lowQualScore : 22222222222222222222222222222222222222222
lowQualScore : 1 1 22 77777777777777777777777777777777777777777 3333 111111111111 11111 1 1 111 111111 2222222222 1 22 11 4444444444444444444444444444444444 1111 1111111 33333333333 2222222 222222222222222 111111111 1111111 1111111 1
lowQualScore : 0 6 7 99 11 1 5 0 1 5 5 888888 77777777777777777777777777777777777777777 1 0000 0 66 55 55 99 2 222 555555555555 1 2 0 77777 1 2 2 22 2 0 1 44 2 333 666 000 33 333 333 222222 333 1 4 3 5 7777777777 8 3 22 2 2 33 2 2 44 555 555 5555555555555555555555555555555555 5555 2 444 5 33 7777 4 444 3333333 2 2 888 88888888888 2 9999999 2 2 1 1 1 1 333 111111111111111 3333 22 1 22 555 6 22 5 22 44 1 777777777 22 22 22 8 1 3 33 1 0000000 1 1 77 1 222 1 1 2222222 4 1 55 1 4 777777 22 444444 1 22 2 2
lowQualScore : . . . .. .. . . . . . . ...... ......................................... . .... . .. .. .. .. . ... ............ . . . ..... . . . .. . . . .. . ... ... ... .. ... ... ...... ... . . . . .......... . . .. . . .. . . .. ... ... .................................. .... . ... . .. .... . ... ....... . . ... ........... . ....... . . . . . . ... ............... .... .. . .. ... . .. . .. .. . ......... .. .. .. . . . .. . ....... . . .. . ... . . ....... . . .. . . ...... .. ...... . .. . .
lowQualScore : 0 7 0 22 11 4 7 1 7 7 7 444444 00000000000000000000000000000000000000000 1 0000 1 11 55 55 55 7 999 444444444444 1 4 2 66666 1 1 1 99 0 7 9 55 0 555 999 000 11 999 999 555555 999 3 3 6 1 9999999999 8 7 77 9 9 99 9 9 22 666 000 4444444444444444444444444444444444 7777 7 777 3 77 9999 7 777 3333333 1 4 888 77777777777 1 7777777 1 1 9 9 8 7 222 999999999999999 9999 55 7 44 999 5 44 6 44 77 6 333333333 22 22 22 8 6 2 88 3 9999999 5 5 44 5 666 5 5 5555555 6 5 22 5 7 777777 33 888888 8 88 2 3
consensus : TGTATACATGTATGTG-AAAACC-TATATGGT--GCATTCTATTTT-TTGCGTT-TCATGTTTT-TGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTAAAAATATATATATATATTT----------------TT-TTTTACAGAAGATCTAAGGCATGATTCTTTCAA--GC--A--TT--TTTGCTTTCATAAA-ATA-C-C-CAGAGTTAAN-ATAGA-ATAAATAT-----TTACATCTACAAAAATG-AATT-C--ACTTTTGTAGA-GACAATT-TTC--ATTTT---TATGC---T---TT--TT---GATGTA---TT------A---TGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAAGAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TT--ATTTTCCT---TT-------TTTCTTT-TAATT-T-TCTAA------GACA-GAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-A----T--AGCACCATATG-G--TAAA--ATCCAATG--TTATNCA--CTATTCAAATAATATAATTAAAATAA-GATAT-T-----N---T--CT--G--TAGAAAANA-AT-CTG--TTATTTATA------T-ATGTAAATGCTATAC-ATGTTGT-NAATT-GAA---AT-TG-TA-----TTAG-CA-TATTGT--A-ATATTTCATGT------ATT--GGA------GAAT-GAA--AAT-AAAAAAATAC
Reference ( gi|2 ) : TGTATACATGTATGTG-AAAACC-TATTTGGT--GCAT-CTATTTT-TTGTGTT-TCATGTTTT-TACAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTAAAAATATATATATATATTTATTTTTTTCTATTATTTTTTTTTACAGAAGATCTTAGGCATGATTCTTTCAA--AC--A--TT--TTTGCTTTCATAAA-ATA-C-C-CAGAGTTGAA-ATAGA-ATAAATAT-----TTACATCTACAAAAATG-AATT-C--ACTTTTGTAGA-GACAATT-TTC--ATTTT---TATGC---T---TT--TT---GATGTA---TT------A---TGAAGGCTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAATGGGTCAAGAATAT-TT-TTTAG--AT-TTT-GAAATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCCT---TT-------TTTCTTT-TAATT-T-TCTAA------AACACGAAAAAAA-A-A----GCA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-A----T--AGCACCATATG-G--TAAA--ATCCGATG--TTATTCA--CTATTCAAATAATATAATTAAAATAA-GATAT-T-----T---T--CT--G--TAGAAAATA-AT-CTG--TTATTTATA------T-ATGTAAATACTATAC-ATGTTGT-TAATT-GAA---AT-TG-TA-----CTAG-CA-TATTGT--A-ATATCTCATGT------ATT--GGA------GAAT-GAA--AAT-AACAAAATAC
gi|6 : TGTATACATGTATGTG-AAAACC-TATATGGT--GCATTCTATTTT-TTGTGTT-TCATGTTTT-TACAACATCTATTTTTT-ATTAATTTCATAGGCAGTAAATT-----TA-ATATATATATTT--------------------TGTACAGAAGATCTAAGACATGATTCTTTCAA--AC--A--TT--TTTGCTTTCATAAA-ATA-C-C-CAGAGTTGAC-ATAGA-ATAAATAT-----TTACATCTACAAAAATT-AATT-C--ACTTTTGTAGA-GACAATT-TTC-----------ATGC---T---TT--TT---GATGCA---TTATGAAGA---TGAAGGTTTCCTATTGCATTAAATTTGATAATTCCA----------TTGTTAAATGTATCTAGCAACATAATCAGGAGACGAATTATAAACAAAAAGGTTCAAGAATAT-GT-TTTAG--AT-TTC-GATAATCTT-A-ACTGTATGT---TG-T---TGG--------T----T-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCCT---TT-------TTTCTTT-GAACT-T-TTTAA------AACACGAATATAA-A-A-----CA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-A----T--AGCACCATATG-G--TAAA--ATCCAATG--TTATTCA--CTATTCAAATACTACGATTAAGATGA-GATAT-T-----T---T--CT--G--TAGAAAATA-AT-CTG--TTATTTGTA------T-ATGTAAATACTATAC-ATGCTGT-TAATT-GAA---AT-TG-TA-----CTAA-CA-TATTGT--A-ATATATCA
gi|5 : aTGTATACATGTATGTG-AAAACC-TATATGGT--GCAT-TT--TTT-TTGCGTT-ACATGTTTT-TACAACATCGATTTTTTTATTAATTTCATAGGAAGTAAATTAAATATATATATATATATTTATTT---------ATTTT-TTTTACAGAAGATCTAAGGCATGATATTTTAAA--AC--A--TT--TTTGCTTTCATAAA-ATA-C-C-CAGAGTTGAC-ATAAA-ATAAATAT-----TTACATCTTCAAAAAGG-AATT-C--ACTTTCGTATA-GACAATT-TTC--ATTTT---TATGC---T---TT--TT---GATGTA---TT------A---TGAAGGTTTCCTATTGCATTAGATTTGATAATTCCG----------TTGTTAAATGTAAACAGAAACATAACCAGAAGACGAATTATAAACGAAAAGGGTCAAGAATTT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTTG--TTTGTTTGTTGT----T-T----T----TTTT----GC-TG---T-TGT--TC--ATTTTCCT---TT-------TTTCTTT-TAACT-T-TCTAA------AACACGAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-A----T--AGCACCATATG-G--TAA--------------TAT------------AAT--------TGAAATAA-GATAT-T-----T---T--CT--G--TAGACAATA-AT-CTG--TTATTTATA------T-A--TAAATACTATAC-ATGTTGT-TAACT-GAA---AT-TG-TA-----TTAG-CA-TATTGC--A-ATATCTCATGT------ATT--GGA------GAATAAAA--AAA-AACAAA
gi|1 : aTGTATACATGTATGTG-AAAAAC-TATATGGT--GCATTCTATTTT-T-GCGTT-TCATGTTTT-TGCAACATCGATCTTTT-----------T-GGCAATAAATTATAAAT------ATATGTT---------------------TTTACAGAAGATCTAA--CATGATTCTTTCAA--GC--A--TT--TTTGCTTTCATGAA-ATA-C-T-CAGTGTTAAC-ATAAA-ATAAATAT-----TTACATCTACAAAAATATAATT-C--ACTTTGGTAGA-AACAATT-TTC--ATTTT---TATTA---T---TT--TT---TATGTT---TT------A---TGAAAGTTTCCCAGTGAATTA-ATTTGATAATTCCG----------TTGTTAATTGTACACATCATCATAATCAGAAGACGAATTATAAA-ACAAT-CGTCAAGAATTA-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTGTATGC---T-TT---TTG--------T----G-T----T----TTTT----GT-TT---T-TGT--TT--AACTTTCT---T------------------ATT-A-TTTAA------GA---GAAAAAAA----------A-C-ACTCAAAATATTGATTTGC-TGCCTCC-AAA-ATAG--------------------------A----T--AGCACCATATG-G--CTGA--ATCCAATG--TTATTCA--CTATTTAAATGATATAATTGAAATTA-GATAT-T-----A---T--CT--G--TAGAAAATA-AT-CTG--TTATTTATA------T-ATGTAAATACTATAC-ATGTTAT-TAACT-GAA---AT-TG-TA-----TTAG-CC-TATTGT--A-ATATTTCATGT------ATT--GGA------GAAT-GAcaaaaa
gi|7 : aggatgatatatatcttttatgattaacaaaggatataaagaagaatttgtgcaaaaaatttcttgaatcattcaatattcagatatatatatgtgtgtgtgtgtgtatgtatatatatatgtgtgTGTATTTGTAAAATCATGTATAGCCAGTAT-TTATTTTATTTTTTTGTCGTTTTTTGTGCAACAACGAGTTTTC-A---ACTTTATAGGCAGTGAAT------------------TCTATTTT----TAT-----------ACATAAGATCCAA--CATTGTTCTTTCCA--GA--A--TTG-TTTGCTTTCATGAG-ATA-CTC-C--AATTAAATATAGA-ATACCTAC-----TTAAATCT--GAAAATC-ACTC-CCAACTATTTTAGA-AATGATT-TTT--AATTT---AATGC---T---TT--TT---GATGAG---TT------A---AGCACGTTTATTAGTA-ATAACATATGATAATTTCAAATGTTAAAGTTGTAAAGTGTAAATAGCAATTTGACCGGAAGATTAAAGATAAAAGAAA
gi|3 : tatgtatagttaaatgAAACC-TATATGGT--GCAT-----TTT-TTGCGTT-TCATGTTTT-TACAACATCCACCTTTT-ATTAATTTCAAAGGCAGTGAATCAAAAATATATATA-------------------------TTTTTACAGAAGATCTGAGGCATGATTCTTTCAA--GC--A--TT--T--GCTTTCATAAA-ATA-C-C-CAGAGTTAAC-ATAGA-ATAAATAT-----TTACATCCACAAAAATG-AATT-C--ACTTTTGTAGA-GACAATT-TCC--ATacaacatgaaaggttttttactcttattgtgtcattaaagtgaaaatatcacataaaccttgatttgctgccttctaaagttataacaccatatgtgcctattcaagttattatttaaataatatacttaaaatgtgttatcatcgttagaaaaaatatgttacctgtgtaaatgctacacatgttgtaaattggatatattatagcaaccgagaagtgttgtgagatatatcatattacattacagaaattatgaatgaaccgacaaaaaaatat
gi|4 : CC-TATATGGT--GCATTCTATTTT-TCGCGTT-TCATGTTTA-TGCAACATCGATTTTTT-ATTTATTTCACAGGCAGTAAATCAAAAATA-------------------------TATTTTATTTTACAGAAGATCTAAGGCATGATTCTTTCAA--GC--A--TT--TTTGCTTTCATCAA-ATA-C-C-CAGAGTTAAC-ACAGA-ATAAAAAT-----TTACATCTACAAAAATG-AATT-C--ACTTTTGTAGA-GACAATT-TTC--ATGTT---TATGC---T---TT--AT---GGTGTA---TT------A---TGAAGGTTTCCTAGTGAATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACGGCAACATAATCAGAAGACGAATTATAAA-AAAA-GGGTCAAGAATAT-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTTTATGT---TGTTGTGTTT--------T----T-TGGGGT----TTTTTTTGGT-TG---T-TGTTGTT--GTTTTTTTCAGTT-------TTTTTTT-TAACT-T-TCTAATTTTTTAAGA-GAAAAAAA-A-A-----C----------AACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-A----T--AGCACCATACG-G--TAAA--ATCCAATG--TTATTCG--CTATTCAAATAATATAATTAAAATAA-GATAG-T-----A---T--CT--G--TAGAAAGTA-AT-CTG--TTATTTATA------T-ATGTAAGTGCTAAAC-ATGTTGT-TAATT-GAA---AT-TG-TA-----TTAG-CC-TATCGT--A-ATATCTCATGT------ACT--GGA------GAAT-GAA--AAT-AAAAAATTACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaaacaaaaggtcaagaatattttttagattttgctactcttaactgtatgctgttgtgttcttgttgttgttttgttgtttttttttattgtttttttgttttttaaatttctaattatttaagagaaaaaatcacacattcaaaacattgattggcttgcctccaaaactgacacttacttaatgacaccatatggtaaaatccaatgttattcactattcaaataatacaattaaaataaggtagtatcggtagaaaataatctgttatttatatatgtaaatactatacatgttgttaattgaaattgtattagcctattgtaatatatcttgtattggagaatgaaaatgaaaaaatacaaaa
gi|15 : T-TTATTTT-TTGCGTT-TCA-GTTTT-TGCAAAATCGATTTAT--ATTTATCTCACAGGCAGTAAA--------GTATGAATATATT---------------------TTTACATAAGATCTAA--CATGATTCTTTCAA--GC--A--TT--TTTGCTTTCATGAA-ATA-C-C-CAGAGAAAAC-ATAGA-ATAAATAT-----TTACACCTACAAAAATT-TATT-C--ACTTTTGTAGA-GACAATT-TTCT-TTTTT---TATTC---T---TT--TT---GATGTA---TT------A---CAAAGGTTTaaaaaa
gi|22 : cagtctactgatctttagaaactatatgttgagtgtctagacactatacgttgagtgtcaatgaggcattgTTTTTGTACATAGGTTCC-AACCTTTATTTTTT--A--AT--AGTTTCGTTTGCTTTCATGAG-GTA-C-T-TATA-TTAAACATAGA-ATACCTAC-----TTAAATATGCAGAA-------------CTTTTGTAGA-GATGAGT-TTT--AATTT---TACGT---T---TT--TT-----TGTAATTCT------A---TT-AGATTTCTAAGTACATTTTATTTTATATTTCCA----------CTGTTAAATa
gi|30 : tcataggcattaaatttcaTTTTTTACATAATATCTAA--CATGATTCTTTTAAGTACGTA--TG--TTTGCTGTCATGAA-ATA-C-T-CAAA-TTAAACATAGA-ATAAATAT-----TTACATCTAC--AAAT----TT-C--CATTGT-TAGA-GACGATT-TTC--
gi|8 : cagtaaatcataaatatag--A--TT--TTTGTCTTGGCAAATATT-T-T-CAG--TTGTA-A-AAA-ATAAATAC-----TTACATCTACAAAAATG-AATT-C--ACTTTTGTAGA-GACAATT-TTC--ATTTT---TATGC---T---GT--TT---GATGTA---TT------A---TGAAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAAAAGCAACATAATCAGAAGACGAATTATAAATAAAAAGGGTCAAGAATAG-TT-TTTAA--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTT---GTT--------T----G-T----T------------GT-TG---T-TGT--TT---TTTTGCT---TTGTTCATTTTTCTTT-TAACT-T-TCTAA------AACCGGAAAAAAA-A-C----ACA-C-ACTCAGAACATTGATTTAC-TGCCCCC-AAA-ATTGACACT---AAC---------T--TA-A----T--AGCACCATATG-G--TAAA--ATTCAATG--CTATCCA--CTATTCAGATAATATAATTAAAATAA-GATAT-T-----T---T--CT--G--TAGAAAACA-AT-CTG--CTATTTATA------T-ATATAAATACTATAC-ATGTTGT-TAATT-GAA---AT-TG-TA-----TTAG-CA-TATTGT--A-ATATCTCATGT------ATC--GGA------TAAT-GAA--AAT-AAAAAAGTAC
gi|4 : CCTTCATAAT-ACA-C-CATAAAGC-----ATAAACATGAAAAT-----TGTC-TCTACAAAAGTG-AATT-C--ATTTTTGTAGATGTAAATT-TTT--A-TTC---TGTGT---TAA-CT--CT---GG-GTA---TTTG----A---TGAAAGCaaaaaa
gi|9 : cctatatggtgcattctatttttcgcgtttcatgtttatgcaacatcgattttttatttatttcacaggcagtaaatcaaaaatatattttattttacagaagatctaaggcatgattctttcaagcatttttCCTTCATAAT-ACA-T-C---------AA-AAAGC-ATAAAAATGAAAATTGTCTCTACAAAAATG-AATT-C--ATTTTTTTAGATGTAAATA-TTT--A-TTT---TATGtttcctagtgaattagatttgataattccattgttaaatgtaaacggcaacataatcagaagacgaattataaaaaaagggtcaagaatattttttagattttgctattcttaactttatgttgttgtgttttttggggttttttttggttgttgttgttgtttttttcagttttttttttaactttctaattttttaagagaaaaaaaaacaacattgatttactgcctccaaaattgatactaacttaatagcaccatacggtaaaatccaatgttattcgctattcaaataatataattaaaataagatagtatctgtagaaagtaatctgttatttatatatgtaagtgctaaacatgttgttaattgaaattgtattagcctatcgtaatatctcatgtactggagaatgaaaataaaaaattacaaaaaa
gi|8 : gagttgaCCTTCATAAT-ACA-T-C---------AA-ACAGC-ATAAAAATGAAAATTGTCTCTACAAAAGTG-AATT-C--ATTTTTGTAGA-TGTAAGTATTT--ATTTT---Ttttcctattacattagatttgataattccattgttaaatgtaaacagcaacataattagaagacgaattataaacaaaaagggtcaagaatattttttagattttagaattattgactgtatgttggtgttttttttgttttttttgctgttgttcattttccttttttcttttaactttctaaaacacgaaaaaaaacacactcaaaacattgatttactgcctccaaaattgacaattacttaatagcaccatatggtaaaatccaatgttatccactattcaaataatataatcaaaataagatattttctgaagaaaatagtctgttatttatatatataaatactatacatattgttaattgaaattgtattagcatattgtaatatatcatgttttggagaatgaaaataaaaaaaatacaaaaaa
gi|1 : atttttgtcttggcaaatattttcagttgtaCTTTCATAAA-ACA-----------TAAA-AAATA-ATAAAAATGAAAATTGTTTCTACCAAAGTG-AATTAT--ATTTTTGTAGATGTAAATA-TTT--A-TTT---TATGT---TAA-CA--CT---GA-GTA---TTTC----A---TGAAAGCtttcctattgcattagatttgataattccattgttaaatgtaaaaagcaacataatcagaagacgaattataaataaaaagggtcaagaatagtttttaaattttgatattcttgactgtatgttgttgtttgttgttgttgtttttttgctttgttcatttttcttttaactttctaaaaccggaaaaaaaacacacactcagaacattgatttactgcccccaaaattgacactaacttaatagcaccatatggtaaaattcaatgctatccactattcagataatataattaaaataagatattttctgtagaaaacaatctgctatttatatatataaatactatacatgttgttaattgaaattgtattagcatattgtaatatctcatgtatcggataatgaaaataaaaaagtacaaaaaa
gi|19 : aggatgatatatatcttttatgattaacaaaggatataaagaagaatttgtgcaaaaaatttcttgaatcattcaatattcagatatatatatgtgtgtgtgtgtgtatgtatatatatatgtgtgtgtatacatgtatgtgaaaaactatatggtgcattctatttttgcgtttcatgtttttgcaacatcgatctttttggcaataaattataaatatatgtttttacagaagatctaacatgattctttcaagcatttttTTTGATTAA-ATAAT-T-CAAA-TTGA---CAGC-ATGTATA--------ACATCTACACAAGAA-AAT-----ACTTTTCTACA-GATAACT-TTCGTATTTTAAGTATACAA-T---TTCATT---GATGTA---TT------ACATTGAAtttcccagtgaattaatttgataattccgttgttaattgtacacatcatcataatcagaagacgaattataaaacaatcgtcaagaattatttttagattttgctattcttaactgtatgctttttgtgttttttgtttttgtttaactttcttattatttaagagaaaaaaaacactcaaaatattgatttgctgcctccaaaatagatagcaccatatggctgaatccaatgttattcactatttaaatgatataattgaaattagatattatctgtagaaaataatctgttatttatatatgtaaatactatacatgttattaactgaaattgtattagcctattgtaatatttcatgtattggagaatga
gi|9 : ttttttaattattataagaaataaaattacttaaacattgattagttgtttaaaatttatactaacaacatatacttgtatcaccatatgtgaataGAGTTGAC-ATAAA-ATAAATAT-----TTACATCTAAAAAAATG-AATT-C--ATTTTTGTAGA-GACAATT-TTC--ATTTT---TATGC---T---TT--TT---GATGTA---TT------A---TGAAGGTTTCCTATTACATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATTAGAAGACGAATTATAAACAAAAAGGGTCAAGAATAT-TT-TTTAG--AT-TTT-AGAATTATT-G-ACTGTATGTTGGTGTT---TTTTTTG----T----T-T----T----TTTT----GC-TG---T-TGT--TC--ATTTTCCT---TT-------TTTCTTT-TAACT-T-TCTAA------AACACGAAAAAAA-A-------CA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGACAAT---TAC---------T--TA-A----T--AGCACCATATG-G--TAAA--ATCCAATG--TTATCCA--CTATTCAAATAATATAATCAAAATAA-GATAT-T-----T---T--CT--G--AAGAAAATA-GT-CTG--TTATTTATA------T-ATATAAATACTATAC-ATATTGT-TAATT-GAA---AT-TG-TA-----TTAG-CA-TATTGT--A-ATATATCATGT------TTT--GGA------GAAT-GAA--AATAAAAAAAATACtttttatatatttcatgtattggagaataaaagaagaat
gi|6 : AA-AAAGC-ATGAAAAT-----TGTC-TCTACAAAAGTG-AATT-A--ATTTTTGTAGATGTAAATA-TTT--A-TTC---TATGTCAAC---TC--TG---GGTATT---TT------A---TGAAAGCaaaaaa
gi|3 : atgtatacatgtatgtgaaaacctatatggtgcattctattttttgtgtttcatgtttttacaacatctattttttattaatttcataggcagtaaatttaatatatatattttgtacagaagatctaagacatgattctttcaaacatttttTCTACAAAAGTG-AATT-C--ATTTTTGTGGATGTAAATA-TTT--A-TTC---TATGT---TAACTC--TG---GGTATT---TT------A---TGAAAGCgatgcattatgaagatgaaggtttcctattgcattaaatttgataattccattgttaaatgtatctagcaacataatcaggagacgaattataaacaaaaaggttcaagaatatgttttagatttcgataatcttaactgtatgttgttggttttttttgttgttgttcattttccttttttctttgaactttttaaaacacgaatataaaacacactcaaaacattgatttgctgcctccaaaattgacactaacttaatagcaccatatggtaaaatccaatgttattcactattcaaatactacgattaagatgagatattttctgtagaaaataatctgttatttgtatatgtaaatactatacatgctgttaattgaaattgtactaacatattgtaatatatca
gi|15 : aaacctatatggtgcattttttgcgtttcatgtttttacaacatccaccttttattaatttcaaaggcagtgaatcaaaaatatatatatttttacagaagatctgaggcatgattctttcaagcatttTCTACAAAAGTG-AATA-A--ATTTTTGTAGGTGTAAATA-TTT--A-TTC---TATGT---T---TT--CTCTGGGTATT---TC------A---TGAAAGCgacaatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaaacaaaaggtcaagaatattttttagattttgctactcttaactgtatgctgttgtgttcttgttgttgttttgttgtttttttttattgtttttttgttttttaaatttctaattatttaagagaaaaaatcacacattcaaaacattgattggcttgcctccaaaactgacacttacttaatgacaccatatggtaaaatccaatgttattcactattcaaataatacaattaaaataaggtagtatcggtagaaaataatctgttatttatatatgtaaatactatacatgttgttaattgaaattgtattagcctattgtaatatatcttgtattggagaatgaaaatgaaaaaatacaaaa
gi|10 : cagtctactgatctttagaaactatatgttgagtgtctagacactatacgttgagtgtcaatgaggcattgtttattttttgcgtttcagtttttgcaaaatcgatttatatttatctcacaggcagtaaagtatgaatatatttttacataagatctaacatgattctttcaagcatttttTTTTGTAGA-GACAATT-TTC--ATTTT---TATGC---T---TT--TT---GATGTA---TT------A---TGTAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAATAGCAACATAATCAGAAGACGAATCATGAACAAAAAGGGTCAAGAATAT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTT---GTT--------TGTTAT-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCCT---TT-------TTTCTTT-TAGCT-T-TCTAA------AACACGAAAAAAACA-ACAACACA-C-ACTCAAAACATTGATTTAC-AGCATCC-AAA-ATTGACACT---TAC---------T--TA-A----T--AGTACCATATG-G--TAAA--ATCAAATG--TTATCCA--CTATTCAAATAATATAATTAAAATAA-GATAT-T-----T---T--CT--G--TAGAAAATA-AG-CTG--TTATTTATATATATCT-ATATAAATACTATAC-ATGTTGT-TAATTGGAA---AT-T--TA-----TTAG-CA-TATTGT--A-ATATCTCCTGT------ATT--GGA------gacaattttctttttttattctttttgatgtattacaaaggttta
gi|39 : TT-TTC--A--------ATGC---T---TA--TT---GTTGAA---TC------A------AGATTTC--AATGAATTATTTTTGATAATTCCA----------TTGTTAAA
gi|11 : TT---AATAC---T---TT--TT---GATGTA---GA------A---TGAAGGTTTCCCAGTGAATTATATTTGATAATTCCAATGTTGAAA-TTGTTATATGTAAATAGCAACCTAACCAGAAGAC------TAACAAAAATG--TCAAGAATAT-TT-TT------------GAA--TTTT-C-ACTGTG------------------------------------C----TTTT----AT-TG---TATGT--TT--TTTTTTCG---TT-------TTCTTTC-TAATT-A-TTGAA------AG---GAAAAAAA-A-A----CAA-T-ACTCAAAACATTGATTGAC-AGCCTCC-AAA-ATTGATACT---TACA--------A--TACA----T--AGCATCGTAT--G--TAAAT-ATCCAGTG--TTATACA--CTATTCATATAATATAATTTAGAT---GATAT-T-----A---T--CT--A--TAGAAAAAA-AT-ATG--TCACTGAT-------T----TAAAAACTATAC-ATGTTGT-AATTT-GAA---AT-TG-TA-----TCAA-TA-TAATGTA-A-ATGTTTTATGT------ATT--TGA------GAAT-G
gi|33 : GATAATACGA----------TTGT-AAATCTGCAC-GCA-CACAATCGGATAAC---TTACAGA-AAAA-GGTTCAAGTAGATATT-TTTAG--ATATTT-G
gi|13 : AGCCAC-TAATCAGAAGAC----T-TAAA-AAAA---GTAAAGACTAT-TT-TTTTTTTAT-TTC-GCTATTCTTTA-ACTGCAAGT---T-TG---TTT--------T----T-T----T----GTTT----GT-T------TCT--T----TTTTAGT---TT-------TGTCTTT-CAAAT-TATTTAA------GA---GAAAAAAA-A-A--------C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-CTTGATACT---AAC---------AA-TATA----T--AGAACTATATA-G--TAAT--ACCCAATG--TTATACG--CTATTCAAATAATATAATTAAAATAT-GATAT-T-----A---T--CTCAGTTTAGTAAAAA-AT-CTG--TTACTTATA------TAATGTAAATGCTATAC-ATGCTGT-AAATT-GAA---AT-TG-TA-----TAAA-CA-TATTGT--A-tattttt
gi|12 : aaTAATCAGAAGAC------TAAA--AAA---GTCAAGAATAC-TT-TTTGG--AT-TTTAGATGTTCTT-TTACTGTGAGT---T----------------------------------TTTT----GT-TG---T-TGT--T----------T---TT-------TTTTCTC-TAATT-A-TTTAA------GA---GAAAAAAC-G-A-----CA-CCACTCAAAACATTGATTTGC-TGCCTCC-TAA-ATTGATACT---AAC---------AA-TATA----T--AGCACCATATG-T--TAAG--ATACAATG--TTATACA--CTATTCAAATACTGTAATTAAAATAT-GACAT-T-----A---T--CT--G--TAGTAAAAA-AT-CTG--TTACGTATG------T-ATGTTAATACTGCAC-GTATTGT-AAATT-GAA---AT-TG-CA-----TAAA-CA-TAGTGT--A-GTATTTCATTT------ATT--GGA------GAAT-GAA--AA--AA-AAATTAC
gi|3 : AAACAAAA--GGTCAAGAATAT-TT-TTTAG--AT-TTT-GCTACTCTT-A-ACTGTATGC---TGTTGTGTTC--------T----TGT----TGTTGTTTT----GT-TGTTTT-TTT--TT--ATTGTTTT---TT-------TGTTTTT-TAAAT-T-TCTAATTATTTAA---GAGAAAAA-ATC----ACA-C-ATTCAAAACATTGATTGGCTTGCCTCC-AAA-ACTGACACT---TAC---------T--TA-A----T--GACACCATATG-G--TAAA--ATCCAATG--TTATTCA--CTATTCAAATAATACAATTAAAATAA-GGTAG-T-----A---T--CG--G--TAGAAAATA-AT-CTG--TTATTTATA------T-ATGTAAATACTATAC-ATGTTGT-TAATT-GAA---AT-TG-TA-----TTAG-CC-TATTGT--A-ATATATCTTGT------ATT--GGA------GAAT-GAA--AAT-GAAAAAATACaaaaaa
gi|17 : aaacctatatggtgcattttttgcgtttcatgtttttacaacatccaccttttattaatttcaaaggcagtgaatcaaaaatatatatatttttacagaagatctgaggcatgattctttcaagcatttgctttcataaaatacccagagttaacatagaataaatatttacatccacaaaaatgaattcacttttgtagagacaatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaATAAAAAAGGTCAAGATTAT-TT-TT-AG--AT-TTT-GCTATTCTT-A-ACTGTATGT---TG------------------------------------------T-TG---T-TTT--T----TTTTCTT---TTAAC----TTGCTT----ATT-A-TTTAA------GGCA-------AA-A-A----ACA-C-ACTCAAAACATTGATCTGC-TGCCTCC-AAA-GTTGACACT---CAC---------T--TA-A----T--AGCACCATATT-G--TAAA--ATCCAATA---TATTCA--CTTTTCAAATTATATAATTAAAATAA-GACAG-G-----A---T--CT--G--TAGAAAATA-A---TG--TTGTTAAT----------TG-AAAT-------------------------------TG-TA-----TTAG-TC-TATTGT--A-ATATCTCATGT------ATT--GGA------GCAT-GAA--AAT-AAAAAAATACaaaa
gi|23 : gT-TTATTTAG--AT-TCT-GCAATTCTT-A-ACTGT---T---TTTT---TTG--------T----T-TG---T----TTTT----AT-TG---T--GT--TT--AACTTTCT---T------------------ATT-A-TTTAA------GA---GAAAAAAA-A-A-----CA-C-ACTTAAAACATT-----------------------GATATT---AAC---------T--TA-A----T--AGCACCATATG-G--TAAA--ATCCCATG--TTATTCA--CTAATCAAATAATATAATAAAAATAA-GATAT-A-----A---T--CT--G--TAGAAAAAA-AT-CTG--TTATaca
gi|16 : CTATATGT---T-CT---TTT--------G----T-G----T----GTGT----GTGTG---TGTGT--T----TTTTTCT---TT-------CTT-----TAATT-A-TTTAA------GAAAGGAAAGGAA-A-T--------C-ACTTAAA-CTTTGACTATA-TGTTTCG-TAA-AT---CA-T---AA--------------A-A-------AACACCACGTG-G--CATCTCATTTGATGACTGAATGAAACTATTTCGATGATATCCTTAAAATAT-GTTAT-C-----A---T--TT--G--TAGGAAAAA-AG---G--TTACTTGTG------T-AT----ATGCTATTC-AGGCCGT-AAATT-GGA---AT-TA-C------CTAGACA-TATTGT--T-TCATTCCATGT------ATT--GGA------GAAT-TAA--AAT-AA
gi|14 : tgtttT---TCT--------T----T-T----T----TTGT----GT-T----T-TGT--TTCTATTTT------TT-------TATATTT-TAATT-A-TTCAA------GA---GAAATCAA-A-T----GCA-C--TTCAA--CGTTGCTTTGC-TGCCTCC-AAA-ATTTATACT---AAC-------------A-ACATAT--AGCACCATATG-T--GAAA--AGTCTATG--TTATATA--TTATTCAAATGATATACTTAAACTAT-GATAT-T-----A---T--CT--G--TAGAAAAAA-CT-CT---------------------TGTAAATGCTATAC-ATGATGT-AAATT-G-A---AT-TG-TT-----TAAA-CA-TATTGT--C-ATAGTGCATGT------ACT--GGA------GAAT-GTA--AAT-A--AAAATacattaaaaaaaa
gi|18 : gatatatggtttctctctgTTCTTTCTAATTAT-TC------------AGGAGAAAAA-T-A----ACAAC-ACTCAAAACATTAATAAGC-TATCTCC-AAA-TTGGATACT---AAC---------A--AA-A----TGTAGCACCATATG-G--TAAG--ATCCAATG--TTATTCT--CTATTTAAATAATATAATTAAAATAA-GATAT-T-----A---T--CT--G--TAGAAAATA-AT-CTGTTTTTTTTATA------T-ATGTAAATACTATAG-ATGTTGT-AAAAT-GAA---AT-TG-TA-----TTAA-CG-TATTGT--A-ATATTTCATGT------ATT--GGA------GAAT-GAA--AAT-AAAAAAATACctaccaaaca
gi|19 : cTTTTT-TAATTAT-TATAA-----------GAAATAAA-A-T--------T-ACTTAAA-CATTGATTAGT-TGTTT---AAA-ATTTATACT---AACAACATATACT--TG------T--ATCACCATATG-T--GAAT--ATTCAATG--TAATACA--TCAATGAAATTGTATACTTAAAATAC-GAAAG-T-----TA--T--CT--G--TAGAAAA--------G--T-ATTTTCT------T-GTGTAGATGTTATAC-ATGCTGT-CAATT-TGA---AT-TA-T------TTAATCA-AATTTTT-ATATATTTCATGT------ATT--GGA------GAAT-AAA--Aa
gi|20 : A------AACATGAAAAAAA-A-AC---ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-A----T--AGCACCATATG-G--TAAA--ATCCAATG--TTATCCA--ATATTCAAATAATATAATTAAAATAA-TATAT-T-----T---T--CT--G--TAGAAAATA-AT-CTG--TTATTGATA------T-ATAAAAATACTATAC-ATGTTGT-TAATT-GAA---AT-TG-TA-----TTAG-CA-TATTGT--A-ATATCTCATAT------ATT--GGA------GAAT-AAA--AAT-AA-AAAATgaagaat
gi|7 : AAAA-T-A----TCA-C-AT---AAACCTTGATTTGC-TGCCTTCTAAA-GTT---------------------------A----T--AACACCATATGTGCCTA-----TTCAA-G--TTATT------ATTTAAATAATATACTTAAAATGT-GTTAT-C-----A---T--CG--T--TAGAAAA-A-AT-ATG--TTACCTGT-----------GTAAATGCTACAC-ATGTTGT-AAATT-GGATATAT-TA-TAGCAACCGAG-AAGTGTTGTGAG-ATATATCATATTAC---ATTACAGAAATTATGAAT-GAACCGAC-AAAAAAATAta
gi|21 : tatgtatagttaaatgtgtatttgtaaaatcatgtatagccagtatttattttatttttttgtcgttttttgtgcaacaacgagttttcaactttataggcagtgaattctatttttatacataagatccaacattgttctttccagaattgtttgctttcatgagatactccaattaaatatagaatacctacttaaatctgaaaatcactcccaactattttagaaatgatttttaatttaatgctttttgatgagttaagcacgtttattagtaataacatatgataatttcaaatgttaaagttgtaaagtgtaaatagcaatttgaccggaagattaaagataaaagaaaacaacatgaaaggttttttactcttattgtgtcattaaagtgAAACATTGAAATGC-TGCCTCC-ATA-ATTTATACTTGCAA-------------TATA----T--AGCACCATATG-T--GAAG--GTCCAATG--TGATGCA--TTATT-AAATAGTATAATTAAAGTG----TGT-T-----T---TAACT--G--AAGAAAAAA-AAACTGG-TTA---AT-------T-GTGTAAATGCTATAC-ATGTTGT-AAATT-GAA---AT-TA-TT-----TAAA-CA-TATTGT--A-ATAGTTGATGTACAGTAATT--GGA------Gt
gi|25 : aaacagtccttttcaacatatcatgcttAACATT--TTTAC-TAC-----AAGTATATATACT---AAC---------AA-TATA----T--AGCACCATATG-T--CAAC--ATCCAATG--TTATGCG--TTATTTAAATAATATACTTAAACTAT-GATAT-TACAAATGTAT--CT--G--TAGAAAAGA----CTG--TTACT----------T-GTGTAAATGATATAC-ATGTTGTATAA
gi|26 : aaacAA-ATTTATACT---A-C---------TAATATA----T--AGCACCATATG-T--GAAG--ATCCAATT--TCATGCA--CTATTTAAATGGTATTCTTAAAATAA-GAAAT-T-----A---T--C---A--TAGGAAA-A-ATACTG--TT-TCT---------C-GTGTAAATacatattg
gi|27 : ttatatatgaaaataaattactagtggcaataatatttCTATATG-G--GACG--ATTCAATG--C----------ATTTAAATTATATACTTGAA-TAT-GTTAT-TACAA-T---T--AT--A--TAGAAAAAA-AT-ATG--TAACT------------A-GTTAATGCTTTAC-ATACTGT-AAATT-GAA---ATATA-TA-------AA-AA-CAATGT--C-ATGTATCGTGT------ATT--GGA------GAAT-GAA--AAT-AAtgaagtggtatgaac
gi|28 : ATATAATTACCATTATGATATGT-----T---T--TT--G--TAGAAAAAA-A--ATG--CTACTTTTG------T-ATGAAAATACTATAC-ATGTTGT-AAATT-GCT---AT-TG-TA------TAA-TA-AATTGT--A-ATATTTCATGT------ATT--GGA------TAAT-GAA--AAT-AATAAATTACaacaacaa
gi|29 : actatTAATTAAA-TAC-GTTAT--------------CT--G--TAGAAAAAATAT-CTA--TTACTTACG------T-AGGTCAATACTATAC-ATGTTGT-AAATT-AAA---AT-TGATA-------AA-CA-TTCTGT--A-ATATGTCATGT------ATT--TGA------GAAT-AAA--AAT--ATAAAACAagaaa
gi|34 : TATTT---------T-GTATAAATGCTATTTTATATTGT-AAATT-AAA---AT-TG-T-------TAGACA-TACTGT----------TATGT------ATT--TGA------GAAT-GAA--AAT-AACCAAATACataccaaaaaaaa
gi|37 : TTATA------A-GTGCAAATGCTATGC-ATGCTGT-AAATT-AAA---AT-TG-TA-----aa
gi|35 : attgaaaatatatgattattacataaaactaTAAATACTATAC-ATGTTGT-TAATT-GAA---AT-TG-TA-----TTAG-CA-TATGGT--A-ATATTTCATGT------ATT--GGA------GAAT-GAA--AA--AACAAAATACtaaaca
gi|36 : GCTGT-AAATT-GGA---AT-TG-TT-----TAAA-CA-TACTGT--A-TTATTGCATGT------ATT--GAA------GAAT-GAA--Aaaaa
gi|38 : atgtacactaataaaatgaaacgtaATT-GAA---AT-TG-TA-----TAAA-CA-TATTGT--C-ATAATTCATGT------ATT--GGA------GAAT-GAA--AAT-AAAAGATTACct
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|24 ): ACTTCCGATCTCATCTTAAAAATCACAAATAAATTGTTTTTTTTATATTTAAAAGATTATGTATATAAATTAAAAAAAAAACAACGTAAACCCAATACATACAAAATGTATAGCATTATACTATATATTTTTTCCCCATTATTAACAAGGAATGATATATATCCTTTATGAATAACAAAGGATATAAAGACA
Unaligned ( gi|31 ): TTGAGTACATAATATATATATATATATATATATGTGTGTGTGTACGTACGTCCGTGTGTCCGATAGACAGATTACTGTATACATGTTTGTGAAAAGTGCATTTAATTATT
Unaligned ( gi|32 ): ATAATATATCAACATGATAGTGAATAACAAAGGATACAAAGACACATTTGTGCAGAACGTTTTTATGAATCATTTTAAACAGTTCGCTATATATATTT
Unaligned ( gi|40 ): TATATATATATATATATATATGTGTGTATATATATACCTCTGTA
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 111111 111 1111 000000000000000000000000000000000000 11 2222222222 33333333333333333333333333333 2222222222222222 222222222222222 1111111
lowQualScore : 8 5 444444 333 5 5 0 5 0 3 0000 0 000000000000000000000000000000000000 0 99 4 7777 88 3 1 77 44 2 0 555 888888 0 1 2 3 5555555555 7 7 0 5555 2 2 33 2 2 4 444 444 44444444444444444444444444444 5555 5555 2 444 5 33 555 8888 444 88888888 2 888 1 9999999999999999 2 2 8888 4 2 1 1 1 0 333 333333333333333 22 1 22 33 66 66666666 44 1 77777777 44444 22 22 22 4 1 3 1 222 0000000 1 0 1 1 1 1 333 4 555555555 55 1 1 777777 22 444444 22 2 2 2
lowQualScore : . . ...... ... . . . . . . .... . .................................... . .. . .... .. . . .. .. . . ... ...... . . . . .......... . . . .... . . .. . . . ... ... ............................. .... .... . ... . .. ... .... ... ........ . ... . ................ . . .... . . . . . . ... ............... .. . .. .. .. ........ .. . ........ ..... .. .. .. . . . . ... ....... . . . . . . ... . ......... .. . . ...... .. ...... .. . . .
lowQualScore : 0 7 444444 444 0 0 1 0 1 5 0000 7 888888888888888888888888888888888888 7 11 0 7777 66 6 0 22 66 9 6 444 888888 5 0 5 8 8888888888 3 1 5 7777 5 5 77 7 7 5 444 777 44444444444444444444444444444 3333 3333 5 444 0 44 666 1111 444 33333333 2 666 3 1111111111111111 0 0 2222 0 0 8 8 7 9 000 444444444444444 44 7 33 00 55 00000000 22 5 11111111 33333 11 11 11 0 5 1 5 999 1111111 5 4 4 4 5 4 666 3 777777777 00 5 9 444444 22 666666 66 0 0 1
consensus : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTANAAATATATATAT-TATT-----------------T-------TTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATGAA-ATACCCAGAGTTAACATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TT--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------GAC---A-GAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TA----T--CT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TATTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
Reference ( family-620 ) : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTAAAAATATATATATATATT-----------------T-------TTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATAAA-ATACCCAGAGTTAANATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TT--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------GAC---A-GAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TN----T--CT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TATTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
gi|1 : TGTATACATGTATGTG-AAAAAC-TATATGG------TGCATT--CTATTTTT--G-CGTTTCATGTTTTTGCAACATCGATCTTTT-----------T-GGCAATAAATTATAAATATATGT----------------------------------TTTTACAGAAGATCTAA--CATGATTCTTTCA-AGCA----TT--TTTGCTTTCATGAA-ATACTCAGTGTTAACATAAAATAAATATTTACATCTACAAAAATATAATTC--ACTTTGGTAGAAACAATTTTC-ATTTTTATTATTTTTTATGTT---TT------ATGAAAGTTTCCCAGTGAATTA-ATTTGATAATTCCG----------TTGTTAATTGTACACATCATCATAATCAGAAGACGAATTATAAA--ACAATCGTCAA----GAATTA-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTGTATGC---T-TT---TTG--------T----G-T----T----TTTT----GT-TT---T-TGT--TT--AACTTTC--T---T------------------ATT-A-TTTAA------GA------GAAAAAAA-A----------C-ACTCAAAATATTGATTTGC-TGCCTCC-AAA-ATAGATA----------------------------GCACCATATG-G--CTGA-ATCCAATGTTATT-C--------ACTATTTAAATGATATAATTGAAATTA-GATA-T--------TA----T--CT--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTATTAACT-GAAATTGTAT--TAG-CC---------TATTGT--A-ATATTTCATGT------ATT--GGA------GAATGA
gi|10 : aggatgatatatatcttttatgattaacaaaggatataaagaagaatttgtgcaaaaaatttcttgaatcattcaatattcagatatatatatgtgtgtgtgtgtgtatgtatatatatatgtgtgTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGTAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAATAGCAACATAATCAGAAGACGAATCATGAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTT---GTT--------TGTTAT-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAGCT-T-TCTAA------AAC---ACGAAAAAAACA-ACAACACA-C-ACTCAAAACATTGATTTAC-AGCATCC-AAA-ATTGACACT---TAC---------T--TA-AT--AGTACCATATG-G--TAAA-ATCAAATGTTATC-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TT----T--CT--G--TAGAAAATA-AG-CTG-TTATTT--ATATATATCT-ATATAAATACTATAC-AT-GTTGTTAATTGGAAATT-TAT--TAG-CA---------TATTGT--A-ATATCTCCTGT------ATT--GGA------
gi|11 : TTAATACTTTTTGATGTA---GA------ATGAAGGTTTCCCAGTGAATTATATTTGATAATTCCAATGTTGAAA-TTGTTATATGTAAATAGCAACCTAACCAGAAGAC------TAA-CAAAAATG-TCAA----GAATAT-TT-TTGA---AT-TTT-------C-----ACTGTGC----------------------------------------TTTT----AT-TG---TATGT--TT--TTTTTTC--G---TT-------TTCTTTC-TAATTAT-T----------GAA---A-GGAAAAAA-A-A----ACAAT-ACTCAAAACATTGATTGAC-AGCCTCC-AAA-ATTGATACT---TACA--------A--TACAT--AGCATCGTAT--G--TAAATATCCAGTGTTATA-C--------ACTATTCATATAATATAATTTAGAT---GATA-T--------TA----T--CT--A--TAGAAAAAA-AT-ATG-TCACTG--AT-------T----TAAAAACTATAC-AT-GTTGTAATTT-GAAATTGTAT--CAA-TA---------TAATGTA-A-ATGTTTTATGT------ATT--TGA------GAATG
gi|12 : TAATCAGAAGAC------TAAA---AAAG--TCAA----GAATAC-TT-TTTGG--AT-TTTAGATGTTCTT-TTACTGTGAGT---T----------------------------------TTTT----GT-TG---T-TGT--TT-----------T---TT-------TTTCTCT--AATT-A-TTTAA------GA-------GAAAAAA-C-G----ACA-CCACTCAAAACATTGATTTGC-TGCCTCC-TAA-ATTGATACT---AAC---------AA-TATAT--AGCACCATATG-T--TAAG-ATACAATGTTATA-C--------ACTATTCAAATACTGTAATTAAAATAT-GACA-T--------TA----T--CT--G--TAGTAAAAA-AT-CTG-TTACGT--ATG------T-ATGTTAATACTGCAC-GT-ATTGTAAATT-GAAATTGCAT--AAA-CA---------TAGTGT--A-GTATTTCATTT------ATT--GGA------GAATGAA--A---A-AAAA-ATTAC
gi|13 : AGCCAC-TAATCAGAAGAC---TTA------AAAAAAGTAAA----GACTAT-TT-TTTTTTTAT-TTC-GCTATTCTTTA-ACTGCAAGT---T--------T--------G----T-T----T----TTTT----GT-T------TGT--TT--CTTTTTTAGT---TT-------TGTCTTT-CAAAT-TATTTAA------GA------GAAAAAAA-A-A--------C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-CTTGATACT---AAC---------AA-TATAT--AGAACTATATA-G--TAAT-ACCCAATGTTATA-C--------GCTATTCAAATAATATAATTAAAATAT-GATA-T--------TA----T--CTCAGTTTAGTAAAAA-AT-CTG-TTACTT--ATA------TAATGTAAATGCTATAC-AT-GCTGTAAATT-GAAATTGTAT--AAA-CA---------TATTGT--A-aaaaaa
gi|14 : aaT---TCT--------T----T-T----T----TTGT----GT-T----T-TGT--TTCTATTTT--------TT-------TATATTT-TAATT-A-TTCAA------GA------GAAATCAA-A-T----GCA-C--TTCAA--CGTTGCTTTGC-TGCCTCC-AAA-ATTTATACT---AACAACA-----T-----AT--AGCACCATATG-T--GAAA-AGTCTATGTTATA-T--------ATTATTCAAATGATATACTTAAACTAT-GATA-T--------TA----T--CT--G--TAGAAAAAA-CT-CT----------------------TGTAAATGCTATAC-AT-GATGTAAATT-G-AATTGTTT--AAA-CA---------TATTGT--C-ATAGTGCATGT------ACT--GGA------GAATGTA--AAT-A-AAAA-
gi|15 : gatatatggtttctctctgATGA------GGCATTGTTTATTTTTT-G-CGTTTCA-GTTTTTGCAAAATCGATTTAT--ATTTATCTCACAGGCAGTAAAGTATGAATATAT------------------------------------TTTTACATAAGATCTAA--CATGATTCTTTCA-AGCA----TT--TTTGCTTTCATGAA-ATACCCAGAGAAAACATAGAATAAATATTTACACCTACAAAAATT-TATTC--ACTTTTGTAGAGACAATTTTCTTTTTTTATTCTTTTTGATGTA---TT------ACAAAGGTTTtctaccaaaca
gi|16 : cagtctactgatctttagaaactatatgttgagtgtctagacactatacgttgagtgtcaCTATATGT---T--------C--------T----T-T----T----GTGT----GTGTG---TGTGT--GT--GTTTT----T---TT-------CTTTCTT-TAATT-A-TTTAA------GAA---A-GGAAAGGA-A-A----TCA-C---TTAAA-CTTTGACTATA-TGTTTCG-TAA-ATC-ATA---------------------A-AA--AACACCACGTG-G--CA----TCTCATTTGATGACTGAATGAAACTATTTCGATGATATCCTTAAAATAT-GTTA-T--------CA----T--TT--G--TAGGAAAAA-AG---G-TTACTT--GTG------T-AT----ATGCTATTC-AG-GCCGTAAATT-GGAATTAC-C--TAGACA---------TATTGT--T-TCATTCCATGT------ATT--GGA------GAATTAA--AAT-A-AAa
gi|17 : tgtttATAAAAAAGGTCAA----GATTAT-TT-TT-AG--AT-TTT-GCTATTCTT-A-ACTGTATGT---TGTTG--TTT--------T----T-T----T----TTCT----------------T--TT--AACTTGC--T---T------------------ATT-A-TTTAA------GGC---A-------AA-A-A----ACA-C-ACTCAAAACATTGATCTGC-TGCCTCC-AAA-GTTGACACT---CAC---------T--TA-AT--AGCACCATATT-G--TAAA-ATCCAATA-TATT-C--------ACTTTTCAAATTATATAATTAAAATAA-GACA-G--------GA----T--CT--G--TAGAAAATA-A---TG-TTGTTA--AT----------TG-AAAT---------------------------TGTAT--TAG-TC---------TATTGT--A-ATATCTCATGT------ATT--GGA------GCATGAA--AAT-A-AAAA-AATACcattaaaaaaaa
gi|18 : gTTCTTTCTAATTAT-TC--A------G-------GAGAAAAA-T-A----ACAAC-ACTCAAAACATTAATAAGC-TATCTCC-AAA-TTGGATACT---AAC---------A--AA-ATGTAGCACCATATG-G--TAAG-ATCCAATGTTATT-C--------TCTATTTAAATAATATAATTAAAATAA-GATA-T--------TA----T--CT--G--TAGAAAATA-AT-CTG-TTTTTTTTATA------T-ATGTAAATACTATAG-AT-GTTGTAAAAT-GAAATTGTAT--TAA-CG---------TATTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATACaca
gi|19 : cTTTTT-TAATTAT-TATAA------GA----------AATA-A-A----AT--T-ACTTAAA-CATTGATTAGT-TGTTT---AAA-ATTTATACT---AACAACATATACT--TG--T--ATCACCATATG-T--GAAT-ATTCAATGTAATA-C--------ATCAATGAAATTGTATACTTAAAATAC-GAAAGT--------TA----T--CT--G--TAGAAAAG----------TATTT--TCT------T-GTGTAGATGTTATAC-AT-GCTGTCAATT-TGAATTAT-T--TAATCA---------AATTTTT-ATATATTTCATGT------ATT--GGA------GAAT-AA--AAG-A-AGAA-a
gi|2 : TGTATACATGTATGTG-AAAACC-TATTTGG------TGCAT---CTATTTTTT-G-TGTTTCATGTTTTTACAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTAAAAATATATATATATATTTATTTTTTTCTATTATTT-------TTTTTTACAGAAGATCTTAGGCATGATTCTTTCA-AACA----TT--TTTGCTTTCATAAA-ATACCCAGAGTTGAAATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGCTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAATGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GAAATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------AAC---ACGAAAAAAA-A-A----GCA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCGATGTTATT-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TT----T--CT--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAC--TAG-CA---------TATTGT--A-ATATCTCATGT------ATT--GGA------GAATGAA--AAT-A-ACAA-AATACt
gi|20 : A------AAC---ATGAAAAAAA-A-AC---ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATC-C--------AATATTCAAATAATATAATTAAAATAA-TATA-T--------TT----T--CT--G--TAGAAAATA-AT-CTG-TTATTG--ATA------T-ATAAAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TATTGT--A-ATATCTCATAT------ATT--GGA------GAATAAA--AAT-A-AAAA-ATTA
gi|21 : AAACATTGAAATGC-TGCCTCC-ATA-ATTTATACTTGCAA-------------TATAT--AGCACCATATG-T--GAAG-GTCCAATGTGATG-C--------ATTATT-AAATAGTATAATTAAAGTG----TG-T--------TT----TAACT--G--AAGAAAAAA-AAACTGGTTA-----AT-------T-GTGTAAATGCTATAC-AT-GTTGTAAATT-GAAATTATTT--AAA-CA---------TATTGT--A-ATAGTTGATGTACAGTAATT--GGA------G
gi|22 : aaacagtccttttcaacatatcatgcttTCATAGGCATTAAATTTCA---------------------------------T-------TTTTGTACATAGGTTCCAAC-CTTTATTTTTTAATAGT-----TTCGTTTGCTTTCATGAG-GTACTTATATTAAACATAGAATACCTACTTAAATATGCAGAA------------CTTTTGTAGAGATGAGTTTT-AATTTTACGTTTTTT--TGTAATTCT------ATT-AGATTTCTAAGTACATTTTATTTTATATTTCCA----------CTGTTAAAT
gi|23 : T-TTATTTAG--AT-TCT-GCAATTCTT-A-ACTGT---T---TTTT---TTG--------T----T-TG---T----TTTT----AT-TG---T--GT--TT--AACTTTC--T---T------------------ATT-A-TTTAA------GA-------GAAAAAA-A-A----ACA-C-ACTTAAAACATTGAT-----------------------ATT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCCATGTTATT-C--------ACTAATCAAATAATATAATAAAAATAA-GATA-T--------AA----T--CT--G--TAGAAAAAA-AT-CTG-TTAT
gi|25 : AACATT--TTTAC-TAC-----AAGTATATATACT---AAC---------AA-TATAT--AGCACCATATG-T--CAAC-ATCCAATGTTATG-C--------GTTATTTAAATAATATACTTAAACTAT-GATA-TTACAAATGTA----T--CT--G--TAGAAAAGA----CTG-TTACT------------T-GTGTAAATGATATAC-AT-GTTGT
gi|26 : aaacAA-ATTTATACT---A-C---------TAATATAT--AGCACCATATG-T--GAAG-ATCCAATTTCATG-C--------ACTATTTAAATGGTATTCTTAAAATAA-GAAA-T--------TA----T--C---A--TAGGAAA-A-ATACTG-TT-TCT-----------C-GTGTAAATataaacatattg
gi|27 : ttatatatgaaaataaattactagtggcaataatatttCTATATG-G--GACG-ATTCAATGC-----------------ATTTAAATTATATACTTGAA-TAT-GTTA-T--------TACAATT--AT--A--TAGAAAAAA-AT-ATG-TAACT--------------A-GTTAATGCTTTAC-AT-ACTGTAAATT-GAAAT-ATAT--AAA-AA---------CAATGT--C-ATGTATCGTGT------ATT--GGA------GAATGAA--AAT-A-AAAC-AACAtgaagtggtatgaac
gi|28 : ATATAATTACCATTATGATA-TG-------TT----T--TT--G--TAGAAAAAA-A--ATG-CTACTT--TTG------T-ATGAAAATACTATAC-AT-GTTGTAAATT-GCTATTGTAT---AA-TA---------AATTGT--A-ATATTTCATGT------ATT--GGA------TAATGAA--AAT-A-ATAA-ATTACa
gi|29 : actatTAATTAAA-TAC-G----T--------TA----T--CT--G--TAGAAAAAATAT-CTA-TTACTT--ACG------T-AGGTCAATACTATAC-AT-GTTGTAAATT-AAAATTG-AT--AAA-CA---------TTCTGT--A-ATATGTCATGT------ATT--TGA------GAATAAA--AAT-ATAAAACAATACagaaa
gi|3 : AAACC-TATATGG------TGCATT-------TTTT-G-CGTTTCATGTTTTTACAACATCCACCTTTT-ATTAATTTCAAAGGCAGTGAATCAAAAATATATATAT--------------------------------TTTTACAGAAGATCTGAGGCATGATTCTTTCA-AGCA----TT--T--GCTTTCATAAA-ATACCCAGAGTTAACATAGAATAAATATTTACATCCACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTCC-ATcaaaaaaaa
gi|3 : AAACAAAA--GGTCAA----GAATAT-TT-TTTAG--AT-TTT-GCTACTCTT-A-ACTGTATGC---TGTTGTGTTC--------T----TGT----TGTTGTTTT----GT-TGTTTT-TTT--TT--ATTGTTT--T---TT-------TGTTTTT-TAAAT-T-TCTAAT-----TATTTAA-GAGAAAAA-ATC----ACA-C-ATTCAAAACATTGATTGGCTTGCCTCC-AAA-ACTGACACT---TAC---------T--TA-AT--GACACCATATG-G--TAAA-ATCCAATGTTATT-C--------ACTATTCAAATAATACAATTAAAATAA-GGTA-G--------TA----T--CG--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CC---------TATTGT--A-ATATATCTTGT------ATT--GGA------GAATGAA--AAT-G-AAAA-AATACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaaacaaaaggtcaagaatattttttagattttgctactcttaactgtatgctgttgtgttcttgttgttgttttgttgtttttttttattgtttttttgttttttaaatttctaattatttaagagaaaaaatcacacattcaaaacattgattggcttgcctccaaaactgacacttacttaatgacaccatatggtaaaatccaatgttattcactattcaaataatacaattaaaataaggtagtatcggtagaaaataatctgttatttatatatgtaaatactatacatgttgttaattgaaattgtattagcctattgtaatatatcttgtattggagaatgaaaatgaaaaaatacaaaa
gi|30 : aaacctatatggtgcattttttgcgtttcatgtttttacaacatccaccttttattaatttcaaaggcagtgaatcaaaaatatatatatttttacagaagatctgaggcatgattctttcaagcatttgctttcataaaatacccagagttaacatagaataaatatttacatccacaaaaatgaattcacttttgtagagacaatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaCAGTAAATCATAAATATAG----------------------------------TTTTTTACATAATATCTAA--CATGATTCTTTTA-AGTACGTATG--TTTGCTGTCATGAA-ATACTCAAATTAAACATAGAATAAATATTTACATCTAC--AAAT----TTC--CATTGT-TAGAGACGATTTTC-aaaa
gi|33 : GATAATACGA----------TTGT-AAATCTGCAC-GCA-CACAATCGGATAAC---TTACAGA--AAAAGGTTCAA----GTAGATATT-TTTAG--ATATTT-G-TATTTTT-
gi|34 : TATTT-----------T-GTATAAATGCTATTTTAT-ATTGTAAATT-AAAATTGT----TAGACA---------TACTGT----------TATGT------ATT--TGA------GAATGAA--AAT-A-ACCA-AATAC
gi|35 : TAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TATGGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AA--A-ACAA-AATACaa
gi|36 : AAATG--AAAC-GTAGCTGTAAATT-GGAATTGTTT--AAA-CA---------TACTGT--A-TTATTGCATGT------ATT--GAA------GAATGAA--Aaaaa
gi|37 : atgtacactaataTT--ATA------A-GTGCAAATGCTATGC-AT-GCTGTAAATT-AAAATTGTAT--AAA-CA---------ct
gi|38 : attgaaaatatatgattattacataaaactaATT-GAAATTGTAT--AAA-CA---------TATTGT--C-ATAATTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAG-ATTAC
gi|39 : atTTTTC-A-----ATGCTTATTGTTGAA---TC------A---AGATTTC--AATGAATTATTTTTGATAATTCCA----------TTGTTAAAaaaaaga
gi|4 : CC-TATATGG------TGCATT--CTATTTTTC-G-CGTTTCATGTTTATGCAACATCGATTTTTT-ATTTATTTCACAGGCAGTAAATCAAAAATATAT--------T-----------------T-------TATTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATCAA-ATACCCAGAGTTAACACAGAATAAAAATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATGTTTATGCTTTATGGTGTA---TT------ATGAAGGTTTCCTAGTGAATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACGGCAACATAATCAGAAGACGAATTATAA--AAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTTTATGT---TGTTGTGTTT--------T----T-TGGGGT----TTTTTTTGGT-TG---T-TGTTGTT--GTTTTTT--TCAGTT-------TTTTTTT-TAACT-T-TCTAATTTTTTAAG---A-G-AAAAAA-A-A----AC----------AACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATACG-G--TAAA-ATCCAATGTTATT-C--------GCTATTCAAATAATATAATTAAAATAA-GATA-G--------TA----T--CT--G--TAGAAAGTA-AT-CTG-TTATTT--ATA------T-ATGTAAGTGCTAAAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CC---------TATCGT--A-ATATCTCATGT------ACT--GGA------GAATGAA--AAT-A-AAAA-ATTAC
gi|5 : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT-----TTTTTT-G-CGTTACATGTTTTTACAACATCGATTTTTTTATTAATTTCATAGGAAGTAAATTAAATATATATATATATATT-----------------TATTTATTTTTTTTACAGAAGATCTAAGGCATGATATTTTAA-AACA----TT--TTTGCTTTCATAAA-ATACCCAGAGTTGACATAAAATAAATATTTACATCTTCAAAAAGG-AATTC--ACTTTCGTATAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTATTGCATTAGATTTGATAATTCCG----------TTGTTAAATGTAAACAGAAACATAACCAGAAGACGAATTATAAACGAAAAGGGTCAA----GAATTT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTTG--TTTGTTTGTTGT----T-T----T----TTTT----GC-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAACT-T-TCTAA------AAC---ACGAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAA-----------TAT-------------------AAT--------TGAAATAA-GATA-T--------TT----T--CT--G--TAGACAATA-AT-CTG-TTATTT--ATA------T-A--TAAATACTATAC-AT-GTTGTTAACT-GAAATTGTAT--TAG-CA---------TATTGC--A-ATATCTCATGT------ATT--GGA------GAATAAA--AAA-A-AACA-AACAaaaaaa
gi|6 : aTGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-TGTTTCATGTTTTTACAACATCTATTTTTT-ATTAATTTCATAGGCAGTAAATT-----TA-ATATATATATT-----------------T-------TGT---ACAGAAGATCTAAGACATGATTCTTTCA-AACA----TT--TTTGCTTTCATAAA-ATACCCAGAGTTGACATAGAATAAATATTTACATCTACAAAAATT-AATTC--ACTTTTGTAGAGACAATTTTC-------ATGCTTTTTGATGCA---TTATGAAGATGAAGGTTTCCTATTGCATTAAATTTGATAATTCCA----------TTGTTAAATGTATCTAGCAACATAATCAGGAGACGAATTATAAACAAAAAGGTTCAA----GAATAT-GT-TTTAG--AT-TTC-GATAATCTT-A-ACTGTATGT---TG-T---TGG--------T----T-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-GAACT-T-TTTAA------AAC---A-CGAATATA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATT-C--------ACTATTCAAATACTACGATTAAGATGA-GATA-T--------TT----T--CT--G--TAGAAAATA-AT-CTG-TTATTT--GTA------T-ATGTAAATACTATAC-AT-GCTGTTAATT-GAAATTGTAC--TAA-CA---------TATTGT--A-ATATATCAaaaa
gi|7 : aTGTATTTGTAAAATCATGTATAGCCAGTATTTATT--TTATTTTTTTGTCGTTT----TTTGTGCAACAACGAGTTTTC-A---ACTTTATAGGCAGTGAATTC--------------TATT-----------------T-------TTAT--ACATAAGATCCAA--CATTGTTCTTTCC-AGAA----TTG-TTTGCTTTCATGAG-ATACTCCAATTAAATATAGAATACCTACTTAAATCT--GAAAATC-ACTCCCAACTATTTTAGAAATGATTTTT-AATTTAATGCTTTTTGATGAG---TT------AAGCACGTTTATTAGTA-ATAACATATGATAATTTCAAATGTTAAAGTTGTAAAGTGTAAATAGCAATTTGACCGGAAGATTAAAGATAAAAGAAAA----CAACATGAAAGGT-TT-TTTA
gi|7 : tatgtatagttaaatgAAAA-T-A----TCA-C-AT---AAACCTTGATTTGC-TGCCTTCTAAA-GTT---------------------------AT--AACACCATATGTGCCTA----TTCAA-GTTAT-------------TATTTAAATAATATACTTAAAATGT-GTTA-T--------CA----T--CG--T--TAGAAAA-A-AT-ATG-TTACCT--GT-----------GTAAATGCTACAC-AT-GTTGTAAATT-GGA--TATATTATAG-CAACCGAGAAGTGTTGTGAG-ATATATCATATTAC---ATTACAGAAATTATGAATGAACCGAC-A-AAAA-AATActcttattgtgtcattaaagtgaaaatatcacataaaccttgatttgctgccttctaaagttataacaccatatgtgcctattcaagttattatttaaataatatacttaaaatgtgttatcatcgttagaaaaaatatgttacctgtgtaaatgctacacatgttgtaaattggatatattatagcaaccgagaagtgttgtgagatatatcatattacattacagaaattatgaatgaaccgacaaaaaaatat
gi|8 : tatgtatagttaaatgtgtatttgtaaaatcatgtatagccagtatttattttatttttttgtcgttttttgtgcaacaacgagttttcaactttataggcagtgaattctatttttatacataagatccaacattgttctttccagaattgtttgctttcatgagatactccaattaaatatagaatacctacttaaatctgaaaatcactcccaactattttagaaatgatttttaatttaatgctttttgatgagttaagcacgtttattagtaataacatatgataatttcaaatgttaaagttgtaaagtgtaaatagcaatttgaccggaagattaaagataaaagaaaacaacatgaaaggttttttactcttattgtgtcattaaagtgA----TT--TTTGTCTTGGCAAATATTTTCAGTTGTAAAA---AATAAATACTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTGTTTGATGTA---TT------ATGAAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAAAAGCAACATAATCAGAAGACGAATTATAAATAAAAAGGGTCAA----GAATAG-TT-TTTAA--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTT---GTT--------T----G-T----T------------GT-TG---T-TGT--TT---TTTTGC--T---TTGTTCATTTTTCTTT-TAACT-T-TCTAA------AAC---C-GGAAAAAA-A-AC---ACA-C-ACTCAGAACATTGATTTAC-TGCCCCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATTCAATGCTATC-C--------ACTATTCAGATAATATAATTAAAATAA-GATA-T--------TT----T--CT--G--TAGAAAACA-AT-CTG-CTATTT--ATA------T-ATATAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TATTGT--A-ATATCTCATGT------ATC--GGA------TAATGAA--AAT-A-AAAA-AGTACt
gi|9 : GAGTTGACATAAAATAAATATTTACATCTAAAAAAATG-AATTC--ATTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTATTACATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATTAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-AGAATTATT-G-ACTGTATGTTGGTGTT---TTTTTTG----T----T-T----T----TTTT----GC-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAACT-T-TCTAA------AAC---ACG--AAAAA-A-A----ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGACAAT---TAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATC-C--------ACTATTCAAATAATATAATCAAAATAA-GATA-T--------TT----T--CT--G--AAGAAAATA-GT-CTG-TTATTT--ATA------T-ATATAAATACTATAC-AT-ATTGTTAATT-GAAATTGTAT--TAG-CA---------TATTGT--A-ATATATCATGT------TTT--GGA------GAATGAA--AATAA-AAAA-AATACaaaaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): ACTTCCGATCTCATCTTAAAAATCACAAATAAATTGTTTTTTTTATATTTAAAAGATTATGTATATAAATTAAAAAAAAAACAACGTAAACCCAATACATACAAAATGTATAGCATTATACTATATATTTTTTCCCCATTATTAACAAGGAATGATATATATCCTTTATGAATAACAAAGGATATAAAGACA
Unaligned ( gi|31 ): TTGAGTACATAATATATATATATATATATATATGTGTGTGTGTACGTACGTCCGTGTGTCCGATAGACAGATTACTGTATACATGTTTGTGAAAAGTGCATTTAATTATT
Unaligned ( gi|32 ): ATAATATATCAACATGATAGTGAATAACAAAGGATACAAAGACACATTTGTGCAGAACGTTTTTATGAATCATTTTAAACAGTTCGCTATATATATTT
Unaligned ( gi|40 ): TATATATATATATATATATATGTGTGTATATATATACCTCTGTA
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 111111 111 00000000000000000000000000000000 11 2222222222 33333333333333333333333333333 2222222222222222 222222222222222 1111111
lowQualScore : 8 5 444444 333 5 5 0 5 0 3 77 0 99999999999999999999999999999999 0 99 4 7777 88 55 77 44 2 0 555 888888 0 1 2 3 5555555555 7 7 0 5555 2 2 33 2 2 4 444 444 44444444444444444444444444444 5555 5555 2 444 5 33 555 8888 444 88888888 2 888 1 9999999999999999 2 2 8888 4 2 1 1 1 0 333 333333333333333 22 1 22 33 66 66666666 33 1 77777777 3333 22 22 4 1 3 1 222 0000000 1 0 1 1 1 1 333 4 555555555 1 33 1 1 777777 22 444444 22 2 2 2
lowQualScore : . . ...... ... . . . . . . .. . ................................ . .. . .... .. .. .. .. . . ... ...... . . . . .......... . . . .... . . .. . . . ... ... ............................. .... .... . ... . .. ... .... ... ........ . ... . ................ . . .... . . . . . . ... ............... .. . .. .. .. ........ .. . ........ .... .. .. . . . . ... ....... . . . . . . ... . ......... . .. . . ...... .. ...... .. . . .
lowQualScore : 0 7 444444 444 0 0 1 0 1 5 22 9 77777777777777777777777777777777 9 11 0 7777 66 00 22 66 9 6 444 888888 5 0 5 8 8888888888 3 1 5 7777 5 5 77 7 7 5 444 777 44444444444444444444444444444 3333 3333 5 444 0 44 666 1111 444 33333333 2 666 3 1111111111111111 0 0 2222 0 0 8 8 7 9 000 444444444444444 44 7 33 00 55 00000000 33 5 11111111 3333 11 11 0 5 1 5 999 1111111 5 4 4 4 5 4 666 3 777777777 5 55 5 9 444444 22 666666 66 0 0 1
consensus : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTANAAATATATATAT------------------T--TT---TTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGTTAACATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TT--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------GAC---A-GAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
Reference ( family-620 ) : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTANAAATATATATAT------------------TATTT---TTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGTTAACATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TT--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------GAC---A-GAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
gi|1 : TGTATACATGTATGTG-AAAAAC-TATATGG------TGCATT--CTATTTTT--G-CGTTTCATGTTTTTGCAACATCGATCTTTT-----------T-GGCAATAAATTATAAATATATGT------------------------------TTTTACAGAAGATCTAA--CATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACTCAGTGTTAACATAAAATAAATATTTACATCTACAAAAATATAATTC--ACTTTGGTAGAAACAATTTTC-ATTTTTATTATTTTTTATGTT---TT------ATGAAAGTTTCCCAGTGAATTA-ATTTGATAATTCCG----------TTGTTAATTGTACACATCATCATAATCAGAAGACGAATTATAAA--ACAATCGTCAA----GAATTA-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTGTATGC---T-TT---TTG--------T----G-T----T----TTTT----GT-TT---T-TGT--TT--AACTTTC--T---T------------------ATT-A-TTTAA------GA------GAAAAAAA-A----------C-ACTCAAAATATTGATTTGC-TGCCTCC-AAA-ATAGATA----------------------------GCACCATATG-G--CTGA-ATCCAATGTTATT-C--------ACTATTTAAATGATATAATTGAAATTA-GATA-T--------TA----TCT--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTATTAACT-GAAATTGTAT--TAG-CC---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGA
gi|10 : aggatgatatatatcttttatgattaacaaaggatataaagaagaatttgtgcaaaaaatttcttgaatcattcaatattcagatatatatatgtgtgtgtgtgtgtatgtatatatatatgtgtgTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGTAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAATAGCAACATAATCAGAAGACGAATCATGAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTT---GTT--------TGTTAT-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAGCT-T-TCTAA------AAC---ACGAAAAAAACA-ACAACACA-C-ACTCAAAACATTGATTTAC-AGCATCC-AAA-ATTGACACT---TAC---------T--TA-AT--AGTACCATATG-G--TAAA-ATCAAATGTTATC-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAATA-AG-CTG-TTATTT--ATATATATCT-ATATAAATACTATAC-AT-GTTGTTAATTGGAAATT-TAT--TAG-CA---------TA-TTGT--A-ATATCTCCTGT------ATT--GGA------
gi|11 : TTAATACTTTTTGATGTA---GA------ATGAAGGTTTCCCAGTGAATTATATTTGATAATTCCAATGTTGAAA-TTGTTATATGTAAATAGCAACCTAACCAGAAGAC------TAA-CAAAAATG-TCAA----GAATAT-TT-TTGA---AT-TTT-------C-----ACTGTGC----------------------------------------TTTT----AT-TG---TATGT--TT--TTTTTTC--G---TT-------TTCTTTC-TAATTAT-T----------GAA---A-GGAAAAAA-A-A----ACAAT-ACTCAAAACATTGATTGAC-AGCCTCC-AAA-ATTGATACT---TACA--------A--TACAT--AGCATCGTAT--G--TAAATATCCAGTGTTATA-C--------ACTATTCATATAATATAATTTAGAT---GATA-T--------TA----TCT--A--TAGAAAAAA-AT-ATG-TCACTG--AT-------T----TAAAAACTATAC-AT-GTTGTAATTT-GAAATTGTAT--CAA-TA---------TA-ATGTA-A-ATGTTTTATGT------ATT--TGA------GAATG
gi|12 : TAATCAGAAGAC------TAAA---AAAG--TCAA----GAATAC-TT-TTTGG--AT-TTTAGATGTTCTT-TTACTGTGAGT---T----------------------------------TTTT----GT-TG---T-TGT--TT-----------T---TT-------TTTCTCT--AATT-A-TTTAA------GA-------GAAAAAA-C-G----ACA-CCACTCAAAACATTGATTTGC-TGCCTCC-TAA-ATTGATACT---AAC---------AA-TATAT--AGCACCATATG-T--TAAG-ATACAATGTTATA-C--------ACTATTCAAATACTGTAATTAAAATAT-GACA-T--------TA----TCT--G--TAGTAAAAA-AT-CTG-TTACGT--ATG------T-ATGTTAATACTGCAC-GT-ATTGTAAATT-GAAATTGCAT--AAA-CA---------TA-GTGT--A-GTATTTCATTT------ATT--GGA------GAATGAA--A---A-AAAA-ATTAC
gi|13 : AGCCAC-TAATCAGAAGAC---TTA------AAAAAAGTAAA----GACTAT-TT-TTTTTTTAT-TTC-GCTATTCTTTA-ACTGCAAGT---T--------T--------G----T-T----T----TTTT----GT-T------TGT--TT--CTTTTTTAGT---TT-------TGTCTTT-CAAAT-TATTTAA------GA------GAAAAAAA-A-A--------C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-CTTGATACT---AAC---------AA-TATAT--AGAACTATATA-G--TAAT-ACCCAATGTTATA-C--------GCTATTCAAATAATATAATTAAAATAT-GATA-T--------TA----TCTCAGTTTAGTAAAAA-AT-CTG-TTACTT--ATA------TAATGTAAATGCTATAC-AT-GCTGTAAATT-GAAATTGTAT--AAA-CA---------TA-TTGT--A-aaaaaa
gi|14 : aaT---TCT--------T----T-T----T----TTGT----GT-T----T-TGT--TTCTATTTT--------TT-------TATATTT-TAATT-A-TTCAA------GA------GAAATCAA-A-T----GCA-C--TTCAA--CGTTGCTTTGC-TGCCTCC-AAA-ATTTATACT---AACAACA-----T-----AT--AGCACCATATG-T--GAAA-AGTCTATGTTATA-T--------ATTATTCAAATGATATACTTAAACTAT-GATA-T--------TA----TCT--G--TAGAAAAAA-CT-CT----------------------TGTAAATGCTATAC-AT-GATGTAAATT-G-AATTGTTT--AAA-CA---------TA-TTGT--C-ATAGTGCATGT------ACT--GGA------GAATGTA--AAT-A-AAAA-
gi|15 : gatatatggtttctctctgATGA------GGCATTGTTTATTTTTT-G-CGTTTCA-GTTTTTGCAAAATCGATTTAT--ATTTATCTCACAGGCAGTAAAGTATGAATATAT--------------------------------TTTTACATAAGATCTAA--CATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGAAAACATAGAATAAATATTTACACCTACAAAAATT-TATTC--ACTTTTGTAGAGACAATTTTCTTTTTTTATTCTTTTTGATGTA---TT------ACAAAGGTTTtctaccaaaca
gi|16 : cagtctactgatctttagaaactatatgttgagtgtctagacactatacgttgagtgtcaCTATATGT---T--------C--------T----T-T----T----GTGT----GTGTG---TGTGT--GT--GTTTT----T---TT-------CTTTCTT-TAATT-A-TTTAA------GAA---A-GGAAAGGA-A-A----TCA-C---TTAAA-CTTTGACTATA-TGTTTCG-TAA-ATC-ATA---------------------A-AA--AACACCACGTG-G--CA----TCTCATTTGATGACTGAATGAAACTATTTCGATGATATCCTTAAAATAT-GTTA-T--------CA----TTT--G--TAGGAAAAA-AG---G-TTACTT--GTG------T-AT----ATGCTATTC-AG-GCCGTAAATT-GGAATTAC-C--TAGACA---------TA-TTGT--T-TCATTCCATGT------ATT--GGA------GAATTAA--AAT-A-AAa
gi|17 : tgtttATAAAAAAGGTCAA----GATTAT-TT-TT-AG--AT-TTT-GCTATTCTT-A-ACTGTATGT---TGTTG--TTT--------T----T-T----T----TTCT----------------T--TT--AACTTGC--T---T------------------ATT-A-TTTAA------GGC---A-------AA-A-A----ACA-C-ACTCAAAACATTGATCTGC-TGCCTCC-AAA-GTTGACACT---CAC---------T--TA-AT--AGCACCATATT-G--TAAA-ATCCAATA-TATT-C--------ACTTTTCAAATTATATAATTAAAATAA-GACA-G--------GA----TCT--G--TAGAAAATA-A---TG-TTGTTA--AT----------TG-AAAT---------------------------TGTAT--TAG-TC---------TA-TTGT--A-ATATCTCATGT------ATT--GGA------GCATGAA--AAT-A-AAAA-AATACcattaaaaaaaa
gi|18 : gTTCTTTCTAATTAT-TC--A------G-------GAGAAAAA-T-A----ACAAC-ACTCAAAACATTAATAAGC-TATCTCC-AAA-TTGGATACT---AAC---------A--AA-ATGTAGCACCATATG-G--TAAG-ATCCAATGTTATT-C--------TCTATTTAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAATA-AT-CTG-TTTTTTTTATA------T-ATGTAAATACTATAG-AT-GTTGTAAAAT-GAAATTGTAT--TAA-CG---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATACaca
gi|19 : cTTTTT-TAATTAT-TATAA------GA----------AATA-A-A----AT--T-ACTTAAA-CATTGATTAGT-TGTTT---AAA-ATTTATACT---AACAACATATACT--TG--T--ATCACCATATG-T--GAAT-ATTCAATGTAATA-C--------ATCAATGAAATTGTATACTTAAAATAC-GAAAGT--------TA----TCT--G--TAGAAAAG----------TATTT--TCT------T-GTGTAGATGTTATAC-AT-GCTGTCAATT-TGAATTAT-T--TAATCA---------AATTTTT--ATATATTTCATGT------ATT--GGA------GAAT-AA--AAG-A-AGAA-a
gi|2 : TGTATACATGTATGTG-AAAACC-TATTTGG------TGCAT---CTATTTTTT-G-TGTTTCATGTTTTTACAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTAAAAATATATATATATATTTATTTTTTTCTATTATTT---TTTTTTACAGAAGATCTTAGGCATGATTCTTTCA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGAAATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGCTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAATGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GAAATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------AAC---ACGAAAAAAA-A-A----GCA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCGATGTTATT-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAC--TAG-CA---------TA-TTGT--A-ATATCTCATGT------ATT--GGA------GAATGAA--AAT-A-ACAA-AATACt
gi|20 : A------AAC---ATGAAAAAAA-A-AC---ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATC-C--------AATATTCAAATAATATAATTAAAATAA-TATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTG--ATA------T-ATAAAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATCTCATAT------ATT--GGA------GAATAAA--AAT-A-AAAA-ATTA
gi|21 : AAACATTGAAATGC-TGCCTCC-ATA-ATTTATACTTGCAA-------------TATAT--AGCACCATATG-T--GAAG-GTCCAATGTGATG-C--------ATTATT-AAATAGTATAATTAAAGTGT-GTT--T--------TA----ACT--G--AAGAAAAAA-AAACTGGTTA-----AT-------T-GTGTAAATGCTATAC-AT-GTTGTAAATT-GAAATTATTT--AAA-CA---------TA-TTGT--A-ATAGTTGATGTACAGTAATT--GGA------G
gi|22 : aaacagtccttttcaacatatcatgcttTCATAGGCATTAAATT-------------T------------------CATTT---TTGT--ACATAGGTTCCAAC-CTTTATTTTTTAATAGT-----TTCGTTTGCTTTCATG--AGGTACTTATATTAAACATAGAATACCTACTTAAATATGCAGAA------------CTTTTGTAGAGATGAGTTTT-AATTTTACGTTTTTT--TGTAATTCT------ATT-AGATTTCTAAGTACATTTTATTTTATATTTCCA----------CTGTTAAAT
gi|23 : T-TTATTTAG--AT-TCT-GCAATTCTT-A-ACTGT---T---TTTT---TTG--------T----T-TG---T----TTTT----AT-TG---T--GT--TT--AACTTTC--T---T------------------ATT-A-TTTAA------GA-------GAAAAAA-A-A----ACA-C-ACTTAAAACATTGAT-----------------------ATT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCCATGTTATT-C--------ACTAATCAAATAATATAATAAAAATAA-GATA-T--------AA----TCT--G--TAGAAAAAA-AT-CTG-TTAT
gi|25 : AACATT--TTTAC-TAC-----AAGTATATATACT---AAC---------AA-TATAT--AGCACCATATG-T--CAAC-ATCCAATGTTATG-C--------GTTATTTAAATAATATACTTAAACTAT-GATA-TTACAAATGTA----TCT--G--TAGAAAAGA----CTG-TTACT------------T-GTGTAAATGATATAC-AT-GTTGT
gi|26 : aaacAA-ATTTATACT---A-C---------TAATATAT--AGCACCATATG-T--GAAG-ATCCAATTTCATG-C--------ACTATTTAAATGGTATTCTTAAAATAA-GAAA-T--------TA----TC---A--TAGGAAA-A-ATACTG-TT-TCT-----------C-GTGTAAATataaacatattg
gi|27 : ttatatatgaaaataaattactagtggcaataatatttCTATATG-G--GACG-ATTCAATGC-----------------ATTTAAATTATATACTTGAA-TAT-GTTA-T--------TACAATTAT--A--TAGAAAAAA-AT-ATG-TAACT--------------A-GTTAATGCTTTAC-AT-ACTGTAAATT-GAAAT-ATAT--AAA-AA---------CA-ATGT--C-ATGTATCGTGT------ATT--GGA------GAATGAA--AAT-A-AAAC-AACAtgaagtggtatgaac
gi|28 : ATATAATTACCATTATGATA-TG-------TT----TTT--G--TAGAAAAAA-A--ATG-CTACTT--TTG------T-ATGAAAATACTATAC-AT-GTTGTAAATT-GCTATTGTAT---AA-TA---------AA-TTGT--A-ATATTTCATGT------ATT--GGA------TAATGAA--AAT-A-ATAA-ATTACa
gi|29 : actatTAATTAAA-TAC-G----T--------TA----TCT--G--TAGAAAAAATAT-CTA-TTACTT--ACG------T-AGGTCAATACTATAC-AT-GTTGTAAATT-AAAATTG-AT--AAA-CA---------TT-CTGT--A-ATATGTCATGT------ATT--TGA------GAATAAA--AAT-ATAAAACAATACagaaa
gi|3 : AAACC-TATATGG------TGCATT-------TTTT-G-CGTTTCATGTTTTTACAACATCCACCTTTT-ATTAATTTCAAAGGCAGTGAATCAAAAATATATATAT------------------T----------TTTACAGAAGATCTGAGGCATGATTCTTTCA-AGCA----TT--T--GCTTTCATA--AAATACCCAGAGTTAACATAGAATAAATATTTACATCCACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTCC-ATcaaaaaaaa
gi|3 : AAACAAAA--GGTCAA----GAATAT-TT-TTTAG--AT-TTT-GCTACTCTT-A-ACTGTATGC---TGTTGTGTTC--------T----TGT----TGTTGTTTT----GT-TGTTTT-TTT--TT--ATTGTTT--T---TT-------TGTTTTT-TAAAT-T-TCTAAT-----TATTTAA-GAGAAAAA-ATC----ACA-C-ATTCAAAACATTGATTGGCTTGCCTCC-AAA-ACTGACACT---TAC---------T--TA-AT--GACACCATATG-G--TAAA-ATCCAATGTTATT-C--------ACTATTCAAATAATACAATTAAAATAA-GGTA-G--------TA----TCG--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CC---------TA-TTGT--A-ATATATCTTGT------ATT--GGA------GAATGAA--AAT-G-AAAA-AATACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaaacaaaaggtcaagaatattttttagattttgctactcttaactgtatgctgttgtgttcttgttgttgttttgttgtttttttttattgtttttttgttttttaaatttctaattatttaagagaaaaaatcacacattcaaaacattgattggcttgcctccaaaactgacacttacttaatgacaccatatggtaaaatccaatgttattcactattcaaataatacaattaaaataaggtagtatcggtagaaaataatctgttatttatatatgtaaatactatacatgttgttaattgaaattgtattagcctattgtaatatatcttgtattggagaatgaaaatgaaaaaatacaaaa
gi|30 : aaacctatatggtgcattttttgcgtttcatgtttttacaacatccaccttttattaatttcaaaggcagtgaatcaaaaatatatatatttttacagaagatctgaggcatgattctttcaagcatttgctttcataaaatacccagagttaacatagaataaatatttacatccacaaaaatgaattcacttttgtagagacaatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaCAGTAAATCATAAATATAG------------------------------TTTTTTACATAATATCTAA--CATGATTCTTTTA-AGTACGTATG--TTTGCTGTCATG--AAATACTCAAATTAAACATAGAATAAATATTTACATCTAC--AAAT----TTC--CATTGT-TAGAGACGATTTTC-aaaa
gi|33 : GATAATACGA----------TTGT-AAATCTGCAC-GCA-CACAATCGGATAAC---TTACAGA--AAAAGGTTCAA----GTAGATATT-TTTAG--ATATTT-G-TATTTTT-
gi|34 : TATTT-----------T-GTATAAATGCTATTTTAT-ATTGTAAATT-AAAATTGT----TAGACA---------TA-CTGT----------TATGT------ATT--TGA------GAATGAA--AAT-A-ACCA-AATAC
gi|35 : TAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TGGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AA--A-ACAA-AATACaa
gi|36 : AAATG--AAAC-GTAGCTGTAAATT-GGAATTGTTT--AAA-CA---------TA-CTGT--A-TTATTGCATGT------ATT--GAA------GAATGAA--Aaaaa
gi|37 : atgtacactaataTT--ATA------A-GTGCAAATGCTATGC-AT-GCTGTAAATT-AAAATTGTAT--AAA-CA---------ct
gi|38 : attgaaaatatatgattattacataaaactaATT-GAAATTGTAT--AAA-CA---------TA-TTGT--C-ATAATTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAG-ATTAC
gi|39 : atTTTTC-A-----ATGCTTATTGTTGAA---TC------A---AGATTTC--AATGAATTATTTTTGATAATTCCA----------TTGTTAAAaaaaaga
gi|4 : CC-TATATGG------TGCATT--CTATTTTTC-G-CGTTTCATGTTTATGCAACATCGATTTTTT-ATTTATTTCACAGGCAGTAAATCAAAAATATAT-------------------------TT---TATTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATC--AAATACCCAGAGTTAACACAGAATAAAAATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATGTTTATGCTTTATGGTGTA---TT------ATGAAGGTTTCCTAGTGAATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACGGCAACATAATCAGAAGACGAATTATAA--AAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTTTATGT---TGTTGTGTTT--------T----T-TGGGGT----TTTTTTTGGT-TG---T-TGTTGTT--GTTTTTT--TCAGTT-------TTTTTTT-TAACT-T-TCTAATTTTTTAAG---A-G-AAAAAA-A-A----AC----------AACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATACG-G--TAAA-ATCCAATGTTATT-C--------GCTATTCAAATAATATAATTAAAATAA-GATA-G--------TA----TCT--G--TAGAAAGTA-AT-CTG-TTATTT--ATA------T-ATGTAAGTGCTAAAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CC---------TA-TCGT--A-ATATCTCATGT------ACT--GGA------GAATGAA--AAT-A-AAAA-ATTAC
gi|5 : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT-----TTTTTT-G-CGTTACATGTTTTTACAACATCGATTTTTTTATTAATTTCATAGGAAGTAAATTAAATATATATATATATATT-------------TATTTATTTTTTTTACAGAAGATCTAAGGCATGATATTTTAA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGACATAAAATAAATATTTACATCTTCAAAAAGG-AATTC--ACTTTCGTATAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTATTGCATTAGATTTGATAATTCCG----------TTGTTAAATGTAAACAGAAACATAACCAGAAGACGAATTATAAACGAAAAGGGTCAA----GAATTT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTTG--TTTGTTTGTTGT----T-T----T----TTTT----GC-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAACT-T-TCTAA------AAC---ACGAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAA-----------TAT-------------------AAT--------TGAAATAA-GATA-T--------TT----TCT--G--TAGACAATA-AT-CTG-TTATTT--ATA------T-A--TAAATACTATAC-AT-GTTGTTAACT-GAAATTGTAT--TAG-CA---------TA-TTGC--A-ATATCTCATGT------ATT--GGA------GAATAAA--AAA-A-AACA-AACAaaaaaa
gi|6 : aTGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-TGTTTCATGTTTTTACAACATCTATTTTTT-ATTAATTTCATAGGCAGTAAATTT--AATATATATAT------------------T---------TTGTACAGAAGATCTAAGACATGATTCTTTCA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGACATAGAATAAATATTTACATCTACAAAAATT-AATTC--ACTTTTGTAGAGACAATTTTC-------ATGCTTTTTGATGCA---TTATGAAGATGAAGGTTTCCTATTGCATTAAATTTGATAATTCCA----------TTGTTAAATGTATCTAGCAACATAATCAGGAGACGAATTATAAACAAAAAGGTTCAA----GAATAT-GT-TTTAG--AT-TTC-GATAATCTT-A-ACTGTATGT---TG-T---TGG--------T----T-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-GAACT-T-TTTAA------AAC---A-CGAATATA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATT-C--------ACTATTCAAATACTACGATTAAGATGA-GATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTT--GTA------T-ATGTAAATACTATAC-AT-GCTGTTAATT-GAAATTGTAC--TAA-CA---------TA-TTGT--A-ATATATCAaaaa
gi|7 : aTGTATTTGTAAAATCATGTATAGCCAGTATTTATT--TTATTTTTTTGTCGTTT----TTTGTGCAACAACGAGTTTTC-A---ACTTTATAGGCAGTGAATTCTA---------------------------------T---TTTTATACATAAGATCCAA--CATTGTTCTTTCC-AGAA----TTG-TTTGCTTTCATG--AGATACTCCAATTAAATATAGAATACCTACTTAAATCT--GAAAATC-ACTCCCAACTATTTTAGAAATGATTTTT-AATTTAATGCTTTTTGATGAG---TT------AAGCACGTTTATTAGTA-ATAACATATGATAATTTCAAATGTTAAAGTTGTAAAGTGTAAATAGCAATTTGACCGGAAGATTAAAGATAAAAGAAAA----CAACATGAAAGGT-TT-TTTA
gi|7 : tatgtatagttaaatgAAAA-T-A----TCA-C-AT---AAACCTTGATTTGC-TGCCTTCTAAA-GTT---------------------------AT--AACACCATATGTGCCTA----TTCAA-GTTAT-------------TATTTAAATAATATACTTAAAATGT-GTTA-T--------CA----TCG--T--TAGAAAA-A-AT-ATG-TTACCT--GT-----------GTAAATGCTACAC-AT-GTTGTAAATT-GGA--TATATTATAG-CAACCGAGAAGTG-TTGTGAG-ATATATCATATTAC---ATTACAGAAATTATGAATGAACCGAC-A-AAAA-AATActcttattgtgtcattaaagtgaaaatatcacataaaccttgatttgctgccttctaaagttataacaccatatgtgcctattcaagttattatttaaataatatacttaaaatgtgttatcatcgttagaaaaaatatgttacctgtgtaaatgctacacatgttgtaaattggatatattatagcaaccgagaagtgttgtgagatatatcatattacattacagaaattatgaatgaaccgacaaaaaaatat
gi|8 : tatgtatagttaaatgtgtatttgtaaaatcatgtatagccagtatttattttatttttttgtcgttttttgtgcaacaacgagttttcaactttataggcagtgaattctatttttatacataagatccaacattgttctttccagaattgtttgctttcatgagatactccaattaaatatagaatacctacttaaatctgaaaatcactcccaactattttagaaatgatttttaatttaatgctttttgatgagttaagcacgtttattagtaataacatatgataatttcaaatgttaaagttgtaaagtgtaaatagcaatttgaccggaagattaaagataaaagaaaacaacatgaaaggttttttactcttattgtgtcattaaagtgA----TT--TTTG---TCTTGGCAAATATTTTCAGTTG-TAAAAAATAAATACTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTGTTTGATGTA---TT------ATGAAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAAAAGCAACATAATCAGAAGACGAATTATAAATAAAAAGGGTCAA----GAATAG-TT-TTTAA--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTT---GTT--------T----G-T----T------------GT-TG---T-TGT--TT---TTTTGC--T---TTGTTCATTTTTCTTT-TAACT-T-TCTAA------AAC---C-GGAAAAAA-A-AC---ACA-C-ACTCAGAACATTGATTTAC-TGCCCCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATTCAATGCTATC-C--------ACTATTCAGATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAACA-AT-CTG-CTATTT--ATA------T-ATATAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATCTCATGT------ATC--GGA------TAATGAA--AAT-A-AAAA-AGTACt
gi|9 : GAGTTGACATAAAATAAATATTTACATCTAAAAAAATG-AATTC--ATTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTATTACATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATTAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-AGAATTATT-G-ACTGTATGTTGGTGTT---TTTTTTG----T----T-T----T----TTTT----GC-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAACT-T-TCTAA------AAC---ACG--AAAAA-A-A----ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGACAAT---TAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATC-C--------ACTATTCAAATAATATAATCAAAATAA-GATA-T--------TT----TCT--G--AAGAAAATA-GT-CTG-TTATTT--ATA------T-ATATAAATACTATAC-AT-ATTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATATCATGT------TTT--GGA------GAATGAA--AATAA-AAAA-AATACaaaaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): ACTTCCGATCTCATCTTAAAAATCACAAATAAATTGTTTTTTTTATATTTAAAAGATTATGTATATAAATTAAAAAAAAAACAACGTAAACCCAATACATACAAAATGTATAGCATTATACTATATATTTTTTCCCCATTATTAACAAGGAATGATATATATCCTTTATGAATAACAAAGGATATAAAGACA
Unaligned ( gi|31 ): TTGAGTACATAATATATATATATATATATATATGTGTGTGTGTACGTACGTCCGTGTGTCCGATAGACAGATTACTGTATACATGTTTGTGAAAAGTGCATTTAATTATT
Unaligned ( gi|32 ): ATAATATATCAACATGATAGTGAATAACAAAGGATACAAAGACACATTTGTGCAGAACGTTTTTATGAATCATTTTAAACAGTTCGCTATATATATTT
Unaligned ( gi|40 ): TATATATATATATATATATATGTGTGTATATATATACCTCTGTA
Alignments
lowQualScore : 111111 111 11111 88888888888888888888888888888888 11 2222222222 4444444444444444444444444444444444 2222222222222222 222222222222222 1111111
lowQualScore : 8 5 444444 333 5 5 0 5 0 3 4 11111 00000000000000000000000000000000 3 0 99 4 7777 88 55 77 44 2 0 555 888888 0 1 2 3 5555555555 7 7 0 5555 2 2 33 2 2 4 444 444 0000000000000000000000000000000000 5555 2 444 5 33 555 8888 444 88888888 2 888 1 9999999999999999 2 2 8888 4 2 1 1 1 0 333 333333333333333 22 1 22 33 66 66666666 33 1 77777777 3333 22 22 4 1 3 1 222 0000000 1 0 1 1 1 1 333 4 555555555 1 33 1 1 777777 22 444444 22 2 2 2
lowQualScore : . . ...... ... . . . . . . . ..... ................................ . . .. . .... .. .. .. .. . . ... ...... . . . . .......... . . . .... . . .. . . . ... ... .................................. .... . ... . .. ... .... ... ........ . ... . ................ . . .... . . . . . . ... ............... .. . .. .. .. ........ .. . ........ .... .. .. . . . . ... ....... . . . . . . ... . ......... . .. . . ...... .. ...... .. . . .
lowQualScore : 0 7 444444 444 0 0 1 0 1 5 9 88888 77777777777777777777777777777777 3 8 11 0 7777 66 00 22 66 9 6 444 888888 5 0 5 8 8888888888 3 1 5 7777 5 5 77 7 7 5 444 777 1111111111111111111111111111111111 3333 5 444 0 44 666 1111 444 33333333 2 666 3 1111111111111111 0 0 2222 0 0 8 8 7 9 000 444444444444444 44 7 33 00 55 00000000 33 5 11111111 3333 11 11 0 5 1 5 999 1111111 5 4 4 4 5 4 666 3 777777777 5 55 5 9 444444 22 666666 66 0 0 1
consensus : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTANA---A-ATATATATAT--------------------TT------TTTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGTTAACATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TT--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------GAC---A-GAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
Reference ( family-620 ) : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTANA---A-ATATATATAT--------------------TT------TTTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGTTAACATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TT--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------GAC---A-GAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
gi|1 : TGTATACATGTATGTG-AAAAAC-TATATGG------TGCATT--CTATTTTT--G-CGTTTCATGTTTTTGCAACATCGATCTTTT-----------T-GGCAATAAATTATA---A-ATATATGT---------------------------------TTTTACAGAAGATCTAA--CATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACTCAGTGTTAACATAAAATAAATATTTACATCTACAAAAATATAATTC--ACTTTGGTAGAAACAATTTTC-ATTTTTATTATTTTTTATGTT---TT------ATGAAAGTTTCCCAGTGAATTA-ATTTGATAATTCCG----------TTGTTAATTGTACACATCATCATAATCAGAAGACGAATTATAAA--ACAATCGTCAA----GAATTA-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTGTATGC---T-TT---TTG--------T----G-T----T----TTTT----GT-TT---T-TGT--TT--AACTTTC--T---T------------------ATT-A-TTTAA------GA------GAAAAAAA-A----------C-ACTCAAAATATTGATTTGC-TGCCTCC-AAA-ATAGATA----------------------------GCACCATATG-G--CTGA-ATCCAATGTTATT-C--------ACTATTTAAATGATATAATTGAAATTA-GATA-T--------TA----TCT--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTATTAACT-GAAATTGTAT--TAG-CC---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGA
gi|10 : aggatgatatatatcttttatgattaacaaaggatataaagaagaatttgtgcaaaaaatttcttgaatcattcaatattcagatatatatatgtgtgtgtgtgtgtatgtatatatatatgtgtgTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGTAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAATAGCAACATAATCAGAAGACGAATCATGAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTT---GTT--------TGTTAT-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAGCT-T-TCTAA------AAC---ACGAAAAAAACA-ACAACACA-C-ACTCAAAACATTGATTTAC-AGCATCC-AAA-ATTGACACT---TAC---------T--TA-AT--AGTACCATATG-G--TAAA-ATCAAATGTTATC-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAATA-AG-CTG-TTATTT--ATATATATCT-ATATAAATACTATAC-AT-GTTGTTAATTGGAAATT-TAT--TAG-CA---------TA-TTGT--A-ATATCTCCTGT------ATT--GGA------
gi|11 : TTAATACTTTTTGATGTA---GA------ATGAAGGTTTCCCAGTGAATTATATTTGATAATTCCAATGTTGAAA-TTGTTATATGTAAATAGCAACCTAACCAGAAGAC------TAA-CAAAAATG-TCAA----GAATAT-TT-TTGA---AT-TTT-------C-----ACTGTGC----------------------------------------TTTT----AT-TG---TATGT--TT--TTTTTTC--G---TT-------TTCTTTC-TAATTAT-T----------GAA---A-GGAAAAAA-A-A----ACAAT-ACTCAAAACATTGATTGAC-AGCCTCC-AAA-ATTGATACT---TACA--------A--TACAT--AGCATCGTAT--G--TAAATATCCAGTGTTATA-C--------ACTATTCATATAATATAATTTAGAT---GATA-T--------TA----TCT--A--TAGAAAAAA-AT-ATG-TCACTG--AT-------T----TAAAAACTATAC-AT-GTTGTAATTT-GAAATTGTAT--CAA-TA---------TA-ATGTA-A-ATGTTTTATGT------ATT--TGA------GAATG
gi|12 : TAATCAGAAGAC------TAAA---AAAG--TCAA----GAATAC-TT-TTTGG--AT-TTTAGATGTTCTT-TTACTGTGAGT---T----------------------------------TTTT----GT-TG---T-TGT--TT-----------T---TT-------TTTCTCT--AATT-A-TTTAA------GA-------GAAAAAA-C-G----ACA-CCACTCAAAACATTGATTTGC-TGCCTCC-TAA-ATTGATACT---AAC---------AA-TATAT--AGCACCATATG-T--TAAG-ATACAATGTTATA-C--------ACTATTCAAATACTGTAATTAAAATAT-GACA-T--------TA----TCT--G--TAGTAAAAA-AT-CTG-TTACGT--ATG------T-ATGTTAATACTGCAC-GT-ATTGTAAATT-GAAATTGCAT--AAA-CA---------TA-GTGT--A-GTATTTCATTT------ATT--GGA------GAATGAA--A---A-AAAA-ATTAC
gi|13 : AGCCAC-TAATCAGAAGAC---TTA------AAAAAAGTAAA----GACTAT-TT-TTTTTTTAT-TTC-GCTATTCTTTA-ACTGCAAGT---T--------T--------G----T-T----T----TTTT----GT-T------TGT--TT--CTTTTTTAGT---TT-------TGTCTTT-CAAAT-TATTTAA------GA------GAAAAAAA-A-A--------C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-CTTGATACT---AAC---------AA-TATAT--AGAACTATATA-G--TAAT-ACCCAATGTTATA-C--------GCTATTCAAATAATATAATTAAAATAT-GATA-T--------TA----TCTCAGTTTAGTAAAAA-AT-CTG-TTACTT--ATA------TAATGTAAATGCTATAC-AT-GCTGTAAATT-GAAATTGTAT--AAA-CA---------TA-TTGT--A-aaaaaa
gi|14 : aaT---TCT--------T----T-T----T----TTGT----GT-T----T-TGT--TTCTATTTT--------TT-------TATATTT-TAATT-A-TTCAA------GA------GAAATCAA-A-T----GCA-C--TTCAA--CGTTGCTTTGC-TGCCTCC-AAA-ATTTATACT---AACAACA-----T-----AT--AGCACCATATG-T--GAAA-AGTCTATGTTATA-T--------ATTATTCAAATGATATACTTAAACTAT-GATA-T--------TA----TCT--G--TAGAAAAAA-CT-CT----------------------TGTAAATGCTATAC-AT-GATGTAAATT-G-AATTGTTT--AAA-CA---------TA-TTGT--C-ATAGTGCATGT------ACT--GGA------GAATGTA--AAT-A-AAAA-
gi|15 : gatatatggtttctctctgATGA------GGCATTGTTTATTTTTT-G-CGTTTCA-GTTTTTGCAAAATCGATTTAT--ATTTATCTCACAGGCAGTAAAGTATG---A-ATATAT-----------------------------------TTTTACATAAGATCTAA--CATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGAAAACATAGAATAAATATTTACACCTACAAAAATT-TATTC--ACTTTTGTAGAGACAATTTTCTTTTTTTATTCTTTTTGATGTA---TT------ACAAAGGTTTtctaccaaaca
gi|16 : cagtctactgatctttagaaactatatgttgagtgtctagacactatacgttgagtgtcaCTATATGT---T--------C--------T----T-T----T----GTGT----GTGTG---TGTGT--GT--GTTTT----T---TT-------CTTTCTT-TAATT-A-TTTAA------GAA---A-GGAAAGGA-A-A----TCA-C---TTAAA-CTTTGACTATA-TGTTTCG-TAA-ATC-ATA---------------------A-AA--AACACCACGTG-G--CA----TCTCATTTGATGACTGAATGAAACTATTTCGATGATATCCTTAAAATAT-GTTA-T--------CA----TTT--G--TAGGAAAAA-AG---G-TTACTT--GTG------T-AT----ATGCTATTC-AG-GCCGTAAATT-GGAATTAC-C--TAGACA---------TA-TTGT--T-TCATTCCATGT------ATT--GGA------GAATTAA--AAT-A-AAa
gi|17 : tgtttATAAAAAAGGTCAA----GATTAT-TT-TT-AG--AT-TTT-GCTATTCTT-A-ACTGTATGT---TGTTG--TTT--------T----T-T----T----TTCT----------------T--TT--AACTTGC--T---T------------------ATT-A-TTTAA------GGC---A-------AA-A-A----ACA-C-ACTCAAAACATTGATCTGC-TGCCTCC-AAA-GTTGACACT---CAC---------T--TA-AT--AGCACCATATT-G--TAAA-ATCCAATA-TATT-C--------ACTTTTCAAATTATATAATTAAAATAA-GACA-G--------GA----TCT--G--TAGAAAATA-A---TG-TTGTTA--AT----------TG-AAAT---------------------------TGTAT--TAG-TC---------TA-TTGT--A-ATATCTCATGT------ATT--GGA------GCATGAA--AAT-A-AAAA-AATACcattaaaaaaaa
gi|18 : gTTCTTTCTAATTAT-TC--A------G-------GAGAAAAA-T-A----ACAAC-ACTCAAAACATTAATAAGC-TATCTCC-AAA-TTGGATACT---AAC---------A--AA-ATGTAGCACCATATG-G--TAAG-ATCCAATGTTATT-C--------TCTATTTAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAATA-AT-CTG-TTTTTTTTATA------T-ATGTAAATACTATAG-AT-GTTGTAAAAT-GAAATTGTAT--TAA-CG---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATACaca
gi|19 : cTTTTT-TAATTAT-TATAA------GA----------AATA-A-A----AT--T-ACTTAAA-CATTGATTAGT-TGTTT---AAA-ATTTATACT---AACAACATATACT--TG--T--ATCACCATATG-T--GAAT-ATTCAATGTAATA-C--------ATCAATGAAATTGTATACTTAAAATAC-GAAAGT--------TA----TCT--G--TAGAAAAG----------TATTT--TCT------T-GTGTAGATGTTATAC-AT-GCTGTCAATT-TGAATTAT-T--TAATCA---------AATTTTT--ATATATTTCATGT------ATT--GGA------GAAT-AA--AAG-A-AGAA-a
gi|2 : TGTATACATGTATGTG-AAAACC-TATTTGG------TGCAT---CTATTTTTT-G-TGTTTCATGTTTTTACAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTAAA---A-ATATATATATATATTTATTTTTTTCTATTATT------TTTTTTTACAGAAGATCTTAGGCATGATTCTTTCA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGAAATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGCTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAATGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GAAATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-------TT--TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------AAC---ACGAAAAAAA-A-A----GCA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCGATGTTATT-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAC--TAG-CA---------TA-TTGT--A-ATATCTCATGT------ATT--GGA------GAATGAA--AAT-A-ACAA-AATACt
gi|20 : A------AAC---ATGAAAAAAA-A-AC---ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATC-C--------AATATTCAAATAATATAATTAAAATAA-TATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTG--ATA------T-ATAAAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATCTCATAT------ATT--GGA------GAATAAA--AAT-A-AAAA-ATTA
gi|21 : AAACATTGAAATGC-TGCCTCC-ATA-ATTTATACTTGCAA-------------TATAT--AGCACCATATG-T--GAAG-GTCCAATGTGATG-C--------ATTATT-AAATAGTATAATTAAAGTGT-GTT--T--------TA----ACT--G--AAGAAAAAA-AAACTGGTTA-----AT-------T-GTGTAAATGCTATAC-AT-GTTGTAAATT-GAAATTATTT--AAA-CA---------TA-TTGT--A-ATAGTTGATGTACAGTAATT--GGA------G
gi|22 : aaacagtccttttcaacatatcatgcttTCATAGGCATTAAATTTCA-------------------------------------------TTTTTGTACATAGGTTCCAAC-CTTTATTTTTTAATAGT-----TTCGTTTGCTTTCATG--AGGTACTTATATTAAACATAGAATACCTACTTAAATATGCAGAA------------CTTTTGTAGAGATGAGTTTT-AATTTTACGTTTTTT--TGTAATTCT------ATT-AGATTTCTAAGTACATTTTATTTTATATTTCCA----------CTGTTAAAT
gi|23 : T-TTATTTAG--AT-TCT-GCAATTCTT-A-ACTGT---T---TTTT---TTG--------T----T-TG---T----TTTT----AT-TG---T--GT--TT--AACTTTC--T---T------------------ATT-A-TTTAA------GA-------GAAAAAA-A-A----ACA-C-ACTTAAAACATTGAT-----------------------ATT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCCATGTTATT-C--------ACTAATCAAATAATATAATAAAAATAA-GATA-T--------AA----TCT--G--TAGAAAAAA-AT-CTG-TTAT
gi|25 : AACATT--TTTAC-TAC-----AAGTATATATACT---AAC---------AA-TATAT--AGCACCATATG-T--CAAC-ATCCAATGTTATG-C--------GTTATTTAAATAATATACTTAAACTAT-GATA-TTACAAATGTA----TCT--G--TAGAAAAGA----CTG-TTACT------------T-GTGTAAATGATATAC-AT-GTTGT
gi|26 : aaacAA-ATTTATACT---A-C---------TAATATAT--AGCACCATATG-T--GAAG-ATCCAATTTCATG-C--------ACTATTTAAATGGTATTCTTAAAATAA-GAAA-T--------TA----TC---A--TAGGAAA-A-ATACTG-TT-TCT-----------C-GTGTAAATataaacatattg
gi|27 : ttatatatgaaaataaattactagtggcaataatatttCTATATG-G--GACG-ATTCAATGC-----------------ATTTAAATTATATACTTGAA-TAT-GTTA-T--------TACAATTAT--A--TAGAAAAAA-AT-ATG-TAACT--------------A-GTTAATGCTTTAC-AT-ACTGTAAATT-GAAAT-ATAT--AAA-AA---------CA-ATGT--C-ATGTATCGTGT------ATT--GGA------GAATGAA--AAT-A-AAAC-AACAtgaagtggtatgaac
gi|28 : ATATAATTACCATTATGATA-TG-------TT----TTT--G--TAGAAAAAA-A--ATG-CTACTT--TTG------T-ATGAAAATACTATAC-AT-GTTGTAAATT-GCTATTGTAT---AA-TA---------AA-TTGT--A-ATATTTCATGT------ATT--GGA------TAATGAA--AAT-A-ATAA-ATTACa
gi|29 : actatTAATTAAA-TAC-G----T--------TA----TCT--G--TAGAAAAAATAT-CTA-TTACTT--ACG------T-AGGTCAATACTATAC-AT-GTTGTAAATT-AAAATTG-AT--AAA-CA---------TT-CTGT--A-ATATGTCATGT------ATT--TGA------GAATAAA--AAT-ATAAAACAATACagaaa
gi|3 : AAACC-TATATGG------TGCATT-------TTTT-G-CGTTTCATGTTTTTACAACATCCACCTTTT-ATTAATTTCAAAGGCAGTGAATCAAA---A-ATATATATAT--------------------TT------TT-----ACAGAAGATCTGAGGCATGATTCTTTCA-AGCA----TT--T--GCTTTCATA--AAATACCCAGAGTTAACATAGAATAAATATTTACATCCACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTCC-ATcaaaaaaaa
gi|3 : AAACAAAA--GGTCAA----GAATAT-TT-TTTAG--AT-TTT-GCTACTCTT-A-ACTGTATGC---TGTTGTGTTC--------T----TGT----TGTTGTTTT----GT-TGTTTT-TTT--TT--ATTGTTT--T---TT-------TGTTTTT-TAAAT-T-TCTAAT-----TATTTAA-GAGAAAAA-ATC----ACA-C-ATTCAAAACATTGATTGGCTTGCCTCC-AAA-ACTGACACT---TAC---------T--TA-AT--GACACCATATG-G--TAAA-ATCCAATGTTATT-C--------ACTATTCAAATAATACAATTAAAATAA-GGTA-G--------TA----TCG--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CC---------TA-TTGT--A-ATATATCTTGT------ATT--GGA------GAATGAA--AAT-G-AAAA-AATACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaaacaaaaggtcaagaatattttttagattttgctactcttaactgtatgctgttgtgttcttgttgttgttttgttgtttttttttattgtttttttgttttttaaatttctaattatttaagagaaaaaatcacacattcaaaacattgattggcttgcctccaaaactgacacttacttaatgacaccatatggtaaaatccaatgttattcactattcaaataatacaattaaaataaggtagtatcggtagaaaataatctgttatttatatatgtaaatactatacatgttgttaattgaaattgtattagcctattgtaatatatcttgtattggagaatgaaaatgaaaaaatacaaaa
gi|30 : aaacctatatggtgcattttttgcgtttcatgtttttacaacatccaccttttattaatttcaaaggcagtgaatcaaaaatatatatatttttacagaagatctgaggcatgattctttcaagcatttgctttcataaaatacccagagttaacatagaataaatatttacatccacaaaaatgaattcacttttgtagagacaatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaCAGTAAATCATA---A-ATATAG---------------------------------TTTTTTACATAATATCTAA--CATGATTCTTTTA-AGTACGTATG--TTTGCTGTCATG--AAATACTCAAATTAAACATAGAATAAATATTTACATCTAC--AAAT----TTC--CATTGT-TAGAGACGATTTTC-aaaa
gi|33 : GATAATACGA----------TTGT-AAATCTGCAC-GCA-CACAATCGGATAAC---TTACAGA--AAAAGGTTCAA----GTAGATATT-TTTAG--ATATTT-G-TATTTTT-
gi|34 : TATTT-----------T-GTATAAATGCTATTTTAT-ATTGTAAATT-AAAATTGT----TAGACA---------TA-CTGT----------TATGT------ATT--TGA------GAATGAA--AAT-A-ACCA-AATAC
gi|35 : TAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TGGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AA--A-ACAA-AATACaa
gi|36 : AAATG--AAAC-GTAGCTGTAAATT-GGAATTGTTT--AAA-CA---------TA-CTGT--A-TTATTGCATGT------ATT--GAA------GAATGAA--Aaaaa
gi|37 : atgtacactaataTT--ATA------A-GTGCAAATGCTATGC-AT-GCTGTAAATT-AAAATTGTAT--AAA-CA---------ct
gi|38 : attgaaaatatatgattattacataaaactaATT-GAAATTGTAT--AAA-CA---------TA-TTGT--C-ATAATTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAG-ATTAC
gi|39 : atTTTTC-A-----ATGCTTATTGTTGAA---TC------A---AGATTTC--AATGAATTATTTTTGATAATTCCA----------TTGTTAAAaaaaaga
gi|4 : CC-TATATGG------TGCATT--CTATTTTTC-G-CGTTTCATGTTTATGCAACATCGATTTTTT-ATTTATTTCACAGGCAGTAAATCAAA---A-ATATAT-------------------------T------TTATTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATC--AAATACCCAGAGTTAACACAGAATAAAAATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATGTTTATGCTTTATGGTGTA---TT------ATGAAGGTTTCCTAGTGAATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACGGCAACATAATCAGAAGACGAATTATAA--AAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTTTATGT---TGTTGTGTTT--------T----T-TGGGGT----TTTTTTTGGT-TG---T-TGTTGTT--GTTTTTT--TCAGTT-------TTTTTTT-TAACT-T-TCTAATTTTTTAAG---A-G-AAAAAA-A-A----AC----------AACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATACG-G--TAAA-ATCCAATGTTATT-C--------GCTATTCAAATAATATAATTAAAATAA-GATA-G--------TA----TCT--G--TAGAAAGTA-AT-CTG-TTATTT--ATA------T-ATGTAAGTGCTAAAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CC---------TA-TCGT--A-ATATCTCATGT------ACT--GGA------GAATGAA--AAT-A-AAAA-ATTAC
gi|5 : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT-----TTTTTT-G-CGTTACATGTTTTTACAACATCGATTTTTTTATTAATTTCATAGGAAGTAAATTAAATATATATATATATAT--------------------TTATTTATTTTTTTTACAGAAGATCTAAGGCATGATATTTTAA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGACATAAAATAAATATTTACATCTTCAAAAAGG-AATTC--ACTTTCGTATAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTATTGCATTAGATTTGATAATTCCG----------TTGTTAAATGTAAACAGAAACATAACCAGAAGACGAATTATAAACGAAAAGGGTCAA----GAATTT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTTG--TTTGTTTGTTGT----T-T----T----TTTT----GC-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAACT-T-TCTAA------AAC---ACGAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAA-----------TAT-------------------AAT--------TGAAATAA-GATA-T--------TT----TCT--G--TAGACAATA-AT-CTG-TTATTT--ATA------T-A--TAAATACTATAC-AT-GTTGTTAACT-GAAATTGTAT--TAG-CA---------TA-TTGC--A-ATATCTCATGT------ATT--GGA------GAATAAA--AAA-A-AACA-AACAaaaaaa
gi|6 : aTGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-TGTTTCATGTTTTTACAACATCTATTTTTT-ATTAATTTCATAGGCAGTAAATTT-----A-ATATATATAT--------------------TT------TGT----ACAGAAGATCTAAGACATGATTCTTTCA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGACATAGAATAAATATTTACATCTACAAAAATT-AATTC--ACTTTTGTAGAGACAATTTTC-------ATGCTTTTTGATGCA---TTATGAAGATGAAGGTTTCCTATTGCATTAAATTTGATAATTCCA----------TTGTTAAATGTATCTAGCAACATAATCAGGAGACGAATTATAAACAAAAAGGTTCAA----GAATAT-GT-TTTAG--AT-TTC-GATAATCTT-A-ACTGTATGT---TG-T---TGG--------T----T-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-GAACT-T-TTTAA------AAC---A-CGAATATA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATT-C--------ACTATTCAAATACTACGATTAAGATGA-GATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTT--GTA------T-ATGTAAATACTATAC-AT-GCTGTTAATT-GAAATTGTAC--TAA-CA---------TA-TTGT--A-ATATATCAaaaa
gi|7 : aTGTATTTGTAAAATCATGTATAGCCAGTATTTATT--TTATTTTTTTGTCGTTT----TTTGTGCAACAACGAGTTTTC-A---ACTTTATAGGCAGTGAATTCTA-------------------------------------------TTTTTATACATAAGATCCAA--CATTGTTCTTTCC-AGAA----TTG-TTTGCTTTCATG--AGATACTCCAATTAAATATAGAATACCTACTTAAATCT--GAAAATC-ACTCCCAACTATTTTAGAAATGATTTTT-AATTTAATGCTTTTTGATGAG---TT------AAGCACGTTTATTAGTA-ATAACATATGATAATTTCAAATGTTAAAGTTGTAAAGTGTAAATAGCAATTTGACCGGAAGATTAAAGATAAAAGAAAA----CAACATGAAAGGT-TT-TTTA
gi|7 : tatgtatagttaaatgAAAA-T-A----TCA-C-AT---AAACCTTGATTTGC-TGCCTTCTAAA-GTT---------------------------AT--AACACCATATGTGCCTA----TTCAA-GTTAT-------------TATTTAAATAATATACTTAAAATGT-GTTA-T--------CA----TCG--T--TAGAAAA-A-AT-ATG-TTACCT--GT-----------GTAAATGCTACAC-AT-GTTGTAAATT-GGA--TATATTATAG-CAACCGAGAAGTG-TTGTGAG-ATATATCATATTAC---ATTACAGAAATTATGAATGAACCGAC-A-AAAA-AATActcttattgtgtcattaaagtgaaaatatcacataaaccttgatttgctgccttctaaagttataacaccatatgtgcctattcaagttattatttaaataatatacttaaaatgtgttatcatcgttagaaaaaatatgttacctgtgtaaatgctacacatgttgtaaattggatatattatagcaaccgagaagtgttgtgagatatatcatattacattacagaaattatgaatgaaccgacaaaaaaatat
gi|8 : tatgtatagttaaatgtgtatttgtaaaatcatgtatagccagtatttattttatttttttgtcgttttttgtgcaacaacgagttttcaactttataggcagtgaattctatttttatacataagatccaacattgttctttccagaattgtttgctttcatgagatactccaattaaatatagaatacctacttaaatctgaaaatcactcccaactattttagaaatgatttttaatttaatgctttttgatgagttaagcacgtttattagtaataacatatgataatttcaaatgttaaagttgtaaagtgtaaatagcaatttgaccggaagattaaagataaaagaaaacaacatgaaaggttttttactcttattgtgtcattaaagtgA----TT--TTTG---TCTTGGCAAATATTTTCAGTTG-TAAAAAATAAATACTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTGTTTGATGTA---TT------ATGAAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAAAAGCAACATAATCAGAAGACGAATTATAAATAAAAAGGGTCAA----GAATAG-TT-TTTAA--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTT---GTT--------T----G-T----T------------GT-TG---T-TGT--TT---TTTTGC--T---TTGTTCATTTTTCTTT-TAACT-T-TCTAA------AAC---C-GGAAAAAA-A-AC---ACA-C-ACTCAGAACATTGATTTAC-TGCCCCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATTCAATGCTATC-C--------ACTATTCAGATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAACA-AT-CTG-CTATTT--ATA------T-ATATAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATCTCATGT------ATC--GGA------TAATGAA--AAT-A-AAAA-AGTACt
gi|9 : GAGTTGACATAAAATAAATATTTACATCTAAAAAAATG-AATTC--ATTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTATTACATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATTAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-AGAATTATT-G-ACTGTATGTTGGTGTT---TTTTTTG----T----T-T----T----TTTT----GC-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAACT-T-TCTAA------AAC---ACG--AAAAA-A-A----ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGACAAT---TAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATC-C--------ACTATTCAAATAATATAATCAAAATAA-GATA-T--------TT----TCT--G--AAGAAAATA-GT-CTG-TTATTT--ATA------T-ATATAAATACTATAC-AT-ATTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATATCATGT------TTT--GGA------GAATGAA--AATAA-AAAA-AATACaaaaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): ACTTCCGATCTCATCTTAAAAATCACAAATAAATTGTTTTTTTTATATTTAAAAGATTATGTATATAAATTAAAAAAAAAACAACGTAAACCCAATACATACAAAATGTATAGCATTATACTATATATTTTTTCCCCATTATTAACAAGGAATGATATATATCCTTTATGAATAACAAAGGATATAAAGACA
Unaligned ( gi|31 ): TTGAGTACATAATATATATATATATATATATATGTGTGTGTGTACGTACGTCCGTGTGTCCGATAGACAGATTACTGTATACATGTTTGTGAAAAGTGCATTTAATTATT
Unaligned ( gi|32 ): ATAATATATCAACATGATAGTGAATAACAAAGGATACAAAGACACATTTGTGCAGAACGTTTTTATGAATCATTTTAAACAGTTCGCTATATATATTT
Unaligned ( gi|40 ): TATATATATATATATATATATGTGTGTATATATATACCTCTGTA
Alignments
lowQualScore : 111111 111 11111 88888888888888888888888888888888 11 2222222222 4444444444444444444444444444444444 2222222222222222 222222222222222 1111111
lowQualScore : 8 5 444444 333 5 5 0 5 0 3 4 11111 00000000000000000000000000000000 3 0 99 4 7777 88 55 77 44 2 0 555 888888 0 1 2 3 5555555555 7 7 0 5555 2 2 33 2 2 4 444 444 0000000000000000000000000000000000 5555 2 444 5 33 555 8888 444 88888888 2 888 1 9999999999999999 2 2 8888 4 2 1 1 1 0 333 333333333333333 22 1 22 33 66 66666666 33 1 77777777 3333 22 22 4 1 3 1 222 0000000 1 0 1 1 1 1 333 4 555555555 1 33 1 1 777777 22 444444 22 2 2 2
lowQualScore : . . ...... ... . . . . . . . ..... ................................ . . .. . .... .. .. .. .. . . ... ...... . . . . .......... . . . .... . . .. . . . ... ... .................................. .... . ... . .. ... .... ... ........ . ... . ................ . . .... . . . . . . ... ............... .. . .. .. .. ........ .. . ........ .... .. .. . . . . ... ....... . . . . . . ... . ......... . .. . . ...... .. ...... .. . . .
lowQualScore : 0 7 444444 444 0 0 1 0 1 5 9 88888 77777777777777777777777777777777 3 8 11 0 7777 66 00 22 66 9 6 444 888888 5 0 5 8 8888888888 3 1 5 7777 5 5 77 7 7 5 444 777 1111111111111111111111111111111111 3333 5 444 0 44 666 1111 444 33333333 2 666 3 1111111111111111 0 0 2222 0 0 8 8 7 9 000 444444444444444 44 7 33 00 55 00000000 33 5 11111111 3333 11 11 0 5 1 5 999 1111111 5 4 4 4 5 4 666 3 777777777 5 55 5 9 444444 22 666666 66 0 0 1
consensus : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTANA---A-ATATATATAT--------------------TT------TTTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGTTAACATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TT--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------GAC---A-GAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
Reference ( family-620 ) : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTANA---A-ATATATATAT--------------------TT------TTTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGTTAACATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TT--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------GAC---A-GAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
gi|1 : TGTATACATGTATGTG-AAAAAC-TATATGG------TGCATT--CTATTTTT--G-CGTTTCATGTTTTTGCAACATCGATCTTTT-----------T-GGCAATAAATTATA---A-ATATATGT---------------------------------TTTTACAGAAGATCTAA--CATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACTCAGTGTTAACATAAAATAAATATTTACATCTACAAAAATATAATTC--ACTTTGGTAGAAACAATTTTC-ATTTTTATTATTTTTTATGTT---TT------ATGAAAGTTTCCCAGTGAATTA-ATTTGATAATTCCG----------TTGTTAATTGTACACATCATCATAATCAGAAGACGAATTATAAA--ACAATCGTCAA----GAATTA-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTGTATGC---T-TT---TTG--------T----G-T----T----TTTT----GT-TT---T-TGT--TT--AACTTTC--T---T------------------ATT-A-TTTAA------GA------GAAAAAAA-A----------C-ACTCAAAATATTGATTTGC-TGCCTCC-AAA-ATAGATA----------------------------GCACCATATG-G--CTGA-ATCCAATGTTATT-C--------ACTATTTAAATGATATAATTGAAATTA-GATA-T--------TA----TCT--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTATTAACT-GAAATTGTAT--TAG-CC---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGA
gi|10 : aggatgatatatatcttttatgattaacaaaggatataaagaagaatttgtgcaaaaaatttcttgaatcattcaatattcagatatatatatgtgtgtgtgtgtgtatgtatatatatatgtgtgTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGTAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAATAGCAACATAATCAGAAGACGAATCATGAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTT---GTT--------TGTTAT-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAGCT-T-TCTAA------AAC---ACGAAAAAAACA-ACAACACA-C-ACTCAAAACATTGATTTAC-AGCATCC-AAA-ATTGACACT---TAC---------T--TA-AT--AGTACCATATG-G--TAAA-ATCAAATGTTATC-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAATA-AG-CTG-TTATTT--ATATATATCT-ATATAAATACTATAC-AT-GTTGTTAATTGGAAATT-TAT--TAG-CA---------TA-TTGT--A-ATATCTCCTGT------ATT--GGA------
gi|11 : TTAATACTTTTTGATGTA---GA------ATGAAGGTTTCCCAGTGAATTATATTTGATAATTCCAATGTTGAAA-TTGTTATATGTAAATAGCAACCTAACCAGAAGAC------TAA-CAAAAATG-TCAA----GAATAT-TT-TTGA---AT-TTT-------C-----ACTGTGC----------------------------------------TTTT----AT-TG---TATGT--TT--TTTTTTC--G---TT-------TTCTTTC-TAATTAT-T----------GAA---A-GGAAAAAA-A-A----ACAAT-ACTCAAAACATTGATTGAC-AGCCTCC-AAA-ATTGATACT---TACA--------A--TACAT--AGCATCGTAT--G--TAAATATCCAGTGTTATA-C--------ACTATTCATATAATATAATTTAGAT---GATA-T--------TA----TCT--A--TAGAAAAAA-AT-ATG-TCACTG--AT-------T----TAAAAACTATAC-AT-GTTGTAATTT-GAAATTGTAT--CAA-TA---------TA-ATGTA-A-ATGTTTTATGT------ATT--TGA------GAATG
gi|12 : TAATCAGAAGAC------TAAA---AAAG--TCAA----GAATAC-TT-TTTGG--AT-TTTAGATGTTCTT-TTACTGTGAGT---T----------------------------------TTTT----GT-TG---T-TGT--TT-----------T---TT-------TTTCTCT--AATT-A-TTTAA------GA-------GAAAAAA-C-G----ACA-CCACTCAAAACATTGATTTGC-TGCCTCC-TAA-ATTGATACT---AAC---------AA-TATAT--AGCACCATATG-T--TAAG-ATACAATGTTATA-C--------ACTATTCAAATACTGTAATTAAAATAT-GACA-T--------TA----TCT--G--TAGTAAAAA-AT-CTG-TTACGT--ATG------T-ATGTTAATACTGCAC-GT-ATTGTAAATT-GAAATTGCAT--AAA-CA---------TA-GTGT--A-GTATTTCATTT------ATT--GGA------GAATGAA--A---A-AAAA-ATTAC
gi|13 : AGCCAC-TAATCAGAAGAC---TTA------AAAAAAGTAAA----GACTAT-TT-TTTTTTTAT-TTC-GCTATTCTTTA-ACTGCAAGT---T--------T--------G----T-T----T----TTTT----GT-T------TGT--TT--CTTTTTTAGT---TT-------TGTCTTT-CAAAT-TATTTAA------GA------GAAAAAAA-A-A--------C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-CTTGATACT---AAC---------AA-TATAT--AGAACTATATA-G--TAAT-ACCCAATGTTATA-C--------GCTATTCAAATAATATAATTAAAATAT-GATA-T--------TA----TCTCAGTTTAGTAAAAA-AT-CTG-TTACTT--ATA------TAATGTAAATGCTATAC-AT-GCTGTAAATT-GAAATTGTAT--AAA-CA---------TA-TTGT--A-aaaaaa
gi|14 : aaT---TCT--------T----T-T----T----TTGT----GT-T----T-TGT--TTCTATTTT--------TT-------TATATTT-TAATT-A-TTCAA------GA------GAAATCAA-A-T----GCA-C--TTCAA--CGTTGCTTTGC-TGCCTCC-AAA-ATTTATACT---AACAACA-----T-----AT--AGCACCATATG-T--GAAA-AGTCTATGTTATA-T--------ATTATTCAAATGATATACTTAAACTAT-GATA-T--------TA----TCT--G--TAGAAAAAA-CT-CT----------------------TGTAAATGCTATAC-AT-GATGTAAATT-G-AATTGTTT--AAA-CA---------TA-TTGT--C-ATAGTGCATGT------ACT--GGA------GAATGTA--AAT-A-AAAA-
gi|15 : gatatatggtttctctctgATGA------GGCATTGTTTATTTTTT-G-CGTTTCA-GTTTTTGCAAAATCGATTTAT--ATTTATCTCACAGGCAGTAAAGTATG---A-ATATAT-----------------------------------TTTTACATAAGATCTAA--CATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGAAAACATAGAATAAATATTTACACCTACAAAAATT-TATTC--ACTTTTGTAGAGACAATTTTCTTTTTTTATTCTTTTTGATGTA---TT------ACAAAGGTTTtctaccaaaca
gi|16 : cagtctactgatctttagaaactatatgttgagtgtctagacactatacgttgagtgtcaCTATATGT---T--------C--------T----T-T----T----GTGT----GTGTG---TGTGT--GT--GTTTT----T---TT-------CTTTCTT-TAATT-A-TTTAA------GAA---A-GGAAAGGA-A-A----TCA-C---TTAAA-CTTTGACTATA-TGTTTCG-TAA-ATC-ATA---------------------A-AA--AACACCACGTG-G--CA----TCTCATTTGATGACTGAATGAAACTATTTCGATGATATCCTTAAAATAT-GTTA-T--------CA----TTT--G--TAGGAAAAA-AG---G-TTACTT--GTG------T-AT----ATGCTATTC-AG-GCCGTAAATT-GGAATTAC-C--TAGACA---------TA-TTGT--T-TCATTCCATGT------ATT--GGA------GAATTAA--AAT-A-AAa
gi|17 : tgtttATAAAAAAGGTCAA----GATTAT-TT-TT-AG--AT-TTT-GCTATTCTT-A-ACTGTATGT---TGTTG--TTT--------T----T-T----T----TTCT----------------T--TT--AACTTGC--T---T------------------ATT-A-TTTAA------GGC---A-------AA-A-A----ACA-C-ACTCAAAACATTGATCTGC-TGCCTCC-AAA-GTTGACACT---CAC---------T--TA-AT--AGCACCATATT-G--TAAA-ATCCAATA-TATT-C--------ACTTTTCAAATTATATAATTAAAATAA-GACA-G--------GA----TCT--G--TAGAAAATA-A---TG-TTGTTA--AT----------TG-AAAT---------------------------TGTAT--TAG-TC---------TA-TTGT--A-ATATCTCATGT------ATT--GGA------GCATGAA--AAT-A-AAAA-AATACcattaaaaaaaa
gi|18 : gTTCTTTCTAATTAT-TC--A------G-------GAGAAAAA-T-A----ACAAC-ACTCAAAACATTAATAAGC-TATCTCC-AAA-TTGGATACT---AAC---------A--AA-ATGTAGCACCATATG-G--TAAG-ATCCAATGTTATT-C--------TCTATTTAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAATA-AT-CTG-TTTTTTTTATA------T-ATGTAAATACTATAG-AT-GTTGTAAAAT-GAAATTGTAT--TAA-CG---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATACaca
gi|19 : cTTTTT-TAATTAT-TATAA------GA----------AATA-A-A----AT--T-ACTTAAA-CATTGATTAGT-TGTTT---AAA-ATTTATACT---AACAACATATACT--TG--T--ATCACCATATG-T--GAAT-ATTCAATGTAATA-C--------ATCAATGAAATTGTATACTTAAAATAC-GAAAGT--------TA----TCT--G--TAGAAAAG----------TATTT--TCT------T-GTGTAGATGTTATAC-AT-GCTGTCAATT-TGAATTAT-T--TAATCA---------AATTTTT--ATATATTTCATGT------ATT--GGA------GAAT-AA--AAG-A-AGAA-a
gi|2 : TGTATACATGTATGTG-AAAACC-TATTTGG------TGCAT---CTATTTTTT-G-TGTTTCATGTTTTTACAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTAAA---A-ATATATATATATATTTATTTTTTTCTATTATT------TTTTTTTACAGAAGATCTTAGGCATGATTCTTTCA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGAAATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGCTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAATGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GAAATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-------TT--TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------AAC---ACGAAAAAAA-A-A----GCA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCGATGTTATT-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAC--TAG-CA---------TA-TTGT--A-ATATCTCATGT------ATT--GGA------GAATGAA--AAT-A-ACAA-AATACt
gi|20 : A------AAC---ATGAAAAAAA-A-AC---ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATC-C--------AATATTCAAATAATATAATTAAAATAA-TATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTG--ATA------T-ATAAAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATCTCATAT------ATT--GGA------GAATAAA--AAT-A-AAAA-ATTA
gi|21 : AAACATTGAAATGC-TGCCTCC-ATA-ATTTATACTTGCAA-------------TATAT--AGCACCATATG-T--GAAG-GTCCAATGTGATG-C--------ATTATT-AAATAGTATAATTAAAGTGT-GTT--T--------TA----ACT--G--AAGAAAAAA-AAACTGGTTA-----AT-------T-GTGTAAATGCTATAC-AT-GTTGTAAATT-GAAATTATTT--AAA-CA---------TA-TTGT--A-ATAGTTGATGTACAGTAATT--GGA------G
gi|22 : aaacagtccttttcaacatatcatgcttTCATAGGCATTAAATTTCA-------------------------------------------TTTTTGTACATAGGTTCCAAC-CTTTATTTTTTAATAGT-----TTCGTTTGCTTTCATG--AGGTACTTATATTAAACATAGAATACCTACTTAAATATGCAGAA------------CTTTTGTAGAGATGAGTTTT-AATTTTACGTTTTTT--TGTAATTCT------ATT-AGATTTCTAAGTACATTTTATTTTATATTTCCA----------CTGTTAAAT
gi|23 : T-TTATTTAG--AT-TCT-GCAATTCTT-A-ACTGT---T---TTTT---TTG--------T----T-TG---T----TTTT----AT-TG---T--GT--TT--AACTTTC--T---T------------------ATT-A-TTTAA------GA-------GAAAAAA-A-A----ACA-C-ACTTAAAACATTGAT-----------------------ATT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCCATGTTATT-C--------ACTAATCAAATAATATAATAAAAATAA-GATA-T--------AA----TCT--G--TAGAAAAAA-AT-CTG-TTAT
gi|25 : AACATT--TTTAC-TAC-----AAGTATATATACT---AAC---------AA-TATAT--AGCACCATATG-T--CAAC-ATCCAATGTTATG-C--------GTTATTTAAATAATATACTTAAACTAT-GATA-TTACAAATGTA----TCT--G--TAGAAAAGA----CTG-TTACT------------T-GTGTAAATGATATAC-AT-GTTGT
gi|26 : aaacAA-ATTTATACT---A-C---------TAATATAT--AGCACCATATG-T--GAAG-ATCCAATTTCATG-C--------ACTATTTAAATGGTATTCTTAAAATAA-GAAA-T--------TA----TC---A--TAGGAAA-A-ATACTG-TT-TCT-----------C-GTGTAAATataaacatattg
gi|27 : ttatatatgaaaataaattactagtggcaataatatttCTATATG-G--GACG-ATTCAATGC-----------------ATTTAAATTATATACTTGAA-TAT-GTTA-T--------TACAATTAT--A--TAGAAAAAA-AT-ATG-TAACT--------------A-GTTAATGCTTTAC-AT-ACTGTAAATT-GAAAT-ATAT--AAA-AA---------CA-ATGT--C-ATGTATCGTGT------ATT--GGA------GAATGAA--AAT-A-AAAC-AACAtgaagtggtatgaac
gi|28 : ATATAATTACCATTATGATA-TG-------TT----TTT--G--TAGAAAAAA-A--ATG-CTACTT--TTG------T-ATGAAAATACTATAC-AT-GTTGTAAATT-GCTATTGTAT---AA-TA---------AA-TTGT--A-ATATTTCATGT------ATT--GGA------TAATGAA--AAT-A-ATAA-ATTACa
gi|29 : actatTAATTAAA-TAC-G----T--------TA----TCT--G--TAGAAAAAATAT-CTA-TTACTT--ACG------T-AGGTCAATACTATAC-AT-GTTGTAAATT-AAAATTG-AT--AAA-CA---------TT-CTGT--A-ATATGTCATGT------ATT--TGA------GAATAAA--AAT-ATAAAACAATACagaaa
gi|3 : AAACC-TATATGG------TGCATT-------TTTT-G-CGTTTCATGTTTTTACAACATCCACCTTTT-ATTAATTTCAAAGGCAGTGAATCAAA---A-ATATATATAT--------------------TT------TT-----ACAGAAGATCTGAGGCATGATTCTTTCA-AGCA----TT--T--GCTTTCATA--AAATACCCAGAGTTAACATAGAATAAATATTTACATCCACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTCC-ATcaaaaaaaa
gi|3 : AAACAAAA--GGTCAA----GAATAT-TT-TTTAG--AT-TTT-GCTACTCTT-A-ACTGTATGC---TGTTGTGTTC--------T----TGT----TGTTGTTTT----GT-TGTTTT-TTT--TT--ATTGTTT--T---TT-------TGTTTTT-TAAAT-T-TCTAAT-----TATTTAA-GAGAAAAA-ATC----ACA-C-ATTCAAAACATTGATTGGCTTGCCTCC-AAA-ACTGACACT---TAC---------T--TA-AT--GACACCATATG-G--TAAA-ATCCAATGTTATT-C--------ACTATTCAAATAATACAATTAAAATAA-GGTA-G--------TA----TCG--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CC---------TA-TTGT--A-ATATATCTTGT------ATT--GGA------GAATGAA--AAT-G-AAAA-AATACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaaacaaaaggtcaagaatattttttagattttgctactcttaactgtatgctgttgtgttcttgttgttgttttgttgtttttttttattgtttttttgttttttaaatttctaattatttaagagaaaaaatcacacattcaaaacattgattggcttgcctccaaaactgacacttacttaatgacaccatatggtaaaatccaatgttattcactattcaaataatacaattaaaataaggtagtatcggtagaaaataatctgttatttatatatgtaaatactatacatgttgttaattgaaattgtattagcctattgtaatatatcttgtattggagaatgaaaatgaaaaaatacaaaa
gi|30 : aaacctatatggtgcattttttgcgtttcatgtttttacaacatccaccttttattaatttcaaaggcagtgaatcaaaaatatatatatttttacagaagatctgaggcatgattctttcaagcatttgctttcataaaatacccagagttaacatagaataaatatttacatccacaaaaatgaattcacttttgtagagacaatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaCAGTAAATCATA---A-ATATAG---------------------------------TTTTTTACATAATATCTAA--CATGATTCTTTTA-AGTACGTATG--TTTGCTGTCATG--AAATACTCAAATTAAACATAGAATAAATATTTACATCTAC--AAAT----TTC--CATTGT-TAGAGACGATTTTC-aaaa
gi|33 : GATAATACGA----------TTGT-AAATCTGCAC-GCA-CACAATCGGATAAC---TTACAGA--AAAAGGTTCAA----GTAGATATT-TTTAG--ATATTT-G-TATTTTT-
gi|34 : TATTT-----------T-GTATAAATGCTATTTTAT-ATTGTAAATT-AAAATTGT----TAGACA---------TA-CTGT----------TATGT------ATT--TGA------GAATGAA--AAT-A-ACCA-AATAC
gi|35 : TAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TGGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AA--A-ACAA-AATACaa
gi|36 : AAATG--AAAC-GTAGCTGTAAATT-GGAATTGTTT--AAA-CA---------TA-CTGT--A-TTATTGCATGT------ATT--GAA------GAATGAA--Aaaaa
gi|37 : atgtacactaataTT--ATA------A-GTGCAAATGCTATGC-AT-GCTGTAAATT-AAAATTGTAT--AAA-CA---------ct
gi|38 : attgaaaatatatgattattacataaaactaATT-GAAATTGTAT--AAA-CA---------TA-TTGT--C-ATAATTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAG-ATTAC
gi|39 : atTTTTC-A-----ATGCTTATTGTTGAA---TC------A---AGATTTC--AATGAATTATTTTTGATAATTCCA----------TTGTTAAAaaaaaga
gi|4 : CC-TATATGG------TGCATT--CTATTTTTC-G-CGTTTCATGTTTATGCAACATCGATTTTTT-ATTTATTTCACAGGCAGTAAATCAAA---A-ATATAT-------------------------T------TTATTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATC--AAATACCCAGAGTTAACACAGAATAAAAATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATGTTTATGCTTTATGGTGTA---TT------ATGAAGGTTTCCTAGTGAATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACGGCAACATAATCAGAAGACGAATTATAA--AAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTTTATGT---TGTTGTGTTT--------T----T-TGGGGT----TTTTTTTGGT-TG---T-TGTTGTT--GTTTTTT--TCAGTT-------TTTTTTT-TAACT-T-TCTAATTTTTTAAG---A-G-AAAAAA-A-A----AC----------AACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATACG-G--TAAA-ATCCAATGTTATT-C--------GCTATTCAAATAATATAATTAAAATAA-GATA-G--------TA----TCT--G--TAGAAAGTA-AT-CTG-TTATTT--ATA------T-ATGTAAGTGCTAAAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CC---------TA-TCGT--A-ATATCTCATGT------ACT--GGA------GAATGAA--AAT-A-AAAA-ATTAC
gi|5 : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT-----TTTTTT-G-CGTTACATGTTTTTACAACATCGATTTTTTTATTAATTTCATAGGAAGTAAATTAAATATATATATATATAT--------------------TTATTTATTTTTTTTACAGAAGATCTAAGGCATGATATTTTAA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGACATAAAATAAATATTTACATCTTCAAAAAGG-AATTC--ACTTTCGTATAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTATTGCATTAGATTTGATAATTCCG----------TTGTTAAATGTAAACAGAAACATAACCAGAAGACGAATTATAAACGAAAAGGGTCAA----GAATTT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTTG--TTTGTTTGTTGT----T-T----T----TTTT----GC-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAACT-T-TCTAA------AAC---ACGAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAA-----------TAT-------------------AAT--------TGAAATAA-GATA-T--------TT----TCT--G--TAGACAATA-AT-CTG-TTATTT--ATA------T-A--TAAATACTATAC-AT-GTTGTTAACT-GAAATTGTAT--TAG-CA---------TA-TTGC--A-ATATCTCATGT------ATT--GGA------GAATAAA--AAA-A-AACA-AACAaaaaaa
gi|6 : aTGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-TGTTTCATGTTTTTACAACATCTATTTTTT-ATTAATTTCATAGGCAGTAAATTT-----A-ATATATATAT--------------------TT------TGT----ACAGAAGATCTAAGACATGATTCTTTCA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGACATAGAATAAATATTTACATCTACAAAAATT-AATTC--ACTTTTGTAGAGACAATTTTC-------ATGCTTTTTGATGCA---TTATGAAGATGAAGGTTTCCTATTGCATTAAATTTGATAATTCCA----------TTGTTAAATGTATCTAGCAACATAATCAGGAGACGAATTATAAACAAAAAGGTTCAA----GAATAT-GT-TTTAG--AT-TTC-GATAATCTT-A-ACTGTATGT---TG-T---TGG--------T----T-T----T----TTTT----GT-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-GAACT-T-TTTAA------AAC---A-CGAATATA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATT-C--------ACTATTCAAATACTACGATTAAGATGA-GATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTT--GTA------T-ATGTAAATACTATAC-AT-GCTGTTAATT-GAAATTGTAC--TAA-CA---------TA-TTGT--A-ATATATCAaaaa
gi|7 : aTGTATTTGTAAAATCATGTATAGCCAGTATTTATT--TTATTTTTTTGTCGTTT----TTTGTGCAACAACGAGTTTTC-A---ACTTTATAGGCAGTGAATTCTA-------------------------------------------TTTTTATACATAAGATCCAA--CATTGTTCTTTCC-AGAA----TTG-TTTGCTTTCATG--AGATACTCCAATTAAATATAGAATACCTACTTAAATCT--GAAAATC-ACTCCCAACTATTTTAGAAATGATTTTT-AATTTAATGCTTTTTGATGAG---TT------AAGCACGTTTATTAGTA-ATAACATATGATAATTTCAAATGTTAAAGTTGTAAAGTGTAAATAGCAATTTGACCGGAAGATTAAAGATAAAAGAAAA----CAACATGAAAGGT-TT-TTTA
gi|7 : tatgtatagttaaatgAAAA-T-A----TCA-C-AT---AAACCTTGATTTGC-TGCCTTCTAAA-GTT---------------------------AT--AACACCATATGTGCCTA----TTCAA-GTTAT-------------TATTTAAATAATATACTTAAAATGT-GTTA-T--------CA----TCG--T--TAGAAAA-A-AT-ATG-TTACCT--GT-----------GTAAATGCTACAC-AT-GTTGTAAATT-GGA--TATATTATAG-CAACCGAGAAGTG-TTGTGAG-ATATATCATATTAC---ATTACAGAAATTATGAATGAACCGAC-A-AAAA-AATActcttattgtgtcattaaagtgaaaatatcacataaaccttgatttgctgccttctaaagttataacaccatatgtgcctattcaagttattatttaaataatatacttaaaatgtgttatcatcgttagaaaaaatatgttacctgtgtaaatgctacacatgttgtaaattggatatattatagcaaccgagaagtgttgtgagatatatcatattacattacagaaattatgaatgaaccgacaaaaaaatat
gi|8 : tatgtatagttaaatgtgtatttgtaaaatcatgtatagccagtatttattttatttttttgtcgttttttgtgcaacaacgagttttcaactttataggcagtgaattctatttttatacataagatccaacattgttctttccagaattgtttgctttcatgagatactccaattaaatatagaatacctacttaaatctgaaaatcactcccaactattttagaaatgatttttaatttaatgctttttgatgagttaagcacgtttattagtaataacatatgataatttcaaatgttaaagttgtaaagtgtaaatagcaatttgaccggaagattaaagataaaagaaaacaacatgaaaggttttttactcttattgtgtcattaaagtgA----TT--TTTG---TCTTGGCAAATATTTTCAGTTG-TAAAAAATAAATACTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTGTTTGATGTA---TT------ATGAAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAAAAGCAACATAATCAGAAGACGAATTATAAATAAAAAGGGTCAA----GAATAG-TT-TTTAA--AT-TTT-GATATTCTT-G-ACTGTATGT---TGTT---GTT--------T----G-T----T------------GT-TG---T-TGT--TT---TTTTGC--T---TTGTTCATTTTTCTTT-TAACT-T-TCTAA------AAC---C-GGAAAAAA-A-AC---ACA-C-ACTCAGAACATTGATTTAC-TGCCCCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATTCAATGCTATC-C--------ACTATTCAGATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAACA-AT-CTG-CTATTT--ATA------T-ATATAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATCTCATGT------ATC--GGA------TAATGAA--AAT-A-AAAA-AGTACt
gi|9 : GAGTTGACATAAAATAAATATTTACATCTAAAAAAATG-AATTC--ATTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTATTACATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATTAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-AGAATTATT-G-ACTGTATGTTGGTGTT---TTTTTTG----T----T-T----T----TTTT----GC-TG---T-TGT--TC--ATTTTCC--T---TT-------TTTCTTT-TAACT-T-TCTAA------AAC---ACG--AAAAA-A-A----ACA-C-ACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGACAAT---TAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATC-C--------ACTATTCAAATAATATAATCAAAATAA-GATA-T--------TT----TCT--G--AAGAAAATA-GT-CTG-TTATTT--ATA------T-ATATAAATACTATAC-AT-ATTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATATCATGT------TTT--GGA------GAATGAA--AATAA-AAAA-AATACaaaaaa
blockSeqs : T A CCAGTA GTT T T T T T TATAT ATATATATTTATTTTTTTCTATTATT T GG T CGTA CG GC T CA T ATT ATGAAG T C G AATGTTAAAG G C CATG A A TT A A A TT TGG GTTGTTTGTTTGTTGTTTT TTTG G TTT A TG CTA TTAG CAG TGTTCATT C AT C TTTTTTAAGAG C T CAAC A C T T T TGC AACATATACTTG GT T CC AT GA TGAATGAA AT G TACAAATG CAAT CA TT T T A G TTA ATATATC A T A T G TAT A ACCGAGAAG T GA T C ACAGTA AC AATTAT CC A T C
blockSeqs : . . . C . . . A A A ATATTTATTTAT T GG . . G . G . . . . G A T ATGTTGAAA G C . . . . . . A TA . GTTGTGTTCTTGTTGTTG . . . G . A CC . T . TA T TTATTTAAGA . . C A . . . . . TAATAT . . . A C . A . G . . . A . A . A G . . . A . T T . . A . T TAC . . . . . .
blockSeqs : . . . C . . . A C A ATATTT T GG . . . . G . . . . T C G . G T . . . . . . C G . GTTGTGTTTTTTGGGGT . . . . . T TC . T . AT T AACACGA . . C . . . . . . AATAC . . . G A . T . . . . . A . . . A A . . . A . C A . . . . T . . . . . . .
blockSeqs : . . . C . . . T A A ATATTT A GG . . . . G . . . . G C T . G C . . . . . . C A . GTTGTTTGTTATTT . . . . . C GC . T . AT T AACACGA . . . . . . . . . AATAT . . . T A . T . . . . . A . . . A G . . . A . A . . . . . T . . . . . . .
blockSeqs : . . T . . . A T A T T GA . . . . G . . . . A A T . G C . . . . . . A A . GTTTTTTTTGTTTT . . . . . G CC . T . T T AACATGA . . . . . . . . . AATAT . . . A A . T . . . . . A . . . A A . . . A . A . . . . . T . . . . . . .
blockSeqs : . . . . . . A A A . T C . . . . T . . . . G A G . T C . . . . . . C A . GTTGTTTTTTT . . . . . A TC . T . A T AACACGA . . . . . . . . . AACAT . . . A A . T . . . . . A . . . G T . . . A . A . . . . . C . . . . . . .
blockSeqs : . . . . . . A A . T . . . . . C . . . . T C G . G C . . . . . . C A . TTTTTGTTTGT . . . . . A TT . T . A C GAAAGG . . . . . . . . . AATAT . . . G T . A . . . . . T . . . A A . . . A . T . . . . . T . . . . . . .
blockSeqs : T . . . . . . . . G . . . . T C A . G A . . . . . . C A . GTTTTTTTTT . . . . . A TT . T . A A GAAAGG . . . . . . . . . TTA . . . T T . A . . . . . T . . . T A . . . C . T . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . G . . . . G C C . . T . . . . . . A G . GTTGTTTGTT . . . . . A CC . T . A C AACACG . . . . . . . . . TTA . . . A A . C . . . . . G . . . A G . . . T . T . . . . . C . . . . . . .
blockSeqs : . . . . . . . . T C G . . C . . . . . . A A . GTTGGTTTT . . . . . G CC . T . T T AACCGG . . . . . . . . . AAA . . . A T . A . . . . . T . . . A G . . . T . T . . . . . C . . . . . . .
blockSeqs : . . . . . T . G . . . . . . . . . A G . TGTTT . . . . . A GC . T . A C AACACG . . . . . . . . . TTA . . . G C . A . . . . . T . . . A A . . . A . T . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . G G . CTTTT . . . . . A CC . T . T C GAGA . . . . . . . . . TTA . . . A G . T . . . . . A . . . T A . . . A . T . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . T . T C GAGA . . . . . . . . . TAT . . . C T . A . . . . . A . . . A A . . . A . A . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T T GGCA . . . . . . . . . TTA . . . G G . T . . . . . G . . . A A . . . A . A . . . . . G . . . . . . .
blockSeqs : . . . . . . . . . . . . T C GAG . . . . . . . . . TTA . . . G G . A . . . . . A . . . A A . . . T . A . . . . . A . . . . . . .
blockSeqs : . T C GGA . . . . . . . . . TTA . . . A T . T . . . . . A . . . A A . . . A . T . . . . . T . . . . . . .
blockSeqs : . T . GAG . . . . . . . . . TTA . . . A T . C . . . . . A . . . A A . . . T . T . . . . . T . . . . . . .
blockSeqs : GA . . . . . . . . . TTA . . . A T . A . . . . . T . . . G . . . . A . T . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . TTA . . . A C . A . . . . . T . . . G . . . . A . A . . . . . C . . . . . .
blockSeqs : . . . . TTA . . . A C . A . . . . . T . . . A . . . . T . A . . . . . C . . . .
blockSeqs : . . . . A . . . . . . A . . . . . T . . . A . . . . T . A . . . . . A . . .
blockSeqs : . . . . . . . . . T . . . . . C . . . . . . . . T . T . . . . . A . . .
blockSeqs : . . . . . A . . . . . T . . . . . . . . A . T . . . . . C . . .
blockSeqs : A . . . . . . . . . . . . . . T . T . . . . . A . . .
blockSeqs : . . . . . . . . . . . . . . . T . T . . . . . .
blockSeqs : . . . . . . . T . . . . .
blockSeqs : . . . . . .
blockSeqCons : ATATTT************************** GG G* GTTGTTTTTTT*********************** T******* GACAGA********** TTA************
originalCons : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTANA---A-ATATATATAT--------------------TT------TTTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGTTAACATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGT---TGTT---TTT--------T----T-T----T----TTTT----GT-TG---T-TGT--TT--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAA------GAC---A-GAAAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
finalCons : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTANA---A-ATATATATATTT--------------------------TTTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGTTAACATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGT---TGTTGTTTTTTT-----------------------TTTT----GT-TG---T-TGT--TT--ATTTTCC--T---TT-------TTTCTTT-TAATT-T-TCTAAGACAGA----------AAAAAA-A-A----ACA-C-ACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AACTTA------------AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): ACTTCCGATCTCATCTTAAAAATCACAAATAAATTGTTTTTTTTATATTTAAAAGATTATGTATATAAATTAAAAAAAAAACAACGTAAACCCAATACATACAAAATGTATAGCATTATACTATATATTTTTTCCCCATTATTAACAAGGAATGATATATATCCTTTATGAATAACAAAGGATATAAAGACA
Unaligned ( gi|31 ): TTGAGTACATAATATATATATATATATATATATGTGTGTGTGTACGTACGTCCGTGTGTCCGATAGACAGATTACTGTATACATGTTTGTGAAAAGTGCATTTAATTATT
Unaligned ( gi|32 ): ATAATATATCAACATGATAGTGAATAACAAAGGATACAAAGACACATTTGTGCAGAACGTTTTTATGAATCATTTTAAACAGTTCGCTATATATATTT
Unaligned ( gi|40 ): TATATATATATATATATATATGTGTGTATATATATACCTCTGTA
Alignments
lowQualScore : 111111 111 11111 88888888888888888888888888888888 11 2222222222 222222222222222222222 1111111 2222222222222222 222222222222222 1111111
lowQualScore : 8 5 444444 333 5 5 0 5 0 3 4 11111 00000000000000000000000000000000 3 0 99 4 7777 88 55 77 44 2 0 555 888888 0 1 2 3 5555555555 7 7 0 5555 2 2 33 2 2 4 444 4 0 666666666666666666666 33 0000000 66666 2 2 777777 666 7 9999999999 2 888 1 9999999999999999 2 2 8888 6 1 1 1 0 333 333333333333333 22 1 22 33 66 66666666 33 1 77777777 3333 22 22 4 1 3 1 222 0000000 1 0 1 1 1 1 333 4 555555555 1 33 1 1 777777 22 444444 22 2 2 2
lowQualScore : . . ...... ... . . . . . . . ..... ................................ . . .. . .... .. .. .. .. . . ... ...... . . . . .......... . . . .... . . .. . . . ... . . ..................... .. ....... ..... . . ...... ... . .......... . ... . ................ . . .... . . . . . ... ............... .. . .. .. .. ........ .. . ........ .... .. .. . . . . ... ....... . . . . . . ... . ......... . .. . . ...... .. ...... .. . . .
lowQualScore : 0 7 444444 444 0 0 1 0 1 5 9 88888 77777777777777777777777777777777 3 8 11 0 7777 66 00 22 66 9 6 444 888888 5 0 5 8 8888888888 3 1 5 7777 5 5 77 7 7 5 444 3 9 555555555555555555555 44 6666666 22222 5 5 444444 222 1 6666666666 2 666 3 1111111111111111 0 0 2222 0 8 8 7 9 000 444444444444444 44 7 33 00 55 00000000 33 5 11111111 3333 11 11 0 5 1 5 999 1111111 5 4 4 4 5 4 666 3 777777777 5 55 5 9 444444 22 666666 66 0 0 1
consensus : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTANA---A-ATATATATAT--------------------TT------TTTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGTTAACATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGTTGTTGT-----------TT--------T--TTT-------TT-----T-TGT-TG---T-TGTTT--ATTTTCCTT--T-------TTTCTTT-TAATT-T-TCTAA------GAC---A-GAAAAAAA-A-A----ACA-CACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
Reference ( family-620 ) : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-CGTTTCATGTTTTTGCAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTANA---A-ATATATATAT--------------------TT------TTTTTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGTTAACATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTANTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GNTATTCTT-A-ACTGTATGTTGTTGT-----------TT--------T--TTT-------TT-----T-TGT-TG---T-TGTTT--ATTTTCCTT--T-------TTTCTTT-TAATT-T-TCTAA------GAC---A-GAAAAAAA-A-A----ACA-CACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATN-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAANA-AT-CTG-TTATTT--ATA------T-ATGTAAATGCTATAC-AT-GTTGTNAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATAC
gi|1 : TGTATACATGTATGTG-AAAAAC-TATATGG------TGCATT--CTATTTTT--G-CGTTTCATGTTTTTGCAACATCGATCTTTT-----------T-GGCAATAAATTATA---A-ATATATGT---------------------------------TTTTACAGAAGATCTAA--CATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACTCAGTGTTAACATAAAATAAATATTTACATCTACAAAAATATAATTC--ACTTTGGTAGAAACAATTTTC-ATTTTTATTATTTTTTATGTT---TT------ATGAAAGTTTCCCAGTGAATTA-ATTTGATAATTCCG----------TTGTTAATTGTACACATCATCATAATCAGAAGACGAATTATAAA--ACAATCGTCAA----GAATTA-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTGTATGCT-TT-T-----------TG--------T--GTT-------TT-----T-TGT-TT---T-TGTTT--AACTTTCTT--------------------ATT-A-TTTAA------GA------GAAAAAAA-A----------CACTCAAAATATTGATTTGC-TGCCTCC-AAA-ATAGATA----------------------------GCACCATATG-G--CTGA-ATCCAATGTTATT-C--------ACTATTTAAATGATATAATTGAAATTA-GATA-T--------TA----TCT--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTATTAACT-GAAATTGTAT--TAG-CC---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGA
gi|10 : aggatgatatatatcttttatgattaacaaaggatataaagaagaatttgtgcaaaaaatttcttgaatcattcaatattcagatatatatatgtgtgtgtgtgtgtatgtatatatatatgtgtgTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGTAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAATAGCAACATAATCAGAAGACGAATCATGAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGTTGTTGT-----------TTG-------TTATTT-------TT-----T-TGT-TG---T-TGTTC--ATTTTCCTT--T-------TTTCTTT-TAGCT-T-TCTAA------AAC---ACGAAAAAAACA-ACAACACA-CACTCAAAACATTGATTTAC-AGCATCC-AAA-ATTGACACT---TAC---------T--TA-AT--AGTACCATATG-G--TAAA-ATCAAATGTTATC-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAATA-AG-CTG-TTATTT--ATATATATCT-ATATAAATACTATAC-AT-GTTGTTAATTGGAAATT-TAT--TAG-CA---------TA-TTGT--A-ATATCTCCTGT------ATT--GGA------
gi|11 : TTAATACTTTTTGATGTA---GA------ATGAAGGTTTCCCAGTGAATTATATTTGATAATTCCAATGTTGAAA-TTGTTATATGTAAATAGCAACCTAACCAGAAGAC------TAA-CAAAAATG-TCAA----GAATAT-TT-TTGA---AT-TTT-------C-----ACTGTGC------------------------------------------TT-----T-TAT-TG---TATGTTT--TTTTTTCGT--T-------TTCTTTC-TAATTAT-T----------GAA---A-GGAAAAAA-A-A----ACAATACTCAAAACATTGATTGAC-AGCCTCC-AAA-ATTGATACT---TACA--------A--TACAT--AGCATCGTAT--G--TAAATATCCAGTGTTATA-C--------ACTATTCATATAATATAATTTAGAT---GATA-T--------TA----TCT--A--TAGAAAAAA-AT-ATG-TCACTG--AT-------T----TAAAAACTATAC-AT-GTTGTAATTT-GAAATTGTAT--CAA-TA---------TA-ATGTA-A-ATGTTTTATGT------ATT--TGA------GAATG
gi|12 : TAATCAGAAGAC------TAAA---AAAG--TCAA----GAATAC-TT-TTTGG--AT-TTTAGATGTTCTT-TTACTGTGAGTT-----------------------------TTT-------TG-----T-TGT-TG---T-T-------------TT--T-------TTTTCTC-TAATT-A-TTTAA------GA-------GAAAAAA-C-G----ACACCACTCAAAACATTGATTTGC-TGCCTCC-TAA-ATTGATACT---AACA--------A--TATAT--AGCACCATATG-T--TAAG-ATACAATGTTATA-C--------ACTATTCAAATACTGTAATTAAAATAT-GACA-T--------TA----TCT--G--TAGTAAAAA-AT-CTG-TTACGT--ATG------T-ATGTTAATACTGCAC-GT-ATTGTAAATT-GAAATTGCAT--AAA-CA---------TA-GTGT--A-GTATTTCATTT------ATT--GGA------GAATGAA--A---A-AAAA-ATTAC
gi|13 : AGCCAC-TAATCAGAAGAC---TTA------AAAAAAGTAAA----GACTAT-TT-TTTTTTTAT-TTC-GCTATTCTTTA-ACTGCAAGTT--TGT-----------TT--------T--TTT-------GT-----T-TGT-T--------TCT--TTTTTAGTT--T-------TGTCTTT-CAAAT-TATTTAA------GA------GAAAAAAA-A-A--------CACTCAAAACATTGATTTGC-TGCCTCC-AAA-CTTGATACT---AAC---------AA-TATAT--AGAACTATATA-G--TAAT-ACCCAATGTTATA-C--------GCTATTCAAATAATATAATTAAAATAT-GATA-T--------TA----TCTCAGTTTAGTAAAAA-AT-CTG-TTACTT--ATA------TAATGTAAATGCTATAC-AT-GCTGTAAATT-GAAATTGTAT--AAA-CA---------TA-TTGT--A-aaaaaa
gi|14 : aaTGT-----------TC--------T--TTT-------TT-----TGTGT-T----T-TGTTTCTATTTT---T--T-------TATATTT-TAATT-A-TTCAA------GA------GAAATCAA-A-T----GCA-C-TTCAA--CGTTGCTTTGC-TGCCTCC-AAA-ATTTATACT---AACAACA-----T-----AT--AGCACCATATG-T--GAAA-AGTCTATGTTATA-T--------ATTATTCAAATGATATACTTAAACTAT-GATA-T--------TA----TCT--G--TAGAAAAAA-CT-CT----------------------TGTAAATGCTATAC-AT-GATGTAAATT-G-AATTGTTT--AAA-CA---------TA-TTGT--C-ATAGTGCATGT------ACT--GGA------GAATGTA--AAT-A-AAAA-
gi|15 : gatatatggtttctctcATGA------GGCATTGTTTATTTTTT-G-CGTTTCA-GTTTTTGCAAAATCGATTTAT--ATTTATCTCACAGGCAGTAAAGTATG---A-ATATAT-----------------------------------TTTTACATAAGATCTAA--CATGATTCTTTCA-AGCA----TT--TTTGCTTTCATG--AAATACCCAGAGAAAACATAGAATAAATATTTACACCTACAAAAATT-TATTC--ACTTTTGTAGAGACAATTTTCTTTTTTTATTCTTTTTGATGTA---TT------ACAAAGGTTTtctaccaaaca
gi|16 : cagtctactgatctttagaaactatatgttgagtgtctagacactatacgttgagtgtcaTGT-----------TC--------T--TTT-------GT-----G-TGTGTG---TGTGTGT--GTTTT--TT--T-------CTTTCTT-TAATT-A-TTTAA------GAA---A-GGAAAGGA-A-A----TCA-C--TTAAA-CTTTGACTATA-TGTTTCG-TAA-ATC-ATA---------------------A-AA--AACACCACGTG-G--CA----TCTCATTTGATGACTGAATGAAACTATTTCGATGATATCCTTAAAATAT-GTTA-T--------CA----TTT--G--TAGGAAAAA-AG---G-TTACTT--GTG------T-AT----ATGCTATTC-AG-GCCGTAAATT-GGAATTAC-C--TAGACA---------TA-TTGT--T-TCATTCCATGT------ATT--GGA------GAATTAA--AAT-A-AAa
gi|17 : tgtttctataATAAAAAAGGTCAA----GATTAT-TT-TT-AG--AT-TTT-GCTATTCTT-A-ACTGTATGTTGTTGT-----------TT--------T--TTT-------TT-----C-T------------TTT--AACTTGCTT--------------------ATT-A-TTTAA------GGC---A-------AA-A-A----ACA-CACTCAAAACATTGATCTGC-TGCCTCC-AAA-GTTGACACT---CAC---------T--TA-AT--AGCACCATATT-G--TAAA-ATCCAATA-TATT-C--------ACTTTTCAAATTATATAATTAAAATAA-GACA-G--------GA----TCT--G--TAGAAAATA-A---TG-TTGTTA--AT----------TG-AAAT---------------------------TGTAT--TAG-TC---------TA-TTGT--A-ATATCTCATGT------ATT--GGA------GCATGAA--AAT-A-AAAA-AATACcattaaaaaaaa
gi|18 : gTTCTTTCTAATTAT-TC--A------G-------GAGAAAAA-T-A----ACAACACTCAAAACATTAATAAGC-TATCTCC-AAA-TTGGATACT---AAC---------A--AA-ATGTAGCACCATATG-G--TAAG-ATCCAATGTTATT-C--------TCTATTTAAATAATATAATTAAAATAA-GATA-T--------TA----TCT--G--TAGAAAATA-AT-CTG-TTTTTTTTATA------T-ATGTAAATACTATAG-AT-GTTGTAAAAT-GAAATTGTAT--TAA-CG---------TA-TTGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAA-AATACaca
gi|19 : cTTTTT-TAATTAT-TATAA------GA----------AATA-A-A----AT--TACTTAAA-CATTGATTAGT-TGTTT---AAA-ATTTATACT---AACAACATATACT--TG--T--ATCACCATATG-T--GAAT-ATTCAATGTAATA-C--------ATCAATGAAATTGTATACTTAAAATAC-GAAAGT--------TA----TCT--G--TAGAAAAG----------TATTT--TCT------T-GTGTAGATGTTATAC-AT-GCTGTCAATT-TGAATTAT-T--TAATCA---------AATTTTT--ATATATTTCATGT------ATT--GGA------GAAT-AA--AAG-A-AGAA-a
gi|2 : TGTATACATGTATGTG-AAAACC-TATTTGG------TGCAT---CTATTTTTT-G-TGTTTCATGTTTTTACAACATCGATTTTTT-ATTAATTTCATAGGCAGTAAATTAAA---A-ATATATATATATATTTATTTTTTTCTATTATT------TTTTTTTACAGAAGATCTTAGGCATGATTCTTTCA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGAAATAGAATAAATATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGCTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATCAGAAGACGAATTATAAACAAAATGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GAAATTCTT-A-ACTGTATGTTGTT-------------TT--------T--TTTT------TT-----T-TGT-TG---T-TGTTC--ATTTTCCTT--T-------TTTCTTT-TAATT-T-TCTAA------AAC---ACGAAAAAAA-A-A----GCA-CACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCGATGTTATT-C--------ACTATTCAAATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAC--TAG-CA---------TA-TTGT--A-ATATCTCATGT------ATT--GGA------GAATGAA--AAT-A-ACAA-AATACt
gi|20 : A------AAC---ATGAAAAAAA-A-AC---ACA-CACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATC-C--------AATATTCAAATAATATAATTAAAATAA-TATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTG--ATA------T-ATAAAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATCTCATAT------ATT--GGA------GAATAAA--AAT-A-AAAA-ATTA
gi|21 : AAACATTGAAATGC-TGCCTCC-ATA-ATTTATACTTGCAA-------------TATAT--AGCACCATATG-T--GAAG-GTCCAATGTGATG-C--------ATTATT-AAATAGTATAATTAAAGTGT-GTT--T--------TA----ACT--G--AAGAAAAAA-AAACTGGTTA-----AT-------T-GTGTAAATGCTATAC-AT-GTTGTAAATT-GAAATTATTT--AAA-CA---------TA-TTGT--A-ATAGTTGATGTACAGTAATT--GGA------G
gi|22 : aaacagtccttttcaacatatcatgcttTCATAGGCATTAAATTTCA-------------------------------------------TTTTTGTACATAGGTTCCAAC-CTTTATTTTTTAATAGT-----TTCGTTTGCTTTCATG--AGGTACTTATATTAAACATAGAATACCTACTTAAATATGCAGAA------------CTTTTGTAGAGATGAGTTTT-AATTTTACGTTTTTT--TGTAATTCT------ATT-AGATTTCTAAGTACATTTTATTTTATATTTCCA----------CTGTTAAAT
gi|23 : T-TTATTTAG--AT-TCT-GCAATTCTT-A-ACTGT---------T-----------TT--------T--TTT-------GT-----T-TGT-T--------TTT--ATTGTGTTTAAC-------TTTCTT----ATT-A-TTTAA------GA-------GAAAAAA-A-A----ACA-CACTTAAAACATTGAT-----------------------ATT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCCATGTTATT-C--------ACTAATCAAATAATATAATAAAAATAA-GATA-T--------AA----TCT--G--TAGAAAAAA-AT-CTG-TTAT
gi|25 : AACATT--TTTAC-TAC-----AAGTATATATACT---AAC---------AA-TATAT--AGCACCATATG-T--CAAC-ATCCAATGTTATG-C--------GTTATTTAAATAATATACTTAAACTAT-GATA-TTACAAATGTA----TCT--G--TAGAAAAGA----CTG-TTACT------------T-GTGTAAATGATATAC-AT-GTTGT
gi|26 : aaacAA-ATTTATACT---A-C---------TAATATAT--AGCACCATATG-T--GAAG-ATCCAATTTCATG-C--------ACTATTTAAATGGTATTCTTAAAATAA-GAAA-T--------TA----TC---A--TAGGAAA-A-ATACTG-TT-TCT-----------C-GTGTAAATataaacatattg
gi|27 : ttatatatgaaaataaattactagtggcaataatatttCTATATG-G--GACG-ATTCAATGC-----------------ATTTAAATTATATACTTGAA-TAT-GTTA-T--------TACAATTAT--A--TAGAAAAAA-AT-ATG-TAACT--------------A-GTTAATGCTTTAC-AT-ACTGTAAATT-GAAAT-ATAT--AAA-AA---------CA-ATGT--C-ATGTATCGTGT------ATT--GGA------GAATGAA--AAT-A-AAAC-AACAtgaagtggtatgaac
gi|28 : ATATAATTACCATTATGATA-TG-------TT----TTT--G--TAGAAAAAA-A--ATG-CTACTT--TTG------T-ATGAAAATACTATAC-AT-GTTGTAAATT-GCTATTGTAT---AA-TA---------AA-TTGT--A-ATATTTCATGT------ATT--GGA------TAATGAA--AAT-A-ATAA-ATTACa
gi|29 : actatTAATTAAA-TAC-G----T--------TA----TCT--G--TAGAAAAAATAT-CTA-TTACTT--ACG------T-AGGTCAATACTATAC-AT-GTTGTAAATT-AAAATTG-AT--AAA-CA---------TT-CTGT--A-ATATGTCATGT------ATT--TGA------GAATAAA--AAT-ATAAAACAATACagaaa
gi|3 : AAACC-TATATGG------TGCATT-------TTTT-G-CGTTTCATGTTTTTACAACATCCACCTTTT-ATTAATTTCAAAGGCAGTGAATCAAA---A-ATATATATAT--------------------TT------TT-----ACAGAAGATCTGAGGCATGATTCTTTCA-AGCA----TT--T--GCTTTCATA--AAATACCCAGAGTTAACATAGAATAAATATTTACATCCACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTCC-ATcaaaaaaaa
gi|3 : AAACAAAA--GGTCAA----GAATAT-TT-TTTAG--AT-TTT-GCTACTCTT-A-ACTGTATGCTGTTGT-----------GT--------T--CTTGTTGTTGTT-----T-TGT-TGTTTT-TTTTT--ATTGTTTTT--T-------TGTTTTT-TAAAT-T-TCTAAT-----TATTTAA-GAGAAAAA-ATC----ACA-CATTCAAAACATTGATTGGCTTGCCTCC-AAA-ACTGACACT---TAC---------T--TA-AT--GACACCATATG-G--TAAA-ATCCAATGTTATT-C--------ACTATTCAAATAATACAATTAAAATAA-GGTA-G--------TA----TCG--G--TAGAAAATA-AT-CTG-TTATTT--ATA------T-ATGTAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CC---------TA-TTGT--A-ATATATCTTGT------ATT--GGA------GAATGAA--AAT-G-AAAA-AATACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaaaacaaaaggtcaagaatattttttagattttgctactcttaactgtatgctgttgtgttcttgttgttgttttgttgtttttttttattgtttttttgttttttaaatttctaattatttaagagaaaaaatcacacattcaaaacattgattggcttgcctccaaaactgacacttacttaatgacaccatatggtaaaatccaatgttattcactattcaaataatacaattaaaataaggtagtatcggtagaaaataatctgttatttatatatgtaaatactatacatgttgttaattgaaattgtattagcctattgtaatatatcttgtattggagaatgaaaatgaaaaaatacaaaa
gi|30 : aaacctatatggtgcattttttgcgtttcatgtttttacaacatccaccttttattaatttcaaaggcagtgaatcaaaaatatatatatttttacagaagatctgaggcatgattctttcaagcatttgctttcataaaatacccagagttaacatagaataaatatttacatccacaaaaatgaattcacttttgtagagacaatttccatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagaaCAGTAAATCATA---A-ATATAG---------------------------------TTTTTTACATAATATCTAA--CATGATTCTTTTA-AGTACGTATG--TTTGCTGTCATG--AAATACTCAAATTAAACATAGAATAAATATTTACATCTAC--AAAT----TTC--CATTGT-TAGAGACGATTTTC-aaaa
gi|33 : GATAATACGA----------TTGT-AAATCTGCAC-GCA-CACAATCGGATAAC---TTACAGA--AAAAGGTTCAA----GTAGATATT-TTTAG--ATATTT-G-TATTTTT-
gi|34 : TATTT-----------T-GTATAAATGCTATTTTAT-ATTGTAAATT-AAAATTGT----TAGACA---------TA-CTGT----------TATGT------ATT--TGA------GAATGAA--AAT-A-ACCA-AATAC
gi|35 : TAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TGGT--A-ATATTTCATGT------ATT--GGA------GAATGAA--AA--A-ACAA-AATACaa
gi|36 : AAATG--AAAC-GTAGCTGTAAATT-GGAATTGTTT--AAA-CA---------TA-CTGT--A-TTATTGCATGT------ATT--GAA------GAATGAA--Aaaaa
gi|37 : atgtacactaataTT--ATA------A-GTGCAAATGCTATGC-AT-GCTGTAAATT-AAAATTGTAT--AAA-CA---------ct
gi|38 : attgaaaatatatgattattacataaaactaATT-GAAATTGTAT--AAA-CA---------TA-TTGT--C-ATAATTCATGT------ATT--GGA------GAATGAA--AAT-A-AAAG-ATTAC
gi|39 : atTTTTC-A-----ATGCTTATTGTTGAA---TC------A---AGATTTC--AATGAATTATTTTTGATAATTCCA----------TTGTTAAAaaaaaga
gi|4 : CC-TATATGG------TGCATT--CTATTTTTC-G-CGTTTCATGTTTATGCAACATCGATTTTTT-ATTTATTTCACAGGCAGTAAATCAAA---A-ATATAT-------------------------T------TTATTTTACAGAAGATCTAAGGCATGATTCTTTCA-AGCA----TT--TTTGCTTTCATC--AAATACCCAGAGTTAACACAGAATAAAAATTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATGTTTATGCTTTATGGTGTA---TT------ATGAAGGTTTCCTAGTGAATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACGGCAACATAATCAGAAGACGAATTATAA--AAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-GCTATTCTT-A-ACTTTATGTTGTTGTGTTTTTTGGGGTT--------T--TTT-------TTGGTTGT-TGT-TG---T-TGTTT---TTTTCAGT--T-------TTTTTTT-TAACT-T-TCTAATTTTTTAAG---A-G-AAAAAA-A-A----AC---------AACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATACG-G--TAAA-ATCCAATGTTATT-C--------GCTATTCAAATAATATAATTAAAATAA-GATA-G--------TA----TCT--G--TAGAAAGTA-AT-CTG-TTATTT--ATA------T-ATGTAAGTGCTAAAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CC---------TA-TCGT--A-ATATCTCATGT------ACT--GGA------GAATGAA--AAT-A-AAAA-ATTAC
gi|5 : TGTATACATGTATGTG-AAAACC-TATATGG------TGCATT-----TTTTTT-G-CGTTACATGTTTTTACAACATCGATTTTTTTATTAATTTCATAGGAAGTAAATTAAATATATATATATATAT--------------------TTATTTATTTTTTTTACAGAAGATCTAAGGCATGATATTTTAA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGACATAAAATAAATATTTACATCTTCAAAAAGG-AATTC--ACTTTCGTATAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTATTGCATTAGATTTGATAATTCCG----------TTGTTAAATGTAAACAGAAACATAACCAGAAGACGAATTATAAACGAAAAGGGTCAA----GAATTT-TT-TTTAG--AT-TTT-GATATTCTT-G-ACTGTATGTTGTTGT-----------TTGTTTGTTGT--TTT-------TT-----T-TGC-TG---T-TGTTC--ATTTTCCTT--T-------TTTCTTT-TAACT-T-TCTAA------AAC---ACGAAAAAAA-A-A----ACA-CACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGATACT---AAC---------T--TA-AT--AGCACCATATG-G--TAA-----------TAT-------------------AAT--------TGAAATAA-GATA-T--------TT----TCT--G--TAGACAATA-AT-CTG-TTATTT--ATA------T-A--TAAATACTATAC-AT-GTTGTTAACT-GAAATTGTAT--TAG-CA---------TA-TTGC--A-ATATCTCATGT------ATT--GGA------GAATAAA--AAA-A-AACA-AACAaaaaaa
gi|6 : aTGTATACATGTATGTG-AAAACC-TATATGG------TGCATT--CTATTTTTT-G-TGTTTCATGTTTTTACAACATCTATTTTTT-ATTAATTTCATAGGCAGTAAATTT-----A-ATATATATAT--------------------TT------TGT----ACAGAAGATCTAAGACATGATTCTTTCA-AACA----TT--TTTGCTTTCATA--AAATACCCAGAGTTGACATAGAATAAATATTTACATCTACAAAAATT-AATTC--ACTTTTGTAGAGACAATTTTC-------ATGCTTTTTGATGCA---TTATGAAGATGAAGGTTTCCTATTGCATTAAATTTGATAATTCCA----------TTGTTAAATGTATCTAGCAACATAATCAGGAGACGAATTATAAACAAAAAGGTTCAA----GAATAT-GT-TTTAG--AT-TTC-GATAATCTT-A-ACTGTATGTTGTTG-------------G--------T--TTT-------TT-----T-TGT-TG---T-TGTTC--ATTTTCCTT--T-------TTTCTTT-GAACT-T-TTTAA------AAC---A-CGAATATA-A-A----ACA-CACTCAAAACATTGATTTGC-TGCCTCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATT-C--------ACTATTCAAATACTACGATTAAGATGA-GATA-T--------TT----TCT--G--TAGAAAATA-AT-CTG-TTATTT--GTA------T-ATGTAAATACTATAC-AT-GCTGTTAATT-GAAATTGTAC--TAA-CA---------TA-TTGT--A-ATATATCAaaaa
gi|7 : aTGTATTTGTAAAATCATGTATAGCCAGTATTTATT--TTATTTTTTTGTCGTTT----TTTGTGCAACAACGAGTTTTC-A---ACTTTATAGGCAGTGAATTCTA-------------------------------------------TTTTTATACATAAGATCCAA--CATTGTTCTTTCC-AGAA----TTG-TTTGCTTTCATG--AGATACTCCAATTAAATATAGAATACCTACTTAAATCT--GAAAATC-ACTCCCAACTATTTTAGAAATGATTTTT-AATTTAATGCTTTTTGATGAG---TT------AAGCACGTTTATTAGTA-ATAACATATGATAATTTCAAATGTTAAAGTTGTAAAGTGTAAATAGCAATTTGACCGGAAGATTAAAGATAAAAGAAAA----CAACATGAAAGGT-TT-TTTA
gi|7 : tatgtatagttaaatgAAAA-T-A----TCA-CAT---AAACCTTGATTTGC-TGCCTTCTAAA-GTT---------------------------AT--AACACCATATGTGCCTA----TTCAA-GTTAT-------------TATTTAAATAATATACTTAAAATGT-GTTA-T--------CA----TCG--T--TAGAAAA-A-AT-ATG-TTACCT--GT-----------GTAAATGCTACAC-AT-GTTGTAAATT-GGA--TATATTATAG-CAACCGAGAAGTG-TTGTGAG-ATATATCATATTAC---ATTACAGAAATTATGAATGAACCGAC-A-AAAA-AATActcttattgtgtcattaaagtgaaaatatcacataaaccttgatttgctgccttctaaagttataacaccatatgtgcctattcaagttattatttaaataatatacttaaaatgtgttatcatcgttagaaaaaatatgttacctgtgtaaatgctacacatgttgtaaattggatatattatagcaaccgagaagtgttgtgagatatatcatattacattacagaaattatgaatgaaccgacaaaaaaatat
gi|8 : tatgtatagttaaatgtgtatttgtaaaatcatgtatagccagtatttattttatttttttgtcgttttttgtgcaacaacgagttttcaactttataggcagtgaattctatttttatacataagatccaacattgttctttccagaattgtttgctttcatgagatactccaattaaatatagaatacctacttaaatctgaaaatcactcccaactattttagaaatgatttttaatttaatgctttttgatgagttaagcacgtttattagtaataacatatgataatttcaaatgttaaagttgtaaagtgtaaatagcaatttgaccggaagattaaagataaaagaaaacaacatgaaaggttttttactcttattgtgtcattaaagtgA----TT--TTTG---TCTTGGCAAATATTTTCAGTTG-TAAAAAATAAATACTTACATCTACAAAAATG-AATTC--ACTTTTGTAGAGACAATTTTC-ATTTTTATGCTGTTTGATGTA---TT------ATGAAGGTTTCCTATTGCATTAGATTTGATAATTCCA----------TTGTTAAATGTAAAAAGCAACATAATCAGAAGACGAATTATAAATAAAAAGGGTCAA----GAATAG-TT-TTTAA--AT-TTT-GATATTCTT-G-ACTGTATGTTGTTGT-----------TT--------G--TT------------------GT-TG---T-TGTTT---TTTTGCTT--TGTTCATTTTTCTTT-TAACT-T-TCTAA------AAC---C-GGAAAAAA-A-AC---ACA-CACTCAGAACATTGATTTAC-TGCCCCC-AAA-ATTGACACT---AAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATTCAATGCTATC-C--------ACTATTCAGATAATATAATTAAAATAA-GATA-T--------TT----TCT--G--TAGAAAACA-AT-CTG-CTATTT--ATA------T-ATATAAATACTATAC-AT-GTTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATCTCATGT------ATC--GGA------TAATGAA--AAT-A-AAAA-AGTACt
gi|9 : GAGTTGACATAAAATAAATATTTACATCTAAAAAAATG-AATTC--ATTTTTGTAGAGACAATTTTC-ATTTTTATGCTTTTTGATGTA---TT------ATGAAGGTTTCCTATTACATTAGATTTGATAATTCCA----------TTGTTAAATGTAAACAGCAACATAATTAGAAGACGAATTATAAACAAAAAGGGTCAA----GAATAT-TT-TTTAG--AT-TTT-AGAATTATT-G-ACTGTATGTTGGTGT-----------TTTTTTTG--T--TTT-------TT-----T-TGC-TG---T-TGTTC--ATTTTCCTT--T-------TTTCTTT-TAACT-T-TCTAA------AAC---ACG--AAAAA-A-A----ACA-CACTCAAAACATTGATTTAC-TGCCTCC-AAA-ATTGACAAT---TAC---------T--TA-AT--AGCACCATATG-G--TAAA-ATCCAATGTTATC-C--------ACTATTCAAATAATATAATCAAAATAA-GATA-T--------TT----TCT--G--AAGAAAATA-GT-CTG-TTATTT--ATA------T-ATATAAATACTATAC-AT-ATTGTTAATT-GAAATTGTAT--TAG-CA---------TA-TTGT--A-ATATATCATGT------TTT--GGA------GAATGAA--AATAA-AAAA-AATACaaaaaa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): ACTTCCGATCTCATCTTAAAAATCACAAATAAATTGTTTTTTTTATATTTAAAAGATTATGTATATAAATTAAAAAAAAAACAACGTAAACCCAATACATACAAAATGTATAGCATTATACTATATATTTTTTCCCCATTATTAACAAGGAATGATATATATCCTTTATGAATAACAAAGGATATAAAGACA
Unaligned ( gi|31 ): TTGAGTACATAATATATATATATATATATATATGTGTGTGTGTACGTACGTCCGTGTGTCCGATAGACAGATTACTGTATACATGTTTGTGAAAAGTGCATTTAATTATT
Unaligned ( gi|32 ): ATAATATATCAACATGATAGTGAATAACAAAGGATACAAAGACACATTTGTGCAGAACGTTTTTATGAATCATTTTAAACAGTTCGCTATATATATTT
Unaligned ( gi|40 ): TATATATATATATATATATATGTGTGTATATATATACCTCTGTA