctttacgaataaattatgcaaattacattgtgcaagcatttacagaacagccggaatcacagcgaagtcttttgaaaccgaaactaaaatgctttttttgtaactcgtttttttctaatatattttcttcaaaattttatgcagcaataacagtttaaactgcacagcaactgaccagagtgaaattggctcttattatgacattcacccgtaaacacaagaat
gi|4 : taatgcacatttatcactgtaattttttaaaaattaagcgaaaaaaagcatattggtctaaaggttgtggtaaataatggcttacgacccCTGTGCCTGCCATGAGTTCGAAATAATAATCTTCCAAAGTA---T--CATTTTTCTTATTTCACTAACCTAGTCAAATAAGAAAAGC-GAAGGTTCCTTTCATTTACGATGTGAACCGAAG-CGGTGTTT---G-CTGATTTCAGTGAATCAC-----GTGG-GCAAACA-ATTATGCAT----ACAACA-AACACTGGGT---AGTC-------A--CTCGTTTCAC-G-T---TTTTTT-----CATTTACATTACAC--TCTTCCACGTAG----TAG--ACGATC-ACCTGT-ATA--GACTAAAAATAC-T-ACCGA----TGACATTTCTGTT-CATT-TTTTATGTA-GAT---TT---GGTGACGAAATTGT-T-------GT----TTA-------G-----AAAA---T-G---CTTTAC-------------GA-------ATAAATTATGCAAATTACATTGTGCAAGCAT----TTACAGAACAGCC-----GGAATCACAGCGAAGTCTTTTGAAA-CCGAAACTAAAATGC--T-TTTTTTGTAACTCG-T-TTT-----T-TTCTAATAT--ATTTTCTTCAA----AA-TTTT-ATGCAGCAATAA---CAG-TTTAAACTGCACAGCAACTGACCAGAGTGAAATTGGCTCTTATTATGACATTCACCCGTAAACACA---AGAAT
gi|9 : agaataagcgaaaaaaagcatattggtcttaaggttgtggtaaataatggctaatgacccatttttcctaaCTCTACCTGCCACGAGTTTGAAATAATAATCTTCCAAAGTA---T--CATTTT-CTTATTTCACTACCCTAGGCAAATAAGAAAAAC-GAAGGTTCCGTTCATTTCCGATGTTAACCGAAA-CGTTGTTT---GCCCGAAATCCGTGTACCAC-----GTG--GCGAATT-ATTATGCAT----AAAACA-AACACAGGGT---ATTC-------A--CTCGTTTCAC
gi|13 : gtgtaatgcccatttatcactgtaatttttttaaagattaagcgaaaaagagcatataggtctaaaggttgtggtaaaaattgactaacgacccattattcccaaCTCTACCTGCCGCCAGTTC----CAATAATCTTCTAAAATA---T--TATTTTTCTTAATTGACTaaacctctttcacttgta
gi|10 : gtgacgatatgcccatttttctctgtaaaattaagcgcaaaaaaggcatatataagtctaaaggttgtgatatataatggctaatgacccattatttccaaTCTACTTGCCACCA-TTCGAAATAATAATC-TTCAAA-AATT-T--CTTTTTTCTTATTTCACTACCTCAGTTAAATAAGAAAAAC-GAAGGTTCCGTTAATTGCTGATATGAACCGAAGACGGTGTTT---G-CCGATTTg
gi|3 : ttaaagtggtcttatgcccatttttcactgtaaaattaagcaaataaaaaaagtatgaaggtctgaaggttgtgataaataatagctaatgacccattattccccaatAATAGTCTTCCAAAATA---TGTTTTTTTTCTTACTTGACTGACCCAGT---------------GAAA----TATGC-----CGCTATGAACTGAAGACGTTTTTTTTTA-TCGATTTCCGAGAATCAC----------GC----------TACAT----ATTAC----CACGGTGTTATATTCTTGATTAATTCTCGTTTCACATCG---TTTGTC------ATTTACAC---ACACTCTTTCACGAAG----AAG--A----CTATT--T-ATT--GACTAAAA-TAC-TTACCGA----TGCTATTTCTGTT-CCAT-GTT---GT--------------TT--TGAAAATGTAT-------CT----TCGACTTCCGG-----AACA---TTG---CTTTGG-------------GC-------ATAAATTAAGCAAATTAGATCGTGCAATCTTATAATCATGGG------------GAATCACAGTGAAATCTTTTGAAA-TAAAAAATGAAACG--AT-TTTTT-ATTTTTGGATTTTTTTTTAT-TTCTTATAC--ACTTTCTAC-A----AG-TTTTTATGCGACAATAA---TAG-TTTTAACTGTACAGCAACCGACT-TAGCGAAATAAGC---TATTGTGACATTCACCGGTAAACACCT--AGTATGTTGTAAGATGGTCATTctttttttatcacggtgtaatacgctttcacatgtttt
gi|4 : taaacttgcgctctgcgcatttttattataaaatcaagcgaaaaaacaaaacgtataagtctaaaggttgtggtaaataatggttaacgacttaatatttctaactctaccAAGGAACCTT--CGCTTTTCTTATTTGACTAGGTTAGTGAAATAAGAAAAAT-GA
gi|9 : agaataagcgaaaaaaagcatattggtcttaaggttgtggtaaataatggctaatgacccatttttcctaactgtgcctgccatgagttcgaaataataatcttccaaagta---T--CGTTTTTCTTATTTGCCTAGGGTAGTGAAATAA-GAAAAT-GAtcatttacgatgtgaaccgaagcggtgtttgctgatttcagtgaatcacgtgggcaaacaattatgcatacaacaaacactgggtagtcactcgtttcacgtttttttcatttacattacactcttccacgtagtagacgatcacctgtatagactaaaaatactaccgatgacatttctgttcattttttatgtagatttggtgacgaaattgttgtttagaaaatgctttacgaataaattatgcaaattacattgtgcaagcatttacagaacagccggaatcacagcgaagtcttttgaaaccgaaactaaaatgctttttttgtaactcgtttttttctaatatattttcttcaaaattttatgcagcaataacagtttaaactgcacagcaactgaccagagtgaaattggctcttattatgacattcacccgtaaacacaagaat
gi|10 : gtgtaatgcccatttatcactgtaatttttttaaagattaagcgaaaaagagcatataggtctaaaggttgtggtaaaaattgactaacgacccattattcccaactctacctgccacgagtttgaaataataatcttccaaagta---T--CGTTTTTCTTATTTAACTGAGGTAGTGAAATAAGAAAAAA-GAAATTTTTGaggttccgttcatttccgatgttaaccgaaacgttgtttgcccgaaatccgtgtaccacgtggcgaattattatgcataaaacaaacacagggtattcactcgtttcacaaacctctttcacttgta
gi|1 : ttaaagtggtcttatgcccatttttcactgtaaaattaagcaaataaaaaaagtatgaaggtctgaaggttgtgataaataatagctaatgacccattattccccaattctacttgccaccattcgaaataataatcttTTTTTCTTATTTGACTAGGCTAGTGAAATAAGAAAAAaggttccgttaattgctgatatgaaccgaagacggtgtttgccgatttctttttttatcacggtgtaatacgctttcacatgtttt
gi|3 : taatgcacatttatcactgtaattttttaaaaattaagcgaaaaaaagcatattggtctaaaggttgtggtaaataatggcttacgacccattattccaaactctatctgccatgagttcgaaataataatattccaaaatatatTATTTCACTGGGTCAGTCAAGTAAGAAAAAcaaaggttccgttcatttccgatgtaatccgaagcggtgtttgccgatttccgtgaatcacgtgggcaaataattatgcatacaacaaactctgggtattcactaatttcacgggttttttttccatttacatacactatttcacgtagcaaacggtcacttgtatagattaaaaatactaccgatgacatttctgttactttttttacgtagatttgttcacaaagtgttgtttagaaaatgctttaggaataaataatgtaaattatgcgtttacggaacagcccgaatcacggcgaagtcttttgaaaccgaaactaaaatgctttttttattactcgtatttctctatttccaatatattttcttcaattttttttaacaataaccgtttttaactgcacagcaaccgaccagagtgaaattagctcttatgacattcaccggtaaacacaagaatgccgttagatagg
gi|6 : taaacttgcgctctgcgcatttttattataaaatcaagcgaaaaaacaaaacgtataagtctaaaggttgtggtaaataatggttaacgacttaatatttctaactctaccaatagtcttccaaaatatgtttAAATGAGAAAAAAAGATGGTTCTGTTGATTGCCGATATGAACCAGAGAC----TTT---------TTTAACTGA-TCACCTTGAAT-C-ACAAACACACTACACATTACCACGACGTAATACT-------AT---------A--CTCATTTCACAT-T---TTTTTCATTTACATTTACAT---GC--ACTTTCACGAAGAAGACAGTCA----C-ATT--T-ATT--GAATAGAAATAC-TTACAAAAGAATGATGCCTTTCTT-TCCTGTTTTGCATACAAT---T----GTTGACAAAAATGTAT-------CT----TCA-------ACTTCCAAAACATT-G---CTTTGG-------------GC-------ATGAATTATTCAGGTTAGATTGTGTAAGCAT----TTACAGAACTGCC-----CAAATCACGGC--AGTCTTTTATAA-CC-------AAAT--TAT-TTTTTTATTATTGG-TATTTCTCTAT-TTCTAATAC--A-TTTCTTC-A----AGTTTTT-ATGCGATAATAATTTTTT-TTTAAACTGCACAGCAACCGACCAGAGCTAAATTAGC-CTTtgccgctatgaactgaagacgtttttttttatcgatttccgagaatcacgctacatattaccacggtgttatattcttgattaattctcgtttcacatcgtttgtcatttacacacactctttcacgaagaagactatttattgactaaaatacttaccgatgctatttctgttccatgttgttttgaaaatgtatcttcgacttccggaacattgctttgggcataaattaagcaaattagatcgtgcaatcttataatcatggggaatcacagtgaaatcttttgaaataaaaaatgaaacgattttttatttttggatttttttttatttcttatacactttctacaagtttttatgcgacaataatagttttaactgtacagcaaccgacttagcgaaataagctattgtgacattcaccggtaaacacctagtatgttgtaagatggtcatt
gi|5 : gGTTAATTACCAGTATGACCTGAAG-ACGTATTTT--A-CCGATTTCTGTGAATCAC-------GCTACACATT-ATCACG-GC----GCAATA---TGCTG--T---ATAC-------AAACTCATTTCACAT-C---GTTTTC-----AAGTTACAT---ACAGCTTTTCATGAAG----AAG--ATGGTC-ACT--TTATT--GACTAAAAATGCCT-ATCGA----TGCAATTTCTTCT-CCTT-TTTTCCATA-TATATGTAATTGTTGATGAAAGAGT-T-------GT----TTT-------G-----AAAA---C-ATATCTTCAACTTTCGAAACATTGATTTGGTCATAAATTATGTAGATTAGATCATGCAAGTAT----TTACACACCTGCC-----TGAATCACAGTGAAGTCCTTCGAAA-CCGAAACTGAAAT--TA--TTTGTTATTACTCG-TATTTCTCTAT-TTCTAATAC--ATTTT---C-A----AGCTTTT-ATGCGCTAACAA---TAG-TTTA---TG----------GAACAGAGCGAAATAAGCTCTTCTTATGACATTCACCAGTAAACACAT--AGAATGATGTACGATGAGCAT
gi|7 : cACGCTGGAT---ACTT-------G--CTCATTTCACAT-G---TTTT-------CATTTACAT---ACACTCTTTCACG-AGAATACAG--T----C-ACT--T-GTA-------------T-T-A--------TGCCATTTCTGTT-CCTT-TTTTGCGTA-GAT---T---------------TGT-T-------G-------AC------G-----AAAG---T-G---TT------------------------------GTTATGAAAATNNNNNNNNNNNNNNNN----NNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN-----TTTTATTATTCG-TATATCGCTTT-TTCTAATAC--ATTTT-TAC-ATAAAAA-TTTT-ATGCGACAATAA---CAG-TTCTAACTGCACAGCAACCGACCAGAGAAAAATGAGCTCTTATTATGATAGTCACTGGTTAACACGT--AGAATGCCGCAAAATAGaatg
gi|8 : ctacggcgtaat----C-ACT--T-GTATTGACTAAACATAC-TTACCGA----TGCTATTTCCGTT----T-TTTGAT-TA-GAT---TT---GTTGAGGAAAGTGT-TCGAAAACGTATCTTCAACTTCCTG-----AATA---TTG---CCTTGG-------------GC-------ATAAGTTATGCAAATAAAATCATGCAAGCGA----TTACGGAACTGCCTTAATC-AATCACAGCGAAGTCATTTGAAA-ACGAAAGTGAA----CAT-TTTTTTAATATTTG-AATTTATCTAT-TTCTTATAT--GTTTTCTTC---------------TGCA-CA------------------------GCAACCGACCAAAGATAAATTAGCTCTTGTTATGACATTCACTGGTAAACACAC--GGAATGCCGTAAGAT
gi|11 : acggtAA---T-G---CTTTGT-------------GC-------ATAAACTATACAAATTAGATCGTGCAAACGT----TTACGGAACTGCC-----CGAATCACGGC--------TTGAA---TGAG---------------TTTTTATTATTCT-TATTTCTCTTT-TTCTAATAT--ATTTTCATC-A----CG-TTTT-AAGCGACAATAA---T-G-TTTTAACTGTACAGGAACCGACCAGAGCGAAATAAGCTCTTATTATGACATTCACCGGTAAACataaccataacgcaat
gi|12 : cgtattttttgcttttAAGCCTTT---AA-C--AAAC-AAACT--TATATTCTTTATT--CCA-TGTTGTGAAATGCTCTGATGGGAATGTTCTTC-A----AG-TTTTTATGCAACAAAAA---CGG-TTTTAACTGCACAGCAACCGACCAGAGCGAAAATAGCTCGTATTATGGTATACACCGGTAAACACAT--AGAATGCTGTAAGAGGCGCAT
gi|17 : TCTTTTGAAAACCAAAACTGAAATTCCTT-TTTTTTATTATTCG-TATTTCTCTATATTCaa
gi|15 : CAATAA---TAG-TTTTAATTGCACAGCATCTGACCAGAGTTAAATTAGCTTTTATTATGCCATTCATC-AT----------AGAATGTTGTAATATGGGCAT
gi|16 : gttttttttttaACCAGAGCAAAATAAGCTTTTATTATGACTTACACCGGTAAACAAATGGATAATACTGCAAGAAAGGCATa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TTAAAGTGACATTATGCCAATGGTTCACAGTAAAATTAAGATAAAAAAAGCATATATATATATATATATATATAGGTCTAAAGGTTATTGTAAACAATAGCTAATGACCCATTATTTTCAACA
Alignments
lowQualScore : 3333333333333333 111 111 222222222222 1111 11111 111 1111 111111 111111 22 222 22 1111111 111111 7777777777777777777777777777777777777777777777777777777777 11111 22222222222 1111111
lowQualScore : 1 7777777777777777 555 000 77 1 999999999999 2222 4 0 0 44444 99 000 1 44 1 5 2 1 9 2 99999 6666 77 4 5 88 2 0 66 5 66 222222 1 0 333333 5 44 5 77 5 888 66 55 1 1 0 3 6666666 5 3 0 444444 0 1 0 8888888888888888888888888888888888888888888888888888888888 8 2 1 1 9999 0 2 11111 2 3333 0 11111111111 55 3 3 55 3 3 4 6666666 4 1 3 3 8888 0 1 7 55
lowQualScore : . ................ ... ... .. . ............ .... . . . ..... .. ... . .. . . . . . . ..... .... .. . . .. . . .. . .. ...... . . ...... . .. . .. . ... .. .. . . . . ....... . . . ...... . . . .......................................................... . . . . .... . . ..... . .... . ........... .. . . .. . . . ....... . . . . .... . . . ..
lowQualScore : 0 3333333333333333 777 000 99 0 333333333333 1111 3 7 7 33333 33 000 0 77 0 7 5 0 4 5 88888 0000 99 3 7 11 2 4 99 0 99 222222 0 1 222222 7 33 7 99 3 999 99 66 0 4 1 2 2222222 0 1 2 444444 1 4 2 7777777777777777777777777777777777777777777777777777777777 9 9 1 3 4444 2 2 11111 3 7777 1 44444444444 00 6 6 00 6 0 0 1111111 0 4 5 6 7777 2 0 2 55
consensus : TGTAATGCCCATTTNTCACTGTAATT----TTT-TTA-AAAATTAAGCG---AAAAAA---AGC--ATATNGGTCT------------AAA----GGTTCTCTACCTGCCACGAGTTCGAAAT-----AATAATCTTCCAAAGTATCATTTTT---CTTATTTCACTANCCTAGTCAAATAAGAAAAAC-GAAGGTTCCGTTCATTNCCGATGTGAACCGAAGACGNTGTTT---G-CCGATTTCCGTGAATCACGCG-G-CAAATN-ATTACGCGT-ACAACAAACGCTGGGT--ATT-CA--CTCGTTTCAC--G---TCTTTTTC-----CATTTACAT-ACACTCTTT-CACGN-AGNAGACGGTCAC--TTGTATNGACTAAAAATACTTAC-------CGATGCCATTTCTGTT-CCTTTTTTACGTAGAT------TTGTTGACGAAAGTGT-T-------GT----TCA-------G-----AAAA-----------------------T-GCTTTGGGCATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACTGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTGAAA-T--TA--T-TTTTTTATT--AT-TCG-T--ATTTCTCTAT-TTCTAATACATTTTCTTC-A----AG-TTTT-ATGCGACAATAACAG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAATTAGCTCTTATTATGACATTCACCGGTAAACACATAG--AATGCCGTAAGATGGGCATT
Reference ( family-6387 ) : TGTAATGCCCATTTNTCACTGTAATT----TTT-TTA-AAAATTAAGCG---AAAAAA---AGC--ATATNGGTCT------------AAA----GGTTCTCTACCTGCCACGAGTTCGAAAT-----AATAATCTTCCAAAGTATCGTTTTT---CTTATTTNACTAGNCTAGTNAAATAAGAAAAAC-GAAGGTTCCGTTCATTNCCGATGTGAACCGAAGACGGTGTTT---G-CCGATTTCCGTGAATCACGTG-G-CAAATA-ATTACGCAT-ACAACAAACGCTGGGT--ATT-CA--CTCGTTTCAC--A---TNTTTTTC-----CATTTACAT-ACA-TCTTT-CACGA-AGCAGA--GTCAC--TT--ATNGACTAAAAATACTTAC-------CGATGCCATTTCTGTT-CCTTTTTTACGTAGAT------TTGTTGACGAAAGTGT-T-------GT----TCA-------G-----AAAA-----------------------T-GCTTTGGGCATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACTGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTGAAA-T--TA--T-TTTTTTATT--AT-TCG-T--ATTTCTCTAT-TTCTAATACATTTTCTTC-A----AG-TTTT-ATGCGACAATAACAG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAATNAGCTCTTATTATGACATTCACCGGTAAACACATAG--AATGCCGTAAGATGGGCATT
gi|1 : TAATGCACATTTATCACTGTAATT----TT--TTA-AAAATTAAGCG---AAAAAA---AGC--ATATTGGTCT------------AAA----GGTT
gi|1 : CTCTATCTGCCATGAGTTCGAAAT-----AATAATATTCCAAAATATATTTTTT---CTTATTTCACTAGCCTAGTCAAATAAGAAAAAC-AAAGGTTCCGTTCATTTCCGATGTAATCCGAAG-CGGTGTTT---G-CCGATTTCCGTGAATCACGTG-GGCAAATA-ATTATGCAT-ACAACAAACTCTGGGT--ATT-CA--CTAATTTCAC--GGGTTTTTTTTC-----CATTTACAT-ACACTATTT-CACGT-AGCAAACGGTCAC--TTGTATAGATTAAAAATACT-AC-------CGATGACATTTCTGTTACTTTTTTTACGTAGAT------TTGTTCAC-AAAGTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTAGGAATAAATAATGTAAATTA-----TGC----GT----TTACGGAACAGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTAAAA-T--GC--T-TTTTTTATT--AC-TCG-T--ATTTCTCTAT-TTCCAATATATTTTCTTC-A----AT-TTTT--TTTAACAATAACCGTTTTT---AACTGCACAGCAACCGACCAGAGTGAAATTAGCTC---TTATGACATTCACCGGTAAACACA-AG--AATGCCGTTAGATAGGgtggtaaataatggcttacgacccattattccaaactctatctgccatgagttcgaaataataatattccaaaatatattttttcttatttcactagcctagtcaaataagaaaaacaaaggttccgttcatttccgatgtaatccgaagcggtgtttgccgatttccgtgaatcacgtgggcaaataattatgcatacaacaaactctgggtattcactaatttcacgggttttttttccatttacatacactatttcacgtagcaaacggtcacttgtatagattaaaaatactaccgatgacatttctgttactttttttacgtagatttgttcacaaagtgttgtttagaaaatgctttaggaataaataatgtaaattatgcgtttacggaacagcccgaatcacggcgaagtcttttgaaaccgaaactaaaatgctttttttattactcgtatttctctatttccaatatattttcttcaattttttttaacaataaccgtttttaactgcacagcaaccgaccagagtgaaattagctcttatgacattcaccggtaaacacaagaatgccgttagatagg
gi|10 : taatgcacatttatcactgtaattttttaaaaattaagcgaaaaaaagcatattggtctaaaggttgtggtaaataatggcttacgacccattattccaaaATGCCCATTTTTCACTGT----------------AAAATTAAGCAAATAAAAAA---AGT--ATGAAGGTCT------------GAA----GGTT
gi|10 : ttaaagtggtcttTCTACTTGCCACCA-TTCGAAAT-----AATAATCTTCAAAAATTTCTTTTTT---CTTATTTCACTACCTCAGTTAAATAAGAAAAAC-GAAGGTTCCGTTAATTGCTGATATGAACCGAAGACGGTGTTT---G-CCGATTTCgtgataaataatagctaatgacccattattccccaattctacttgccaccattcgaaataataatcttcaaaaatttcttttttcttatttcactacctcagttaaataagaaaaacgaaggttccgttaattgctgatatgaaccgaagacggtgtttgccgatttctttttttatcacggtgtaatacgctttcacatgtttt
gi|11 : ttaaagtggtcttatgcccatttttcactgtaaaattaagcaaataaaaaaagtatgaaggtctgaaggttgtgataaataatagctaatgacccattattccccaatAA-----------------------T-GCTTTGTGCATAAACTATACAAATTAGATCGTGCAAACGT----TTACGGAACTGCC-----CGAATCACGGC--------TTGAA---------TGAG------------TTTTTATT--AT-TCT-T--ATTTCTCTTT-TTCTAATATATTTTCATC-A----CG-TTTT-AAGCGACAATAAT-G-TTTT---AACTGTACAGGAACCGACCAGAGCGAAATAAGCTCTTATTATGACATTCACCGGTAAACtttttttatcacggtgtaatacgctttcacatgtttt
gi|12 : cgtattttttgcttttAAGCCTTT---AA-C--AAAC--AAACT--TA--TATTCTTTATTCCATGTTG-TGAAATGCTCTGA-TGGGAATG----TTCTTC-A----AG-TTTTTATGCAACAAAAACGG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAAATAGCTCGTATTATGGTATACACCGGTAAACACATAG--AATGCTGTAAGAGGCGCAT
gi|13 : ATGCCCATTTTTCTCTGT----------------AAAATTAAGCGC--AAAAAA---GGCATATATAAGTCT------------AAA----GGTTaa
gi|13 : gtgacgatCTCTACCTGCCGCCAGTTC----C-----AATAATCTTCTAAAATATTATTTTT---CTTAATTGACTgtgatatataatggctaatgacccattatttccaactctacctgccgccagttccaataatcttctaaaatattatttttcttaattgactg
gi|15 : gtgacgatatgcccatttttctctgtaaaattaagcgcaaaaaaggcatatataagtctaaaggttgtgatatataatggctaatgacccattatttccaaACAATAATAG-TTTT---AATTGCACAGCATCTGACCAGAGTTAAATTAGCTTTTATTATGCCATTCAT---------CATAG--AATGTTGTAATATGGGCATg
gi|16 : gttttttttttACCAGAGCAAAATAAGCTTTTATTATGACTTACACCGGTAAACAAATGGATAATACTGCAAGAAAGGCATa
gi|17 : TCTTTTGAAAACCAAAACTGAAA-T--TCCTT-TTTTTTATT--AT-TCG-T--ATTTCTCTATATTCaatg
gi|2 : TGTAATGCCCATTTGTCACTGTAATTATTTTTT-TTA-AAAATTAAGCG---AAAAAA---AGC--ATATTGGTCT------------AAA----GGTTCTTTACCTGCCACGAGTTCGAAAT-----AATAATCATCCAAAGAATCATTTTT---CTTATTTCACTAGCCTAGTCAAATAAGGAAAAC-GAAAGTTCTGTTCATTTTCGATGTGAACCGAAG-CGGTGTTT---G-CCGATTTGAGTGAATCACATGCG-CAAATA-ATTATGCAT-ACAACAAACACTGGGT--ATC-CA--CTCGTTTCAC--G---GGTTTTTC-----CATTTACAT-AC--TCTTT-CGCGT-AGCAGA----CAC--TT--ATAAAATAAAAATAC-TAC-------CGATGATATTTTTGTT-CCGTTTTTACGTAGAT------TAGTTGACGAAAGTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTAAGAATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACCGCC-----CGAGTCATGGCGAAGTCTTTTGAAA-CCGAAACTAAAA-TGCTA--T-TTTTTTATT--AC-TCG-T--ATTTCGCTAT-TTCTAATATATTTTCTCC-A----AA-TTTT-ATGCAGCAATAACAG-TTTA---AACTGCATAGCAACCGACCAGAGCAAAATTAGCTCTTATTATGACATTCACCGGTAAACACA-AG--AATGCCGTAAGATGGGCATT
gi|3 : ATT----TTTATTATAAAATCAAGCG---AAAAAACAAAAC--GTATAAGTCTAAAGGTTGTGGTAAATAATGGTTAACGACTTAATAT---TTCTAACTCTACCAATAGTCTTCCAAAATAT-GTTTTTTTTCTTACTTGACTGACCCAGTGAAATA------------------------TGCCGCTATGAACTGAAGACGTTTTTTTTTA-TCGATTTCCGAGAATCACGCT-A-CATATT-ACCACG-GT-GTTATA--TTCTTGATTAATT-C----TCGTTTCAC--A---TCGTTTGT-----CATTTACAC-ACACTCTTT-CACGA-AGAAGA--CT-AT--TT--ATTGACTAAAA-TACTTAC-------CGATGCTATTTCTGTT-CC------ATGTTGTT------TTG------AAAATGTAT-------CT----TCGACTTCCGG-----AACA-----------------------TTGCTTTGGGCATAAATTAAGCAAATTAGATCGTGCAATCTTATAATCATGGG------------GAATCACAGTGAAATCTTTTGAAA-TAAAAAATGAAA-C--GA----TTTTTTATT--TT-TGGAT--TTTTTTTTAT-TTCTTATACACTTTCTAC-A----AGTTTTT-ATGCGACAATAATAG-TTTT---AACTGTACAGCAACCGACT-TAGCGAAATAAGC---TATTGTGACATTCACCGGTAAACACCTAG--TATGTTGTAAGATGGTCATTacg
gi|4 : taaacttgcgctctgcgcTAAGCG---AAAAAA---AGC--ATATTGGTCT------------TAA----GGTT
gi|4 : agaaCTGTGCCTGCCATGAGTTCGAAAT-----AATAATCTTCCAAAGTATCATTTTT---CTTATTTCACTAACCTAGTCAAATAAGAAAAGC-GAAGGTTCCTTTCATTTACGATGTGAACCGAAG-CGGTGTTT---G-CTGATTTCAGTGAATCACGTG-GGCAAACA-ATTATGCAT-ACAACAAACACTGGGT--AGT-CA--CTCGTTTCAC--G---TTTTTTTC------ATTTACATTACACTCTTC-CACGT-AGTAGACGATCAC--CTGTATAGACTAAAAATACT-AC-------CGATGACATTTCTGTT-CATTTTTTATGTAGAT------TTGGTGACGAAATTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTACGAATAAATTATGCAAATTACATTGTGCAAGCAT----TTACAGAACAGCC-----GGAATCACAGCGAAGTCTTTTGAAA-CCGAAACTAAAA-T--GC--T-TTTTTTGTA--AC-TCG-T---TTT-----T-TTCTAATATATTTTCTTCAA----AA-TTTT-ATGCAGCAATAACAG-TTTA---AACTGCACAGCAACTGACCAGAGTGAAATTGGCTCTTATTATGACATTCACCCGTAAACACA-AG--AATgtggtaaataatggctaatgacccatttttcctaactgtgcctgccatgagttcgaaataataatcttccaaagtatcatttttcttatttcactaacctagtcaaataagaaaagcgaaggttcctttcatttacgatgtgaaccgaagcggtgtttgctgatttcagtgaatcacgtgggcaaacaattatgcatacaacaaacactgggtagtcactcgtttcacgtttttttcatttacattacactcttccacgtagtagacgatcacctgtatagactaaaaatactaccgatgacatttctgttcattttttatgtagatttggtgacgaaattgttgtttagaaaatgctttacgaataaattatgcaaattacattgtgcaagcatttacagaacagccggaatcacagcgaagtcttttgaaaccgaaactaaaatgctttttttgtaactcgtttttttctaatatattttcttcaaaattttatgcagcaataacagtttaaactgcacagcaactgaccagagtgaaattggctcttattatgacattcacccgtaaacacaagaat
gi|5 : agaataagcgaaaaaaagcatattggtcttaaggttgtggtaaataatggctaatgacccatttttcctaaCGTTAATTACCAGTATGACCTGAAGACGTATTTT---A-CCGATTTCTGTGAATCACGCT-A-CACATT-ATCACG-GC-GCAATA--TGCTG--T--ATA-CAAACTCATTTCAC--A---TCGTTTTC-----AAGTTACAT-ACA-GCTTTTCATGA-AGAAGATGGTCAC--TTT-ATTGACTAAAAATGCCTAT-------CGATGCAATTTCTTCT-CCTTTTTTCCATATATATGTAATTGTTGATGAAAGAGT-T-------GT----TTT-------G-----AAAACATATCTTCAACTTTCGAAACATT-GATTTGGTCATAAATTATGTAGATTAGATCATGCAAGTAT----TTACACACCTGCC-----TGAATCACAGTGAAGTCCTTCGAAA-CCGAAACTGAAA-T--TA----TTTGTTATT--AC-TCG-T--ATTTCTCTAT-TTCTAATACATT---TTC-A----AGCTTTT-ATGCGCTAACAATAG-TTT----------------ATGGAACAGAGCGAAATAAGCTCTTCTTATGACATTCACCAGTAAACACATAG--AATGATGTACGATGAGCAT
gi|6 : AAATGAGAAAAAAAGATGGTTCTGTTGATTGCCGATATGAACCAGAGACTTTTTTA---A-CTGATCACCTTGAATCAC-------AAACACACTACACATTACCACGA-CGT--AAT--ACTATA--CTCATTTCAC--A---TTTTTTTCATTTACATTTACAT-GCA--CTTT-CACGA-AGAAGACAGTCACATTT--ATTGAATAGAAATACTTACAAAAGAATGATGCC-TTTCT-TT-CCTGTTTTGCATACAA------TTGTTGACAAAAATGTAT-------CT----TCA-------ACTTCCAAAACAT--------------------T-GCTTTGGGCATGAATTATTCAGGTTAGATTGTGTAAGCAT----TTACAGAACTGCC-----CAAATCACGGC--AGTCTTTTATAA-CC-------AAA-T--TA--T-TTTTTTATT--AT-TGG-T--ATTTCTCTAT-TTCTAATACA-TTTCTTC-A----AGTTTTT-ATGCGATAATAATTT-TTTTTTAAACTGCACAGCAACCGACCAGAGCTAAATTAGC-CTTaatg
gi|7 : gACGCTGGAT--ACT-TG--CTCATTTCAC--A---TGTTTT-------CATTTACAT-ACACTCTTT-CACGAGAATACA--GTCAC--TT--GTA------------TTA-----------TGCCATTTCTGTT-CCTTTTTTGCGTAGAT------TTGTTGACG--------------------------------------AAAG-----------------------T-G--TTG--------TTATGAAAATNNNNNNNNNNNNNNNN----NNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN-N--NN--N-TTTT--ATT--AT-TCG-T--ATATCGCTTT-TTCTAATACATTTT-TAC-ATAAAAA-TTTT-ATGCGACAATAACAG-TTCT---AACTGCACAGCAACCGACCAGAGAAAAATGAGCTCTTATTATGATAGTCACTGGTTAACACGTAG--AATGCCGCAAAATAG
gi|8 : ctacggcgtaat--GTCAC--TTGTATTGACTAAACATACTTAC-------CGATGCTATTTCCGTT----TTTTGAT-TAGAT------TTGTTGAGGAAAGTGT-TCGAAAACGTATCTTCAACTTCCTG-----AATA-----------------------TTGCCTTGGGCATAAGTTATGCAAATAAAATCATGCAAGCGA----TTACGGAACTGCCTTAATC-AATCACAGCGAAGTCATTTGAAA-ACGAAAGTGAA-----CA--T-TTTTTTAAT--AT-TTG-A--ATTTATCTAT-TTCTTATATGTTTTCTTC---------------TGC-ACA------------------------GCAACCGACCAAAGATAAATTAGCTCTTGTTATGACATTCACTGGTAAACACACGG--AATGCCGTAAGAT
gi|9 : acgTGTAATGCCCATTTATCACTGTAATT----TTT-TTA-AAGATTAAGCG---AAAAAG---AGC--ATATAGGTCT------------AAA----GGTTataaccataacgcaat
gi|9 : gCTCTACCTGCCACGAGTTTGAAAT-----AATAATCTTCCAAAGTATCATTTT----CTTATTTCACTACCCTAGGCAAATAAGAAAAAC-GAAGGTTCCGTTCATTTCCGATGTTAACCGAA-ACGTTGTTT---GCCCGAAATCCGTGTACCACGTG-G-CGAATT-ATTATGCAT-AAAACAAACACAGGGT--ATT-CA--CTCGTTTCACAAA---CCTCTTTC-----gtggtaaaaattgactaacgacccattattcccaactctacctgccacgagtttgaaataataatcttccaaagtatcattttcttatttcactaccctaggcaaataagaaaaacgaaggttccgttcatttccgatgttaaccgaaacgttgtttgcccgaaatccgtgtaccacgtggcgaattattatgcataaaacaaacacagggtattcactcgtttcacaaacctctttcacttgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTAAAGTGACATTATGCCAATGGTTCACAGTAAAATTAAGATAAAAAAAGCATATATATATATATATATATATAGGTCTAAAGGTTATTGTAAACAATAGCTAATGACCCATTATTTTCAACA
Alignments
lowQualScore : 3333333333333333 111 111 222222222222 1111 11111 111111 11111111 11111 1111111 111111 7777777777777777777777777777777777777777777777777777777777 11111 22222222222 1111111
lowQualScore : 1 7777777777777777 555 000 77 1 999999999999 2222 4 0 0 44444 8888 1 5 2 1 9 1 99999 888888 66 77 5 11 99 2 0 66 5 66 88888888 0 22222 5 0 3 6 1 3 8 1 1 0 88 6666666 5 3 0 444444 0 1 0 8888888888888888888888888888888888888888888888888888888888 8 2 1 1 9999 0 2 11111 2 3333 0 11111111111 55 3 3 55 3 3 4 6666666 4 1 3 3 8888 0 1 7 55
lowQualScore : . ................ ... ... .. . ............ .... . . . ..... .... . . . . . . ..... ...... .. .. . .. .. . . .. . .. ........ . ..... . . . . . . . . . . .. ....... . . . ...... . . . .......................................................... . . . . .... . . ..... . .... . ........... .. . . .. . . . ....... . . . . .... . . . ..
lowQualScore : 0 3333333333333333 777 000 99 0 333333333333 1111 3 7 7 33333 1111 0 7 5 0 4 0 88888 777777 77 55 0 66 66 2 4 99 0 99 00000000 1 55555 7 1 0 6 0 4 8 0 4 1 22 2222222 0 1 2 444444 1 4 2 7777777777777777777777777777777777777777777777777777777777 9 9 1 3 4444 2 2 11111 3 7777 1 44444444444 00 6 6 00 6 0 0 1111111 0 4 5 6 7777 2 7 2 55
consensus : TGTAATGCCCATTTNTCACTGTAATT----TTT-TTA-AAAATTAAGCG---AAAAAA---AGC--ATATNGGTCT------------AAA----GGTTCTCTACCTGCCACGAGTTCGAAAT-----AATAATCTTCCAAAGTAT--CNTTTTTCTTATTTCACTANCCTAGTCAAATAAGAAAAAC-GAAGGTTCCGTTCATTNCCGATGTGAACCGAAGACGNTGTTT---G-CCGATTTCCGTGAATCACGC-G-G-CAAATN-ATTACG-CGT-ACAACAAACGCTGGGT--ATT-CA--CTCGTTTCAC--G---TCTTTTTC-----CATTTACA-TACACTCTTTCACGNAGAAGACGGTCACTTGTATTGACTAAAAATACTTAC-------CGATGCCATTTCTGTT-CCTTTTTTACGTAGAT------TTGTTGACGAAAGTGT-T-------GT----TCA-------G-----AAAA-----------------------T-GCTTTGGGCATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACTGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTGAAA-T--TA--T-TTTTTTATT--AT-TCG-T--ATTTCTCTAT-TTCTAATACATTTTCTTC-A----AG-TTTT-ATGCGACAATAACAG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAATTAGCTCTTATTATGACATTCACCGGTAAACACATAG--AATGCCGTAAGATGGGCATT
Reference ( family-6387 ) : TGTAATGCCCATTTNTCACTGTAATT----TTT-TTA-AAAATTAAGCG---AAAAAA---AGC--ATATNGGTCT------------AAA----GGTTCTCTACCTGCCACGAGTTCGAAAT-----AATAATCTTCCAAAGTAT--CATTTTTCTTATTTCACTANCCTAGTCAAATAAGAAAAAC-GAAGGTTCCGTTCATTNCCGATGTGAACCGAAGACGNTGTTT---G-CCGATTTCCGTGAATCACGC-G-G-CAAATN-ATTACG-CGT-ACAACAAACGCTGGGT--ATT-CA--CTCGTTTCAC--G---TCTTTTTC-----CATTTACA-TACACTCTTTCACGNAGNAGACGGTCACTTGTATNGACTAAAAATACTTAC-------CGATGCCATTTCTGTT-CCTTTTTTACGTAGAT------TTGTTGACGAAAGTGT-T-------GT----TCA-------G-----AAAA-----------------------T-GCTTTGGGCATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACTGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTGAAA-T--TA--T-TTTTTTATT--AT-TCG-T--ATTTCTCTAT-TTCTAATACATTTTCTTC-A----AG-TTTT-ATGCGACAATAACAG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAATTAGCTCTTATTATGACATTCACCGGTAAACACATAG--AATGCCGTAAGATGGGCATT
gi|1 : TAATGCACATTTATCACTGTAATT----TT--TTA-AAAATTAAGCG---AAAAAA---AGC--ATATTGGTCT------------AAA----GGTT
gi|1 : CTCTATCTGCCATGAGTTCGAAAT-----AATAATATTCCAAAATAT--ATTTTTTCTTATTTCACTAGCCTAGTCAAATAAGAAAAAC-AAAGGTTCCGTTCATTTCCGATGTAATCCGAAG-CGGTGTTT---G-CCGATTTCCGTGAATCACGT-G-GGCAAATA-ATTATG-CAT-ACAACAAACTCTGGGT--ATT-CA--CTAATTTCAC--GGGTTTTTTTTC-----CATTTACA-TACACTATTTCACGTAGCAAACGGTCACTTGTATAGATTAAAAATACT-AC-------CGATGACATTTCTGTTACTTTTTTTACGTAGAT------TTGTTCAC-AAAGTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTAGGAATAAATAATGTAAATTA-----TGC----GT----TTACGGAACAGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTAAAA-T--GC--T-TTTTTTATT--AC-TCG-T--ATTTCTCTAT-TTCCAATATATTTTCTTC-A----AT-TTTT--TTTAACAATAACCGTTTTT---AACTGCACAGCAACCGACCAGAGTGAAATTAGCTC---TTATGACATTCACCGGTAAACACA-AG--AATGCCGTTAGATAGGgtggtaaataatggcttacgacccattattccaaactctatctgccatgagttcgaaataataatattccaaaatatattttttcttatttcactagcctagtcaaataagaaaaacaaaggttccgttcatttccgatgtaatccgaagcggtgtttgccgatttccgtgaatcacgtgggcaaataattatgcatacaacaaactctgggtattcactaatttcacgggttttttttccatttacatacactatttcacgtagcaaacggtcacttgtatagattaaaaatactaccgatgacatttctgttactttttttacgtagatttgttcacaaagtgttgtttagaaaatgctttaggaataaataatgtaaattatgcgtttacggaacagcccgaatcacggcgaagtcttttgaaaccgaaactaaaatgctttttttattactcgtatttctctatttccaatatattttcttcaattttttttaacaataaccgtttttaactgcacagcaaccgaccagagtgaaattagctcttatgacattcaccggtaaacacaagaatgccgttagatagg
gi|10 : taatgcacatttatcactgtaattttttaaaaattaagcgaaaaaaagcatattggtctaaaggttgtggtaaataatggcttacgacccattattccaaaATGCCCATTTTTCACTGT----------------AAAATTAAGCAAATAAAAAA---AGT--ATGAAGGTCT------------GAA----GGTT
gi|10 : ttaaagtggtcttTCTACTTGCCACCA-TTCGAAAT-----AATAATCTTCAAAAATTT--CTTTTTTCTTATTTCACTACCTCAGTTAAATAAGAAAAAC-GAAGGTTCCGTTAATTGCTGATATGAACCGAAGACGGTGTTT---G-CCGATTTCgtgataaataatagctaatgacccattattccccaattctacttgccaccattcgaaataataatcttcaaaaatttcttttttcttatttcactacctcagttaaataagaaaaacgaaggttccgttaattgctgatatgaaccgaagacggtgtttgccgatttctttttttatcacggtgtaatacgctttcacatgtttt
gi|11 : ttaaagtggtcttatgcccatttttcactgtaaaattaagcaaataaaaaaagtatgaaggtctgaaggttgtgataaataatagctaatgacccattattccccaatAA-----------------------T-GCTTTGTGCATAAACTATACAAATTAGATCGTGCAAACGT----TTACGGAACTGCC-----CGAATCACGGC--------TTGAA---------TGAG------------TTTTTATT--AT-TCT-T--ATTTCTCTTT-TTCTAATATATTTTCATC-A----CG-TTTT-AAGCGACAATAAT-G-TTTT---AACTGTACAGGAACCGACCAGAGCGAAATAAGCTCTTATTATGACATTCACCGGTAAACtttttttatcacggtgtaatacgctttcacatgtttt
gi|12 : cgtattttttgcttttAAGCCTTT---AA-C--AAAC--AAACT--TA--TATTCTTTATTCCATGTTG-TGAAATGCTCTGA-TGGGAATG----TTCTTC-A----AG-TTTTTATGCAACAAAAACGG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAAATAGCTCGTATTATGGTATACACCGGTAAACACATAG--AATGCTGTAAGAGGCGCAT
gi|13 : ATGCCCATTTTTCTCTGT----------------AAAATTAAGCGC--AAAAAA---GGCATATATAAGTCT------------AAA----GGTTaa
gi|13 : gtgacgatCTCTACCTGCCGCCAGTTC----C-----AATAATCTTCTAAAATAT--TATTTTTCTTAATTGACTgtgatatataatggctaatgacccattatttccaactctacctgccgccagttccaataatcttctaaaatattatttttcttaattgactg
gi|15 : gtgacgatatgcccatttttctctgtaaaattaagcgcaaaaaaggcatatataagtctaaaggttgtgatatataatggctaatgacccattatttccaaACAATAATAG-TTTT---AATTGCACAGCATCTGACCAGAGTTAAATTAGCTTTTATTATGCCATTCAT---------CATAG--AATGTTGTAATATGGGCATg
gi|16 : gttttttttttACCAGAGCAAAATAAGCTTTTATTATGACTTACACCGGTAAACAAATGGATAATACTGCAAGAAAGGCATa
gi|17 : TCTTTTGAAAACCAAAACTGAAA-T--TCCTT-TTTTTTATT--AT-TCG-T--ATTTCTCTATATTCaatg
gi|2 : TGTAATGCCCATTTGTCACTGTAATTATTTTTT-TTA-AAAATTAAGCG---AAAAAA---AGC--ATATTGGTCT------------AAA----GGTTCTTTACCTGCCACGAGTTCGAAAT-----AATAATCATCCAAAGAAT--CATTTTTCTTATTTCACTAGCCTAGTCAAATAAGGAAAAC-GAAAGTTCTGTTCATTTTCGATGTGAACCGAAG-CGGTGTTT---G-CCGATTTGAGTGAATCACAT-GCG-CAAATA-ATTATG-CAT-ACAACAAACACTGGGT--ATC-CA--CTCGTTTCAC--G---GGTTTTTC-----CATTTACA-T--ACTCTTTCGCGTAGCAGA----CACT--TATAAAATAAAAATAC-TAC-------CGATGATATTTTTGTT-CCGTTTTTACGTAGAT------TAGTTGACGAAAGTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTAAGAATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACCGCC-----CGAGTCATGGCGAAGTCTTTTGAAA-CCGAAACTAAAA-TGCTA--T-TTTTTTATT--AC-TCG-T--ATTTCGCTAT-TTCTAATATATTTTCTCC-A----AA-TTTT-ATGCAGCAATAACAG-TTTA---AACTGCATAGCAACCGACCAGAGCAAAATTAGCTCTTATTATGACATTCACCGGTAAACACA-AG--AATGCCGTAAGATGGGCATT
gi|3 : ATT----TTTATTATAAAATCAAGCG---AAAAAACAAAAC--GTATAAGTCTAAAGGTTGTGGTAAATAATGGTTAACGACTTAATAT---TTCTAACTCTACCAATAGTCTTCCAAAATATGTTTTTTTTCTTACTTGACTGACCCAGTGAAATA------------------------TGCCGCTATGAACTGAAGACGTTTTTTTTTA-TCGATTTCCGAGAATCACGC-T-A-CATATT-ACCACG--GT-GTTATA--TTCTTGATTAATT-C----TCGTTTCAC--A---TCGTTTGT-----CATTTACA-CACACTCTTTCACGAAGAAGAC---TATTT--ATTGACTAAAA-TACTTAC-------CGATGCTATTTCTGTT-CC------ATGTTGTT------TTG------AAAATGTAT-------CT----TCGACTTCCGG-----AACA-----------------------TTGCTTTGGGCATAAATTAAGCAAATTAGATCGTGCAATCTTATAATCATGGG------------GAATCACAGTGAAATCTTTTGAAA-TAAAAAATGAAA-C--GA----TTTTTTATT--TT-TGGAT--TTTTTTTTAT-TTCTTATACACTTTCTAC-A----AGTTTTT-ATGCGACAATAATAG-TTTT---AACTGTACAGCAACCGACT-TAGCGAAATAAGC---TATTGTGACATTCACCGGTAAACACCTAG--TATGTTGTAAGATGGTCATTacg
gi|4 : taaacttgcgctctgcgcTAAGCG---AAAAAA---AGC--ATATTGGTCT------------TAA----GGTT
gi|4 : agaaCTGTGCCTGCCATGAGTTCGAAAT-----AATAATCTTCCAAAGTAT--CATTTTTCTTATTTCACTAACCTAGTCAAATAAGAAAAGC-GAAGGTTCCTTTCATTTACGATGTGAACCGAAG-CGGTGTTT---G-CTGATTTCAGTGAATCACGTGG-G-CAAACA-ATTATG-CAT-ACAACAAACACTGGGT--AGT-CA--CTCGTTTCAC--G---T-TTTTTT-----CATTTACATTACACTCTTCCACGTAGTAGACGATCACCTGTATAGACTAAAAATAC-TAC-------CGATGACATTTCTGTT-CATTTTTTATGTAGAT------TTGGTGACGAAATTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTACGAATAAATTATGCAAATTACATTGTGCAAGCAT----TTACAGAACAGCC-----GGAATCACAGCGAAGTCTTTTGAAA-CCGAAACTAAAA-T--GC--T-TTTTTTGTA--AC-TCG-T---TTT-----T-TTCTAATATATTTTCTTCAA----AA-TTTT-ATGCAGCAATAACAG-TTTA---AACTGCACAGCAACTGACCAGAGTGAAATTGGCTCTTATTATGACATTCACCCGTAAACACA-AG--AATgtggtaaataatggctaatgacccatttttcctaactgtgcctgccatgagttcgaaataataatcttccaaagtatcatttttcttatttcactaacctagtcaaataagaaaagcgaaggttcctttcatttacgatgtgaaccgaagcggtgtttgctgatttcagtgaatcacgtgggcaaacaattatgcatacaacaaacactgggtagtcactcgtttcacgtttttttcatttacattacactcttccacgtagtagacgatcacctgtatagactaaaaatactaccgatgacatttctgttcattttttatgtagatttggtgacgaaattgttgtttagaaaatgctttacgaataaattatgcaaattacattgtgcaagcatttacagaacagccggaatcacagcgaagtcttttgaaaccgaaactaaaatgctttttttgtaactcgtttttttctaatatattttcttcaaaattttatgcagcaataacagtttaaactgcacagcaactgaccagagtgaaattggctcttattatgacattcacccgtaaacacaagaat
gi|5 : agaataagcgaaaaaaagcatattggtcttaaggttgtggtaaataatggctaatgacccatttttcctaaCGTTAATTACCAGTATGACCTGAAGACGTATTTT---A-CCGATTTCTGTGAATCACGC-T-A-CACATT-ATCACG--GC-GCAATA--TGCTG--T--ATA-CAAACTCATTTCAC--A---TCGTTTTC-----AAGTTACA-TACAGCTTTTCATGAAGAAGATGGTCACTT-TATTGACTAAAAATGCCTAT-------CGATGCAATTTCTTCT-CCTTTTTTCCATATATATGTAATTGTTGATGAAAGAGT-T-------GT----TTT-------G-----AAAACATATCTTCAACTTTCGAAACATT-GATTTGGTCATAAATTATGTAGATTAGATCATGCAAGTAT----TTACACACCTGCC-----TGAATCACAGTGAAGTCCTTCGAAA-CCGAAACTGAAA-T--TA----TTTGTTATT--AC-TCG-T--ATTTCTCTAT-TTCTAATACATT---TTC-A----AGCTTTT-ATGCGCTAACAATAG-TTT----------------ATGGAACAGAGCGAAATAAGCTCTTCTTATGACATTCACCAGTAAACACATAG--AATGATGTACGATGAGCAT
gi|6 : AAATGAGAAAAAAAGATGGTTCTGTTGATTGCCGATATGAACCAGAGACTTTTTTA---A-CTGATCACCTTGAATCAC--------AAACACACTACA-CATTACCACGA-CGT--AAT--ACTATA--CTCATTTCAC--A---TTTTTTTCATTTACATTTACA-TGCACT--TTCACGAAGAAGACAGTCACATTTATTGAATAGAAATACTTACAAAAGAATGATGCC-TTTCT-TT-CCTGTTTTGCATACAA------TTGTTGACAAAAATGTAT-------CT----TCA-------ACTTCCAAAACAT--------------------T-GCTTTGGGCATGAATTATTCAGGTTAGATTGTGTAAGCAT----TTACAGAACTGCC-----CAAATCACGGC--AGTCTTTTATAA-CC-------AAA-T--TA--T-TTTTTTATT--AT-TGG-T--ATTTCTCTAT-TTCTAATACA-TTTCTTC-A----AGTTTTT-ATGCGATAATAATTT-TTTTTTAAACTGCACAGCAACCGACCAGAGCTAAATTAGC-CTTaatg
gi|7 : gTACGGCGT-A----ATACGCTGGAT--ACT-TG--CTCATTTCAC--A---TGTTTT-------CATTTACA-TACACTCTTTCACG-AGAATACAGTCACTTGTATT-------------------------ATGCCATTTCTGTT-CCTTTTTTGCGTAGAT------TTGTTGACG--------------------------------------AAAG-----------------------T-G--TTG--------TTATGAAAATNNNNNNNNNNNNNNNN----NNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN-N--NN--N-TTTT--ATT--AT-TCG-T--ATATCGCTTT-TTCTAATACATTTT-TAC-ATAAAAA-TTTT-ATGCGACAATAACAG-TTCT---AACTGCACAGCAACCGACCAGAGAAAAATGAGCTCTTATTATGATAGTCACTGGTTAACACGTAG--AATGCCGCAAAATAG
gi|8 : cACGGTCACTTGTATTGACTAAACATACTTAC-------CGATGCTATTTCCGTT----TTTTGAT-TAGAT------TTGTTGAGGAAAGTGT-TCGAAAACGTATCTTCAACTTCCTG-----AATA-----------------------TTGCCTTGGGCATAAGTTATGCAAATAAAATCATGCAAGCGA----TTACGGAACTGCCTTAATC-AATCACAGCGAAGTCATTTGAAA-ACGAAAGTGAA-----CA--T-TTTTTTAAT--AT-TTG-A--ATTTATCTAT-TTCTTATATGTTTTCTTC---------------TGC-ACA------------------------GCAACCGACCAAAGATAAATTAGCTCTTGTTATGACATTCACTGGTAAACACACGG--AATGCCGTAAGAT
gi|9 : TGTAATGCCCATTTATCACTGTAATT----TTT-TTA-AAGATTAAGCG---AAAAAG---AGC--ATATAGGTCT------------AAA----GGTTataaccataacgcaat
gi|9 : gCTCTACCTGCCACGAGTTTGAAAT-----AATAATCTTCCAAAGTAT--CATTTT-CTTATTTCACTACCCTAGGCAAATAAGAAAAAC-GAAGGTTCCGTTCATTTCCGATGTTAACCGAA-ACGTTGTTT---GCCCGAAATCCGTGTACCACGT-G-G-CGAATT-ATTATG-CAT-AAAACAAACACAGGGT--ATT-CA--CTCGTTTCACAAA---CCTCTTTC-----gtggtaaaaattgactaacgacccattattcccaactctacctgccacgagtttgaaataataatcttccaaagtatcattttcttatttcactaccctaggcaaataagaaaaacgaaggttccgttcatttccgatgttaaccgaaacgttgtttgcccgaaatccgtgtaccacgtggcgaattattatgcataaaacaaacacagggtattcactcgtttcacaaacctctttcacttgta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTAAAGTGACATTATGCCAATGGTTCACAGTAAAATTAAGATAAAAAAAGCATATATATATATATATATATATAGGTCTAAAGGTTATTGTAAACAATAGCTAATGACCCATTATTTTCAACA
Alignments
lowQualScore : 3333333333333333 111 111 222222222222 1111 11111 111111 11111111 11111 1111111 111111 7777777777777777777777777777777777777777777777777777777777 11111 22222222222 1111111
lowQualScore : 1 7777777777777777 555 000 77 1 999999999999 2222 4 0 0 44444 77 1 1 5 2 1 9 1 99999 888888 66 77 5 11 99 2 0 66 5 66 88888888 0 22222 5 0 3 6 1 3 7 0 1 0 88 6666666 5 3 0 444444 0 1 0 8888888888888888888888888888888888888888888888888888888888 8 2 1 1 9999 0 2 11111 2 3333 0 11111111111 55 3 3 55 3 3 4 6666666 4 1 3 3 8888 0 1 7 55
lowQualScore : . ................ ... ... .. . ............ .... . . . ..... .. . . . . . . . ..... ...... .. .. . .. .. . . .. . .. ........ . ..... . . . . . . . . . . .. ....... . . . ...... . . . .......................................................... . . . . .... . . ..... . .... . ........... .. . . .. . . . ....... . . . . .... . . . ..
lowQualScore : 0 3333333333333333 777 000 99 0 333333333333 1111 3 7 7 33333 99 0 0 7 5 0 4 0 88888 777777 77 55 0 66 66 2 4 99 0 99 00000000 1 55555 7 1 0 6 6 4 6 5 4 1 22 2222222 0 1 2 444444 1 4 2 7777777777777777777777777777777777777777777777777777777777 9 9 1 3 4444 2 2 11111 3 7777 1 44444444444 00 6 6 00 6 0 0 1111111 0 4 5 6 7777 2 7 2 55
consensus : TGTAATGCCCATTTNTCACTGTAATT----TTT-TTA-AAAATTAAGCG---AAAAAA---AGC--ATATNGGTCT------------AAA----GGTTCTCTACCTGCCACGAGTTCGAAAT-----AATAATCTTCCAAAGTAT--CNTTTTTCTTATTTCACTANCCTAGTCAAATAAGAAAAAC-GAAGGTTCCGTTCATTNCCGATGTGAACCGAAGACGNTGTTT---G-CCGATTTCCGTGAATCACGC-G-G-CAAATN-ATTACG-CGT-ACAACAAACGCTGGGT--ATT-CA--CTCGTTTCAC--G---TCTTTTTC-----CATTTACA-TACACTCTTTCACGNAGAAGACGGTCACTTGTATTGACTAAAAATACTTAC-------CGATGCCATTTCTGTT-CCTTTTTTACGTAGAT------TTGTTGACGAAAGTGT-T-------GT----TCA-------G-----AAAA-----------------------T-GCTTTGGGCATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACTGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTGAAA-T--TA--T-TTTTTTATT--AT-TCG-T--ATTTCTCTAT-TTCTAATACATTTTCTTC-A----AG-TTTT-ATGCGACAATAACAG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAATTAGCTCTTATTATGACATTCACCGGTAAACACATAG--AATGCCGTAAGATGGGCATT
Reference ( family-6387 ) : TGTAATGCCCATTTNTCACTGTAATT----TTT-TTA-AAAATTAAGCG---AAAAAA---AGC--ATATNGGTCT------------AAA----GGTTCTCTACCTGCCACGAGTTCGAAAT-----AATAATCTTCCAAAGTAT--CNTTTTTCTTATTTCACTANCCTAGTCAAATAAGAAAAAC-GAAGGTTCCGTTCATTNCCGATGTGAACCGAAGACGNTGTTT---G-CCGATTTCCGTGAATCACGC-G-G-CAAATN-ATTACG-CGT-ACAACAAACGCTGGGT--ATT-CA--CTCGTTTCAC--G---TCTTTTTC-----CATTTACA-TACACTCTTTCACGNAGAAGACGGTCACTTGTATTGACTAAAAATACTTAC-------CGATGCCATTTCTGTT-CCTTTTTTACGTAGAT------TTGTTGACGAAAGTGT-T-------GT----TCA-------G-----AAAA-----------------------T-GCTTTGGGCATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACTGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTGAAA-T--TA--T-TTTTTTATT--AT-TCG-T--ATTTCTCTAT-TTCTAATACATTTTCTTC-A----AG-TTTT-ATGCGACAATAACAG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAATTAGCTCTTATTATGACATTCACCGGTAAACACATAG--AATGCCGTAAGATGGGCATT
gi|1 : TAATGCACATTTATCACTGTAATT----TT--TTA-AAAATTAAGCG---AAAAAA---AGC--ATATTGGTCT------------AAA----GGTT
gi|1 : CTCTATCTGCCATGAGTTCGAAAT-----AATAATATTCCAAAATAT--ATTTTTTCTTATTTCACTAGCCTAGTCAAATAAGAAAAAC-AAAGGTTCCGTTCATTTCCGATGTAATCCGAAG-CGGTGTTT---G-CCGATTTCCGTGAATCACGT-G-GGCAAATA-ATTATG-CAT-ACAACAAACTCTGGGT--ATT-CA--CTAATTTCAC--GGGTTTTTTTTC-----CATTTACA-TACACTATTTCACGTAGCAAACGGTCACTTGTATAGATTAAAAATACT-AC-------CGATGACATTTCTGTTACTTTTTTTACGTAGAT------TTGTTCAC-AAAGTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTAGGAATAAATAATGTAAATTA-----TGC----GT----TTACGGAACAGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTAAAA-T--GC--T-TTTTTTATT--AC-TCG-T--ATTTCTCTAT-TTCCAATATATTTTCTTC-A----AT-TTTT--TTTAACAATAACCGTTTTT---AACTGCACAGCAACCGACCAGAGTGAAATTAGCTC---TTATGACATTCACCGGTAAACACA-AG--AATGCCGTTAGATAGGgtggtaaataatggcttacgacccattattccaaactctatctgccatgagttcgaaataataatattccaaaatatattttttcttatttcactagcctagtcaaataagaaaaacaaaggttccgttcatttccgatgtaatccgaagcggtgtttgccgatttccgtgaatcacgtgggcaaataattatgcatacaacaaactctgggtattcactaatttcacgggttttttttccatttacatacactatttcacgtagcaaacggtcacttgtatagattaaaaatactaccgatgacatttctgttactttttttacgtagatttgttcacaaagtgttgtttagaaaatgctttaggaataaataatgtaaattatgcgtttacggaacagcccgaatcacggcgaagtcttttgaaaccgaaactaaaatgctttttttattactcgtatttctctatttccaatatattttcttcaattttttttaacaataaccgtttttaactgcacagcaaccgaccagagtgaaattagctcttatgacattcaccggtaaacacaagaatgccgttagatagg
gi|10 : taatgcacatttatcactgtaattttttaaaaattaagcgaaaaaaagcatattggtctaaaggttgtggtaaataatggcttacgacccattattccaaaATGCCCATTTTTCACTGT----------------AAAATTAAGCAAATAAAAAA---AGT--ATGAAGGTCT------------GAA----GGTT
gi|10 : ttaaagtggtcttTCTACTTGCCACCA-TTCGAAAT-----AATAATCTTCAAAAATTT--CTTTTTTCTTATTTCACTACCTCAGTTAAATAAGAAAAAC-GAAGGTTCCGTTAATTGCTGATATGAACCGAAGACGGTGTTT---G-CCGATTTCgtgataaataatagctaatgacccattattccccaattctacttgccaccattcgaaataataatcttcaaaaatttcttttttcttatttcactacctcagttaaataagaaaaacgaaggttccgttaattgctgatatgaaccgaagacggtgtttgccgatttctttttttatcacggtgtaatacgctttcacatgtttt
gi|11 : ttaaagtggtcttatgcccatttttcactgtaaaattaagcaaataaaaaaagtatgaaggtctgaaggttgtgataaataatagctaatgacccattattccccaatAA-----------------------T-GCTTTGTGCATAAACTATACAAATTAGATCGTGCAAACGT----TTACGGAACTGCC-----CGAATCACGGC--------TTGAA---------TGAG------------TTTTTATT--AT-TCT-T--ATTTCTCTTT-TTCTAATATATTTTCATC-A----CG-TTTT-AAGCGACAATAAT-G-TTTT---AACTGTACAGGAACCGACCAGAGCGAAATAAGCTCTTATTATGACATTCACCGGTAAACtttttttatcacggtgtaatacgctttcacatgtttt
gi|12 : cgtattttttgcttttAAGCCTTT---AA-C--AAAC--AAACT--TA--TATTCTTTATTCCATGTTG-TGAAATGCTCTGA-TGGGAATG----TTCTTC-A----AG-TTTTTATGCAACAAAAACGG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAAATAGCTCGTATTATGGTATACACCGGTAAACACATAG--AATGCTGTAAGAGGCGCAT
gi|13 : ATGCCCATTTTTCTCTGT----------------AAAATTAAGCGC--AAAAAA---GGCATATATAAGTCT------------AAA----GGTTaa
gi|13 : gtgacgatCTCTACCTGCCGCCAGTTC----C-----AATAATCTTCTAAAATAT--TATTTTTCTTAATTGACTgtgatatataatggctaatgacccattatttccaactctacctgccgccagttccaataatcttctaaaatattatttttcttaattgactg
gi|15 : gtgacgatatgcccatttttctctgtaaaattaagcgcaaaaaaggcatatataagtctaaaggttgtgatatataatggctaatgacccattatttccaaACAATAATAG-TTTT---AATTGCACAGCATCTGACCAGAGTTAAATTAGCTTTTATTATGCCATTCAT---------CATAG--AATGTTGTAATATGGGCATg
gi|16 : gttttttttttACCAGAGCAAAATAAGCTTTTATTATGACTTACACCGGTAAACAAATGGATAATACTGCAAGAAAGGCATa
gi|17 : TCTTTTGAAAACCAAAACTGAAA-T--TCCTT-TTTTTTATT--AT-TCG-T--ATTTCTCTATATTCaatg
gi|2 : TGTAATGCCCATTTGTCACTGTAATTATTTTTT-TTA-AAAATTAAGCG---AAAAAA---AGC--ATATTGGTCT------------AAA----GGTTCTTTACCTGCCACGAGTTCGAAAT-----AATAATCATCCAAAGAAT--CATTTTTCTTATTTCACTAGCCTAGTCAAATAAGGAAAAC-GAAAGTTCTGTTCATTTTCGATGTGAACCGAAG-CGGTGTTT---G-CCGATTTGAGTGAATCACAT-GCG-CAAATA-ATTATG-CAT-ACAACAAACACTGGGT--ATC-CA--CTCGTTTCAC--G---GGTTTTTC-----CATTTACA-T--ACTCTTTCGCGTAGCAGA----CACTTATA--AAATAAAAATAC-TAC-------CGATGATATTTTTGTT-CCGTTTTTACGTAGAT------TAGTTGACGAAAGTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTAAGAATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACCGCC-----CGAGTCATGGCGAAGTCTTTTGAAA-CCGAAACTAAAA-TGCTA--T-TTTTTTATT--AC-TCG-T--ATTTCGCTAT-TTCTAATATATTTTCTCC-A----AA-TTTT-ATGCAGCAATAACAG-TTTA---AACTGCATAGCAACCGACCAGAGCAAAATTAGCTCTTATTATGACATTCACCGGTAAACACA-AG--AATGCCGTAAGATGGGCATT
gi|3 : ATT----TTTATTATAAAATCAAGCG---AAAAAACAAAAC--GTATAAGTCTAAAGGTTGTGGTAAATAATGGTTAACGACTTAATAT---TTCTAACTCTACCAATAGTCTTCCAAAATATGTTTTTTTTCTTACTTGACTGACCCAGTGAAATA------------------------TGCCGCTATGAACTGAAGACGTTTTTTTTTA-TCGATTTCCGAGAATCACGC-T-A-CATATT-ACCACG--GT-GTTATA--TTCTTGATTAATT-C----TCGTTTCAC--A---TCGTTTGT-----CATTTACA-CACACTCTTTCACGAAGAAGAC---TATTT--ATTGACTAAAA-TACTTAC-------CGATGCTATTTCTGTT-CC------ATGTTGTT------TTG------AAAATGTAT-------CT----TCGACTTCCGG-----AACA-----------------------TTGCTTTGGGCATAAATTAAGCAAATTAGATCGTGCAATCTTATAATCATGGG------------GAATCACAGTGAAATCTTTTGAAA-TAAAAAATGAAA-C--GA----TTTTTTATT--TT-TGGAT--TTTTTTTTAT-TTCTTATACACTTTCTAC-A----AGTTTTT-ATGCGACAATAATAG-TTTT---AACTGTACAGCAACCGACT-TAGCGAAATAAGC---TATTGTGACATTCACCGGTAAACACCTAG--TATGTTGTAAGATGGTCATTacg
gi|4 : taaacttgcgctctgcgcTAAGCG---AAAAAA---AGC--ATATTGGTCT------------TAA----GGTT
gi|4 : agaaCTGTGCCTGCCATGAGTTCGAAAT-----AATAATCTTCCAAAGTAT--CATTTTTCTTATTTCACTAACCTAGTCAAATAAGAAAAGC-GAAGGTTCCTTTCATTTACGATGTGAACCGAAG-CGGTGTTT---G-CTGATTTCAGTGAATCACGTGG-G-CAAACA-ATTATG-CAT-ACAACAAACACTGGGT--AGT-CA--CTCGTTTCAC--G---T-TTTTTT-----CATTTACATTACACTCTTCCACGTAGTAGACGATCACCTGTATAGACTAAAAATAC-TAC-------CGATGACATTTCTGTT-CATTTTTTATGTAGAT------TTGGTGACGAAATTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTACGAATAAATTATGCAAATTACATTGTGCAAGCAT----TTACAGAACAGCC-----GGAATCACAGCGAAGTCTTTTGAAA-CCGAAACTAAAA-T--GC--T-TTTTTTGTA--AC-TCG-T---TTT-----T-TTCTAATATATTTTCTTCAA----AA-TTTT-ATGCAGCAATAACAG-TTTA---AACTGCACAGCAACTGACCAGAGTGAAATTGGCTCTTATTATGACATTCACCCGTAAACACA-AG--AATgtggtaaataatggctaatgacccatttttcctaactgtgcctgccatgagttcgaaataataatcttccaaagtatcatttttcttatttcactaacctagtcaaataagaaaagcgaaggttcctttcatttacgatgtgaaccgaagcggtgtttgctgatttcagtgaatcacgtgggcaaacaattatgcatacaacaaacactgggtagtcactcgtttcacgtttttttcatttacattacactcttccacgtagtagacgatcacctgtatagactaaaaatactaccgatgacatttctgttcattttttatgtagatttggtgacgaaattgttgtttagaaaatgctttacgaataaattatgcaaattacattgtgcaagcatttacagaacagccggaatcacagcgaagtcttttgaaaccgaaactaaaatgctttttttgtaactcgtttttttctaatatattttcttcaaaattttatgcagcaataacagtttaaactgcacagcaactgaccagagtgaaattggctcttattatgacattcacccgtaaacacaagaat
gi|5 : agaataagcgaaaaaaagcatattggtcttaaggttgtggtaaataatggctaatgacccatttttcctaaCGTTAATTACCAGTATGACCTGAAGACGTATTTT---A-CCGATTTCTGTGAATCACGC-T-A-CACATT-ATCACG--GC-GCAATA--TGCTG--T--ATA-CAAACTCATTTCAC--A---TCGTTTTC-----AAGTTACA-TACAGCTTTTCATGAAGAAGATGGTCACTT-TATTGACTAAAAATGCCTAT-------CGATGCAATTTCTTCT-CCTTTTTTCCATATATATGTAATTGTTGATGAAAGAGT-T-------GT----TTT-------G-----AAAACATATCTTCAACTTTCGAAACATT-GATTTGGTCATAAATTATGTAGATTAGATCATGCAAGTAT----TTACACACCTGCC-----TGAATCACAGTGAAGTCCTTCGAAA-CCGAAACTGAAA-T--TA----TTTGTTATT--AC-TCG-T--ATTTCTCTAT-TTCTAATACATT---TTC-A----AGCTTTT-ATGCGCTAACAATAG-TTT----------------ATGGAACAGAGCGAAATAAGCTCTTCTTATGACATTCACCAGTAAACACATAG--AATGATGTACGATGAGCAT
gi|6 : AAATGAGAAAAAAAGATGGTTCTGTTGATTGCCGATATGAACCAGAGACTTTTTTA---A-CTGATCACCTTGAATCAC--------AAACACACTACA-CATTACCACGA-CGT--AAT--ACTATA--CTCATTTCAC--A---TTTTTTTCATTTACATTTACA-TGCACT--TTCACGAAGAAGACAGTCACATTTATTGAATAGAAATACTTACAAAAGAATGATGCC-TTTCT-TT-CCTGTTTTGCATACAA------TTGTTGACAAAAATGTAT-------CT----TCA-------ACTTCCAAAACAT--------------------T-GCTTTGGGCATGAATTATTCAGGTTAGATTGTGTAAGCAT----TTACAGAACTGCC-----CAAATCACGGC--AGTCTTTTATAA-CC-------AAA-T--TA--T-TTTTTTATT--AT-TGG-T--ATTTCTCTAT-TTCTAATACA-TTTCTTC-A----AGTTTTT-ATGCGATAATAATTT-TTTTTTAAACTGCACAGCAACCGACCAGAGCTAAATTAGC-CTTaatg
gi|7 : gTACGGCGT-A----ATACGCTGGAT--ACT-TG--CTCATTTCAC--A---TGTTTT-------CATTTACA-TACACTCTTTCACG-AGAATACAGTCACTTGTATT-------------------------ATGCCATTTCTGTT-CCTTTTTTGCGTAGAT------TTGTTGACG--------------------------------------AAAG-----------------------T-G--TTG--------TTATGAAAATNNNNNNNNNNNNNNNN----NNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN-N--NN--N-TTTT--ATT--AT-TCG-T--ATATCGCTTT-TTCTAATACATTTT-TAC-ATAAAAA-TTTT-ATGCGACAATAACAG-TTCT---AACTGCACAGCAACCGACCAGAGAAAAATGAGCTCTTATTATGATAGTCACTGGTTAACACGTAG--AATGCCGCAAAATAG
gi|8 : cACGGTCACTTGTATTGACTAAACATACTTAC-------CGATGCTATTTCCGTT----TTTTGAT-TAGAT------TTGTTGAGGAAAGTGT-TCGAAAACGTATCTTCAACTTCCTG-----AATA-----------------------TTGCCTTGGGCATAAGTTATGCAAATAAAATCATGCAAGCGA----TTACGGAACTGCCTTAATC-AATCACAGCGAAGTCATTTGAAA-ACGAAAGTGAA-----CA--T-TTTTTTAAT--AT-TTG-A--ATTTATCTAT-TTCTTATATGTTTTCTTC---------------TGC-ACA------------------------GCAACCGACCAAAGATAAATTAGCTCTTGTTATGACATTCACTGGTAAACACACGG--AATGCCGTAAGAT
gi|9 : TGTAATGCCCATTTATCACTGTAATT----TTT-TTA-AAGATTAAGCG---AAAAAG---AGC--ATATAGGTCT------------AAA----GGTTataaccataacgcaat
gi|9 : gCTCTACCTGCCACGAGTTTGAAAT-----AATAATCTTCCAAAGTAT--CATTTT-CTTATTTCACTACCCTAGGCAAATAAGAAAAAC-GAAGGTTCCGTTCATTTCCGATGTTAACCGAA-ACGTTGTTT---GCCCGAAATCCGTGTACCACGT-G-G-CGAATT-ATTATG-CAT-AAAACAAACACAGGGT--ATT-CA--CTCGTTTCACAAA---CCTCTTTC-----gtggtaaaaattgactaacgacccattattcccaactctacctgccacgagtttgaaataataatcttccaaagtatcattttcttatttcactaccctaggcaaataagaaaaacgaaggttccgttcatttccgatgttaaccgaaacgttgtttgcccgaaatccgtgtaccacgtggcgaattattatgcataaaacaaacacagggtattcactcgtttcacaaacctctttcacttgta
blockSeqs : T AATTATTTTTTTTA AAT CAA AT A AAAGGTTGTGGT TAAT C CTACC GT T C A A G A G TTTA TGCG AC GC T CA AA A TA A AA AAACC ATTTA T C T C G A A TT AAAAGAA . G ATGTAA G TGTTTTGAAAACATATCTTCAACTTTCGAAACAT T T C G ATAA T TTAAT G ACCA ACTTATA CC G A GA A T A TAAAAA T G G . TTTA A T AT
blockSeqs : T AATTTTTTTA C . . A . . C . . A G . C T A G GC TGGG A C . TT AA T . . . GGG . . C A A G G C CT . . T . G TCGAAAACGTATCTTCAACTTCCTGAATA T A A G . C . G CCG ATTCCTT . . . . . T . AGT . A A . T T T .
blockSeqs : G . . . . T . . G . . A A . C G A T G CTA T C . CA TA A . . . ATC . . C T T A T C TT . . T . G ATCTTCAACTTCCAAAACAT . G C G . A . G TAA ATGCTAT . . . . . C . AGC . A A . T T T .
blockSeqs : A . . . . A . . G . . T A . A T A G G CTA A C . CA AA G . . . ATC . . T A A A G C TT . . T . A ATCTTCGACTTCCGGAACA . C A C . T . G CCG ATGCT . . . . . T . AGT . G A . T A T .
blockSeqs : . . . T . . G . . A C . G A A T G TGG T C . CC A G . . . ATT . . C A A G G A T . . T . G TGTTTAGAAAA . G C G . T . N CCG ATTAT . . . . . C . CG . A A . A T T .
blockSeqs : . . . A . . . . . A . C G . T A . T . . AA . G . . . ATG . . . . A . . C T . . . . G TGTTTAGAAAA . G C G . N . G NNN NNNNN . . . . . C . AG . G A . T A T .
blockSeqs : . T . T A . . . . A . . . GT . . . . . . . . . . AAAG . G C N . T . . ACG ACGA . . . . . C . AA . G T . A T C .
blockSeqs : . . . A . . . . CC ATTA . . . . . T . AA . G A . T A . .
blockSeqs : C CAT . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . G
blockSeqs : T
blockSeqCons : **************** CGG*** ATN***** TT ATTAT******
originalCons : TGTAATGCCCATTTNTCACTGTAATT----TTT-TTA-AAAATTAAGCG---AAAAAA---AGC--ATATNGGTCT------------AAA----GGTTCTCTACCTGCCACGAGTTCGAAAT-----AATAATCTTCCAAAGTAT--CNTTTTTCTTATTTCACTANCCTAGTCAAATAAGAAAAAC-GAAGGTTCCGTTCATTNCCGATGTGAACCGAAGACGNTGTTT---G-CCGATTTCCGTGAATCACGC-G-G-CAAATN-ATTACG-CGT-ACAACAAACGCTGGGT--ATT-CA--CTCGTTTCAC--G---TCTTTTTC-----CATTTACA-TACACTCTTTCACGNAGAAGACGGTCACTTGTATTGACTAAAAATACTTAC-------CGATGCCATTTCTGTT-CCTTTTTTACGTAGAT------TTGTTGACGAAAGTGT-T-------GT----TCA-------G-----AAAA-----------------------T-GCTTTGGGCATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACTGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTGAAA-T--TA--T-TTTTTTATT--AT-TCG-T--ATTTCTCTAT-TTCTAATACATTTTCTTC-A----AG-TTTT-ATGCGACAATAACAG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAATTAGCTCTTATTATGACATTCACCGGTAAACACATAG--AATGCCGTAAGATGGGCATT
finalCons : TGTAATGCCCATTTNTCACTGT----------------AAAATTAAGCG---AAAAAA---AGC--ATATNGGTCT------------AAA----GGTTCTCTACCTGCCACGAGTTCGAAAT-----AATAATCTTCCAAAGTAT--CNTTTTTCTTATTTCACTANCCTAGTCAAATAAGAAAAAC-GAAGGTTCCGTTCATTNCCGATGTGAACCGAAGACGNTGTTT---G-CCGATTTCCGTGAATCACGCGG---CAAATN-ATTACG-CGT-ACAACAAACGCTGGGT--ATT-CA--CTCGTTTCACATN-----TTTTTC-----CATTTACA-TACACTCTTTCACGNAGAAGACGGTCACTTGTATTGACTAAAAATACTTAC-------CGATGCCATTTCTGTT-CCTTTTTTACGTAGAT------TTGTTGACGAAAGTGT-T-------GT----TCA-------G-----AAAA-----------------------T-GCTTTGGGCATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACTGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTGAAATTAT------TTTTTTATT--AT-TCG-T--ATTTCTCTAT-TTCTAATACATTTTCTTC-A----AG-TTTT-ATGCGACAATAACAG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAATTAGCTCTTATTATGACATTCACCGGTAAACACATAG--AATGCCGTAAGATGGGCATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTAAAGTGACATTATGCCAATGGTTCACAGTAAAATTAAGATAAAAAAAGCATATATATATATATATATATATAGGTCTAAAGGTTATTGTAAACAATAGCTAATGACCCATTATTTTCAACA
Alignments
lowQualScore : 88888888888888 111 444444444444444444 222222222222 1111 11111 111111 111111 1111111 1111111 111111 7777777777777777777777777777777777777777777777777777777777 11111 22222222222 1111111
lowQualScore : 1 11111111111111 333 888 333333333333333333 1 555555555555 0000 4 0 0 44444 77 1 1 5 2 1 9 1 99999 888888 66 77 5 11 99 2 0 66 5 66 222222 1 4444444 5 0 3 6 1 3 7 0 1 0 88 6666666 5 3 0 444444 0 1 0 8888888888888888888888888888888888888888888888888888888888 8 2 1 1 9999 0 2 11111 2 3333 0 11111111111 55 3 3 55 3 3 4 6666666 4 1 3 3 8888 0 1 7 55
lowQualScore : . .............. ... ... .................. . ............ .... . . . ..... .. . . . . . . . ..... ...... .. .. . .. .. . . .. . .. ...... . ....... . . . . . . . . . . .. ....... . . . ...... . . . .......................................................... . . . . .... . . ..... . .... . ........... .. . . .. . . . ....... . . . . .... . . . ..
lowQualScore : 0 44444444444444 888 888 888888888888888888 0 666666666666 6666 3 7 7 33333 99 0 0 7 5 0 4 0 88888 777777 77 55 0 66 66 2 4 99 0 99 222222 0 0000000 7 1 0 6 6 4 6 5 4 1 22 2222222 0 1 2 444444 1 4 2 7777777777777777777777777777777777777777777777777777777777 9 9 1 3 4444 2 2 11111 3 7777 1 44444444444 00 6 6 00 6 0 0 1111111 0 4 5 6 7777 2 7 2 55
consensus : TGTAATGCCCATTTTTCACTGTAATT-TTT--------AATTAAGCG---AAAAAA---AGC------------------ATATAGGTCT------------AAA----GGTTCTCTACCTGCCACGAGTTCGAAAT-----AATAATCTTCCAAAGTAT--CNTTTTTCTTATTTCACTANCCTAGTCAAATAAGAAAAAC-GAAGGTTCCGTTCATTNCCGATGTGAACCGAAGACGNTGTTT---G-CCGATTTCCGTGAATCACGC-G-G-CAAATN-ATTACG-CGT-ACAACAAACGCTGGGT--ATT-CA--CTCGTTTCAC--G---TCTTTTTC-----CATTTACA-TACACTCTTTCACGNAGAAGACGGTCACTTGTATTGACTAAAAATACTTAC-------CGATGCCATTTCTGTT-CCTTTTTTACGTAGAT------TTGTTGACGAAAGTGT-T-------GT----TCA-------G-----AAAA-----------------------T-GCTTTGGGCATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACTGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTGAAA-T--TA--T-TTTTTTATT--AT-TCG-T--ATTTCTCTAT-TTCTAATACATTTTCTTC-A----AG-TTTT-ATGCGACAATAACAG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAATTAGCTCTTATTATGACATTCACCGGTAAACACATAG--AATGCCGTAAGATGGGCATT
Reference ( family-6387 ) : TGTAATGCCCATTTNTCACTGTAA--------------AATTAAGCG---AAAAAA---AGC------------------ATATNGGTCT------------AAA----GGTTCTCTACCTGCCACGAGTTCGAAAT-----AATAATCTTCCAAAGTAT--CNTTTTTCTTATTTCACTANCCTAGTCAAATAAGAAAAAC-GAAGGTTCCGTTCATTNCCGATGTGAACCGAAGACGNTGTTT---G-CCGATTTCCGTGAATCACGC-G-G-CAAATN-ATTACG-CGT-ACAACAAACGCTGGGT--ATT-CA--CTCGTTTCAC--A---TNTTTTTC-----CATTTACA-TACACTCTTTCACGNAGAAGACGGTCACTTGTATTGACTAAAAATACTTAC-------CGATGCCATTTCTGTT-CCTTTTTTACGTAGAT------TTGTTGACGAAAGTGT-T-------GT----TCA-------G-----AAAA-----------------------T-GCTTTGGGCATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACTGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTGAAA-T--TA--T-TTTTTTATT--AT-TCG-T--ATTTCTCTAT-TTCTAATACATTTTCTTC-A----AG-TTTT-ATGCGACAATAACAG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAATTAGCTCTTATTATGACATTCACCGGTAAACACATAG--AATGCCGTAAGATGGGCATT
gi|1 : TAATGCACATTTATCACTGTAATTTTTTAAA-----AATTAAGCG---AAAAAA---AGC------------------ATATTGGTCT------------AAA----GGTT
gi|1 : CTCTATCTGCCATGAGTTCGAAAT-----AATAATATTCCAAAATAT--ATTTTTTCTTATTTCACTAGCCTAGTCAAATAAGAAAAAC-AAAGGTTCCGTTCATTTCCGATGTAATCCGAAG-CGGTGTTT---G-CCGATTTCCGTGAATCACGT-G-GGCAAATA-ATTATG-CAT-ACAACAAACTCTGGGT--ATT-CA--CTAATTTCAC--GGGTTTTTTTTC-----CATTTACA-TACACTATTTCACGTAGCAAACGGTCACTTGTATAGATTAAAAATACT-AC-------CGATGACATTTCTGTTACTTTTTTTACGTAGAT------TTGTTCAC-AAAGTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTAGGAATAAATAATGTAAATTA-----TGC----GT----TTACGGAACAGCC-----CGAATCACGGCGAAGTCTTTTGAAA-CCGAAACTAAAA-T--GC--T-TTTTTTATT--AC-TCG-T--ATTTCTCTAT-TTCCAATATATTTTCTTC-A----AT-TTTT--TTTAACAATAACCGTTTTT---AACTGCACAGCAACCGACCAGAGTGAAATTAGCTC---TTATGACATTCACCGGTAAACACA-AG--AATGCCGTTAGATAGGgtggtaaataatggcttacgacccattattccaaactctatctgccatgagttcgaaataataatattccaaaatatattttttcttatttcactagcctagtcaaataagaaaaacaaaggttccgttcatttccgatgtaatccgaagcggtgtttgccgatttccgtgaatcacgtgggcaaataattatgcatacaacaaactctgggtattcactaatttcacgggttttttttccatttacatacactatttcacgtagcaaacggtcacttgtatagattaaaaatactaccgatgacatttctgttactttttttacgtagatttgttcacaaagtgttgtttagaaaatgctttaggaataaataatgtaaattatgcgtttacggaacagcccgaatcacggcgaagtcttttgaaaccgaaactaaaatgctttttttattactcgtatttctctatttccaatatattttcttcaattttttttaacaataaccgtttttaactgcacagcaaccgaccagagtgaaattagctcttatgacattcaccggtaaacacaagaatgccgttagatagg
gi|10 : taatgcacatttatcactgtaattttttaaaaattaagcgaaaaaaagcatattggtctaaaggttgtggtaaataatggcttacgacccattattccaaaATGCCCATTTTTCACTGTAA--------------AATTAAGCAAATAAAAAA---AGT------------------ATGAAGGTCT------------GAA----GGTT
gi|10 : ttaaagtggtcttTCTACTTGCCACCA-TTCGAAAT-----AATAATCTTCAAAAATTT--CTTTTTTCTTATTTCACTACCTCAGTTAAATAAGAAAAAC-GAAGGTTCCGTTAATTGCTGATATGAACCGAAGACGGTGTTT---G-CCGATTTCgtgataaataatagctaatgacccattattccccaattctacttgccaccattcgaaataataatcttcaaaaatttcttttttcttatttcactacctcagttaaataagaaaaacgaaggttccgttaattgctgatatgaaccgaagacggtgtttgccgatttctttttttatcacggtgtaatacgctttcacatgtttt
gi|11 : ttaaagtggtcttatgcccatttttcactgtaaaattaagcaaataaaaaaagtatgaaggtctgaaggttgtgataaataatagctaatgacccattattccccaatAA-----------------------T-GCTTTGTGCATAAACTATACAAATTAGATCGTGCAAACGT----TTACGGAACTGCC-----CGAATCACGGC--------TTGAA---------TGAG------------TTTTTATT--AT-TCT-T--ATTTCTCTTT-TTCTAATATATTTTCATC-A----CG-TTTT-AAGCGACAATAAT-G-TTTT---AACTGTACAGGAACCGACCAGAGCGAAATAAGCTCTTATTATGACATTCACCGGTAAACtttttttatcacggtgtaatacgctttcacatgtttt
gi|12 : cgtattttttgcttttAAGCCTTT---AA-C--AAAC--AAACT--TA--TATTCTTTATTCCATGTTG-TGAAATGCTCTGA-TGGGAATG----TTCTTC-A----AG-TTTTTATGCAACAAAAACGG-TTTT---AACTGCACAGCAACCGACCAGAGCGAAAATAGCTCGTATTATGGTATACACCGGTAAACACATAG--AATGCTGTAAGAGGCGCAT
gi|13 : ATGCCCATTTTTCTCTGTAA--------------AATTAAGCGC--AAAAAA---GGCAT----------------ATATAAGTCT------------AAA----GGTTaa
gi|13 : gtgacgatCTCTACCTGCCGCCAGTTC----C-----AATAATCTTCTAAAATAT--TATTTTTCTTAATTGACTgtgatatataatggctaatgacccattatttccaactctacctgccgccagttccaataatcttctaaaatattatttttcttaattgactg
gi|14 : gtgacgatatgcccatttttctctgtaaaattaagcgcaaaaaaggcatatataagtctaaaggttgtgatatataatggctaatgacccattatttccaaATGCCAATGGTTCACAGTAA--------------AATTAAGAT---AAAAAA---AGCATATATATATATATATATATATAGGTCT------------AAA----GGTTg
gi|15 : ttaaagtgacattACAATAATAG-TTTT---AATTGCACAGCATCTGACCAGAGTTAAATTAGCTTTTATTATGCCATTCAT---------CATAG--AATGTTGTAATATGGGCATattgtaaacaatagctaatgacccattattttcaaca
gi|16 : gttttttttttACCAGAGCAAAATAAGCTTTTATTATGACTTACACCGGTAAACAAATGGATAATACTGCAAGAAAGGCATa
gi|17 : TCTTTTGAAAACCAAAACTGAAA-T--TCCTT-TTTTTTATT--AT-TCG-T--ATTTCTCTATATTCaatg
gi|2 : TGTAATGCCCATTTGTCACTGTAATTATTTTTTTTAAAAATTAAGCG---AAAAAA---AGC------------------ATATTGGTCT------------AAA----GGTTCTTTACCTGCCACGAGTTCGAAAT-----AATAATCATCCAAAGAAT--CATTTTTCTTATTTCACTAGCCTAGTCAAATAAGGAAAAC-GAAAGTTCTGTTCATTTTCGATGTGAACCGAAG-CGGTGTTT---G-CCGATTTGAGTGAATCACAT-GCG-CAAATA-ATTATG-CAT-ACAACAAACACTGGGT--ATC-CA--CTCGTTTCAC--G---GGTTTTTC-----CATTTACA-T--ACTCTTTCGCGTAGCAGA----CACTTATA--AAATAAAAATAC-TAC-------CGATGATATTTTTGTT-CCGTTTTTACGTAGAT------TAGTTGACGAAAGTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTAAGAATAAATTATGCAAATTAGATCGTGCAAGCGT----TTACGGAACCGCC-----CGAGTCATGGCGAAGTCTTTTGAAA-CCGAAACTAAAA-TGCTA--T-TTTTTTATT--AC-TCG-T--ATTTCGCTAT-TTCTAATATATTTTCTCC-A----AA-TTTT-ATGCAGCAATAACAG-TTTA---AACTGCATAGCAACCGACCAGAGCAAAATTAGCTCTTATTATGACATTCACCGGTAAACACA-AG--AATGCCGTAAGATGGGCATT
gi|3 : TGCGCATTTTT-ATTATAA--------------AATCAAGCG---AAAAAACAAAAC------------------GTATAAGTCTAAAGGTTGTGGTAAATAATGGTTAACGACTTAATAT---TTCTAACTCTACCAATAGTCTTCCAAAATATGTTTTTTTTCTTACTTGACTGACCCAGTGAAATA------------------------TGCCGCTATGAACTGAAGACGTTTTTTTTTA-TCGATTTCCGAGAATCACGC-T-A-CATATT-ACCACG--GT-GTTATA--TTCTTGATTAATT-C----TCGTTTCAC--A---TCGTTTGT-----CATTTACA-CACACTCTTTCACGAAGAAGAC---TATTT--ATTGACTAAAA-TACTTAC-------CGATGCTATTTCTGTT-CC------ATGTTGTT------TTG------AAAATGTAT-------CT----TCGACTTCCGG-----AACA-----------------------TTGCTTTGGGCATAAATTAAGCAAATTAGATCGTGCAATCTTATAATCATGGG------------GAATCACAGTGAAATCTTTTGAAA-TAAAAAATGAAA-C--GA----TTTTTTATT--TT-TGGAT--TTTTTTTTAT-TTCTTATACACTTTCTAC-A----AGTTTTT-ATGCGACAATAATAG-TTTT---AACTGTACAGCAACCGACT-TAGCGAAATAAGC---TATTGTGACATTCACCGGTAAACACCTAG--TATGTTGTAAGATGGTCATTacg
gi|4 : taaacttgcgctcTAAGCG---AAAAAA---AGC------------------ATATTGGTCT------------TAA----GGTT
gi|4 : agaaCTGTGCCTGCCATGAGTTCGAAAT-----AATAATCTTCCAAAGTAT--CATTTTTCTTATTTCACTAACCTAGTCAAATAAGAAAAGC-GAAGGTTCCTTTCATTTACGATGTGAACCGAAG-CGGTGTTT---G-CTGATTTCAGTGAATCACGTGG-G-CAAACA-ATTATG-CAT-ACAACAAACACTGGGT--AGT-CA--CTCGTTTCAC--G---TTTTTTT------CATTTACATTACACTCTTCCACGTAGTAGACGATCACCTGTATAGACTAAAAATAC-TAC-------CGATGACATTTCTGTT-CATTTTTTATGTAGAT------TTGGTGACGAAATTGT-T-------GT----TTA-------G-----AAAA-----------------------T-GCTTTACGAATAAATTATGCAAATTACATTGTGCAAGCAT----TTACAGAACAGCC-----GGAATCACAGCGAAGTCTTTTGAAA-CCGAAACTAAAA-T--GC--T-TTTTTTGTA--AC-TCG-T---TTT-----T-TTCTAATATATTTTCTTCAA----AA-TTTT-ATGCAGCAATAACAG-TTTA---AACTGCACAGCAACTGACCAGAGTGAAATTGGCTCTTATTATGACATTCACCCGTAAACACA-AG--AATgtggtaaataatggctaatgacccatttttcctaactgtgcctgccatgagttcgaaataataatcttccaaagtatcatttttcttatttcactaacctagtcaaataagaaaagcgaaggttcctttcatttacgatgtgaaccgaagcggtgtttgctgatttcagtgaatcacgtgggcaaacaattatgcatacaacaaacactgggtagtcactcgtttcacgtttttttcatttacattacactcttccacgtagtagacgatcacctgtatagactaaaaatactaccgatgacatttctgttcattttttatgtagatttggtgacgaaattgttgtttagaaaatgctttacgaataaattatgcaaattacattgtgcaagcatttacagaacagccggaatcacagcgaagtcttttgaaaccgaaactaaaatgctttttttgtaactcgtttttttctaatatattttcttcaaaattttatgcagcaataacagtttaaactgcacagcaactgaccagagtgaaattggctcttattatgacattcacccgtaaacacaagaat
gi|5 : agaataagcgaaaaaaagcatattggtcttaaggttgtggtaaataatggctaatgacccatttttcctaaCGTTAATTACCAGTATGACCTGAAGACGTATTTT---A-CCGATTTCTGTGAATCACGC-T-A-CACATT-ATCACG--GC-GCAATA--TGCTG--T--ATA-CAAACTCATTTCAC--A---TCGTTTTC-----AAGTTACA-TACAGCTTTTCATGAAGAAGATGGTCACTT-TATTGACTAAAAATGCCTAT-------CGATGCAATTTCTTCT-CCTTTTTTCCATATATATGTAATTGTTGATGAAAGAGT-T-------GT----TTT-------G-----AAAACATATCTTCAACTTTCGAAACATT-GATTTGGTCATAAATTATGTAGATTAGATCATGCAAGTAT----TTACACACCTGCC-----TGAATCACAGTGAAGTCCTTCGAAA-CCGAAACTGAAA-T--TA----TTTGTTATT--AC-TCG-T--ATTTCTCTAT-TTCTAATACATT---TTC-A----AGCTTTT-ATGCGCTAACAATAG-TTT----------------ATGGAACAGAGCGAAATAAGCTCTTCTTATGACATTCACCAGTAAACACATAG--AATGATGTACGATGAGCAT
gi|6 : AAATGAGAAAAAAAGATGGTTCTGTTGATTGCCGATATGAACCAGAGACTTTTTTA---A-CTGATCACCTTGAATCAC--------AAACACACTACA-CATTACCACGA-CGT--AAT--ACTATA--CTCATTTCAC--A---TTTTTTTCATTTACATTTACA-TGCACT--TTCACGAAGAAGACAGTCACATTTATTGAATAGAAATACTTACAAAAGAATGATGCC-TTTCT-TT-CCTGTTTTGCATACAA------TTGTTGACAAAAATGTAT-------CT----TCA-------ACTTCCAAAACAT--------------------T-GCTTTGGGCATGAATTATTCAGGTTAGATTGTGTAAGCAT----TTACAGAACTGCC-----CAAATCACGGC--AGTCTTTTATAA-CC-------AAA-T--TA--T-TTTTTTATT--AT-TGG-T--ATTTCTCTAT-TTCTAATACA-TTTCTTC-A----AGTTTTT-ATGCGATAATAATTT-TTTTTTAAACTGCACAGCAACCGACCAGAGCTAAATTAGC-CTTaatg
gi|7 : gTACGGCGT-A----ATACGCTGGAT--ACT-TG--CTCATTTCAC--A---TGTTTT-------CATTTACA-TACACTCTTTCACG-AGAATACAGTCACTTGTATT-------------------------ATGCCATTTCTGTT-CCTTTTTTGCGTAGAT------TTGTTGACG--------------------------------------AAAG-----------------------T-G--TTG--------TTATGAAAATNNNNNNNNNNNNNNNN----NNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNN-N--NN--N-TTTT--ATT--AT-TCG-T--ATATCGCTTT-TTCTAATACATTTT-TAC-ATAAAAA-TTTT-ATGCGACAATAACAG-TTCT---AACTGCACAGCAACCGACCAGAGAAAAATGAGCTCTTATTATGATAGTCACTGGTTAACACGTAG--AATGCCGCAAAATAG
gi|8 : cACGGTCACTTGTATTGACTAAACATACTTAC-------CGATGCTATTTCCGTT----TTTTGAT-TAGAT------TTGTTGAGGAAAGTGT-TCGAAAACGTATCTTCAACTTCCTG-----AATA-----------------------TTGCCTTGGGCATAAGTTATGCAAATAAAATCATGCAAGCGA----TTACGGAACTGCCTTAATC-AATCACAGCGAAGTCATTTGAAA-ACGAAAGTGAA-----CA--T-TTTTTTAAT--AT-TTG-A--ATTTATCTAT-TTCTTATATGTTTTCTTC---------------TGC-ACA------------------------GCAACCGACCAAAGATAAATTAGCTCTTGTTATGACATTCACTGGTAAACACACGG--AATGCCGTAAGAT
gi|9 : TGTAATGCCCATTTATCACTGTAATTTTTTTAAA----GATTAAGCG---AAAAAG---AGC------------------ATATAGGTCT------------AAA----GGTTataaccataacgcaat
gi|9 : gCTCTACCTGCCACGAGTTTGAAAT-----AATAATCTTCCAAAGTAT--CATTTT-CTTATTTCACTACCCTAGGCAAATAAGAAAAAC-GAAGGTTCCGTTCATTTCCGATGTTAACCGAA-ACGTTGTTT---GCCCGAAATCCGTGTACCACGT-G-G-CGAATT-ATTATG-CAT-AAAACAAACACAGGGT--ATT-CA--CTCGTTTCACAAA---CCTCTTTC-----gtggtaaaaattgactaacgacccattattcccaactctacctgccacgagtttgaaataataatcttccaaagtatcattttcttatttcactaccctaggcaaataagaaaaacgaaggttccgttcatttccgatgttaaccgaaacgttgtttgcccgaaatccgtgtaccacgtggcgaattattatgcataaaacaaacacagggtattcactcgtttcacaaacctctttcacttgta