lowQualScore : 11111111
lowQualScore : 3333 66666666 66666666 11111111 222 22 1 1 1 555555555 22 3333 0 22
lowQualScore : .... ........ ........ ........ ... .. . . . ......... .. .... . ..
lowQualScore : 5555 00000000 00000000 66666666 888 22 6 6 5 999999999 00 0000 9 00
consensus : GGGGCCGGCAAAAGCA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTT----TACC--AGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
Reference ( gi|6 ) : GGGGCCGGCAAAAGCA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTT----TGCC--AGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
gi|16 : GGGGCCGGCAAAAGCA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTT----TGCC--AGTAACTAGTCCGTCGGACGAGTAAACCTTTTG
gi|12 : GGGGCCGGCAAAAGCA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTT----TGCC--AGTAACTAGTCCGTCGGACGAGTAAACCTTTTG
gi|15 : GGGGCCGGCAAAAGCA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTT----TGCC--AGTAACTAGTCCATCGGACGAGTAAACCTTTT
gi|9 : aGGGGCCGGCAAAAGCA----CT--------C--------GTC--------C---TA--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--ATTT----TGCC--AGTAACTAGTCCGTCGGACAAGTAAACCTTTTG
gi|7 : GGGGCCGGCAAAAGCA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CAGACG---------AGTAA--TTTT----TGCC--AGTAACTAGTCCGTCGGATGAGTTAACCTTTTGG
gi|14 : GGGGCCGGCAAAAGCA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-GGGACA---------AGTGA--TTTT----TACC--AGTAACTAGTCTGTCGGACGAGTAAACCTTTT
gi|11 : aGGGGCCGGCAAAAGCA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTT----TACA--AGTAACTAGTCTGTCAGATGAGTAAACCTTTTG
gi|5 : GGGGCCGGCAATAGCA----CT--------C--------GTC--------C---TG--ATGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTT----TGCC--AGTAACTAGTCTGTCATACGAGTAAACCTTTTGG
gi|10 : GGGGCCAGCAAAAGCA----CT--------C--------GTC--------C---TG--ATGATTGGTTTTT-GTCTG-CGAACG---------GGTGA--TTTT----TACC--AGTAACTAGTCAGTCGGATGAGTAAACTTTTTG
gi|8 : GGGGTTAGCAAAAGCA----CT--------C--------GCC--------T---TG--ACCACTGGTTTTT-GTCTG-CAGATG---------AGTGA--CTTT----TACC--AGTAACTAGTCTGTTGGACAAGTAAACTTTTTGG
gi|13 : GGGGCCGGCAAAAGCA----CT--------C--------ATC--------C---TG--AC-AGTGTTTTTTAGTCTG-TGGACA---------AGTGA--TTTT----TACC--AGTTACTAGTCCACCGGACGAGTAAACGTTTTG
gi|1 : GGGGCCAGCAGAAGCA----CTTGTCTGCTC--------GTC--------C---CG--ACGAGTGGTTTTT-GTCTA-CGGACG---------GGTGA--TTTT----TACC--AGTAACTAGTCCATTGGACAAGTTAACTTTTTG
gi|19 : GGGGCCGGCAAAAGCA----CT--------C--------ATC--------C---TG---------GTTTTT-GTATG-CAGACG---------AGTGA--TTTT----TAC---AGTATCTAGTCCGTTGGACGAGTAAA-CTTTTGG
gi|26 : caGGGGCCGGCTAAAGCA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTT----TGCC--AGTA
gi|4 : aGGGGCCGGCAAAGG-A----CT--------C--------GCCCGCTTGTAC---TG--ACGACTGCCTATT-GT--------CA---------AGTGA--TTTG----TACC--AGTAACTTGTACGTCGGACGAGTAAATTTTTTGG
gi|3 : aGGGGCCGCCAAAAGCA----CT--------CTTCTGCTCGTC--------C---TG--ACGAGTGTTTTTT-GGCTT-CGGAAG---------AGTGATTTTTT----TATT--AAGAACTAGTCAGTCCG-CTAGTAAACTTT
gi|20 : aGGGACCGGTAAAAGGA----TT--------C--------GTC--------T----------ACTCATCCT----------GGCG---------AGTGT--TTTT----TGTCTGAGTAACTCGTCCGTTGGACAAGTAAACTTTTTAG
gi|17 : aGGGTTGGCAAAAGCA----CT--------C--------GTC--------C---TA--ATGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTT----TACC--AGTAATTAGTCAGTCGAACGAGTTAACTTTT
gi|22 : GGACCGCCAAAAGCA----CT--------C--------GTC--------C---------GAGCGGTTTTT-GTCTG-CAGACG---------AGTGA--TTTT----TACC--AGTAACTAGTCTGTCGGACGA
gi|2 : GGGCCGGCAAAAGCA----CT--------C--------ATCTGCTCATCC---TG--ATGAGTGATTTTT-GTCGG-TGAACA---------AGTGA--TTTTCACCTGGC--AGTAACTAATCCGTCGGACGAGTAAACTTTactttta
gi|18 : CGGCAAAAGCAAATGTT--------T--------GTC--------C---TG--ACGAGTGTTTTTT-GCTGG-CAGACA---------AGTGA--TTTT----TACT--AGTAACTAGTCTGTCGGTCGAGTAAAC
gi|25 : aaGCAAAAGCA----CT--------C--------TTC--------CGCATGTCCCGAGTGGTTTTT-GCTGG-CAGACA---------AGTGA--TTTT----TACC--AG-AATTAt
gi|24 : ctaCAGAAGCG----CT--------T--------ATC--------A---TG--AC-AGTGTTTTTT-TTCTGGCAGACG---------ACTGA--TTTT----TACC--AATAACTAGTCCGTCGGATGAGTAAACac
gi|21 : ----CT--------C--------GTT--------C---TG--ATGAGTGATTTTT-GT-TG-GGGGGGGGGGGGAAAAGTGA--TTTT----TACC--AGTGACTAGTCTGTTGGACAAGTAAATTTTt
gi|27 : g--------C---TG--AAGAGTGGTTTTT-G-CTG-----------------GTG-----TT----TACA--GGTAACAAGTTGGTCGGACAAGTAA
gi|28 : G-CGAACG---------AGTGA--TTTT----TACC--AGTAACTAGTCCGTCAGACAAGTAAACCTTTTGGtgtttg
gi|23 : G---------AGTGA--TTTT----TACC--ATTAACTAGTCAGTTAGACATGTAAACTTTTT
gi|29 : acatacagattacaggggcaggcaactcgtcttGA--TTTT----TACC--AGTTACTAGTCCATCCGACGAGTAAACATTtggcca
Alignments
lowQualScore : 11111111
lowQualScore : 66666666 3333 55555555 55555555 11111111 222 22 2 1 1 555555555 11 2222
lowQualScore : ........ .... ........ ........ ........ ... .. . . . ......... .. ....
lowQualScore : 00000000 4444 88888888 88888888 22222222 777 11 2 5 5 777777777 99 9999
consensus : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
Reference ( family-631 ) : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
gi|1 : GGGGCCAGCAGAAG--------CA----CTTGTCTGCTC--------GTC--------C---CG--ACGAGTGGTTTTT-GTCTA-CGGACG---------GGTGA--TTTTTAC----CAGTAACTAGTCCATTGGACAAGTTAACTTTTTG
gi|10 : GGGGCCAGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ATGATTGGTTTTT-GTCTG-CGAACG---------GGTGA--TTTTTAC----CAGTAACTAGTCAGTCGGATGAGTAAACTTTTTG
gi|11 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----AAGTAACTAGTCTGTCAGATGAGTAAACCTTTTG
gi|12 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTG
gi|13 : GGGGCCGGCAAAAG--------CA----CT--------C--------ATC--------C---TG--AC-AGTGTTTTTTAGTCTG-TGGACA---------AGTGA--TTTTTAC----CAGTTACTAGTCCACCGGACGAGTAAACGTTTTG
gi|14 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-GGGACA---------AGTGA--TTTTTAC----CAGTAACTAGTCTGTCGGACGAGTAAACCTTTT
gi|15 : aGGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCATCGGACGAGTAAACCTTTT
gi|16 : aGGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTG
gi|17 : GGGTTGGCAAAAG--------CA----CT--------C--------GTC--------C---TA--ATGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----CAGTAATTAGTCAGTCGAACGAGTTAACTTTT
gi|18 : CGGCAAAAG--------CAAATGTT--------T--------GTC--------C---TG--ACGAGTGTTTTTT-GCTGG-CAGACA---------AGTGA--TTTTTAC----TAGTAACTAGTCTGTCGGTCGAGTAAAC
gi|19 : aaGGGGCCGGCAAAAG--------CA----CT--------C--------ATC--------C---TG---------GTTTTT-GTATG-CAGACG---------AGTGA--TTTTTA-----CAGTATCTAGTCCGTTGGACGAGTAAA-CTTTTGGt
gi|2 : caGGGCCGGCAAAAG--------CA----CT--------C--------ATCTGCTCATCC---TG--ATGAGTGATTTTT-GTCGG-TGAACA---------AGTGA--TTTTCACCTGGCAGTAACTAATCCGTCGGACGAGTAAACTTT
gi|20 : GGGACCGGTAAAAGGATTCGTCTA----CT--------C--------ATC--------C---TG--GCGAGTGTTTTTT-GTCTG-----------------------------------AGTAACTCGTCCGTTGGACAAGTAAACTTTTTAG
gi|21 : a----CT--------C--------GTT--------C---TG--ATGAGTGATTTTT-GT-TG-GGGGGGGGGGGGAAAAGTGA--TTTTTAC----CAGTGACTAGTCTGTTGGACAAGTAAATTTT
gi|22 : gGGACCGCCAAAAG--------CA----CT--------C--------GTC--------C---------GAGCGGTTTTT-GTCTG-CAGACG---------AGTGA--TTTTTAC----CAGTAACTAGTCTGTCGGACGA
gi|23 : G---------AGTGA--TTTTTAC----CATTAACTAGTCAGTTAGACATGTAAACTTTTTactttta
gi|24 : acatacagattacaggggcaggcaactcgtcttCAGAAG--------CG----CT--------T--------ATC--------A---TG--AC-AGTGTTTTTT-TTCTGGCAGACG---------ACTGA--TTTTTAC----CAATAACTAGTCCGTCGGATGAGTAAACtggcca
gi|25 : GCAAAAG--------CA----CT--------C--------TTC--------CGCATGTCCCGAGTGGTTTTT-GCTGG-CAGACA---------AGTGA--TTTTTAC----CAG-AATTAt
gi|26 : ctaGGGGCCGGCTAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAac
gi|27 : a--------C---TG--AAGAGTGGTTTTT-G-CTG-----------------GTG-----TTTAC----AGGTAACAAGTTGGTCGGACAAGTAA
gi|28 : G-CGAACG---------AGTGA--TTTTTAC----CAGTAACTAGTCCGTCAGACAAGTAAACCTTTTGGtgtttg
gi|29 : GA--TTTTTAC----CAGTTACTAGTCCATCCGACGAGTAAACATT
gi|3 : GGGGCCGCCAAAAG--------CA----CT--------CTTCTGCTCGTC--------C---TG--ACGAGTGTTTTTT-GGCTT-CGGAAG---------AGTGATTTTTTTAT----TAAGAACTAGTCAGTCCG-CTAGTAAACTTT
gi|4 : aGGGGCCGGCAAAGG---------A----CT--------C--------GCCCGCTTGTAC---TG--ACGACTGCCTATT-GT--------CA---------AGTGA--TTTGTAC----CAGTAACTTGTACGTCGGACGAGTAAATTTTTTGG
gi|5 : aGGGGCCGGCAATAG--------CA----CT--------C--------GTC--------C---TG--ATGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCTGTCATACGAGTAAACCTTTTGG
gi|6 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
gi|7 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CAGACG---------AGTAA--TTTTTGC----CAGTAACTAGTCCGTCGGATGAGTTAACCTTTTGG
gi|8 : GGGGTTAGCAAAAG--------CA----CT--------C--------GCC--------T---TG--ACCACTGGTTTTT-GTCTG-CAGATG---------AGTGA--CTTTTAC----CAGTAACTAGTCTGTTGGACAAGTAAACTTTTTGG
gi|9 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TA--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--ATTTTGC----CAGTAACTAGTCCGTCGGACAAGTAAACCTTTTG
Alignments
lowQualScore : 11111111
lowQualScore : 66666666 3333 55555555 55555555 11111111 222 22 2 1 1 555555555 11 2222
lowQualScore : ........ .... ........ ........ ........ ... .. . . . ......... .. ....
lowQualScore : 00000000 4444 88888888 88888888 22222222 777 11 2 5 5 777777777 99 9999
consensus : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
Reference ( family-631 ) : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
gi|1 : GGGGCCAGCAGAAG--------CA----CTTGTCTGCTC--------GTC--------C---CG--ACGAGTGGTTTTT-GTCTA-CGGACG---------GGTGA--TTTTTAC----CAGTAACTAGTCCATTGGACAAGTTAACTTTTTG
gi|10 : GGGGCCAGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ATGATTGGTTTTT-GTCTG-CGAACG---------GGTGA--TTTTTAC----CAGTAACTAGTCAGTCGGATGAGTAAACTTTTTG
gi|11 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----AAGTAACTAGTCTGTCAGATGAGTAAACCTTTTG
gi|12 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTG
gi|13 : GGGGCCGGCAAAAG--------CA----CT--------C--------ATC--------C---TG--AC-AGTGTTTTTTAGTCTG-TGGACA---------AGTGA--TTTTTAC----CAGTTACTAGTCCACCGGACGAGTAAACGTTTTG
gi|14 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-GGGACA---------AGTGA--TTTTTAC----CAGTAACTAGTCTGTCGGACGAGTAAACCTTTT
gi|15 : aGGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCATCGGACGAGTAAACCTTTT
gi|16 : aGGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTG
gi|17 : GGGTTGGCAAAAG--------CA----CT--------C--------GTC--------C---TA--ATGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----CAGTAATTAGTCAGTCGAACGAGTTAACTTTT
gi|18 : CGGCAAAAG--------CAAATGTT--------T--------GTC--------C---TG--ACGAGTGTTTTTT-GCTGG-CAGACA---------AGTGA--TTTTTAC----TAGTAACTAGTCTGTCGGTCGAGTAAAC
gi|19 : aaGGGGCCGGCAAAAG--------CA----CT--------C--------ATC--------C---TG---------GTTTTT-GTATG-CAGACG---------AGTGA--TTTTTA-----CAGTATCTAGTCCGTTGGACGAGTAAA-CTTTTGGt
gi|2 : caGGGCCGGCAAAAG--------CA----CT--------C--------ATCTGCTCATCC---TG--ATGAGTGATTTTT-GTCGG-TGAACA---------AGTGA--TTTTCACCTGGCAGTAACTAATCCGTCGGACGAGTAAACTTT
gi|20 : GGGACCGGTAAAAGGATTCGTCTA----CT--------C--------ATC--------C---TG--GCGAGTGTTTTTT-GTCTG-----------------------------------AGTAACTCGTCCGTTGGACAAGTAAACTTTTTAG
gi|21 : a----CT--------C--------GTT--------C---TG--ATGAGTGATTTTT-GT-TG-GGGGGGGGGGGGAAAAGTGA--TTTTTAC----CAGTGACTAGTCTGTTGGACAAGTAAATTTT
gi|22 : gGGACCGCCAAAAG--------CA----CT--------C--------GTC--------C---------GAGCGGTTTTT-GTCTG-CAGACG---------AGTGA--TTTTTAC----CAGTAACTAGTCTGTCGGACGA
gi|23 : G---------AGTGA--TTTTTAC----CATTAACTAGTCAGTTAGACATGTAAACTTTTTactttta
gi|24 : acatacagattacaggggcaggcaactcgtcttCAGAAG--------CG----CT--------T--------ATC--------A---TG--AC-AGTGTTTTTT-TTCTGGCAGACG---------ACTGA--TTTTTAC----CAATAACTAGTCCGTCGGATGAGTAAACtggcca
gi|25 : GCAAAAG--------CA----CT--------C--------TTC--------CGCATGTCCCGAGTGGTTTTT-GCTGG-CAGACA---------AGTGA--TTTTTAC----CAG-AATTAt
gi|26 : ctaGGGGCCGGCTAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAac
gi|27 : a--------C---TG--AAGAGTGGTTTTT-G-CTG-----------------GTG-----TTTAC----AGGTAACAAGTTGGTCGGACAAGTAA
gi|28 : G-CGAACG---------AGTGA--TTTTTAC----CAGTAACTAGTCCGTCAGACAAGTAAACCTTTTGGtgtttg
gi|29 : GA--TTTTTAC----CAGTTACTAGTCCATCCGACGAGTAAACATT
gi|3 : GGGGCCGCCAAAAG--------CA----CT--------CTTCTGCTCGTC--------C---TG--ACGAGTGTTTTTT-GGCTT-CGGAAG---------AGTGATTTTTTTAT----TAAGAACTAGTCAGTCCG-CTAGTAAACTTT
gi|4 : aGGGGCCGGCAAAGG---------A----CT--------C--------GCCCGCTTGTAC---TG--ACGACTGCCTATT-GT--------CA---------AGTGA--TTTGTAC----CAGTAACTTGTACGTCGGACGAGTAAATTTTTTGG
gi|5 : aGGGGCCGGCAATAG--------CA----CT--------C--------GTC--------C---TG--ATGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCTGTCATACGAGTAAACCTTTTGG
gi|6 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
gi|7 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CAGACG---------AGTAA--TTTTTGC----CAGTAACTAGTCCGTCGGATGAGTTAACCTTTTGG
gi|8 : GGGGTTAGCAAAAG--------CA----CT--------C--------GCC--------T---TG--ACCACTGGTTTTT-GTCTG-CAGATG---------AGTGA--CTTTTAC----CAGTAACTAGTCTGTTGGACAAGTAAACTTTTTGG
gi|9 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TA--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--ATTTTGC----CAGTAACTAGTCCGTCGGACAAGTAAACCTTTTG
blockSeqs : GATTCGTC AATG . TTCTGCTC TGCTCATC GCA TC T A G GGGGGGAAA TT CTGG
blockSeqs : . . . . CGCTTGTA . . C . . . . .
blockSeqs : . . . . . . . C . . . . .
blockSeqs : . . . . . . . G . . . . .
blockSeqs : . . . . . . . C . . . . .
blockSeqs : . . . . . . . C . . . . .
blockSeqs : . . . . . . . C . . . . .
blockSeqs : . . . . . . . C . . . . .
blockSeqs : . . . . . . . G . . . . .
blockSeqs : . . . . . . . G . . . . .
blockSeqs : . . . . . . . G . . . . .
blockSeqs : . . . . . . . G . . . . .
blockSeqs : . . . . . . . G . . . . .
blockSeqs : . . . . . . . G . . . . .
blockSeqs : . . . . . . . G . . . . .
blockSeqs : . . . . . . . C . . . . .
blockSeqs : . . . . . . . G . . . . .
blockSeqs : . . . . . . . G . . . . .
blockSeqs : . . . . . . . C . . . . .
blockSeqs : . . . . . . . C . . . . .
blockSeqs : . . . . . . . C . . . . .
blockSeqs : . . . . . . . C . . . . .
blockSeqs : . . . . . . . C . . . . .
blockSeqs : . . . . . . C . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : ********
originalCons : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
finalCons : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
Alignments
lowQualScore : 11111111
lowQualScore : 66666666 3333 55555555 55555555 11111111 222 22 2 1 1 555555555 11 2222
lowQualScore : ........ .... ........ ........ ........ ... .. . . . ......... .. ....
lowQualScore : 00000000 4444 88888888 88888888 22222222 777 11 2 5 5 777777777 99 9999
consensus : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
Reference ( family-631 ) : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
gi|1 : GGGGCCAGCAGAAG--------CA----CTTGTCTGCTC--------GTC--------C---CG--ACGAGTGGTTTTT-GTCTA-CGGACG---------GGTGA--TTTTTAC----CAGTAACTAGTCCATTGGACAAGTTAACTTTTTG
gi|10 : GGGGCCAGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ATGATTGGTTTTT-GTCTG-CGAACG---------GGTGA--TTTTTAC----CAGTAACTAGTCAGTCGGATGAGTAAACTTTTTG
gi|11 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----AAGTAACTAGTCTGTCAGATGAGTAAACCTTTTG
gi|12 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTG
gi|13 : GGGGCCGGCAAAAG--------CA----CT--------C--------ATC--------C---TG--AC-AGTGTTTTTTAGTCTG-TGGACA---------AGTGA--TTTTTAC----CAGTTACTAGTCCACCGGACGAGTAAACGTTTTG
gi|14 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-GGGACA---------AGTGA--TTTTTAC----CAGTAACTAGTCTGTCGGACGAGTAAACCTTTT
gi|15 : aGGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCATCGGACGAGTAAACCTTTT
gi|16 : aGGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTG
gi|17 : GGGTTGGCAAAAG--------CA----CT--------C--------GTC--------C---TA--ATGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTAC----CAGTAATTAGTCAGTCGAACGAGTTAACTTTT
gi|18 : CGGCAAAAG--------CAAATGTT--------T--------GTC--------C---TG--ACGAGTGTTTTTT-GCTGG-CAGACA---------AGTGA--TTTTTAC----TAGTAACTAGTCTGTCGGTCGAGTAAAC
gi|19 : aaGGGGCCGGCAAAAG--------CA----CT--------C--------ATC--------C---TG---------GTTTTT-GTATG-CAGACG---------AGTGA--TTTTTA-----CAGTATCTAGTCCGTTGGACGAGTAAA-CTTTTGGt
gi|2 : caGGGCCGGCAAAAG--------CA----CT--------C--------ATCTGCTCATCC---TG--ATGAGTGATTTTT-GTCGG-TGAACA---------AGTGA--TTTTCACCTGGCAGTAACTAATCCGTCGGACGAGTAAACTTT
gi|20 : GGGACCGGTAAAAGGATTCGTCTA----CT--------C--------ATC--------C---TG--GCGAGTGTTTTTT-GTCTG-----------------------------------AGTAACTCGTCCGTTGGACAAGTAAACTTTTTAG
gi|21 : a----CT--------C--------GTT--------C---TG--ATGAGTGATTTTT-GT-TG-GGGGGGGGGGGGAAAAGTGA--TTTTTAC----CAGTGACTAGTCTGTTGGACAAGTAAATTTT
gi|22 : gGGACCGCCAAAAG--------CA----CT--------C--------GTC--------C---------GAGCGGTTTTT-GTCTG-CAGACG---------AGTGA--TTTTTAC----CAGTAACTAGTCTGTCGGACGA
gi|23 : G---------AGTGA--TTTTTAC----CATTAACTAGTCAGTTAGACATGTAAACTTTTTactttta
gi|24 : acatacagattacaggggcaggcaactcgtcttCAGAAG--------CG----CT--------T--------ATC--------A---TG--AC-AGTGTTTTTT-TTCTGGCAGACG---------ACTGA--TTTTTAC----CAATAACTAGTCCGTCGGATGAGTAAACtggcca
gi|25 : GCAAAAG--------CA----CT--------C--------TTC--------CGCATGTCCCGAGTGGTTTTT-GCTGG-CAGACA---------AGTGA--TTTTTAC----CAG-AATTAt
gi|26 : ctaGGGGCCGGCTAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAac
gi|27 : a--------C---TG--AAGAGTGGTTTTT-G-CTG-----------------GTG-----TTTAC----AGGTAACAAGTTGGTCGGACAAGTAA
gi|28 : G-CGAACG---------AGTGA--TTTTTAC----CAGTAACTAGTCCGTCAGACAAGTAAACCTTTTGGtgtttg
gi|29 : GA--TTTTTAC----CAGTTACTAGTCCATCCGACGAGTAAACATT
gi|3 : GGGGCCGCCAAAAG--------CA----CT--------CTTCTGCTCGTC--------C---TG--ACGAGTGTTTTTT-GGCTT-CGGAAG---------AGTGATTTTTTTAT----TAAGAACTAGTCAGTCCG-CTAGTAAACTTT
gi|4 : aGGGGCCGGCAAAGG---------A----CT--------C--------GCCCGCTTGTAC---TG--ACGACTGCCTATT-GT--------CA---------AGTGA--TTTGTAC----CAGTAACTTGTACGTCGGACGAGTAAATTTTTTGG
gi|5 : aGGGGCCGGCAATAG--------CA----CT--------C--------GTC--------C---TG--ATGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCTGTCATACGAGTAAACCTTTTGG
gi|6 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--TTTTTGC----CAGTAACTAGTCCGTCGGACGAGTAAACCTTTTGG
gi|7 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TG--ACGACTGGTTTTT-GTCTG-CAGACG---------AGTAA--TTTTTGC----CAGTAACTAGTCCGTCGGATGAGTTAACCTTTTGG
gi|8 : GGGGTTAGCAAAAG--------CA----CT--------C--------GCC--------T---TG--ACCACTGGTTTTT-GTCTG-CAGATG---------AGTGA--CTTTTAC----CAGTAACTAGTCTGTTGGACAAGTAAACTTTTTGG
gi|9 : GGGGCCGGCAAAAG--------CA----CT--------C--------GTC--------C---TA--ACGACTGGTTTTT-GTCTG-CGGACG---------AGTGA--ATTTTGC----CAGTAACTAGTCCGTCGGACAAGTAAACCTTTTG