lowQualScore : 1111 111 111 22 333333 222222222222 1 11111111 111 222222 11111111 22222222222 1 1111111111111 22222222222222
lowQualScore : 1 9999 555 1 1 666 0 11 2 44444 1 33333 22 3333 22 555555 3 22 6666 555 999999 1 22 6666 2 2 555555 7 333 999999999999 5 7 2 2 2 55555555 111 4 333 000000 33 444 7 22222222 0 5 3 1 1 0 6 4 55 33333333333 55 8888 0 777 4 4 7777777777777 777 33333333333333 3 5 5
lowQualScore : . .... ... . . ... . .. . ..... . ..... .. .... .. ...... . .. .... ... ...... . .. .... . . ...... . ... ............ . . . . . ........ ... . ... ...... .. ... . ........ . . . . . . . . .. ........... .. .... . ... . . ............. ... .............. . . .
lowQualScore : 8 6666 333 7 7 555 2 11 1 55555 8 33333 55 9999 55 222222 6 55 4444 000 222222 8 44 1111 0 0 555555 0 333 888888888888 4 1 1 6 2 33333333 888 4 999 444444 77 777 9 44444444 3 0 8 1 8 2 3 0 55 33333333333 55 5555 2 000 0 0 5555555555555 000 55555555555555 0 0 0
consensus : CTTTATTT-AGAGAGGGTAAA-CTCA--T-TAA-GTT--TTATATACAATATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGATT-A---C-AA--TG----T--T------TT-A--C----AT---AAA---CAATATT-TG--GAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA---A---AGN---G--CAATATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGC-------AACGTTATTCAGTTTTCTGATTGN--TG-AAGGT---ATATTGTTCC-A----GACTTCCATAGCAGAATAAGAA--AA---TGCAC-------GTTTGAGAAGTTCAGTTTTAGCCTTNGGATGCATGATGTCCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TATGAAG--GTACTAAATT----GTTAATTGCTTTAAATA---C-AA-A-----A----A-TGCC---AATA--------------TGATATTTTATTCTGTCAGGAAATGATAACCATCGA-AG-TTCTTTAAA
Reference ( gi|10 ) : CTTTATTT-AGAGAGGGTTAG-CTCT--T-TAA-GTT--ATATATACAATATAAATCTTATTTTCAATGAGGCTGTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGATT-A---C-AA--TG----T--T------TT-A--C----AT---AAT---CTATATT-TG--GAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAGTGACA---A---TGA---G--CAATATTTTATTTTCATGCGAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATT-TAAAAGTAGC-------TACGTTATTCAGTTTTCTGATTGG--TG-AAGGT---ATATTGTTCC-T----GACTTCCATAGCAGAATAAGAA--AA---TACAT-------GTTTAAGAAGTTCAGTTTTAGTCTTTGGATGCATAATGTCCTTGTTTGAAATTGAGCGTAGATTATAGTGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TGTGAAG--GTACTAAATT----ATTTATTGCTTTAAATA---C-AA-A-----A----A-CGCC---AATA--------------TGATATTTTATTCTGTCAGGAAATGATAACCATCTA-AG-TTCTTTAAA
gi|2 : CTTTATTT-AGAGAGGGTAAA-CTCA--T-TAA-GTT--TTATATACAATATAAATTTTATTTTCAATGAGGCCCTCTG-AATAACACATATAAAATCAAGCATAC-----CAAGATT-A---C-AA--TG----T--T------TA-A--C----AT---AAAA--CAATATT-TT--GAGCAGAAA----CCT------------A-CAA-TGT------TAACATTGACA---A---AGA---G--CAATATTTTATTTTCATGCGAAAGAC-GTTT-AGTTATCAGAAATTCTTTGTACACATATT-TTAAAGTAGC-------TACGTTATTTAGTTTTCTGATTGT--TG-AAGGT---AAATTGTTCC-A----AACTTCCATAGCAGAATAAGAA--AA---TGCAC-------ATTTAAGAAGTTCAGTTTTAGCTTTTGGATGCATAATGTCCTTGTTTGGAATTGAG-------------GAGTGTTAATGGGTATTTTAATAAGG-TTAC--ATATA---------TATGAAG--GTACTAAATT----ATTTATTGCTTTAAATA---C-AA-A-----A----A-TGCC---AATA--------------TGATATTTTATTCTGTCAGGAAATGATAACCATCTAGAG-TTCTTTAAA
gi|4 : CTTTATTT-AGAGAGGATAAA-CTCA--T-TAA-GTT--GTATATACAATATAAATTTTAATTTCAATGAGACCCTCTG-AATAATACATATAAAATCAATAATAT-----CAGGATT-A---C-AA--TT----T--T------TT-A--C----AT---AAAA--CAATATT-TG--GAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAAAGAAA---C---TGT---G--CTATATTTTATTTTCATGCAAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATT-CAAAAGTAGC-------TACAATATTCAGTTTTCCGATTG-----------------------T-T----GACTTCCATAGCAGAATAAGAA--AA---TGCAC-------GTTAAAGAAGTTCAGTTTTAGCCTTTGGATACATAATGTCCTTGTTTGAAATTGAGCCTAGATTATAGTGAGTGTTAATGGGTATCTTGATAAGG-TTAC--ATATA---------T---AAGATATACTAAATT----ATTTGTTGCTTTCAATA---C-AA-A-----A----A-TGCC---AATA--------------TGATATTTTATTCTATCAGGACATGATAACCATCTA-AG-TTCTTTAAAttttttaaaagaatgtgttttatatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagatatacgtctaaatagatataattttgaatttagtttatcacatattttactgacttgtatgttccaacttaatgtttcatcaataaataagccaagaaggttttgacatctttcatgtttgatttgtgaattgttgactgaaatacataattacccagaatgtttaattcaatacatgtagttatgtacctataatcatacatgtagttttgttatatnnnnnnnnnntttgttatatgtagttatgtacctataatcatacatgtagttttgtttcaatttgccataaatgacaatcactaaccatcggcgtacatgtcaacagatgagtcaccaacaaccatca
gi|3 : CTTTATTT-AGAGAGGGTAAA-CTCA--T-TAA-GTC--TTTTACACAATTTAAATCTTATTTTCAATGAGGTCATTTG-AATAACACATTTATAATCAATAATAT-----CAAGATT-A---T-AA--TG----T--T------TT-A--------T---AAA---CAATATT-TG--GAGCAGATA----CCTGTTAAAATCTATT-GAA-TAT------TAACAATGACA---A---AAT---G--CACTATTTTATTTTCACGCGAAAGAT-GTTTTGGTGATCAGAAATTCTGTGTACACATATT-TAAAAGTAGC-------TACGTTTTTCAGTTTTCTGACTGT--TG-AAGGT---ATATTGTTCC-A----GACTTCCATAGCAGAATAAGAA--AA---TGCAC-------GTTTAGGAAGTTTA-----AGGCTTTGGATGCATAATGTCCTTGTTTGAAATTGAG-------------AAGTGTTAATGGGTATCTTAATATGG-TTAC--ATAGA---------TACGAAG--ATACTAAATT----ATTAATTACTTTAAATA---C-AA-A-----A----A-TGCC---AATA--------------CGATATTTTATTCTGTCAGGAAATGTTAACCATCTA-AGTTTTTTTAAAaagtttaaaagaaggtgttttatatggtgcatccaatatgagtctagcacctttattatgtattttaagtatcttattagtattagaaagtgtaccagtatcccaaatagtcatacaacagtccaatgtaggctgaatatacgcattgtagaataaatttttca
gi|7 : taataataatgtCTTTATTT-AGAGAGGATAAA-CTCA--T-AAA-GTT--TTATATTGTATATAAATCTTATTTTCAATGAGTCCCTCTG-AATAACACATTTAAAATCAGTAACAT-----CAAGATC-A---C-AA--TG----T--T------TT-A--C----AT---AAA---CAATATT-TG--GAGCAGATA----CCTGCTAAAATCAATA-CAA-TGTTACATGTAACAATGACA---A---AGT---G--CAATATTTCATTTTCATGAGAAAGAT-GTTCTAGCAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGC-------AATATTATTCAGTTTTCTGATTAA--TA-AAGTT---GTATTGTTCC-A----GACTTCCATAGCAGAATAAGAA--ACGTTTGCAC-------ATTTGAGAAGTTCAGTTTTAGCCTTTGGATGCATGACGTATTTGTTTGAAATCGAGTATAAATTATAGCGAATGTTAATGGGTATCTAAATAAGG-CTAC--ACATA---------TATGTAG--GTACTTAACT----GTTAATTGCTTTAAAAA---C-AA-A-----A----A-TGCC---AATA--------------TG--ATTTTATTCTGTCAaagttcaagataaaagaaggtgttttatatgttgcatccaatatgagtctacttgaagctttttctgtattttaagtatgttattgatataacaaagtgtaccagtaccccaaataatcggacaattgaccaatgtaggctgaatatacgcattgtagaataaacattccattt
gi|9 : attactactacttataataatatCTTTATTT-AGATAGGGTGAA-CGCA--T-TAA-GTT--TTATACACAATATAAATCTTGTTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATAAATAATAT-----CAAGATT-A---C-AA--TG----T--T------TT-A--C----AT---TATAAACAATATT-TG--GATCAGATA----GCTGCTAAAATCAATA-CAT-TGT------TAACA--------------------------ATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAGGTATC-------AATGCTATTCAGTTTTGTGATTGACTTG---GGT---ATATTGTTTC-A----GACTTCCATAGCAGAATAAGAA--AA---TGCAC-------GTTTGTGAAGTTCAGTTTTTTCCTTGGGATGCATTATGTCCTTGTTTGAAATCGTGCATAGA-AATAGCCAGTGTTAATGGTTATCTTAATAAGGTTTAC--ATATGATATATAATTATGAAG--GTACTTAATT----GTTAATTGCTTTAAATA---C-AA-A-----A----A-TTCT---AATA--------------TGATATTTTATTCTGTCAGGAAATGCTTACCATAGA-AG-TTCTTTAAAttaaacagtgtaaacaatagtttaaacagataaccaattatgtttgt
gi|8 : CTTTATTT-AGAGAGGGTAAA-CTCA--T-TAA-GTT--TTGTATACAATATAAATCTTATTTTCACTGAAGCACTATG-ATTAACACATTTGAAATCAAAATTTT-----CAAGATT-AAAAC-AA---A----T--T------TG-A--C----G----AATA--CAATATT-TA--GAG----TA----C--------ATTAATA-CGA-CGT------TAACAATAATA---A---AGATGTA--CAAT---------TCATAAGAAAAAT-ATCTTAGTAATCAGAAATGCTTTGTACATATATT-TAAAAGTAGC-------ATCGTAATTCAGTTTTCTGATTGT--TA-ATGGTTCGATAT-----C-TA---GACTTTCATAACAGAACAAGAA--AA---TGCATCAGGCACGTTTAAGAAGTTCAGATTTAGCCTTAATATGCATGATGTCTCTGTCTGAAATCGAACGTAGATTATAGCGAGTGTTAATGTATATCTTTAAAACG-TTAC--ATATA---------TATGAAA--GTACTAAATT----GTTAATTGCTTTAAAAA---C-AA-A-----ACTTTG-TGTC---ATTT--------------TGATATTTTATCATATGAGGAAATGATAACCATTGA-GG-TTCTTTAAAacagtt
gi|15 : tactaataataataatgtCTTTATTT-AGAGTGGGTAAA-CTCC--T-TAA-GTT--TTATATACAATATAAATATTATTTTCAACAATGCCCTCTG-AATAACACATTTTAAATCAATAACAT-----CAAAATA-A---C-AA--TG----T--T------TT-A--C----AT---AAA---CAATATT-TG--GAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA---A-----A---G------------------TGCGAAAGAT-GTTTTAGTAATCAGAAATTCTTCATACACATATT-TAAAAGTAGC-------TAAGTTATTCAGTATTCTGATTGT--TG-AAGGC---ATATTGTTCC-A----GACTTCCATAGCAATATAAGAA--AA---TGCAT-------GTTTAAGAAGTTCAGTTTTAGcagt
gi|1 : aataataataataatgtCTTTATTT-AGAGAAG---------------------------ATA-AATATAAATATTATTTTAAATGAGGCCCTCTA-AA-AACGTTTTTAAAATCAATAATATGAACTCACGATT-A---C-AA--TA----TATT------TT-A--C----CT---AAT-------------------ACATA----CCTGCTAAAAGCAATA-CCA-TAT------TAACAATAACA---A---AGT---A--CAACATTTCATTTTCAGGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-CAAAAGTAGC-------AAAGTTATTCAGTTTTCTGATTGG--AG-ATGGT---TTATCGTTACATAGCAGAATTTCATAGCAGAATAA-------------------------TAA-------AGTTTTAGTCTTAGAATTCATGATGTCTTTGTTTGAAATCGAGCGTAGATTATATCAAGTGTTAATAAGAATCTAAATAAGG-TTCC--ATATA----------ACGAAG--GTGCTAAATTGTAAATGAATTTCTGGGAATAATGC-AA-A-----A----A-TGCC---AATA--------------TGATATTTCCTCCTGTCAGGAAATGATAAAAAACGA-AG-TTCTTTAAAc
gi|16 : gtCTTTATTC-AGAGAGGCTAAA-CTCA--T-TAA-GTT--TTATATACAATTTAAATTTTATTTT-AATGAGGCCCTCTG-AATAACACACTATATATCAATTATAT-----CAAGATT-A---C-AA--TG----T--T------TT-G--C----AT---GAA---CAATATT-TG--GAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAGTGACA---A---AGT---A--CAATATTTCATTTTCATGCGAAAGAT-GTTTTTGTAATCAGAAAACATTTGTTCACATATT-TAAAAGTAGC-------AACGTTATTCAGTTTTCTGGTCGA--TG-AAGGT---ATATTGCTCC-A----AACTTCCATGGTAGAATAAGAA--AA---TGCaagtcaaatagatggtgttttatatggcgcatccaatatgagtctagcagatttcgtctgtattttaagtatcacatcagtataagaaagtgtaccagtaccccaaatagccaagcaatggtccaatgtaggcattgtaatataaaaaattattatcaaaatttaagtatttagatagtctaaggagacatagttttgaatttagttcatcactttactgacctgtgtgttccagctcaatggctcatcaataaatgagccaagtaggttttgacatcttacatgtttgatttggaagttgctgactgaaattcataaatttccataatttctaaatttgatatgtgtacctaaaagcatatcggtagttttattagatttaaaattatattattatttttacacaaacttttatttttttgtaacattttttttcaatacgtggcgattactaccatgattagttgcacatgccaacatttgaatcatcaaccgccatcgaaggttagataacataaatcaagaaaagtagaggacctaaagtggaaccttgccgccaaaaaacggccagaatgaatggtacctaatttaacaatttgactgttttttagttaggacagagatcacagtactgtttgttctgtaaaatgacattatcgtctactaaaccaatgccataagtatatccataaacagtatcccgacacttttcccagaatcaatttcctttatcaatttgtcagttataaatgttagggcaat
gi|14 : taataatatCTTCATTT-AGAGATGGAAAA-CTCA--T-TAA-GCT--TTACACACAATATAAATCTTATTTTCAAT---------------AACACATTTAAAATCAATAATAT-----CAAGATT-A---C-AA--TA----T--T------CT-A--C----AT---AAA---CAATATT-TG--GAGCAGATAGA--TTTGCTGAAATCAATA-CAA-TGA------TAACAGTGATA---A---AGT---A--CAATATTTCAATTTCATGAAAAAGAT-GTTTTAGTAATCAGAGATTCTTTTTACAC-------------------------CG--------TTTTCTGATCAA--TG-AAGGT---ATATTGTTCC-A----GACTTCCATAGCAGAATAAGAA--AA---TGCAT-------GTTTGAGTAGTTAAGTTTTAGCCTTAGGATGCATGATGCCCCCGTTTGAAATTAAGTGTAGATTA
gi|17 : taataaatattaatgaataatttCTTCACTT-AAAGAGGGTAAAACTCA--T-TTA-GTT--TTATATACAAAATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGATT-G---C-AA--TG----T--T------TT-A--C----AT---AAAA--CAATATT-TG--GAGAAGATA----CCT---AAAATCCATA-CAA-TGT------TAACAATGACA---A---AGT---A--CAATATTTCATTTTCACGAGAAAGGT-GCTTTTGTAATCAGAAATTCTTTTCACACATATT-TAAAAGAAGC-------AACATTATTCAGTTTTCTGATTGA--TG-AATGT---ATAGTGTTCC-A----GACTTTCA
gi|18 : aataatgataatgtCTTTATTT-AGAGAGGG--AA-ATGTAAT-TAA-GTTTTATATACACAATATAAAT---ATTTTCAATGATGTACTCTG-AATAACACATTTAAAATCAATACTAT-----GAAGCTT-C---C-AA--TG----T--T------TT-A--C----AT---AA----CAATATT-TG--GAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA---A----GT---A--CAATATTT-ATTTTCATGCGAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATCAAAAAAGTAGC-------GACGTTATTCAGgattag
gi|24 : CTTTATCT-AGAGAGGGT-AA-CTCA--T-TAA-GTT--TTAAATACAATATAAATCTCATTTTCAAAGAGGTCCTCTC-AATAACACATTTAAAATCAATAGTAT-----CAAGATT-A---A-AAATTA----T--T------TT-A--C----AT---ATT---CAATATT-TG--GAGCAATTA----CATCCTAAAATCAATA-CAG-TGT------TAAC--------------TGA---GTACAATATTTCATTTTCATgaaagtatttagtagaaggtaacgtctcatactt
gi|26 : ataatattgataataataatgtCTTTATTA-AGAGAGAGTAAA-CTAA--T-TAA-GTT--TTATATACAATATAAATTTTATTTTCAATGAGTCTTTCTA-AATACCACATTTAAAATTAATAATAT-----CAAGATT-A---C-AA--AA----T--TAAAATCTT-A--CTT--ATG--AA------GTATT-TG--GAGCAGATA----CCTGCT-AAATTAATA--AA-TAT------TAACAATGACA---A---AGA---taagc
gi|27 : gtCTTTATTT-AGAGAGTGTAAA-CTCA--T-TAA-GTT--TTATATACAATATAAATATCAATTTCAACGAGGCTCTCtgtacaa
gi|22 : taataattataatcatgataatagtgtCTTTATTT-AGAAAGGGT--A-TTCT--CATAACATT--TTATATACAATATAAATCCTATTTTCATTGAGACGCTCTGCAAT--CAAGTTTACAGTAAAGCATAT-----TAA---T-A----------G----T--T------TT-G--CCATTAT---AAA---C--TGTT-TA--GAGAAGATAAAAGTCTGCTACAAacatatggcattcatccgattacaatattgttttgaatatttgaatggacaagtgtttgtattatagagtttct
gi|41 : atatgaaaataatatCTTTATTT-GGAGAGGGTAAA-CTCA--T-TAA-GTT--TTATATACAGTAgtaaacctattgcatggtggttatcaaaataatgaaatctggatactattatgctctttaaattacacaaacatgtttcagtcacaaaa
gi|36 : tgatatCTTTATTT-AGAGAGGATTAA-CGCA--T-TTA-GT----TATATACAAAATAAACATTATGTTatg
gi|5 : ataatgataataataaaaatgcTTTATTTTAGAGAGGGCAAA-CTTA--T-TAA-GTT--ATATATACAATATAAATCATTTTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATACTAT-----CAAGATT-A---C-AA--TG----T--T------TT-A--C----AT---AAA---CAATATT-TG--GAGCAGATA----CCTGCTGAAATTCATA-CAA-TGT------TAACAATGAAA---A----GT---G--CAATATTTTATTTTCATGCAAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACATATATT-TAAAAGTAGC-------TTCTTTATTTAGTTTTCTGATTGT--TG-AAGGT---ATATTGTTCC-A----GACTTTCATAGCAGAAAGAGAA--AA---TGCAC-------GTTTAAGAAAATCAGTTTTAGCCTTTTGATGCATAATGTCCTTGTTTCGAATTGAGCGTAGATTATAGCAAGTATTAATGGGTATCTTAAAAAGG-TTACNNNNNNN---------NNNNNNN--NNNNNNNNNN----NNNNNNNNNNNNNAATA---CTAA-ATTATTA----ATTGCTTTAAATACAAAAATCACTATATGGTATTTTATTCTGTCAGGAAATGATAACCATCTA-AG-TTCTTTAAA
gi|43 : tataataagtattgtgtTTCATTC-ACAGAGGGTAAA-CTCG--T-CAA-GTT--TTATATACAAatgtttaagagaatgactgtgttttatattgcgcatccaatatgagtctagcagctttcttctatattttaggtatctaattagtatta
gi|29 : tgataatatgTTT-CGAGAGGGA-AA-CTCA--T-AAA-GTT--TTAGATACAATATAAATCGTATTTTCAATGAGACCCTCTT-AATG-TA-ATTTAAAATCAATAAATT-----CAGGATTTA---C-AA--TG----T--T------TT-A--C----ATATAAA------ATACT-TG--GAGCAGATA----CCTGCTAAAATC
gi|32 : aataataataacaataaatct-AGAGACGGTCAA-CT-T--C-TAA-GTT--TTATATACAATATAAATCTTATTTTCAACCAGGCCTTCTG-TATAACACATATAAAGTCTATGATAT-----CAAGATT-A---CAAA--TA----T--T------TTGA--C----A----AAC------TATT-TG--GAGCAGATA----CCTGCT
gi|35 : TCA--T-TAA-GTT--TTATATACAACATAAATCTTATTTTCAATGAAGCCCTCTA-AATAACACAT
gi|11 : gtcacttataataataaaaagAACACATT-AAAATTGATAATGA-----CAAGATT-A------------------T------TT-AGAC----AT---A------TAGATAACGAAGAGCAGATA----CCTGCTAAA-TCCACATCTA-TGT------TAGCAATGGCA---A---AAAAT-G--TAAAATCTT----TCATGAGAAAGATAGTA--AGCAATTCGAAATTCTTTGCACACATATT-TAAAAGTAACATTTTTTTATTTTATTCAGTTGTCAGATT-T--TGAAAGAT---ATAT-----C-T----G----TCAGAAAAGATTGAGAATCAG---T--GT-------TTTTACAAAGTTCAAT
gi|12 : aaACATTTACAATCAATAATAT-----CAAGATT-A---C-AA--TGAAAAT--G------TTGA--C----AT---ATT---AAATATT-TG--AAGCAGATA----CCTGTTAAA-TAAATA-TAAATGT------TTACAATGGCA---AACATGC---A--CAATTTATCAATTTCATGAGAA-GCT-AATTTAATAATCAGAAATTCTGTATTCAGATATT-TAAAAGTAGC-------AATGTTATTCAGTTATCTTATTAA--TT-GAGGT---ATATTGTTCC-A----GATTTCTTTGGCAGAATAAGAT--AA---TGAAA-------GTGT-----GTTAAGTTC----CTTTG--TGCATAATGTCCTTGTTTGATATGGAGCGTAGATTATAGCGAGTAATAATAAGTATCTTATTAAGG-GAGC--ATATA---------CATGAAC--ATACTAAATT----GTTAATTGCTTTAAAAA---T-AACA-----ATT--A-TGCC---AGAA--------------TGATATTTTATCCTGTCAAGAAATGATAAgtagggagctttatatgccgacctcagtctagcagcattaagtatcatattagtatttaaaatcgtaccagtaccaaacagttgaccaatagtcaaatgtagattgaatataagcactgtagaacaaatgtttcattctagtatttaatcatataatagacataactatgaactt
gi|19 : TCAAAATCAATAATAT-----CAAGATT---------------------------TT-A--C----AT---AAA---CCATATT-TG---AGAAGATA----CCTGCCAAAATCAATA-CAA-TGT------TAACAATGACA---A---AGA---A--CAATATTTCATTTTTATGAGAGAGAT-ATTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGT-------AATCTAAATCAGTTTTCTGATTGA--TG-AAGGT---ATATTGTTCC-A----ATCTTCAATAGCAGAAactttt
gi|21 : aaatgatattgggtaatgtaaaatgaaaatacatttagagaaggttaagttttatatacaaggtaactcCAATAATAA-----TAATA---A---T-AA--TG----T--T------TT-A--C----AT---CAA---CAATATT-TG--GAGCAGATA----CCTGCCAAAATCATAA-CAA-TGT------TAACAATGACA---A---AGT---A--CAATATTTCATTTTTATGAGAAAGTT-GTTTTAGTAATCAGAAATTATTTGTACACATATT-TAAAAATAGC-------AACGTTATTCAGTTTTCTGATTGT--TG-AAGGT---ATATTGTTCC-A----GA
gi|23 : gtttatataattttgtacattagtctaagtttatgtagacttaatataccaacaa--GAGCAGATA----CCTGCAAAAATAAATA-CAT-TCT------TAACAATGACA---G---TGT---A--AAGTTTTTAATTTTCATG--AAACAT---TTTAGTAATCAGAAATTATGTGTACATGTATT-TGAAAGTAGA-------AACGTTATTCAGTTTTCTGATTTG--TGTAATG----ATAATGTTCC-A----TACTTCCATAGAAGAATAAG-A--AA---TACAC-------GTTTGAGAAGTTCAGTTTTAG
gi|42 : catcaaaactataaaGT------TAACAATGGCATAAA---TTA------CAATATTTCAAGTTCATGGGGAAGAT-GTTTT
gi|31 : TGATTGG--TG-AAGGT---ATATTGTTCC-A----GATGTCAATAGCAGACTATGAA--AA---TGCAC-------GTTTGAAAAGTTCAGTTTTAGCCTTAAGGTGCATGTTGTTCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTCATAGGTATTT
gi|37 : TGAGAAGTTCAGTTTTTGTTTTAAGGTGCACGGTGTTATTGTTTGATATAGGGCGTTAATAATAG
gi|25 : CACGATGACATTGTTTGAAATCGAGCGTAGATTGTAGCCAGTGTTAATGGGTATCTTAATAAGA-TTAC--ATATA---------TATAACG--GTACTTAATT----ATTAATTGCTTTAAATA---C-AA-A-----A----A-TGCC---AATA--------------TGACAATTTATTCTGTAAG
gi|45 : gtttattttaaattctgtttaaaGACATTTTATCCTGTCAGGAAATGATAACAATCGA-AA-TTtctataattataaagaacgttactttcatacagttactttaaaattgataaaa
gi|20 : ATTTTGTTCTTCCAGGAAATGATAACCATC
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TTTTACATGTTACTGACTTCTGTGTTCCAACCTAATGTTTCATCCCAGAATGTTTAATTTTGTTATGTGTACCTATAATTATACATGTACATGTTGTTTTATTAGGATTTAAAGTCATGTTTTTATTTGTACACCAACTTTCAATTTTTATAACATCATTTTGTAATTTTGTTTCGACTTGCCACACGTGACAATCACTAAAATGAATAGTAGATCATCGACGTATATGTCAACGCTTGAATCATCAAGAACCATCAGAAAATCATATATGAATCAAGAAAAGAAGAAGACATAGAATTGAACCTTGTGGGAAACCAGAATGAATGGTGCCTAAGTTAACACTATGGCATCTGTAGTTGGGTAGGACCACGGTGTTCACTAAACTGATACAGTTTTAATTTATGTAAGATAGTATCATGGTCTTATAAATCAAATGCCTCTCGTAGAAAAATAAACACTCCTGGCAAGTTTCCCAGAATAAATTTCTCTTACCCATTTGTGGGTTTAAATTGTTAGGGCAGTTTGGCAAGACTTTTTTTAAAGGAATCCAAATTGAATTTAATTGTATGTAATACGTCACCTATTCAACAGATAGGGGACATATATATGTACTG
Unaligned ( gi|13 ): GTGATTAAGAGTCTTGTTAGTTCTAGAAAGTGTACTAGTACCCTAGATAGTTGAGTAATAATCCAGTTAATGCTGAATATAAGCATTGTAGAATAAATTAATGTTTCATTCCAAGATTTAAGAATATAGAACTTCCTTAAAAGAGACATAGTTTGAAAGTATTAAGTTAATTTACTAACTTGAGTGTTCCAACTTAAAGTAGTTTTTAACGTTTTTGATTGGTTGACTGAAATACACAAAACTCCCGAATGTTTAAGTTTGTCACGTGTGCTTATAAGCGTACATGTAGCTTTATAAGTATATTTTACACCAACTTTCATTTTTTATATAGCCATTTTGTATTTTTGTTTGATTTACCGCACACGTGACAATCACTAACAGATAATTTTACTCAGCATTT
Unaligned ( gi|28 ): AAGGGTTAAAAAAAGGTGTTTTATATGGCACATCCAATATGAATCTAGCAACTTTCTTCTGTATTTTAAGTATCTTATCAGTATTAGAAAGTGTATCAGTACCCCGAATAGTCGAGCAATAATCCAATGTAGATATCATGGTGATGGACCTTGTTAAATTTATTTTATT
Unaligned ( gi|30 ): TATTCATAACATGCGAATAGATATACTTATCACAAAAATAAAAGTTTCAGATGGGTTTTATTTTATCAAATAAAAGTATAAAATGTCTGCTTTCTCGTGATATCTTTCCAACTTTATTTATTAAATGTTTAATTTCACAAATAATGAACAGAATAAGC
Unaligned ( gi|33 ): ATTCAAGAAAAATATGTTTCAGTAATCCCAAACAGTTGAGCAATATAGACCAACTGCAGGCTGATAATTAAAATACATCTGATGTAGACATTGTAGAATAAATGTTTCATTTCAAGATTTAAGCATA
Unaligned ( gi|34 ): AACCATCAATGGCGCCTAATTTAACACGTTGACATCTTTTTTTAGATATGACTGAAACCACTGTACTGTACGTTCAGTAAGATTATAGAGTTTCAATTCATGTAAA
Unaligned ( gi|38 ): AAAATAATAACAATAATATCTTTATTTAGACAGGGTAAATGCATTTAGTTTTATAAACAATGTTA
Unaligned ( gi|39 ): TTAAAATATTTAATTGAAAGAGTTCAATATGGCGCATACAATATCAGTCTAGCAGCTTT
Unaligned ( gi|40 ): ATAACACTATTAATAATAATTATGTCTGTATTTAGAGAGAATAAACCCATTAAGTTT
Unaligned ( gi|44 ): TCAAAATGATATGTTACCAAATTGAAAAAAACAACGAGACATA
Alignments
lowQualScore : 111111111 222222222222222 1111 111111
lowQualScore : 1 1 1 22 2 44444 1 333 1 22 3333 22 555555 1 22 3333 333 55555555 5555 1 1 555555 22 333 666 22 2 1 2 2 88888888 333 4 333 2 2 4444 444 8888888 1 0 3 55 444444444 99999 55 3 666666666666666 2222 000000 55 2 4 4
lowQualScore : . . . .. . ..... . ... . .. .... .. ...... . .. .... ... ........ .... . . ...... .. ... ... .. . . . . ........ ... . ... . . .... ... ....... . . . .. ......... ..... .. . ............... .... ...... .. . . .
lowQualScore : 6 5 5 22 0 33333 7 000 7 44 7777 44 000000 7 44 7777 000 55555555 8888 9 9 222222 55 222 111 66 1 3 0 1 11111111 999 2 777 1 1 5555 777 7777777 0 4 6 00 555555555 11111 00 6 444444444444444 7777 555555 00 5 4 4
consensus : CTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TT---AC-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---GT--GCAA--TATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGATTG--NTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---T-------GCACGTTTGAGAAGTTCAGTTTTAGCCTTNGGATGCATGATGTCCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCGA-AG-TTCTTTAAA
Reference ( family-614 ) : CTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TT---AC-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---GN--GCAA--TATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGATTG--NTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---T-------GCACGTTTGAGAAGTTCAGTTTTAGCCTTNGGATGCATGATGTCCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCGA-AG-TTCTTTAAA
gi|1 : CTTTATTT-AGAGAAGATAAA-------------------------TATAAATATTATTTTAAATGAGGCCCTCTA-AA-AACGTTTTTAAAATCAATAATATGAACTCACGA-TT---AC-AA--TA----TATT------TT-A--C----CT---A-----A-----TAC---------ATA----CCTGCTAAAAGCAATA-CCA-TAT------TAACAATAACA--AA---GT--ACAA--CATTTCATTTTCAGGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-CAAAAGTAGCA-------AAGTTATTCAGTTTTCTGATTG--GAG-ATGGT---TTAT-CGTTACATAGCAGAATTTCATAGCAGAATAATAA------------------------------AGTTTTAGTCTTAGAATTCATGATGTCTTTGTTTGAAATCGAGCGTAGATTATATCAAGTGTTAATAAGAATCTAAATAAGG-TTCC--ATATA----------ACGAAGGTGCTAAATTGTAAATGAATTTCTGGGAATAATGC-AA---------------AA----ATGC------CA--ATATGATATTTCCTCCTGTCAGGAAATGATAAAAAACGA-AG-TTCTTTAAA
gi|10 : gtCTTTATTT-AGAGAGGGTTAG-C-TCTTTAAGTTATATATACA--ATATAAATCTTATTTTCAATGAGGCTGTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TT---AC-AA--TG----T--T------TT-A--C----AT---A-----AT-CTATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAGTGACA--AT---GA--GCAA--TATTTTATTTTCATGCGAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCT-------ACGTTATTCAGTTTTCTGATTG--GTG-AAGGT---ATAT-TGTT-C----CTGACTTCCATAGCAGAATAAGAAAA---T-------ACATGTTTAAGAAGTTCAGTTTTAGTCTTTGGATGCATAATGTCCTTGTTTGAAATTGAGCGTAGATTATAGTGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TGTGAAGGTACTAAATTATTTATTGCTTT-----A--AATAC-AA---------------AA----ACGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCTA-AG-TTCTTTAAAaagtcaaatagatggtgttttatatggcgcatccaatatgagtctagcagatttcgtctgtattttaagtatcacatcagtataagaaagtgtaccagtaccccaaatagccaagcaatggtccaatgtaggcattgtaatataaaaaattattatcaaaatttaagtatttagatagtctaaggagacatagttttgaatttagttcatcactttactgacctgtgtgttccagctcaatggctcatcaataaatgagccaagtaggttttgacatcttacatgtttgatttggaagttgctgactgaaattcataaatttccataatttctaaatttgatatgtgtacctaaaagcatatcggtagttttattagatttaaaattatattattatttttacacaaacttttatttttttgtaacattttttttcaatacgtggcgattactaccatgattagttgcacatgccaacatttgaatcatcaaccgccatcgaaggttagataacataaatcaagaaaagtagaggacctaaagtggaaccttgccgccaaaaaacggccagaatgaatggtacctaatttaacaatttgactgttttttagttaggacagagatcacagtactgtttgttctgtaaaatgacattatcgtctactaaaccaatgccataagtatatccataaacagtatcccgacacttttcccagaatcaatttcctttatcaatttgtcagttataaatgttagggcaat
gi|11 : AACACATT-AAAATTGATAATGA-----CAAGA-TT---A---------------T------TT-AGAC----AT---ATAGATAA-CGA-----AGAGCAGATA----CCTGCTAAA-TCCACATCTA-TGT------TAGCAATGGCA--AA---AAATGTAA--AATCT----TTCATGAGAAAGATAGTA--AGCAATTCGAAATTCTTTGCACACATATT-TAAAAGTAACATTTTTTTATTTTATTCAGTTGTCAGATT---TTGAAAGAT---ATATCTGT-------CAGA
gi|12 : aaACATTTACAATCAATAATAT-----CAAGA-TT---AC-AA--TGAAAAT--G------TTGA--C----AT---A-----TT-AAATATTTGAAGCAGATA----CCTGTTAAA-TAAATA-TAAATGT------TTACAATGGCA--AACATGC--ACAA--TTTATCAATTTCATGAGAA-GCT-AATTTAATAATCAGAAATTCTGTATTCAGATATT-TAAAAGTAGCA-------ATGTTATTCAGTTATCTTATTA--ATT-GAGGT---ATAT-TGTT-C----CAGATTTCTTTGGCAGAATAAGATAA---T-------GAAAGTGTG-----TTAAGTT----CCTTTG--TGCATAATGTCCTTGTTTGATATGGAGCGTAGATTATAGCGAGTAATAATAAGTATCTTATTAAGG-GAGC--ATATA---------CATGAACATACTAAATTGTTAATTGCTTT-----A--AAAAT-AAC--------------AATT--ATGC------CA--GAATGATATTTTATCCTGTCAAGAAATGATAAaaagattgagaatcagtgtttttacaaagttcaatgtagggagctttatatgccgacctcagtctagcagcattaagtatcatattagtatttaaaatcgtaccagtaccaaacagttgaccaatagtcaaatgtagattgaatataagcactgtagaacaaatgtttcattctagtatttaatcatataatagacataactatgaactt
gi|14 : CTTCATTT-AGAGATGGAAAA-C-TCATTAAGCTTTACACACA--ATATAAATCTTATTTTCAAT---------------AACACATTTAAAATCAATAATAT-----CAAGA-TT---AC-AA--TA----T--T------CT-A--C----AT---A-----AA-CAATATTTGGAGCAGATAGA--TTTGCTGAAATCAATA-CAA-TGA------TAACAGTGATA--AA---GT--ACAA--TATTTCAATTTCATGAAAAAGAT-GTTTTAGTAATCAGAGATTCTTTTTACAC-------------------------CG--------TTTTCTGATCA--ATG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---T-------GCATGTTTGAGTAGTTAAGTTTTAGCCTTAGGATGCATGATGCCCCCGTTTGAAATTAAGTGTAGATTAactttt
gi|15 : taataaatattaatgaataatttCTTTATTT-AGAGTGGGTAAA-C-TCCTTAAGTTTTATATACA--ATATAAATATTATTTTCAACAATGCCCTCTG-AATAACACATTTTAAATCAATAACAT-----CAAAA-TA---AC-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---GT--GC--------------------GAAAGAT-GTTTTAGTAATCAGAAATTCTTCATACACATATT-TAAAAGTAGCT-------AAGTTATTCAGTATTCTGATTG--TTG-AAGGC---ATAT-TGTT-C----CAGACTTCCATAGCAATATAAGAAAA---T-------GCATGTTTAAGAAGTTCAGTTTTAGC
gi|16 : aataataataataatgtCTTTATTC-AGAGAGGCTAAA-C-TCATTAAGTTTTATATACA--ATTTAAATTTTATTTT-AATGAGGCCCTCTG-AATAACACACTATATATCAATTATAT-----CAAGA-TT---AC-AA--TG----T--T------TT-G--C----AT---G-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAGTGACA--AA---GT--ACAA--TATTTCATTTTCATGCGAAAGAT-GTTTTTGTAATCAGAAAACATTTGTTCACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGGTCG--ATG-AAGGT---ATAT-TGCT-C----CAAACTTCCATGGTAGAATAAGAAAA---T-------GC
gi|17 : taataatatCTTCACTT-AAAGAGGGTAAAAC-TCATTTAGTTTTATATACA--AAATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TT---GC-AA--TG----T--T------TT-A--C----AT---A-----AAACAATATTTGGAGAAGATA----CCT---AAAATCCATA-CAA-TGT------TAACAATGACA--AA---GT--ACAA--TATTTCATTTTCACGAGAAAGGT-GCTTTTGTAATCAGAAATTCTTTTCACACATATT-TAAAAGAAGCA-------ACATTATTCAGTTTTCTGATTG--ATG-AATGT---ATAG-TGTT-C----CAGACTTTCA
gi|18 : aataatgataatgtCTTTATTT-AGAGAGGG-AAA-TGTAATTAAGTTTTATATACACAATATAAAT---ATTTTCAATGATGTACTCTG-AATAACACATTTAAAATCAATACTAT-----GAAGC-TT---CC-AA--TG----T--T------TT-A--C----AT---A-----A--CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGAC---AA---GT--ACAA--TATTT-ATTTTCATGCGAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATCAAAAAAGTAGCG-------ACGTTATTCAGgattag
gi|19 : TCAAAATCAATAATAT-----CAAGA-TT--------------------------TT-A--C----AT---A-----AA-CCATATTTG-AGAAGATA----CCTGCCAAAATCAATA-CAA-TGT------TAACAATGACA--AA---GA--ACAA--TATTTCATTTTTATGAGAGAGAT-ATTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGTA-------ATCTAAATCAGTTTTCTGATTG--ATG-AAGGT---ATAT-TGTT-C----CAATCTTCAATAGCAGAAgaaagtatttagtagaaggtaacgtctcatactt
gi|2 : aaatgatattgggtaatgtaaaatgaaaatacatttagagaaggttaagttttatatacaaggtaactcCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATTTTATTTTCAATGAGGCCCTCTG-AATAACACATATAAAATCAAGCATAC-----CAAGA-TT---AC-AA--TG----T--T------TA-A--C----AT---A-----AAACAATATTTTGAGCAGAAA----CCT------------A-CAA-TGT------TAACATTGACA--AA---GA--GCAA--TATTTTATTTTCATGCGAAAGAC-GTTT-AGTTATCAGAAATTCTTTGTACACATATT-TTAAAGTAGCT-------ACGTTATTTAGTTTTCTGATTG--TTG-AAGGT---AAAT-TGTT-C----CAAACTTCCATAGCAGAATAAGAAAA---T-------GCACATTTAAGAAGTTCAGTTTTAGCTTTTGGATGCATAATGTCCTTGTTTGGAATTGAG-------------GAGTGTTAATGGGTATTTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTATTTATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCTAGAG-TTCTTTAAA
gi|20 : ATTTTGTTCTTCCAGGAAATGATAACCATCGttttttaaaagaatgtgttttatatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagatatacgtctaaatagatataattttgaatttagtttatcacatattttactgacttgtatgttccaacttaatgtttcatcaataaataagccaagaaggttttgacatctttcatgtttgatttgtgaattgttgactgaaatacataattacccagaatgtttaattcaatacatgtagttatgtacctataatcatacatgtagttttgttatatnnnnnnnnnntttgttatatgtagttatgtacctataatcatacatgtagttttgtttcaatttgccataaatgacaatcactaaccatcggcgtacatgtcaacagatgagtcaccaacaaccatca
gi|21 : CAATAATAA-----TAATA------AT-AA--TG----T--T------TT-A--C----AT---C-----AA-CAATATTTGGAGCAGATA----CCTGCCAAAATCATAA-CAA-TGT------TAACAATGACA--AA---GT--ACAA--TATTTCATTTTTATGAGAAAGTT-GTTTTAGTAATCAGAAATTATTTGTACACATATT-TAAAAATAGCA-------ACGTTATTCAGTTTTCTGATTG--TTG-AAGGT---ATAT-TGTT-C----CAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagatatacgtctaaacaaatataattttgattttagttgat
gi|22 : gtttatataattttgtacattagtctaagtttatgtagacttaatataccaacaaCTTTATTT-AGAAAGGGTATT-C-TCATAACATTTTATATACA--ATATAAATCCTATTTTCATTGAGACGCTCTGCAAT--CAAGTTTACAGTAAAGCATAT-----TAA----T---A-------G----T--T------TT-G--CCATTAT---A-----AA-C--TGTTTAGAGAAGATAAAAGTCTGCTACAA
gi|23 : atatgaaaataatatGAGCAGATA----CCTGCAAAAATAAATA-CAT-TCT------TAACAATGACA-------GT--GTAAAGTTTTTAATTTTCATGAAACA-----TTTTAGTAATCAGAAATTATGTGTACATGTATT-TGAAAGTAGAA-------ACGTTATTCAGTTTTCTGATTT--GTGTAATG----ATAA-TGTT-C----CATACTTCCATAGAAGAATAAG-AAA---T-------ACACGTTTGAGAAGTTCAGTTTTAGgtaaacctattgcatggtggttatcaaaataatgaaatctggatactattatgctctttaaattacacaaacatgtttcagtcacaaaa
gi|24 : catcaaaactataaaCTTTATCT-AGAGAGGGTAA--C-TCATTAAGTTTTAAATACA--ATATAAATCTCATTTTCAAAGAGGTCCTCTC-AATAACACATTTAAAATCAATAGTAT-----CAAGA-TT---AA-AAATTA----T--T------TT-A--C----AT---A-----TT-CAATATTTGGAGCAATTA----CATCCTAAAATCAATA-CAG-TGT------TAAC--TG------A---GT--ACAA--TATTTCATTTTCAT
gi|25 : ataatattgataataataatgtCACGATGACATTGTTTGAAATCGAGCGTAGATTGTAGCCAGTGTTAATGGGTATCTTAATAAGA-TTAC--ATATA---------TATAACGGTACTTAATTATTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGACAATTTATTCTGTAAGtaagc
gi|26 : gtttattttaaattctgtttaaaCTTTATTA-AGAGAGAGTAAA-C-TAATTAAGTTTTATATACA--ATATAAATTTTATTTTCAATGAGTCTTTCTA-AATACCACATTTAAAATTAATAATAT-----CAAGA-TT---AC-AA--AA----T--TAAAATCTT-A--C----TT---A-----TG-AAGTATTTGGAGCAGATA----CCTGCT-AAATTAATA--AA-TAT------TAACAATGACA--AA---Gtctataattataaagaacgttactttcatacagttactttaaaattgataaaa
gi|27 : gtCTTTATTT-AGAGAGTGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATATCAATTTCAACGAGGCTCTCatgtacaa
gi|29 : taataattataatcatgataatagtgtTTT-CGAGAGGG-AAA-C-TCATAAAGTTTTAGATACA--ATATAAATCGTATTTTCAATGAGACCCTCTT-AAT-GTA-ATTTAAAATCAATAAATT-----CAGGATTT---AC-AA--TG----T--T------TT-A--C----AT---A-----TA-AAATACTTGGAGCAGATA----CCTGCTAAAATCacatatggcattcatccgattacaatattgttttgaatatttgaatggacaagtgtttgtattatagagtttct
gi|3 : aataataataacaataaatctCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTCTTTTACACA--ATTTAAATCTTATTTTCAATGAGGTCATTTG-AATAACACATTTATAATCAATAATAT-----CAAGA-TT---AT-AA--TG----T--T------TT-A--------T---A-----AA-CAATATTTGGAGCAGATA----CCTGTTAAAATCTATT-GAA-TAT------TAACAATGACA--AA---AT--GCAC--TATTTTATTTTCACGCGAAAGAT-GTTTTGGTGATCAGAAATTCTGTGTACACATATT-TAAAAGTAGCT-------ACGTTTTTCAGTTTTCTGACTG--TTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---T-------GCACGTTTAGGAAGTTTA-----AGGCTTTGGATGCATAATGTCCTTGTTTGAAATTGAG-------------AAGTGTTAATGGGTATCTTAATATGG-TTAC--ATAGA---------TACGAAGATACTAAATTATTAATTACTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATACGATATTTTATTCTGTCAGGAAATGTTAACCATCTA-AGTTTTTTTAAA
gi|31 : taataataatgtTGATTG--GTG-AAGGT---ATAT-TGTT-C----CAGATGTCAATAGCAGACTATGAAAA---T-------GCACGTTTGAAAAGTTCAGTTTTAGCCTTAAGGTGCATGTTGTTCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTCATAGGTATTTaagttcaagataaaagaaggtgttttatatgttgcatccaatatgagtctacttgaagctttttctgtattttaagtatgttattgatataacaaagtgtaccagtaccccaaataatcggacaattgaccaatgtaggctgaatatacgcattgtagaataaacattccattt
gi|32 : -AGAGACGGTCAA-C-TT-CTAAGTTTTATATACA--ATATAAATCTTATTTTCAACCAGGCCTTCTG-TATAACACATATAAAGTCTATGATAT-----CAAGA-TT---ACAAA--TA----T--T------TT-G-------AC---A-----AA-C--TATTTGGAGCAGATA----CCTGCT
gi|35 : AAA-G-TCATTAAGTTTTATATACA--ACATAAATCTTATTTTCAATGAAGCCCTCTA-AATAACACAT
gi|36 : gtcacttataataataaCTTTATTT-AGAGAGGATTAA-C-GCATTTAG--TTATATACA--AAATAAACATTATGTT
gi|37 : ataatgataataataaaaatgcTGAGAAGTTCAGTTTTTGTTTTAAGGTGCACGGTGTTATTGTTTGATATAGGGCGTTAATAATAG
gi|38 : CTTTATTT-AGACAGGGTAAA-T-GCATTTAGTTTTATAAACA--ATGT
gi|4 : aaaataataacaataatatCTTTATTT-AGAGAGGATAAA-C-TCATTAAGTTGTATATACA--ATATAAATTTTAATTTCAATGAGACCCTCTG-AATAATACATATAAAATCAATAATAT-----CAGGA-TT---AC-AA--TT----T--T------TT-A--C----AT---A-----AAACAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAAAGAAA--CT---GT--GCTA--TATTTTATTTTCATGCAAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATT-CAAAAGTAGCT-------ACAATATTCAGTTTTCCGATTG--TTG-A--------------------------CTTCCATAGCAGAATAAGAAAA---T-------GCACGTTAAAGAAGTTCAGTTTTAGCCTTTGGATACATAATGTCCTTGTTTGAAATTGAGCCTAGATTATAGTGAGTGTTAATGGGTATCTTGATAAGG-TTAC--ATATA---------TAAG-ATATACTAAATTATTTGTTGCTTT-----C--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTATCAGGACATGATAACCATCTA-AG-TTCTTTAAAta
gi|40 : CTGTATTT-AGAGAGAATAAA-C-CCATTAAGTTTaagtttaaaagaaggtgttttatatggtgcatccaatatgagtctagcacctttattatgtattttaagtatcttattagtattagaaagtgtaccagtatcccaaatagtcatacaacagtccaatgtaggctgaatatacgcattgtagaataaatttttca
gi|41 : ataacactattaataataattatgtCTTTATTT-GGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--GTA
gi|42 : tgatatGT------TAACAATGGCATAAA---TT--ACAA--TATTTCAAGTTCATGGGGAAGAT-GTTTTatg
gi|43 : TTCATTC-ACAGAGGGTAAA-C-TCGTCAAGTTTTATATACA--A
gi|45 : tgataatatgGACATTTTATCCTGTCAGGAAATGATAACAATCGA-AA-TT
gi|5 : TTTATTTTAGAGAGGGCAAA-C-TTATTAAGTTATATATACA--ATATAAATCATTTTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATACTAT-----CAAGA-TT---AC-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTGAAATTCATA-CAA-TGT------TAACAATGA-A--AA---GT--GCAA--TATTTTATTTTCATGCAAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACATATATT-TAAAAGTAGCT-------TCTTTATTTAGTTTTCTGATTG--TTG-AAGGT---ATAT-TGTT-C----CAGACTTTCATAGCAGAAAGAGAAAA---T-------GCACGTTTAAGAAAATCAGTTTTAGCCTTTTGATGCATAATGTCCTTGTTTCGAATTGAGCGTAGATTATAGCAAGTATTAATGGGTATCTTAAAAAGG-TTACNNNNNNN---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N--AATACTAAATTATTAATTGCTTTAA----ATACAAAAATCACTATATGGTATTTTATTCTGTCAGGAAATGATAACCATCTA-AG-TTCTTTAAA
gi|7 : tataataagtattgtgtCTTTATTT-AGAGAGGATAAA-C-TCATAAAGTTTTATATTGT--ATATAAATCTTATTTTCAATGAGTCCCTCTG-AATAACACATTTAAAATCAGTAACAT-----CAAGA-TC---AC-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGTTACATGTAACAATGACA--AA---GT--GCAA--TATTTCATTTTCATGAGAAAGAT-GTTCTAGCAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ATATTATTCAGTTTTCTGATTA--ATA-AAGTT---GTAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAACGTTT-------GCACATTTGAGAAGTTCAGTTTTAGCCTTTGGATGCATGACGTATTTGTTTGAAATCGAGTATAAATTATAGCGAATGTTAATGGGTATCTAAATAAGG-CTAC--ACATA---------TATGTAGGTACTTAACTGTTAATTGCTTT-----A--AAAAC-AA---------------AA----ATGC------CA--ATATG--ATTTTATTCTGTCAatgtttaagagaatgactgtgttttatattgcgcatccaatatgagtctagcagctttcttctatattttaggtatctaattagtatta
gi|8 : attactactacttataataatatCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTGTATACA--ATATAAATCTTATTTTCACTGAAGCACTATG-ATTAACACATTTGAAATCAAAATTTT-----CAAGA-TTAAAAC-AA---A----T--T------TG-A--C----GA---A-----TA-CAATATTTAGAG----TA----C--------ATTAATA-CGA-CGT------TAACAATAATA--AA---G------A--TGTACAA--TTCATAAGAAAAAT-ATCTTAGTAATCAGAAATGCTTTGTACATATATT-TAAAAGTAGCA-------TCGTAATTCAGTTTTCTGATTG--TTA-ATGGTTCGATA-----T-C----TAGACTTTCATAACAGAACAAGAAAA---TGCATCAGGCACGTTTAAGAAGTTCAGATTTAGCCTTAATATGCATGATGTCTCTGTCTGAAATCGAACGTAGATTATAGCGAGTGTTAATGTATATCTTTAAAACG-TTAC--ATATA---------TATGAAAGTACTAAATTGTTAATTGCTTT-----A--AAAAC-AA---------------AACTTTGTGT------CA--TTTTGATATTTTATCATATGAGGAAATGATAACCATTGA-GG-TTCTTTAAAttaaacagtgtaaacaatagtttaaacagataaccaattatgtttgt
gi|9 : tactaataataataatgtCTTTATTT-AGATAGGGTGAA-C-GCATTAAGTTTTATACACA--ATATAAATCTTGTTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATAAATAATAT-----CAAGA-TT---AC-AA--TG----T--T------TT-A--C----ATTATA-----AA-CAATATTTGGATCAGATA----GCTGCTAAAATCAATA-CAT-TGT------TAACAAT------------------------TTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAGGTATCA-------ATGCTATTCAGTTTTGTGATTGACTTG---GGT---ATAT-TGTT-T----CAGACTTCCATAGCAGAATAAGAAAA---T-------GCACGTTTGTGAAGTTCAGTTTTTTCCTTGGGATGCATTATGTCCTTGTTTGAAATCGTGCATAGA-AATAGCCAGTGTTAATGGTTATCTTAATAAGGTTTAC--ATATGATATATAATTATGAAGGTACTTAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATTC------TA--ATATGATATTTTATTCTGTCAGGAAATGCTTACCATAGA-AG-TTCTTTAAAcagt
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTTACATGTTACTGACTTCTGTGTTCCAACCTAATGTTTCATCCCAGAATGTTTAATTTTGTTATGTGTACCTATAATTATACATGTACATGTTGTTTTATTAGGATTTAAAGTCATGTTTTTATTTGTACACCAACTTTCAATTTTTATAACATCATTTTGTAATTTTGTTTCGACTTGCCACACGTGACAATCACTAAAATGAATAGTAGATCATCGACGTATATGTCAACGCTTGAATCATCAAGAACCATCAGAAAATCATATATGAATCAAGAAAAGAAGAAGACATAGAATTGAACCTTGTGGGAAACCAGAATGAATGGTGCCTAAGTTAACACTATGGCATCTGTAGTTGGGTAGGACCACGGTGTTCACTAAACTGATACAGTTTTAATTTATGTAAGATAGTATCATGGTCTTATAAATCAAATGCCTCTCGTAGAAAAATAAACACTCCTGGCAAGTTTCCCAGAATAAATTTCTCTTACCCATTTGTGGGTTTAAATTGTTAGGGCAGTTTGGCAAGACTTTTTTTAAAGGAATCCAAATTGAATTTAATTGTATGTAATACGTCACCTATTCAACAGATAGGGGACATATATATGTACTG
Unaligned ( gi|13 ): GTGATTAAGAGTCTTGTTAGTTCTAGAAAGTGTACTAGTACCCTAGATAGTTGAGTAATAATCCAGTTAATGCTGAATATAAGCATTGTAGAATAAATTAATGTTTCATTCCAAGATTTAAGAATATAGAACTTCCTTAAAAGAGACATAGTTTGAAAGTATTAAGTTAATTTACTAACTTGAGTGTTCCAACTTAAAGTAGTTTTTAACGTTTTTGATTGGTTGACTGAAATACACAAAACTCCCGAATGTTTAAGTTTGTCACGTGTGCTTATAAGCGTACATGTAGCTTTATAAGTATATTTTACACCAACTTTCATTTTTTATATAGCCATTTTGTATTTTTGTTTGATTTACCGCACACGTGACAATCACTAACAGATAATTTTACTCAGCATTT
Unaligned ( gi|28 ): AAGGGTTAAAAAAAGGTGTTTTATATGGCACATCCAATATGAATCTAGCAACTTTCTTCTGTATTTTAAGTATCTTATCAGTATTAGAAAGTGTATCAGTACCCCGAATAGTCGAGCAATAATCCAATGTAGATATCATGGTGATGGACCTTGTTAAATTTATTTTATT
Unaligned ( gi|30 ): TATTCATAACATGCGAATAGATATACTTATCACAAAAATAAAAGTTTCAGATGGGTTTTATTTTATCAAATAAAAGTATAAAATGTCTGCTTTCTCGTGATATCTTTCCAACTTTATTTATTAAATGTTTAATTTCACAAATAATGAACAGAATAAGC
Unaligned ( gi|33 ): ATTCAAGAAAAATATGTTTCAGTAATCCCAAACAGTTGAGCAATATAGACCAACTGCAGGCTGATAATTAAAATACATCTGATGTAGACATTGTAGAATAAATGTTTCATTTCAAGATTTAAGCATA
Unaligned ( gi|34 ): AACCATCAATGGCGCCTAATTTAACACGTTGACATCTTTTTTTAGATATGACTGAAACCACTGTACTGTACGTTCAGTAAGATTATAGAGTTTCAATTCATGTAAA
Unaligned ( gi|39 ): TTAAAATATTTAATTGAAAGAGTTCAATATGGCGCATACAATATCAGTCTAGCAGCTTT
Unaligned ( gi|44 ): TCAAAATGATATGTTACCAAATTGAAAAAAACAACGAGACATA
Alignments
lowQualScore : 111111111 222222222222222 1111 111111
lowQualScore : 1 1 1 22 2 44444 1 333 1 22 3333 22 555555 1 22 3333 333 55555555 5555 1 1 555555 22 333 555 22 2 1 2 2 88888888 333 4 333 2 2 4444 444 9999999 1 0 3 55 444444444 99999 55 3 666666666666666 2222 000000 55 2 4 4
lowQualScore : . . . .. . ..... . ... . .. .... .. ...... . .. .... ... ........ .... . . ...... .. ... ... .. . . . . ........ ... . ... . . .... ... ....... . . . .. ......... ..... .. . ............... .... ...... .. . . .
lowQualScore : 6 5 5 22 0 33333 7 000 7 44 7777 44 000000 7 44 7777 000 55555555 8888 9 9 222222 55 222 777 66 1 3 0 1 11111111 999 2 777 1 1 5555 777 3333333 0 4 6 00 555555555 11111 00 6 444444444444444 7777 555555 00 5 4 4
consensus : CTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---TGCAA--TATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGATTG--NTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTGAGAAGTTCAGTTTTAGCCTTNGGATGCATGATGTCCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCGA-AG-TTCTTTAAA
Reference ( family-614 ) : CTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---TGCAA--TATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGATTG--NTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTGAGAAGTTCAGTTTTAGCCTTNGGATGCATGATGTCCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCGA-AG-TTCTTTAAA
gi|1 : CTTTATTT-AGAGAAGATAAA-------------------------TATAAATATTATTTTAAATGAGGCCCTCTA-AA-AACGTTTTTAAAATCAATAATATGAACTCACGA-TTA---C-AA--TA----TATT------TT-A--C----CT---A-----A-----TAC---------ATA----CCTGCTAAAAGCAATA-CCA-TAT------TAACAATAACA--AA---G---TACAA--CATTTCATTTTCAGGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-CAAAAGTAGCA-------AAGTTATTCAGTTTTCTGATTG--GAG-ATGGT---TTAT-CGTTACATAGCAGAATTTCATAGCAGAATAATAA------------------------------AGTTTTAGTCTTAGAATTCATGATGTCTTTGTTTGAAATCGAGCGTAGATTATATCAAGTGTTAATAAGAATCTAAATAAGG-TTCC--ATATA----------ACGAAGGTGCTAAATTGTAAATGAATTTCTGGGAATAATGC-AA---------------AA----ATGC------CA--ATATGATATTTCCTCCTGTCAGGAAATGATAAAAAACGA-AG-TTCTTTAAA
gi|10 : gtCTTTATTT-AGAGAGGGTTAG-C-TCTTTAAGTTATATATACA--ATATAAATCTTATTTTCAATGAGGCTGTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AT-CTATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAGTGACA--AT---G---AGCAA--TATTTTATTTTCATGCGAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCT-------ACGTTATTCAGTTTTCTGATTG--GTG-AAGGT---ATAT-TGTT-C----CTGACTTCCATAGCAGAATAAGAAAA---TACA-------TGTTTAAGAAGTTCAGTTTTAGTCTTTGGATGCATAATGTCCTTGTTTGAAATTGAGCGTAGATTATAGTGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TGTGAAGGTACTAAATTATTTATTGCTTT-----A--AATAC-AA---------------AA----ACGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCTA-AG-TTCTTTAAAaagtcaaatagatggtgttttatatggcgcatccaatatgagtctagcagatttcgtctgtattttaagtatcacatcagtataagaaagtgtaccagtaccccaaatagccaagcaatggtccaatgtaggcattgtaatataaaaaattattatcaaaatttaagtatttagatagtctaaggagacatagttttgaatttagttcatcactttactgacctgtgtgttccagctcaatggctcatcaataaatgagccaagtaggttttgacatcttacatgtttgatttggaagttgctgactgaaattcataaatttccataatttctaaatttgatatgtgtacctaaaagcatatcggtagttttattagatttaaaattatattattatttttacacaaacttttatttttttgtaacattttttttcaatacgtggcgattactaccatgattagttgcacatgccaacatttgaatcatcaaccgccatcgaaggttagataacataaatcaagaaaagtagaggacctaaagtggaaccttgccgccaaaaaacggccagaatgaatggtacctaatttaacaatttgactgttttttagttaggacagagatcacagtactgtttgttctgtaaaatgacattatcgtctactaaaccaatgccataagtatatccataaacagtatcccgacacttttcccagaatcaatttcctttatcaatttgtcagttataaatgttagggcaat
gi|11 : AACACATT-AAAATTGATAATGA-----CAAGA-TTA------------------T------TT-AGAC----AT---ATAGATAA-CGA-----AGAGCAGATA----CCTGCTAAA-TCCACATCTA-TGT------TAGCAATGGCA--AA---AAA-TGTAA--AATCT----TTCATGAGAAAGATAGTA--AGCAATTCGAAATTCTTTGCACACATATT-TAAAAGTAACATTTTTTTATTTTATTCAGTTGTCAGATT---TTGAAAGAT---ATATCTGT-------CAGA
gi|12 : aaACATTTACAATCAATAATAT-----CAAGA-TTA---C-AA--TGAAAAT--G------TTGA--C----AT---A-----TT-AAATATTTGAAGCAGATA----CCTGTTAAA-TAAATA-TAAATGT------TTACAATGGCA--AACATG---CACAA--TTTATCAATTTCATGAGAA-GCT-AATTTAATAATCAGAAATTCTGTATTCAGATATT-TAAAAGTAGCA-------ATGTTATTCAGTTATCTTATTA--ATT-GAGGT---ATAT-TGTT-C----CAGATTTCTTTGGCAGAATAAGATAA---TGAA-------AGTGTG-----TTAAGTT----CCTTTG--TGCATAATGTCCTTGTTTGATATGGAGCGTAGATTATAGCGAGTAATAATAAGTATCTTATTAAGG-GAGC--ATATA---------CATGAACATACTAAATTGTTAATTGCTTT-----A--AAAAT-AAC--------------AATT--ATGC------CA--GAATGATATTTTATCCTGTCAAGAAATGATAAaaagattgagaatcagtgtttttacaaagttcaatgtagggagctttatatgccgacctcagtctagcagcattaagtatcatattagtatttaaaatcgtaccagtaccaaacagttgaccaatagtcaaatgtagattgaatataagcactgtagaacaaatgtttcattctagtatttaatcatataatagacataactatgaactt
gi|14 : CTTCATTT-AGAGATGGAAAA-C-TCATTAAGCTTTACACACA--ATATAAATCTTATTTTCAAT---------------AACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TA----T--T------CT-A--C----AT---A-----AA-CAATATTTGGAGCAGATAGA--TTTGCTGAAATCAATA-CAA-TGA------TAACAGTGATA--AA---G---TACAA--TATTTCAATTTCATGAAAAAGAT-GTTTTAGTAATCAGAGATTCTTTTTACAC-------------------------CG--------TTTTCTGATCA--ATG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------TGTTTGAGTAGTTAAGTTTTAGCCTTAGGATGCATGATGCCCCCGTTTGAAATTAAGTGTAGATTAactttt
gi|15 : taataaatattaatgaataatttCTTTATTT-AGAGTGGGTAAA-C-TCCTTAAGTTTTATATACA--ATATAAATATTATTTTCAACAATGCCCTCTG-AATAACACATTTTAAATCAATAACAT-----CAAAA-TAA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---TGC--------------------GAAAGAT-GTTTTAGTAATCAGAAATTCTTCATACACATATT-TAAAAGTAGCT-------AAGTTATTCAGTATTCTGATTG--TTG-AAGGC---ATAT-TGTT-C----CAGACTTCCATAGCAATATAAGAAAA---TGCA-------TGTTTAAGAAGTTCAGTTTTAGC
gi|16 : aataataataataatgtCTTTATTC-AGAGAGGCTAAA-C-TCATTAAGTTTTATATACA--ATTTAAATTTTATTTT-AATGAGGCCCTCTG-AATAACACACTATATATCAATTATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-G--C----AT---G-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAGTGACA--AA---G---TACAA--TATTTCATTTTCATGCGAAAGAT-GTTTTTGTAATCAGAAAACATTTGTTCACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGGTCG--ATG-AAGGT---ATAT-TGCT-C----CAAACTTCCATGGTAGAATAAGAAAA---TGC
gi|17 : taataatatCTTCACTT-AAAGAGGGTAAAAC-TCATTTAGTTTTATATACA--AAATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTG---C-AA--TG----T--T------TT-A--C----AT---A-----AAACAATATTTGGAGAAGATA----CCT---AAAATCCATA-CAA-TGT------TAACAATGACA--AA---G---TACAA--TATTTCATTTTCACGAGAAAGGT-GCTTTTGTAATCAGAAATTCTTTTCACACATATT-TAAAAGAAGCA-------ACATTATTCAGTTTTCTGATTG--ATG-AATGT---ATAG-TGTT-C----CAGACTTTCA
gi|18 : aataatgataatgtCTTTATTT-AGAGAGGG-AAA-TGTAATTAAGTTTTATATACACAATATAAAT---ATTTTCAATGATGTACTCTG-AATAACACATTTAAAATCAATACTAT-----GAAGC-TTC---C-AA--TG----T--T------TT-A--C----AT---A-----A--CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGAC---AA---G---TACAA--TATTT-ATTTTCATGCGAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATCAAAAAAGTAGCG-------ACGTTATTCAGgattag
gi|19 : TCAAAATCAATAATAT-----CAAGA-TT--------------------------TT-A--C----AT---A-----AA-CCATATTTG-AGAAGATA----CCTGCCAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---AACAA--TATTTCATTTTTATGAGAGAGAT-ATTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGTA-------ATCTAAATCAGTTTTCTGATTG--ATG-AAGGT---ATAT-TGTT-C----CAATCTTCAATAGCAGAAgaaagtatttagtagaaggtaacgtctcatactt
gi|2 : aaatgatattgggtaatgtaaaatgaaaatacatttagagaaggttaagttttatatacaaggtaactcCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATTTTATTTTCAATGAGGCCCTCTG-AATAACACATATAAAATCAAGCATAC-----CAAGA-TTA---C-AA--TG----T--T------TA-A--C----AT---A-----AAACAATATTTTGAGCAGAAA----CCT------------A-CAA-TGT------TAACATTGACA--AA---G---AGCAA--TATTTTATTTTCATGCGAAAGAC-GTTT-AGTTATCAGAAATTCTTTGTACACATATT-TTAAAGTAGCT-------ACGTTATTTAGTTTTCTGATTG--TTG-AAGGT---AAAT-TGTT-C----CAAACTTCCATAGCAGAATAAGAAAA---TGCA-------CATTTAAGAAGTTCAGTTTTAGCTTTTGGATGCATAATGTCCTTGTTTGGAATTGAG-------------GAGTGTTAATGGGTATTTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTATTTATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCTAGAG-TTCTTTAAA
gi|20 : ATTTTGTTCTTCCAGGAAATGATAACCATCGttttttaaaagaatgtgttttatatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagatatacgtctaaatagatataattttgaatttagtttatcacatattttactgacttgtatgttccaacttaatgtttcatcaataaataagccaagaaggttttgacatctttcatgtttgatttgtgaattgttgactgaaatacataattacccagaatgtttaattcaatacatgtagttatgtacctataatcatacatgtagttttgttatatnnnnnnnnnntttgttatatgtagttatgtacctataatcatacatgtagttttgtttcaatttgccataaatgacaatcactaaccatcggcgtacatgtcaacagatgagtcaccaacaaccatca
gi|21 : CAATAATAA-----TAATA---A---T-AA--TG----T--T------TT-A--C----AT---C-----AA-CAATATTTGGAGCAGATA----CCTGCCAAAATCATAA-CAA-TGT------TAACAATGACA--AA---G---TACAA--TATTTCATTTTTATGAGAAAGTT-GTTTTAGTAATCAGAAATTATTTGTACACATATT-TAAAAATAGCA-------ACGTTATTCAGTTTTCTGATTG--TTG-AAGGT---ATAT-TGTT-C----CAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagatatacgtctaaacaaatataattttgattttagttgat
gi|22 : gtttatataattttgtacattagtctaagtttatgtagacttaatataccaacaaCTTTATTT-AGAAAGGGTATT-C-TCATAACATTTTATATACA--ATATAAATCCTATTTTCATTGAGACGCTCTGCAAT--CAAGTTTACAGTAAAGCATAT-----TAA----TA----------G----T--T------TT-G--CCATTAT---A-----AA-C--TGTTTAGAGAAGATAAAAGTCTGCTACAA
gi|23 : atatgaaaataatatGAGCAGATA----CCTGCAAAAATAAATA-CAT-TCT------TAACAATGACA-------G---TGTAAAGTTTTTAATTTTCATGAAACA-----TTTTAGTAATCAGAAATTATGTGTACATGTATT-TGAAAGTAGAA-------ACGTTATTCAGTTTTCTGATTT--GTGTAATG----ATAA-TGTT-C----CATACTTCCATAGAAGAATAAG-AAA---TACA-------CGTTTGAGAAGTTCAGTTTTAGgtaaacctattgcatggtggttatcaaaataatgaaatctggatactattatgctctttaaattacacaaacatgtttcagtcacaaaa
gi|24 : catcaaaactataaaCTTTATCT-AGAGAGGGTAA--C-TCATTAAGTTTTAAATACA--ATATAAATCTCATTTTCAAAGAGGTCCTCTC-AATAACACATTTAAAATCAATAGTAT-----CAAGA-TTA---A-AAATTA----T--T------TT-A--C----AT---A-----TT-CAATATTTGGAGCAATTA----CATCCTAAAATCAATA-CAG-TGT------TAAC--TG------A---G---TACAA--TATTTCATTTTCAT
gi|25 : ataatattgataataataatgtCACGATGACATTGTTTGAAATCGAGCGTAGATTGTAGCCAGTGTTAATGGGTATCTTAATAAGA-TTAC--ATATA---------TATAACGGTACTTAATTATTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGACAATTTATTCTGTAAGtaagc
gi|26 : gtttattttaaattctgtttaaaCTTTATTA-AGAGAGAGTAAA-C-TAATTAAGTTTTATATACA--ATATAAATTTTATTTTCAATGAGTCTTTCTA-AATACCACATTTAAAATTAATAATAT-----CAAGA-TTA---C-AA--AA----T--TAAAATCTT-A--C----TT---A-----TG-AAGTATTTGGAGCAGATA----CCTGCT-AAATTAATA--AA-TAT------TAACAATGACA--AA---G---tctataattataaagaacgttactttcatacagttactttaaaattgataaaa
gi|27 : gtCTTTATTT-AGAGAGTGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATATCAATTTCAACGAGGCTCTCatgtacaa
gi|29 : taataattataatcatgataatagtgtTTT-CGAGAGGG-AAA-C-TCATAAAGTTTTAGATACA--ATATAAATCGTATTTTCAATGAGACCCTCTT-AAT-GTA-ATTTAAAATCAATAAATT-----CAGGATTTA---C-AA--TG----T--T------TT-A--C----AT---A-----TA-AAATACTTGGAGCAGATA----CCTGCTAAAATCacatatggcattcatccgattacaatattgttttgaatatttgaatggacaagtgtttgtattatagagtttct
gi|3 : aataataataacaataaatctCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTCTTTTACACA--ATTTAAATCTTATTTTCAATGAGGTCATTTG-AATAACACATTTATAATCAATAATAT-----CAAGA-TTA---T-AA--TG----T--T------TT-A--------T---A-----AA-CAATATTTGGAGCAGATA----CCTGTTAAAATCTATT-GAA-TAT------TAACAATGACA--AA---A---TGCAC--TATTTTATTTTCACGCGAAAGAT-GTTTTGGTGATCAGAAATTCTGTGTACACATATT-TAAAAGTAGCT-------ACGTTTTTCAGTTTTCTGACTG--TTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTAGGAAGTTTA-----AGGCTTTGGATGCATAATGTCCTTGTTTGAAATTGAG-------------AAGTGTTAATGGGTATCTTAATATGG-TTAC--ATAGA---------TACGAAGATACTAAATTATTAATTACTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATACGATATTTTATTCTGTCAGGAAATGTTAACCATCTA-AGTTTTTTTAAA
gi|31 : taataataatgtTGATTG--GTG-AAGGT---ATAT-TGTT-C----CAGATGTCAATAGCAGACTATGAAAA---TGCA-------CGTTTGAAAAGTTCAGTTTTAGCCTTAAGGTGCATGTTGTTCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTCATAGGTATTTaagttcaagataaaagaaggtgttttatatgttgcatccaatatgagtctacttgaagctttttctgtattttaagtatgttattgatataacaaagtgtaccagtaccccaaataatcggacaattgaccaatgtaggctgaatatacgcattgtagaataaacattccattt
gi|32 : -AGAGACGGTCAA-C-TT-CTAAGTTTTATATACA--ATATAAATCTTATTTTCAACCAGGCCTTCTG-TATAACACATATAAAGTCTATGATAT-----CAAGA-TTA---CAAA--TA----T--T------TT-G-------AC---A-----AA-C--TATTTGGAGCAGATA----CCTGCT
gi|35 : AAA-G-TCATTAAGTTTTATATACA--ACATAAATCTTATTTTCAATGAAGCCCTCTA-AATAACACAT
gi|36 : gtcacttataataataaCTTTATTT-AGAGAGGATTAA-C-GCATTTAG--TTATATACA--AAATAAACATTATGTT
gi|37 : ataatgataataataaaaatgcTGAGAAGTTCAGTTTTTGTTTTAAGGTGCACGGTGTTATTGTTTGATATAGGGCGTTAATAATAG
gi|38 : CTTTATTT-AGACAGGGTAAA-T-GCATTTAGTTTTATAAACA--ATGT
gi|4 : aaaataataacaataatatCTTTATTT-AGAGAGGATAAA-C-TCATTAAGTTGTATATACA--ATATAAATTTTAATTTCAATGAGACCCTCTG-AATAATACATATAAAATCAATAATAT-----CAGGA-TTA---C-AA--TT----T--T------TT-A--C----AT---A-----AAACAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAAAGAAA--CT---G---TGCTA--TATTTTATTTTCATGCAAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATT-CAAAAGTAGCT-------ACAATATTCAGTTTTCCGATTG--TT---------------------------GACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTAAAGAAGTTCAGTTTTAGCCTTTGGATACATAATGTCCTTGTTTGAAATTGAGCCTAGATTATAGTGAGTGTTAATGGGTATCTTGATAAGG-TTAC--ATATA---------TAAG-ATATACTAAATTATTTGTTGCTTT-----C--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTATCAGGACATGATAACCATCTA-AG-TTCTTTAAAta
gi|40 : CTGTATTT-AGAGAGAATAAA-C-CCATTAAGTTTaagtttaaaagaaggtgttttatatggtgcatccaatatgagtctagcacctttattatgtattttaagtatcttattagtattagaaagtgtaccagtatcccaaatagtcatacaacagtccaatgtaggctgaatatacgcattgtagaataaatttttca
gi|41 : ataacactattaataataattatgtCTTTATTT-GGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--GTA
gi|42 : tgatatGT------TAACAATGGCATAAA---T---TACAA--TATTTCAAGTTCATGGGGAAGAT-GTTTTatg
gi|43 : TTCATTC-ACAGAGGGTAAA-C-TCGTCAAGTTTTATATACA--A
gi|45 : tgataatatgGACATTTTATCCTGTCAGGAAATGATAACAATCGA-AA-TT
gi|5 : TTTATTTTAGAGAGGGCAAA-C-TTATTAAGTTATATATACA--ATATAAATCATTTTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATACTAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTGAAATTCATA-CAA-TGT------TAACAATGA-A--AA---G---TGCAA--TATTTTATTTTCATGCAAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACATATATT-TAAAAGTAGCT-------TCTTTATTTAGTTTTCTGATTG--TTG-AAGGT---ATAT-TGTT-C----CAGACTTTCATAGCAGAAAGAGAAAA---TGCA-------CGTTTAAGAAAATCAGTTTTAGCCTTTTGATGCATAATGTCCTTGTTTCGAATTGAGCGTAGATTATAGCAAGTATTAATGGGTATCTTAAAAAGG-TTACNNNNNNN---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N--AATACTAAATTATTAATTGCTTTAA----ATACAAAAATCACTATATGGTATTTTATTCTGTCAGGAAATGATAACCATCTA-AG-TTCTTTAAA
gi|7 : tataataagtattgtgtCTTTATTT-AGAGAGGATAAA-C-TCATAAAGTTTTATATTGT--ATATAAATCTTATTTTCAATGAGTCCCTCTG-AATAACACATTTAAAATCAGTAACAT-----CAAGA-TCA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGTTACATGTAACAATGACA--AA---G---TGCAA--TATTTCATTTTCATGAGAAAGAT-GTTCTAGCAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ATATTATTCAGTTTTCTGATTA--ATA-AAGTT---GTAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAACGTTTGCA-------CATTTGAGAAGTTCAGTTTTAGCCTTTGGATGCATGACGTATTTGTTTGAAATCGAGTATAAATTATAGCGAATGTTAATGGGTATCTAAATAAGG-CTAC--ACATA---------TATGTAGGTACTTAACTGTTAATTGCTTT-----A--AAAAC-AA---------------AA----ATGC------CA--ATATG--ATTTTATTCTGTCAatgtttaagagaatgactgtgttttatattgcgcatccaatatgagtctagcagctttcttctatattttaggtatctaattagtatta
gi|8 : attactactacttataataatatCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTGTATACA--ATATAAATCTTATTTTCACTGAAGCACTATG-ATTAACACATTTGAAATCAAAATTTT-----CAAGA-TTAAAAC-AA---A----T--T------TG-A--C----GA---A-----TA-CAATATTTAGAG----TA----C--------ATTAATA-CGA-CGT------TAACAATAATA--AA---GATGTACAA--T---------TCATAAGAAAAAT-ATCTTAGTAATCAGAAATGCTTTGTACATATATT-TAAAAGTAGCA-------TCGTAATTCAGTTTTCTGATTG--TTA-ATGGTTCGATAT------C----TAGACTTTCATAACAGAACAAGAAAA---TGCATCAGGCACGTTTAAGAAGTTCAGATTTAGCCTTAATATGCATGATGTCTCTGTCTGAAATCGAACGTAGATTATAGCGAGTGTTAATGTATATCTTTAAAACG-TTAC--ATATA---------TATGAAAGTACTAAATTGTTAATTGCTTT-----A--AAAAC-AA---------------AACTTTGTGT------CA--TTTTGATATTTTATCATATGAGGAAATGATAACCATTGA-GG-TTCTTTAAAttaaacagtgtaaacaatagtttaaacagataaccaattatgtttgt
gi|9 : tactaataataataatgtCTTTATTT-AGATAGGGTGAA-C-GCATTAAGTTTTATACACA--ATATAAATCTTGTTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATAAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----ATTATA-----AA-CAATATTTGGATCAGATA----GCTGCTAAAATCAATA-CAT-TGT------TAACAAT-------------------------TTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAGGTATCA-------ATGCTATTCAGTTTTGTGATTGACTTG---GGT---ATAT-TGTT-T----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTGTGAAGTTCAGTTTTTTCCTTGGGATGCATTATGTCCTTGTTTGAAATCGTGCATAGA-AATAGCCAGTGTTAATGGTTATCTTAATAAGGTTTAC--ATATGATATATAATTATGAAGGTACTTAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATTC------TA--ATATGATATTTTATTCTGTCAGGAAATGCTTACCATAGA-AG-TTCTTTAAAcagt
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTTACATGTTACTGACTTCTGTGTTCCAACCTAATGTTTCATCCCAGAATGTTTAATTTTGTTATGTGTACCTATAATTATACATGTACATGTTGTTTTATTAGGATTTAAAGTCATGTTTTTATTTGTACACCAACTTTCAATTTTTATAACATCATTTTGTAATTTTGTTTCGACTTGCCACACGTGACAATCACTAAAATGAATAGTAGATCATCGACGTATATGTCAACGCTTGAATCATCAAGAACCATCAGAAAATCATATATGAATCAAGAAAAGAAGAAGACATAGAATTGAACCTTGTGGGAAACCAGAATGAATGGTGCCTAAGTTAACACTATGGCATCTGTAGTTGGGTAGGACCACGGTGTTCACTAAACTGATACAGTTTTAATTTATGTAAGATAGTATCATGGTCTTATAAATCAAATGCCTCTCGTAGAAAAATAAACACTCCTGGCAAGTTTCCCAGAATAAATTTCTCTTACCCATTTGTGGGTTTAAATTGTTAGGGCAGTTTGGCAAGACTTTTTTTAAAGGAATCCAAATTGAATTTAATTGTATGTAATACGTCACCTATTCAACAGATAGGGGACATATATATGTACTG
Unaligned ( gi|13 ): GTGATTAAGAGTCTTGTTAGTTCTAGAAAGTGTACTAGTACCCTAGATAGTTGAGTAATAATCCAGTTAATGCTGAATATAAGCATTGTAGAATAAATTAATGTTTCATTCCAAGATTTAAGAATATAGAACTTCCTTAAAAGAGACATAGTTTGAAAGTATTAAGTTAATTTACTAACTTGAGTGTTCCAACTTAAAGTAGTTTTTAACGTTTTTGATTGGTTGACTGAAATACACAAAACTCCCGAATGTTTAAGTTTGTCACGTGTGCTTATAAGCGTACATGTAGCTTTATAAGTATATTTTACACCAACTTTCATTTTTTATATAGCCATTTTGTATTTTTGTTTGATTTACCGCACACGTGACAATCACTAACAGATAATTTTACTCAGCATTT
Unaligned ( gi|28 ): AAGGGTTAAAAAAAGGTGTTTTATATGGCACATCCAATATGAATCTAGCAACTTTCTTCTGTATTTTAAGTATCTTATCAGTATTAGAAAGTGTATCAGTACCCCGAATAGTCGAGCAATAATCCAATGTAGATATCATGGTGATGGACCTTGTTAAATTTATTTTATT
Unaligned ( gi|30 ): TATTCATAACATGCGAATAGATATACTTATCACAAAAATAAAAGTTTCAGATGGGTTTTATTTTATCAAATAAAAGTATAAAATGTCTGCTTTCTCGTGATATCTTTCCAACTTTATTTATTAAATGTTTAATTTCACAAATAATGAACAGAATAAGC
Unaligned ( gi|33 ): ATTCAAGAAAAATATGTTTCAGTAATCCCAAACAGTTGAGCAATATAGACCAACTGCAGGCTGATAATTAAAATACATCTGATGTAGACATTGTAGAATAAATGTTTCATTTCAAGATTTAAGCATA
Unaligned ( gi|34 ): AACCATCAATGGCGCCTAATTTAACACGTTGACATCTTTTTTTAGATATGACTGAAACCACTGTACTGTACGTTCAGTAAGATTATAGAGTTTCAATTCATGTAAA
Unaligned ( gi|39 ): TTAAAATATTTAATTGAAAGAGTTCAATATGGCGCATACAATATCAGTCTAGCAGCTTT
Unaligned ( gi|44 ): TCAAAATGATATGTTACCAAATTGAAAAAAACAACGAGACATA
Alignments
lowQualScore : 111111111 222222222222222 1111 111111
lowQualScore : 1 1 1 22 2 44444 1 333 1 22 3333 22 555555 1 22 3333 333 55555555 5555 1 1 555555 22 333 555 22 2 1 2 2 88888888 333 4 333 2 2 4444 444 9999999 1 0 3 55 444444444 99999 55 3 666666666666666 2222 000000 55 2 4 4
lowQualScore : . . . .. . ..... . ... . .. .... .. ...... . .. .... ... ........ .... . . ...... .. ... ... .. . . . . ........ ... . ... . . .... ... ....... . . . .. ......... ..... .. . ............... .... ...... .. . . .
lowQualScore : 6 5 5 22 0 33333 7 000 7 44 7777 44 000000 7 44 7777 000 55555555 8888 9 9 222222 55 222 777 66 1 3 0 1 11111111 999 2 777 1 1 5555 777 3333333 0 4 6 00 555555555 11111 00 6 444444444444444 7777 555555 00 5 4 4
consensus : CTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---TGCAA--TATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGATTG--NTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTGAGAAGTTCAGTTTTAGCCTTNGGATGCATGATGTCCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCGA-AG-TTCTTTAAA
Reference ( family-614 ) : CTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---TGCAA--TATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGATTG--NTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTGAGAAGTTCAGTTTTAGCCTTNGGATGCATGATGTCCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCGA-AG-TTCTTTAAA
gi|1 : CTTTATTT-AGAGAAGATAAA-------------------------TATAAATATTATTTTAAATGAGGCCCTCTA-AA-AACGTTTTTAAAATCAATAATATGAACTCACGA-TTA---C-AA--TA----TATT------TT-A--C----CT---A-----A-----TAC---------ATA----CCTGCTAAAAGCAATA-CCA-TAT------TAACAATAACA--AA---G---TACAA--CATTTCATTTTCAGGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-CAAAAGTAGCA-------AAGTTATTCAGTTTTCTGATTG--GAG-ATGGT---TTAT-CGTTACATAGCAGAATTTCATAGCAGAATAATAA------------------------------AGTTTTAGTCTTAGAATTCATGATGTCTTTGTTTGAAATCGAGCGTAGATTATATCAAGTGTTAATAAGAATCTAAATAAGG-TTCC--ATATA----------ACGAAGGTGCTAAATTGTAAATGAATTTCTGGGAATAATGC-AA---------------AA----ATGC------CA--ATATGATATTTCCTCCTGTCAGGAAATGATAAAAAACGA-AG-TTCTTTAAA
gi|10 : gtCTTTATTT-AGAGAGGGTTAG-C-TCTTTAAGTTATATATACA--ATATAAATCTTATTTTCAATGAGGCTGTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AT-CTATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAGTGACA--AT---G---AGCAA--TATTTTATTTTCATGCGAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCT-------ACGTTATTCAGTTTTCTGATTG--GTG-AAGGT---ATAT-TGTT-C----CTGACTTCCATAGCAGAATAAGAAAA---TACA-------TGTTTAAGAAGTTCAGTTTTAGTCTTTGGATGCATAATGTCCTTGTTTGAAATTGAGCGTAGATTATAGTGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TGTGAAGGTACTAAATTATTTATTGCTTT-----A--AATAC-AA---------------AA----ACGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCTA-AG-TTCTTTAAAaagtcaaatagatggtgttttatatggcgcatccaatatgagtctagcagatttcgtctgtattttaagtatcacatcagtataagaaagtgtaccagtaccccaaatagccaagcaatggtccaatgtaggcattgtaatataaaaaattattatcaaaatttaagtatttagatagtctaaggagacatagttttgaatttagttcatcactttactgacctgtgtgttccagctcaatggctcatcaataaatgagccaagtaggttttgacatcttacatgtttgatttggaagttgctgactgaaattcataaatttccataatttctaaatttgatatgtgtacctaaaagcatatcggtagttttattagatttaaaattatattattatttttacacaaacttttatttttttgtaacattttttttcaatacgtggcgattactaccatgattagttgcacatgccaacatttgaatcatcaaccgccatcgaaggttagataacataaatcaagaaaagtagaggacctaaagtggaaccttgccgccaaaaaacggccagaatgaatggtacctaatttaacaatttgactgttttttagttaggacagagatcacagtactgtttgttctgtaaaatgacattatcgtctactaaaccaatgccataagtatatccataaacagtatcccgacacttttcccagaatcaatttcctttatcaatttgtcagttataaatgttagggcaat
gi|11 : AACACATT-AAAATTGATAATGA-----CAAGA-TTA------------------T------TT-AGAC----AT---ATAGATAA-CGA-----AGAGCAGATA----CCTGCTAAA-TCCACATCTA-TGT------TAGCAATGGCA--AA---AAA-TGTAA--AATCT----TTCATGAGAAAGATAGTA--AGCAATTCGAAATTCTTTGCACACATATT-TAAAAGTAACATTTTTTTATTTTATTCAGTTGTCAGATT---TTGAAAGAT---ATATCTGT-------CAGA
gi|12 : aaACATTTACAATCAATAATAT-----CAAGA-TTA---C-AA--TGAAAAT--G------TTGA--C----AT---A-----TT-AAATATTTGAAGCAGATA----CCTGTTAAA-TAAATA-TAAATGT------TTACAATGGCA--AACATG---CACAA--TTTATCAATTTCATGAGAA-GCT-AATTTAATAATCAGAAATTCTGTATTCAGATATT-TAAAAGTAGCA-------ATGTTATTCAGTTATCTTATTA--ATT-GAGGT---ATAT-TGTT-C----CAGATTTCTTTGGCAGAATAAGATAA---TGAA-------AGTGTG-----TTAAGTT----CCTTTG--TGCATAATGTCCTTGTTTGATATGGAGCGTAGATTATAGCGAGTAATAATAAGTATCTTATTAAGG-GAGC--ATATA---------CATGAACATACTAAATTGTTAATTGCTTT-----A--AAAAT-AAC--------------AATT--ATGC------CA--GAATGATATTTTATCCTGTCAAGAAATGATAAaaagattgagaatcagtgtttttacaaagttcaatgtagggagctttatatgccgacctcagtctagcagcattaagtatcatattagtatttaaaatcgtaccagtaccaaacagttgaccaatagtcaaatgtagattgaatataagcactgtagaacaaatgtttcattctagtatttaatcatataatagacataactatgaactt
gi|14 : CTTCATTT-AGAGATGGAAAA-C-TCATTAAGCTTTACACACA--ATATAAATCTTATTTTCAAT---------------AACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TA----T--T------CT-A--C----AT---A-----AA-CAATATTTGGAGCAGATAGA--TTTGCTGAAATCAATA-CAA-TGA------TAACAGTGATA--AA---G---TACAA--TATTTCAATTTCATGAAAAAGAT-GTTTTAGTAATCAGAGATTCTTTTTACAC-------------------------CG--------TTTTCTGATCA--ATG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------TGTTTGAGTAGTTAAGTTTTAGCCTTAGGATGCATGATGCCCCCGTTTGAAATTAAGTGTAGATTAactttt
gi|15 : taataaatattaatgaataatttCTTTATTT-AGAGTGGGTAAA-C-TCCTTAAGTTTTATATACA--ATATAAATATTATTTTCAACAATGCCCTCTG-AATAACACATTTTAAATCAATAACAT-----CAAAA-TAA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---TGC--------------------GAAAGAT-GTTTTAGTAATCAGAAATTCTTCATACACATATT-TAAAAGTAGCT-------AAGTTATTCAGTATTCTGATTG--TTG-AAGGC---ATAT-TGTT-C----CAGACTTCCATAGCAATATAAGAAAA---TGCA-------TGTTTAAGAAGTTCAGTTTTAGC
gi|16 : aataataataataatgtCTTTATTC-AGAGAGGCTAAA-C-TCATTAAGTTTTATATACA--ATTTAAATTTTATTTT-AATGAGGCCCTCTG-AATAACACACTATATATCAATTATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-G--C----AT---G-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAGTGACA--AA---G---TACAA--TATTTCATTTTCATGCGAAAGAT-GTTTTTGTAATCAGAAAACATTTGTTCACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGGTCG--ATG-AAGGT---ATAT-TGCT-C----CAAACTTCCATGGTAGAATAAGAAAA---TGC
gi|17 : taataatatCTTCACTT-AAAGAGGGTAAAAC-TCATTTAGTTTTATATACA--AAATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTG---C-AA--TG----T--T------TT-A--C----AT---A-----AAACAATATTTGGAGAAGATA----CCT---AAAATCCATA-CAA-TGT------TAACAATGACA--AA---G---TACAA--TATTTCATTTTCACGAGAAAGGT-GCTTTTGTAATCAGAAATTCTTTTCACACATATT-TAAAAGAAGCA-------ACATTATTCAGTTTTCTGATTG--ATG-AATGT---ATAG-TGTT-C----CAGACTTTCA
gi|18 : aataatgataatgtCTTTATTT-AGAGAGGG-AAA-TGTAATTAAGTTTTATATACACAATATAAAT---ATTTTCAATGATGTACTCTG-AATAACACATTTAAAATCAATACTAT-----GAAGC-TTC---C-AA--TG----T--T------TT-A--C----AT---A-----A--CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGAC---AA---G---TACAA--TATTT-ATTTTCATGCGAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATCAAAAAAGTAGCG-------ACGTTATTCAGgattag
gi|19 : TCAAAATCAATAATAT-----CAAGA-TT--------------------------TT-A--C----AT---A-----AA-CCATATTTG-AGAAGATA----CCTGCCAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---AACAA--TATTTCATTTTTATGAGAGAGAT-ATTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGTA-------ATCTAAATCAGTTTTCTGATTG--ATG-AAGGT---ATAT-TGTT-C----CAATCTTCAATAGCAGAAgaaagtatttagtagaaggtaacgtctcatactt
gi|2 : aaatgatattgggtaatgtaaaatgaaaatacatttagagaaggttaagttttatatacaaggtaactcCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATTTTATTTTCAATGAGGCCCTCTG-AATAACACATATAAAATCAAGCATAC-----CAAGA-TTA---C-AA--TG----T--T------TA-A--C----AT---A-----AAACAATATTTTGAGCAGAAA----CCT------------A-CAA-TGT------TAACATTGACA--AA---G---AGCAA--TATTTTATTTTCATGCGAAAGAC-GTTT-AGTTATCAGAAATTCTTTGTACACATATT-TTAAAGTAGCT-------ACGTTATTTAGTTTTCTGATTG--TTG-AAGGT---AAAT-TGTT-C----CAAACTTCCATAGCAGAATAAGAAAA---TGCA-------CATTTAAGAAGTTCAGTTTTAGCTTTTGGATGCATAATGTCCTTGTTTGGAATTGAG-------------GAGTGTTAATGGGTATTTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTATTTATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCTAGAG-TTCTTTAAA
gi|20 : ATTTTGTTCTTCCAGGAAATGATAACCATCGttttttaaaagaatgtgttttatatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagatatacgtctaaatagatataattttgaatttagtttatcacatattttactgacttgtatgttccaacttaatgtttcatcaataaataagccaagaaggttttgacatctttcatgtttgatttgtgaattgttgactgaaatacataattacccagaatgtttaattcaatacatgtagttatgtacctataatcatacatgtagttttgttatatnnnnnnnnnntttgttatatgtagttatgtacctataatcatacatgtagttttgtttcaatttgccataaatgacaatcactaaccatcggcgtacatgtcaacagatgagtcaccaacaaccatca
gi|21 : CAATAATAA-----TAATA---A---T-AA--TG----T--T------TT-A--C----AT---C-----AA-CAATATTTGGAGCAGATA----CCTGCCAAAATCATAA-CAA-TGT------TAACAATGACA--AA---G---TACAA--TATTTCATTTTTATGAGAAAGTT-GTTTTAGTAATCAGAAATTATTTGTACACATATT-TAAAAATAGCA-------ACGTTATTCAGTTTTCTGATTG--TTG-AAGGT---ATAT-TGTT-C----CAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagatatacgtctaaacaaatataattttgattttagttgat
gi|22 : gtttatataattttgtacattagtctaagtttatgtagacttaatataccaacaaCTTTATTT-AGAAAGGGTATT-C-TCATAACATTTTATATACA--ATATAAATCCTATTTTCATTGAGACGCTCTGCAAT--CAAGTTTACAGTAAAGCATAT-----TAA----TA----------G----T--T------TT-G--CCATTAT---A-----AA-C--TGTTTAGAGAAGATAAAAGTCTGCTACAA
gi|23 : atatgaaaataatatGAGCAGATA----CCTGCAAAAATAAATA-CAT-TCT------TAACAATGACA-------G---TGTAAAGTTTTTAATTTTCATGAAACA-----TTTTAGTAATCAGAAATTATGTGTACATGTATT-TGAAAGTAGAA-------ACGTTATTCAGTTTTCTGATTT--GTGTAATG----ATAA-TGTT-C----CATACTTCCATAGAAGAATAAG-AAA---TACA-------CGTTTGAGAAGTTCAGTTTTAGgtaaacctattgcatggtggttatcaaaataatgaaatctggatactattatgctctttaaattacacaaacatgtttcagtcacaaaa
gi|24 : catcaaaactataaaCTTTATCT-AGAGAGGGTAA--C-TCATTAAGTTTTAAATACA--ATATAAATCTCATTTTCAAAGAGGTCCTCTC-AATAACACATTTAAAATCAATAGTAT-----CAAGA-TTA---A-AAATTA----T--T------TT-A--C----AT---A-----TT-CAATATTTGGAGCAATTA----CATCCTAAAATCAATA-CAG-TGT------TAAC--TG------A---G---TACAA--TATTTCATTTTCAT
gi|25 : ataatattgataataataatgtCACGATGACATTGTTTGAAATCGAGCGTAGATTGTAGCCAGTGTTAATGGGTATCTTAATAAGA-TTAC--ATATA---------TATAACGGTACTTAATTATTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGACAATTTATTCTGTAAGtaagc
gi|26 : gtttattttaaattctgtttaaaCTTTATTA-AGAGAGAGTAAA-C-TAATTAAGTTTTATATACA--ATATAAATTTTATTTTCAATGAGTCTTTCTA-AATACCACATTTAAAATTAATAATAT-----CAAGA-TTA---C-AA--AA----T--TAAAATCTT-A--C----TT---A-----TG-AAGTATTTGGAGCAGATA----CCTGCT-AAATTAATA--AA-TAT------TAACAATGACA--AA---G---tctataattataaagaacgttactttcatacagttactttaaaattgataaaa
gi|27 : gtCTTTATTT-AGAGAGTGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATATCAATTTCAACGAGGCTCTCatgtacaa
gi|29 : taataattataatcatgataatagtgtTTT-CGAGAGGG-AAA-C-TCATAAAGTTTTAGATACA--ATATAAATCGTATTTTCAATGAGACCCTCTT-AAT-GTA-ATTTAAAATCAATAAATT-----CAGGATTTA---C-AA--TG----T--T------TT-A--C----AT---A-----TA-AAATACTTGGAGCAGATA----CCTGCTAAAATCacatatggcattcatccgattacaatattgttttgaatatttgaatggacaagtgtttgtattatagagtttct
gi|3 : aataataataacaataaatctCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTCTTTTACACA--ATTTAAATCTTATTTTCAATGAGGTCATTTG-AATAACACATTTATAATCAATAATAT-----CAAGA-TTA---T-AA--TG----T--T------TT-A--------T---A-----AA-CAATATTTGGAGCAGATA----CCTGTTAAAATCTATT-GAA-TAT------TAACAATGACA--AA---A---TGCAC--TATTTTATTTTCACGCGAAAGAT-GTTTTGGTGATCAGAAATTCTGTGTACACATATT-TAAAAGTAGCT-------ACGTTTTTCAGTTTTCTGACTG--TTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTAGGAAGTTTA-----AGGCTTTGGATGCATAATGTCCTTGTTTGAAATTGAG-------------AAGTGTTAATGGGTATCTTAATATGG-TTAC--ATAGA---------TACGAAGATACTAAATTATTAATTACTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATACGATATTTTATTCTGTCAGGAAATGTTAACCATCTA-AGTTTTTTTAAA
gi|31 : taataataatgtTGATTG--GTG-AAGGT---ATAT-TGTT-C----CAGATGTCAATAGCAGACTATGAAAA---TGCA-------CGTTTGAAAAGTTCAGTTTTAGCCTTAAGGTGCATGTTGTTCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTCATAGGTATTTaagttcaagataaaagaaggtgttttatatgttgcatccaatatgagtctacttgaagctttttctgtattttaagtatgttattgatataacaaagtgtaccagtaccccaaataatcggacaattgaccaatgtaggctgaatatacgcattgtagaataaacattccattt
gi|32 : -AGAGACGGTCAA-C-TT-CTAAGTTTTATATACA--ATATAAATCTTATTTTCAACCAGGCCTTCTG-TATAACACATATAAAGTCTATGATAT-----CAAGA-TTA---CAAA--TA----T--T------TT-G-------AC---A-----AA-C--TATTTGGAGCAGATA----CCTGCT
gi|35 : AAA-G-TCATTAAGTTTTATATACA--ACATAAATCTTATTTTCAATGAAGCCCTCTA-AATAACACAT
gi|36 : gtcacttataataataaCTTTATTT-AGAGAGGATTAA-C-GCATTTAG--TTATATACA--AAATAAACATTATGTT
gi|37 : ataatgataataataaaaatgcTGAGAAGTTCAGTTTTTGTTTTAAGGTGCACGGTGTTATTGTTTGATATAGGGCGTTAATAATAG
gi|38 : CTTTATTT-AGACAGGGTAAA-T-GCATTTAGTTTTATAAACA--ATGT
gi|4 : aaaataataacaataatatCTTTATTT-AGAGAGGATAAA-C-TCATTAAGTTGTATATACA--ATATAAATTTTAATTTCAATGAGACCCTCTG-AATAATACATATAAAATCAATAATAT-----CAGGA-TTA---C-AA--TT----T--T------TT-A--C----AT---A-----AAACAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAAAGAAA--CT---G---TGCTA--TATTTTATTTTCATGCAAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATT-CAAAAGTAGCT-------ACAATATTCAGTTTTCCGATTG--TT---------------------------GACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTAAAGAAGTTCAGTTTTAGCCTTTGGATACATAATGTCCTTGTTTGAAATTGAGCCTAGATTATAGTGAGTGTTAATGGGTATCTTGATAAGG-TTAC--ATATA---------TAAG-ATATACTAAATTATTTGTTGCTTT-----C--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTATCAGGACATGATAACCATCTA-AG-TTCTTTAAAta
gi|40 : CTGTATTT-AGAGAGAATAAA-C-CCATTAAGTTTaagtttaaaagaaggtgttttatatggtgcatccaatatgagtctagcacctttattatgtattttaagtatcttattagtattagaaagtgtaccagtatcccaaatagtcatacaacagtccaatgtaggctgaatatacgcattgtagaataaatttttca
gi|41 : ataacactattaataataattatgtCTTTATTT-GGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--GTA
gi|42 : tgatatGT------TAACAATGGCATAAA---T---TACAA--TATTTCAAGTTCATGGGGAAGAT-GTTTTatg
gi|43 : TTCATTC-ACAGAGGGTAAA-C-TCGTCAAGTTTTATATACA--A
gi|45 : tgataatatgGACATTTTATCCTGTCAGGAAATGATAACAATCGA-AA-TT
gi|5 : TTTATTTTAGAGAGGGCAAA-C-TTATTAAGTTATATATACA--ATATAAATCATTTTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATACTAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTGAAATTCATA-CAA-TGT------TAACAATGA-A--AA---G---TGCAA--TATTTTATTTTCATGCAAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACATATATT-TAAAAGTAGCT-------TCTTTATTTAGTTTTCTGATTG--TTG-AAGGT---ATAT-TGTT-C----CAGACTTTCATAGCAGAAAGAGAAAA---TGCA-------CGTTTAAGAAAATCAGTTTTAGCCTTTTGATGCATAATGTCCTTGTTTCGAATTGAGCGTAGATTATAGCAAGTATTAATGGGTATCTTAAAAAGG-TTACNNNNNNN---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N--AATACTAAATTATTAATTGCTTTAA----ATACAAAAATCACTATATGGTATTTTATTCTGTCAGGAAATGATAACCATCTA-AG-TTCTTTAAA
gi|7 : tataataagtattgtgtCTTTATTT-AGAGAGGATAAA-C-TCATAAAGTTTTATATTGT--ATATAAATCTTATTTTCAATGAGTCCCTCTG-AATAACACATTTAAAATCAGTAACAT-----CAAGA-TCA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGTTACATGTAACAATGACA--AA---G---TGCAA--TATTTCATTTTCATGAGAAAGAT-GTTCTAGCAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ATATTATTCAGTTTTCTGATTA--ATA-AAGTT---GTAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAACGTTTGCA-------CATTTGAGAAGTTCAGTTTTAGCCTTTGGATGCATGACGTATTTGTTTGAAATCGAGTATAAATTATAGCGAATGTTAATGGGTATCTAAATAAGG-CTAC--ACATA---------TATGTAGGTACTTAACTGTTAATTGCTTT-----A--AAAAC-AA---------------AA----ATGC------CA--ATATG--ATTTTATTCTGTCAatgtttaagagaatgactgtgttttatattgcgcatccaatatgagtctagcagctttcttctatattttaggtatctaattagtatta
gi|8 : attactactacttataataatatCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTGTATACA--ATATAAATCTTATTTTCACTGAAGCACTATG-ATTAACACATTTGAAATCAAAATTTT-----CAAGA-TTAAAAC-AA---A----T--T------TG-A--C----GA---A-----TA-CAATATTTAGAG----TA----C--------ATTAATA-CGA-CGT------TAACAATAATA--AA---GATGTACAA--T---------TCATAAGAAAAAT-ATCTTAGTAATCAGAAATGCTTTGTACATATATT-TAAAAGTAGCA-------TCGTAATTCAGTTTTCTGATTG--TTA-ATGGTTCGATAT------C----TAGACTTTCATAACAGAACAAGAAAA---TGCATCAGGCACGTTTAAGAAGTTCAGATTTAGCCTTAATATGCATGATGTCTCTGTCTGAAATCGAACGTAGATTATAGCGAGTGTTAATGTATATCTTTAAAACG-TTAC--ATATA---------TATGAAAGTACTAAATTGTTAATTGCTTT-----A--AAAAC-AA---------------AACTTTGTGT------CA--TTTTGATATTTTATCATATGAGGAAATGATAACCATTGA-GG-TTCTTTAAAttaaacagtgtaaacaatagtttaaacagataaccaattatgtttgt
gi|9 : tactaataataataatgtCTTTATTT-AGATAGGGTGAA-C-GCATTAAGTTTTATACACA--ATATAAATCTTGTTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATAAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----ATTATA-----AA-CAATATTTGGATCAGATA----GCTGCTAAAATCAATA-CAT-TGT------TAACAAT-------------------------TTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAGGTATCA-------ATGCTATTCAGTTTTGTGATTGACTTG---GGT---ATAT-TGTT-T----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTGTGAAGTTCAGTTTTTTCCTTGGGATGCATTATGTCCTTGTTTGAAATCGTGCATAGA-AATAGCCAGTGTTAATGGTTATCTTAATAAGGTTTAC--ATATGATATATAATTATGAAGGTACTTAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATTC------TA--ATATGATATTTTATTCTGTCAGGAAATGCTTACCATAGA-AG-TTCTTTAAAcagt
blockSeqs : T A G CA C . T AAA A AT AAAA . AAAATC G GA CATT TAT TAGATAA AAAG T A TACATG TA CAT ATG AG T C A A ATTTTTTT ACT A TCG C . . GTT TCAGGCA T T NN ATATATAAT . . T ATTATTAATTGCTTT CTTT AAAAAT CT T G T
blockSeqs : . . . . . . . . . . . . . . . . . AAA GA . . . . . AA . C A . . T G T . . . . . . T . . . . . . C TT . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . AAA . . . . . . . . C A . . A T . . . . . . . A . . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . . . . . AAA . . . . . . . . C A . . T A . . . . . . . T . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . AT . . . . . . . . C C . . A A . . . . . . . T . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . TT . . . . . . . . C A . . A T . . . . . . . A . . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . . . . . AA . . . . . . . . T C . . G A . . . . . . . A . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . AA . . . . . . . . C A . . A A . . . . . . . T . . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . . . . . AA . . . . . . . . A C . . T A . . . . . . . T . . . . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . . AA . . . . . . . . C A . . A T . . . . . . . T . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . AA . . . . . . . . T A . . A T . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . AA . . . . . . . . T C . . T G . . . . . . . G
blockSeqs : . . . . . . . . . . . . . . . . . TT . . . . . . . . C C . . T T . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . TG . . . . . . . . T G . . T G . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . TA . . . . . . . . C C . . A T . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . AA . . . . . . . . C A . . A T . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . AA . . . . . . . . . A . . A A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . AA . . . . . . . . . A . . . T . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . AA . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . TA . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . AA . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqCons : ***** ** AA****** **** ***** **
originalCons : CTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---TGCAA--TATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGATTG--NTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTGAGAAGTTCAGTTTTAGCCTTNGGATGCATGATGTCCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCGA-AG-TTCTTTAAA
finalCons : CTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---AAA------CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---TGCAA--TATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGATTG--NTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTGAGAAGTTCAGTTTTAGCCTTNGGATGCATGATGTCCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCGA-AG-TTCTTTAAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTTACATGTTACTGACTTCTGTGTTCCAACCTAATGTTTCATCCCAGAATGTTTAATTTTGTTATGTGTACCTATAATTATACATGTACATGTTGTTTTATTAGGATTTAAAGTCATGTTTTTATTTGTACACCAACTTTCAATTTTTATAACATCATTTTGTAATTTTGTTTCGACTTGCCACACGTGACAATCACTAAAATGAATAGTAGATCATCGACGTATATGTCAACGCTTGAATCATCAAGAACCATCAGAAAATCATATATGAATCAAGAAAAGAAGAAGACATAGAATTGAACCTTGTGGGAAACCAGAATGAATGGTGCCTAAGTTAACACTATGGCATCTGTAGTTGGGTAGGACCACGGTGTTCACTAAACTGATACAGTTTTAATTTATGTAAGATAGTATCATGGTCTTATAAATCAAATGCCTCTCGTAGAAAAATAAACACTCCTGGCAAGTTTCCCAGAATAAATTTCTCTTACCCATTTGTGGGTTTAAATTGTTAGGGCAGTTTGGCAAGACTTTTTTTAAAGGAATCCAAATTGAATTTAATTGTATGTAATACGTCACCTATTCAACAGATAGGGGACATATATATGTACTG
Unaligned ( gi|13 ): GTGATTAAGAGTCTTGTTAGTTCTAGAAAGTGTACTAGTACCCTAGATAGTTGAGTAATAATCCAGTTAATGCTGAATATAAGCATTGTAGAATAAATTAATGTTTCATTCCAAGATTTAAGAATATAGAACTTCCTTAAAAGAGACATAGTTTGAAAGTATTAAGTTAATTTACTAACTTGAGTGTTCCAACTTAAAGTAGTTTTTAACGTTTTTGATTGGTTGACTGAAATACACAAAACTCCCGAATGTTTAAGTTTGTCACGTGTGCTTATAAGCGTACATGTAGCTTTATAAGTATATTTTACACCAACTTTCATTTTTTATATAGCCATTTTGTATTTTTGTTTGATTTACCGCACACGTGACAATCACTAACAGATAATTTTACTCAGCATTT
Unaligned ( gi|28 ): AAGGGTTAAAAAAAGGTGTTTTATATGGCACATCCAATATGAATCTAGCAACTTTCTTCTGTATTTTAAGTATCTTATCAGTATTAGAAAGTGTATCAGTACCCCGAATAGTCGAGCAATAATCCAATGTAGATATCATGGTGATGGACCTTGTTAAATTTATTTTATT
Unaligned ( gi|30 ): TATTCATAACATGCGAATAGATATACTTATCACAAAAATAAAAGTTTCAGATGGGTTTTATTTTATCAAATAAAAGTATAAAATGTCTGCTTTCTCGTGATATCTTTCCAACTTTATTTATTAAATGTTTAATTTCACAAATAATGAACAGAATAAGC
Unaligned ( gi|33 ): ATTCAAGAAAAATATGTTTCAGTAATCCCAAACAGTTGAGCAATATAGACCAACTGCAGGCTGATAATTAAAATACATCTGATGTAGACATTGTAGAATAAATGTTTCATTTCAAGATTTAAGCATA
Unaligned ( gi|34 ): AACCATCAATGGCGCCTAATTTAACACGTTGACATCTTTTTTTAGATATGACTGAAACCACTGTACTGTACGTTCAGTAAGATTATAGAGTTTCAATTCATGTAAA
Unaligned ( gi|39 ): TTAAAATATTTAATTGAAAGAGTTCAATATGGCGCATACAATATCAGTCTAGCAGCTTT
Unaligned ( gi|44 ): TCAAAATGATATGTTACCAAATTGAAAAAAACAACGAGACATA
Alignments
lowQualScore : 111111111 222222222222222 1111 111111
lowQualScore : 1 1 1 22 2 44444 1 333 1 22 3333 22 555555 1 22 3333 333 55555555 5555 1 1 555555 22 333 555 22 2 1 2 2 88888888 333 4 333 2 2 4444 444 9999999 1 0 3 55 444444444 99999 55 3 666666666666666 2222 000000 55 2 4 4
lowQualScore : . . . .. . ..... . ... . .. .... .. ...... . .. .... ... ........ .... . . ...... .. ... ... .. . . . . ........ ... . ... . . .... ... ....... . . . .. ......... ..... .. . ............... .... ...... .. . . .
lowQualScore : 6 5 5 22 0 33333 7 000 7 44 7777 44 000000 7 44 7777 000 55555555 8888 9 9 222222 55 222 777 66 1 3 0 1 11111111 999 2 777 1 1 5555 777 3333333 0 4 6 00 555555555 11111 00 6 444444444444444 7777 555555 00 5 4 4
consensus : CTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---TGCAA--TATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGATTG--NTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTGAGAAGTTCAGTTTTAGCCTTNGGATGCATGATGTCCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCGA-AG-TTCTTTAAA
Reference ( family-614 ) : CTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---TGCAA--TATTTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGATTG--NTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTGAGAAGTTCAGTTTTAGCCTTNGGATGCATGATGTCCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCGA-AG-TTCTTTAAA
gi|1 : CTTTATTT-AGAGAAGATAAA-------------------------TATAAATATTATTTTAAATGAGGCCCTCTA-AA-AACGTTTTTAAAATCAATAATATGAACTCACGA-TTA---C-AA--TA----TATT------TT-A--C----CT---A-----A-----TAC---------ATA----CCTGCTAAAAGCAATA-CCA-TAT------TAACAATAACA--AA---G---TACAA--CATTTCATTTTCAGGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-CAAAAGTAGCA-------AAGTTATTCAGTTTTCTGATTG--GAG-ATGGT---TTAT-CGTTACATAGCAGAATTTCATAGCAGAATAATAA------------------------------AGTTTTAGTCTTAGAATTCATGATGTCTTTGTTTGAAATCGAGCGTAGATTATATCAAGTGTTAATAAGAATCTAAATAAGG-TTCC--ATATA----------ACGAAGGTGCTAAATTGTAAATGAATTTCTGGGAATAATGC-AA---------------AA----ATGC------CA--ATATGATATTTCCTCCTGTCAGGAAATGATAAAAAACGA-AG-TTCTTTAAA
gi|10 : gtCTTTATTT-AGAGAGGGTTAG-C-TCTTTAAGTTATATATACA--ATATAAATCTTATTTTCAATGAGGCTGTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AT-CTATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAGTGACA--AT---G---AGCAA--TATTTTATTTTCATGCGAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCT-------ACGTTATTCAGTTTTCTGATTG--GTG-AAGGT---ATAT-TGTT-C----CTGACTTCCATAGCAGAATAAGAAAA---TACA-------TGTTTAAGAAGTTCAGTTTTAGTCTTTGGATGCATAATGTCCTTGTTTGAAATTGAGCGTAGATTATAGTGAGTGTTAATGGGTATCTTAATAAGG-TTAC--ATATA---------TGTGAAGGTACTAAATTATTTATTGCTTT-----A--AATAC-AA---------------AA----ACGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCTA-AG-TTCTTTAAAaagtcaaatagatggtgttttatatggcgcatccaatatgagtctagcagatttcgtctgtattttaagtatcacatcagtataagaaagtgtaccagtaccccaaatagccaagcaatggtccaatgtaggcattgtaatataaaaaattattatcaaaatttaagtatttagatagtctaaggagacatagttttgaatttagttcatcactttactgacctgtgtgttccagctcaatggctcatcaataaatgagccaagtaggttttgacatcttacatgtttgatttggaagttgctgactgaaattcataaatttccataatttctaaatttgatatgtgtacctaaaagcatatcggtagttttattagatttaaaattatattattatttttacacaaacttttatttttttgtaacattttttttcaatacgtggcgattactaccatgattagttgcacatgccaacatttgaatcatcaaccgccatcgaaggttagataacataaatcaagaaaagtagaggacctaaagtggaaccttgccgccaaaaaacggccagaatgaatggtacctaatttaacaatttgactgttttttagttaggacagagatcacagtactgtttgttctgtaaaatgacattatcgtctactaaaccaatgccataagtatatccataaacagtatcccgacacttttcccagaatcaatttcctttatcaatttgtcagttataaatgttagggcaat
gi|11 : AACACATT-AAAATTGATAATGA-----CAAGA-TTA------------------T------TT-AGAC----AT---ATAGATAA-CGA-----AGAGCAGATA----CCTGCTAAA-TCCACATCTA-TGT------TAGCAATGGCA--AA---AAA-TGTAA--AATCT----TTCATGAGAAAGATAGTA--AGCAATTCGAAATTCTTTGCACACATATT-TAAAAGTAACATTTTTTTATTTTATTCAGTTGTCAGATT---TTGAAAGAT---ATATCTGT-------CAGA
gi|12 : aaACATTTACAATCAATAATAT-----CAAGA-TTA---C-AA--TGAAAAT--G------TTGA--C----AT---A-----TT-AAATATTTGAAGCAGATA----CCTGTTAAA-TAAATA-TAAATGT------TTACAATGGCA--AACATG---CACAA--TTTATCAATTTCATGAGAA-GCT-AATTTAATAATCAGAAATTCTGTATTCAGATATT-TAAAAGTAGCA-------ATGTTATTCAGTTATCTTATTA--ATT-GAGGT---ATAT-TGTT-C----CAGATTTCTTTGGCAGAATAAGATAA---TGAA-------AGTGTG-----TTAAGTT----CCTTTG--TGCATAATGTCCTTGTTTGATATGGAGCGTAGATTATAGCGAGTAATAATAAGTATCTTATTAAGG-GAGC--ATATA---------CATGAACATACTAAATTGTTAATTGCTTT-----A--AAAAT-AAC--------------AATT--ATGC------CA--GAATGATATTTTATCCTGTCAAGAAATGATAAaaagattgagaatcagtgtttttacaaagttcaatgtagggagctttatatgccgacctcagtctagcagcattaagtatcatattagtatttaaaatcgtaccagtaccaaacagttgaccaatagtcaaatgtagattgaatataagcactgtagaacaaatgtttcattctagtatttaatcatataatagacataactatgaactt
gi|14 : CTTCATTT-AGAGATGGAAAA-C-TCATTAAGCTTTACACACA--ATATAAATCTTATTTTCAAT---------------AACACATTTAAAATCAATAATAT-----CAAGA-TTA---C-AA--TA----T--T------CT-A--C----AT---A-----AA-CAATATTTGGAGCAGATAGA--TTTGCTGAAATCAATA-CAA-TGA------TAACAGTGATA--AA---G---TACAA--TATTTCAATTTCATGAAAAAGAT-GTTTTAGTAATCAGAGATTCTTTTTACAC-------------------------CG--------TTTTCTGATCA--ATG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------TGTTTGAGTAGTTAAGTTTTAGCCTTAGGATGCATGATGCCCCCGTTTGAAATTAAGTGTAGATTAactttt
gi|15 : taataaatattaatgaataatttCTTTATTT-AGAGTGGGTAAA-C-TCCTTAAGTTTTATATACA--ATATAAATATTATTTTCAACAATGCCCTCTG-AATAACACATTTTAAATCAATAACAT-----CAAAA-TAA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---TGC--------------------GAAAGAT-GTTTTAGTAATCAGAAATTCTTCATACACATATT-TAAAAGTAGCT-------AAGTTATTCAGTATTCTGATTG--TTG-AAGGC---ATAT-TGTT-C----CAGACTTCCATAGCAATATAAGAAAA---TGCA-------TGTTTAAGAAGTTCAGTTTTAGC
gi|16 : aataataataataatgtCTTTATTC-AGAGAGGCTAAA-C-TCATTAAGTTTTATATACA--ATTTAAATTTTATTTT-AATGAGGCCCTCTG-AATAACACACTATATATCAATTATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-G--C----AT---G-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAGTGACA--AA---G---TACAA--TATTTCATTTTCATGCGAAAGAT-GTTTTTGTAATCAGAAAACATTTGTTCACATATT-TAAAAGTAGCA-------ACGTTATTCAGTTTTCTGGTCG--ATG-AAGGT---ATAT-TGCT-C----CAAACTTCCATGGTAGAATAAGAAAA---TGC
gi|17 : taataatatCTTCACTT-AAAGAGGGTAAAAC-TCATTTAGTTTTATATACA--AAATAAATCTTATTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATAATAT-----CAAGA-TTG---C-AA--TG----T--T------TT-A--C----AT---A-----AAACAATATTTGGAGAAGATA----CCT---AAAATCCATA-CAA-TGT------TAACAATGACA--AA---G---TACAA--TATTTCATTTTCACGAGAAAGGT-GCTTTTGTAATCAGAAATTCTTTTCACACATATT-TAAAAGAAGCA-------ACATTATTCAGTTTTCTGATTG--ATG-AATGT---ATAG-TGTT-C----CAGACTTTCA
gi|18 : aataatgataatgtCTTTATTT-AGAGAGGG-AAA-TGTAATTAAGTTTTATATACACAATATAAAT---ATTTTCAATGATGTACTCTG-AATAACACATTTAAAATCAATACTAT-----GAAGC-TTC---C-AA--TG----T--T------TT-A--C----AT---A-----A--CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAATGAC---AA---G---TACAA--TATTT-ATTTTCATGCGAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATCAAAAAAGTAGCG-------ACGTTATTCAGgattag
gi|19 : TCAAAATCAATAATAT-----CAAGA-TT--------------------------TT-A--C----AT---A-----AA-CCATATTTG-AGAAGATA----CCTGCCAAAATCAATA-CAA-TGT------TAACAATGACA--AA---G---AACAA--TATTTCATTTTTATGAGAGAGAT-ATTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGTA-------ATCTAAATCAGTTTTCTGATTG--ATG-AAGGT---ATAT-TGTT-C----CAATCTTCAATAGCAGAAgaaagtatttagtagaaggtaacgtctcatactt
gi|2 : aaatgatattgggtaatgtaaaatgaaaatacatttagagaaggttaagttttatatacaaggtaactcCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATTTTATTTTCAATGAGGCCCTCTG-AATAACACATATAAAATCAAGCATAC-----CAAGA-TTA---C-AA--TG----T--T------TA-A--C----AT---A-----AAACAATATTTTGAGCAGAAA----CCT------------A-CAA-TGT------TAACATTGACA--AA---G---AGCAA--TATTTTATTTTCATGCGAAAGAC-GTTT-AGTTATCAGAAATTCTTTGTACACATATT-TTAAAGTAGCT-------ACGTTATTTAGTTTTCTGATTG--TTG-AAGGT---AAAT-TGTT-C----CAAACTTCCATAGCAGAATAAGAAAA---TGCA-------CATTTAAGAAGTTCAGTTTTAGCTTTTGGATGCATAATGTCCTTGTTTGGAATTGAG-------------GAGTGTTAATGGGTATTTTAATAAGG-TTAC--ATATA---------TATGAAGGTACTAAATTATTTATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTGTCAGGAAATGATAACCATCTAGAG-TTCTTTAAA
gi|20 : ATTTTGTTCTTCCAGGAAATGATAACCATCGttttttaaaagaatgtgttttatatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagatatacgtctaaatagatataattttgaatttagtttatcacatattttactgacttgtatgttccaacttaatgtttcatcaataaataagccaagaaggttttgacatctttcatgtttgatttgtgaattgttgactgaaatacataattacccagaatgtttaattcaatacatgtagttatgtacctataatcatacatgtagttttgttatatnnnnnnnnnntttgttatatgtagttatgtacctataatcatacatgtagttttgtttcaatttgccataaatgacaatcactaaccatcggcgtacatgtcaacagatgagtcaccaacaaccatca
gi|21 : CAATAATAA-----TAATA---A---T-AA--TG----T--T------TT-A--C----AT---C-----AA-CAATATTTGGAGCAGATA----CCTGCCAAAATCATAA-CAA-TGT------TAACAATGACA--AA---G---TACAA--TATTTCATTTTTATGAGAAAGTT-GTTTTAGTAATCAGAAATTATTTGTACACATATT-TAAAAATAGCA-------ACGTTATTCAGTTTTCTGATTG--TTG-AAGGT---ATAT-TGTT-C----CAGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagatatacgtctaaacaaatataattttgattttagttgat
gi|22 : gtttatataattttgtacattagtctaagtttatgtagacttaatataccaacaaCTTTATTT-AGAAAGGGTATT-C-TCATAACATTTTATATACA--ATATAAATCCTATTTTCATTGAGACGCTCTGCAAT--CAAGTTTACAGTAAAGCATAT-----TAA----TA----------G----T--T------TT-G--CCATTAT---A-----AA-C--TGTTTAGAGAAGATAAAAGTCTGCTACAA
gi|23 : atatgaaaataatatGAGCAGATA----CCTGCAAAAATAAATA-CAT-TCT------TAACAATGACA-------G---TGTAAAGTTTTTAATTTTCATGAAACA-----TTTTAGTAATCAGAAATTATGTGTACATGTATT-TGAAAGTAGAA-------ACGTTATTCAGTTTTCTGATTT--GTGTAATG----ATAA-TGTT-C----CATACTTCCATAGAAGAATAAG-AAA---TACA-------CGTTTGAGAAGTTCAGTTTTAGgtaaacctattgcatggtggttatcaaaataatgaaatctggatactattatgctctttaaattacacaaacatgtttcagtcacaaaa
gi|24 : catcaaaactataaaCTTTATCT-AGAGAGGGTAA--C-TCATTAAGTTTTAAATACA--ATATAAATCTCATTTTCAAAGAGGTCCTCTC-AATAACACATTTAAAATCAATAGTAT-----CAAGA-TTA---A-AAATTA----T--T------TT-A--C----AT---A-----TT-CAATATTTGGAGCAATTA----CATCCTAAAATCAATA-CAG-TGT------TAAC--TG------A---G---TACAA--TATTTCATTTTCAT
gi|25 : ataatattgataataataatgtCACGATGACATTGTTTGAAATCGAGCGTAGATTGTAGCCAGTGTTAATGGGTATCTTAATAAGA-TTAC--ATATA---------TATAACGGTACTTAATTATTAATTGCTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATATGACAATTTATTCTGTAAGtaagc
gi|26 : gtttattttaaattctgtttaaaCTTTATTA-AGAGAGAGTAAA-C-TAATTAAGTTTTATATACA--ATATAAATTTTATTTTCAATGAGTCTTTCTA-AATACCACATTTAAAATTAATAATAT-----CAAGA-TTA---C-AA--AA----T--TAAAATCTT-A--C----TT---A-----TG-AAGTATTTGGAGCAGATA----CCTGCT-AAATTAATA--AA-TAT------TAACAATGACA--AA---G---tctataattataaagaacgttactttcatacagttactttaaaattgataaaa
gi|27 : gtCTTTATTT-AGAGAGTGTAAA-C-TCATTAAGTTTTATATACA--ATATAAATATCAATTTCAACGAGGCTCTCatgtacaa
gi|29 : taataattataatcatgataatagtgtTTT-CGAGAGGG-AAA-C-TCATAAAGTTTTAGATACA--ATATAAATCGTATTTTCAATGAGACCCTCTT-AAT-GTA-ATTTAAAATCAATAAATT-----CAGGATTTA---C-AA--TG----T--T------TT-A--C----AT---A-----TA-AAATACTTGGAGCAGATA----CCTGCTAAAATCacatatggcattcatccgattacaatattgttttgaatatttgaatggacaagtgtttgtattatagagtttct
gi|3 : aataataataacaataaatctCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTCTTTTACACA--ATTTAAATCTTATTTTCAATGAGGTCATTTG-AATAACACATTTATAATCAATAATAT-----CAAGA-TTA---T-AA--TG----T--T------TT-A--------T---A-----AA-CAATATTTGGAGCAGATA----CCTGTTAAAATCTATT-GAA-TAT------TAACAATGACA--AA---A---TGCAC--TATTTTATTTTCACGCGAAAGAT-GTTTTGGTGATCAGAAATTCTGTGTACACATATT-TAAAAGTAGCT-------ACGTTTTTCAGTTTTCTGACTG--TTG-AAGGT---ATAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTAGGAAGTTTA-----AGGCTTTGGATGCATAATGTCCTTGTTTGAAATTGAG-------------AAGTGTTAATGGGTATCTTAATATGG-TTAC--ATAGA---------TACGAAGATACTAAATTATTAATTACTTT-----A--AATAC-AA---------------AA----ATGC------CA--ATACGATATTTTATTCTGTCAGGAAATGTTAACCATCTA-AGTTTTTTTAAA
gi|31 : taataataatgtTGATTG--GTG-AAGGT---ATAT-TGTT-C----CAGATGTCAATAGCAGACTATGAAAA---TGCA-------CGTTTGAAAAGTTCAGTTTTAGCCTTAAGGTGCATGTTGTTCTTGTTTGAAATCGAGCGTAGATTATAGCGAGTGTTCATAGGTATTTaagttcaagataaaagaaggtgttttatatgttgcatccaatatgagtctacttgaagctttttctgtattttaagtatgttattgatataacaaagtgtaccagtaccccaaataatcggacaattgaccaatgtaggctgaatatacgcattgtagaataaacattccattt
gi|32 : -AGAGACGGTCAA-C-TT-CTAAGTTTTATATACA--ATATAAATCTTATTTTCAACCAGGCCTTCTG-TATAACACATATAAAGTCTATGATAT-----CAAGA-TTA---CAAA--TA----T--T------TT-G-------AC---A-----AA-C--TATTTGGAGCAGATA----CCTGCT
gi|35 : AAA-G-TCATTAAGTTTTATATACA--ACATAAATCTTATTTTCAATGAAGCCCTCTA-AATAACACAT
gi|36 : gtcacttataataataaCTTTATTT-AGAGAGGATTAA-C-GCATTTAG--TTATATACA--AAATAAACATTATGTT
gi|37 : ataatgataataataaaaatgcTGAGAAGTTCAGTTTTTGTTTTAAGGTGCACGGTGTTATTGTTTGATATAGGGCGTTAATAATAG
gi|38 : CTTTATTT-AGACAGGGTAAA-T-GCATTTAGTTTTATAAACA--ATGT
gi|4 : aaaataataacaataatatCTTTATTT-AGAGAGGATAAA-C-TCATTAAGTTGTATATACA--ATATAAATTTTAATTTCAATGAGACCCTCTG-AATAATACATATAAAATCAATAATAT-----CAGGA-TTA---C-AA--TT----T--T------TT-A--C----AT---A-----AAACAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGT------TAACAAAGAAA--CT---G---TGCTA--TATTTTATTTTCATGCAAAAGAT-GTTTTAGTTATCAGAAATTCTTTGTACACATATT-CAAAAGTAGCT-------ACAATATTCAGTTTTCCGATTG--TT---------------------------GACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTAAAGAAGTTCAGTTTTAGCCTTTGGATACATAATGTCCTTGTTTGAAATTGAGCCTAGATTATAGTGAGTGTTAATGGGTATCTTGATAAGG-TTAC--ATATA---------TAAG-ATATACTAAATTATTTGTTGCTTT-----C--AATAC-AA---------------AA----ATGC------CA--ATATGATATTTTATTCTATCAGGACATGATAACCATCTA-AG-TTCTTTAAAta
gi|40 : CTGTATTT-AGAGAGAATAAA-C-CCATTAAGTTTaagtttaaaagaaggtgttttatatggtgcatccaatatgagtctagcacctttattatgtattttaagtatcttattagtattagaaagtgtaccagtatcccaaatagtcatacaacagtccaatgtaggctgaatatacgcattgtagaataaatttttca
gi|41 : ataacactattaataataattatgtCTTTATTT-GGAGAGGGTAAA-C-TCATTAAGTTTTATATACA--GTA
gi|42 : tgatatGT------TAACAATGGCATAAA---T---TACAA--TATTTCAAGTTCATGGGGAAGAT-GTTTTatg
gi|43 : TTCATTC-ACAGAGGGTAAA-C-TCGTCAAGTTTTATATACA--A
gi|45 : tgataatatgGACATTTTATCCTGTCAGGAAATGATAACAATCGA-AA-TT
gi|5 : TTTATTTTAGAGAGGGCAAA-C-TTATTAAGTTATATATACA--ATATAAATCATTTTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATCAATACTAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTGAAATTCATA-CAA-TGT------TAACAATGA-A--AA---G---TGCAA--TATTTTATTTTCATGCAAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACATATATT-TAAAAGTAGCT-------TCTTTATTTAGTTTTCTGATTG--TTG-AAGGT---ATAT-TGTT-C----CAGACTTTCATAGCAGAAAGAGAAAA---TGCA-------CGTTTAAGAAAATCAGTTTTAGCCTTTTGATGCATAATGTCCTTGTTTCGAATTGAGCGTAGATTATAGCAAGTATTAATGGGTATCTTAAAAAGG-TTACNNNNNNN---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----N--AATACTAAATTATTAATTGCTTTAA----ATACAAAAATCACTATATGGTATTTTATTCTGTCAGGAAATGATAACCATCTA-AG-TTCTTTAAA
gi|7 : tataataagtattgtgtCTTTATTT-AGAGAGGATAAA-C-TCATAAAGTTTTATATTGT--ATATAAATCTTATTTTCAATGAGTCCCTCTG-AATAACACATTTAAAATCAGTAACAT-----CAAGA-TCA---C-AA--TG----T--T------TT-A--C----AT---A-----AA-CAATATTTGGAGCAGATA----CCTGCTAAAATCAATA-CAA-TGTTACATGTAACAATGACA--AA---G---TGCAA--TATTTCATTTTCATGAGAAAGAT-GTTCTAGCAATCAGAAATTCTTTGTACACATATT-TAAAAGTAGCA-------ATATTATTCAGTTTTCTGATTA--ATA-AAGTT---GTAT-TGTT-C----CAGACTTCCATAGCAGAATAAGAAACGTTTGCA-------CATTTGAGAAGTTCAGTTTTAGCCTTTGGATGCATGACGTATTTGTTTGAAATCGAGTATAAATTATAGCGAATGTTAATGGGTATCTAAATAAGG-CTAC--ACATA---------TATGTAGGTACTTAACTGTTAATTGCTTT-----A--AAAAC-AA---------------AA----ATGC------CA--ATATG--ATTTTATTCTGTCAatgtttaagagaatgactgtgttttatattgcgcatccaatatgagtctagcagctttcttctatattttaggtatctaattagtatta
gi|8 : attactactacttataataatatCTTTATTT-AGAGAGGGTAAA-C-TCATTAAGTTTTGTATACA--ATATAAATCTTATTTTCACTGAAGCACTATG-ATTAACACATTTGAAATCAAAATTTT-----CAAGA-TTAAAAC-AA---A----T--T------TG-A--C----GA---A-----TA-CAATATTTAGAG----TA----C--------ATTAATA-CGA-CGT------TAACAATAATA--AA---GATGTACAA--T---------TCATAAGAAAAAT-ATCTTAGTAATCAGAAATGCTTTGTACATATATT-TAAAAGTAGCA-------TCGTAATTCAGTTTTCTGATTG--TTA-ATGGTTCGATAT------C----TAGACTTTCATAACAGAACAAGAAAA---TGCATCAGGCACGTTTAAGAAGTTCAGATTTAGCCTTAATATGCATGATGTCTCTGTCTGAAATCGAACGTAGATTATAGCGAGTGTTAATGTATATCTTTAAAACG-TTAC--ATATA---------TATGAAAGTACTAAATTGTTAATTGCTTT-----A--AAAAC-AA---------------AACTTTGTGT------CA--TTTTGATATTTTATCATATGAGGAAATGATAACCATTGA-GG-TTCTTTAAAttaaacagtgtaaacaatagtttaaacagataaccaattatgtttgt
gi|9 : tactaataataataatgtCTTTATTT-AGATAGGGTGAA-C-GCATTAAGTTTTATACACA--ATATAAATCTTGTTTTCAATGAGGCCCTCTG-AATAACACATTTAAAATAAATAATAT-----CAAGA-TTA---C-AA--TG----T--T------TT-A--C----ATTATA-----AA-CAATATTTGGATCAGATA----GCTGCTAAAATCAATA-CAT-TGT------TAACAAT-------------------------TTCATTTTCATGAGAAAGAT-GTTTTAGTAATCAGAAATTCTTTGTACACATATT-TAAAGGTATCA-------ATGCTATTCAGTTTTGTGATTGACTTG---GGT---ATAT-TGTT-T----CAGACTTCCATAGCAGAATAAGAAAA---TGCA-------CGTTTGTGAAGTTCAGTTTTTTCCTTGGGATGCATTATGTCCTTGTTTGAAATCGTGCATAGA-AATAGCCAGTGTTAATGGTTATCTTAATAAGGTTTAC--ATATGATATATAATTATGAAGGTACTTAATTGTTAATTGCTTT-----A--AATAC-AA---------------AA----ATTC------TA--ATATGATATTTTATTCTGTCAGGAAATGCTTACCATAGA-AG-TTCTTTAAAcagt
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TTTTACATGTTACTGACTTCTGTGTTCCAACCTAATGTTTCATCCCAGAATGTTTAATTTTGTTATGTGTACCTATAATTATACATGTACATGTTGTTTTATTAGGATTTAAAGTCATGTTTTTATTTGTACACCAACTTTCAATTTTTATAACATCATTTTGTAATTTTGTTTCGACTTGCCACACGTGACAATCACTAAAATGAATAGTAGATCATCGACGTATATGTCAACGCTTGAATCATCAAGAACCATCAGAAAATCATATATGAATCAAGAAAAGAAGAAGACATAGAATTGAACCTTGTGGGAAACCAGAATGAATGGTGCCTAAGTTAACACTATGGCATCTGTAGTTGGGTAGGACCACGGTGTTCACTAAACTGATACAGTTTTAATTTATGTAAGATAGTATCATGGTCTTATAAATCAAATGCCTCTCGTAGAAAAATAAACACTCCTGGCAAGTTTCCCAGAATAAATTTCTCTTACCCATTTGTGGGTTTAAATTGTTAGGGCAGTTTGGCAAGACTTTTTTTAAAGGAATCCAAATTGAATTTAATTGTATGTAATACGTCACCTATTCAACAGATAGGGGACATATATATGTACTG
Unaligned ( gi|13 ): GTGATTAAGAGTCTTGTTAGTTCTAGAAAGTGTACTAGTACCCTAGATAGTTGAGTAATAATCCAGTTAATGCTGAATATAAGCATTGTAGAATAAATTAATGTTTCATTCCAAGATTTAAGAATATAGAACTTCCTTAAAAGAGACATAGTTTGAAAGTATTAAGTTAATTTACTAACTTGAGTGTTCCAACTTAAAGTAGTTTTTAACGTTTTTGATTGGTTGACTGAAATACACAAAACTCCCGAATGTTTAAGTTTGTCACGTGTGCTTATAAGCGTACATGTAGCTTTATAAGTATATTTTACACCAACTTTCATTTTTTATATAGCCATTTTGTATTTTTGTTTGATTTACCGCACACGTGACAATCACTAACAGATAATTTTACTCAGCATTT
Unaligned ( gi|28 ): AAGGGTTAAAAAAAGGTGTTTTATATGGCACATCCAATATGAATCTAGCAACTTTCTTCTGTATTTTAAGTATCTTATCAGTATTAGAAAGTGTATCAGTACCCCGAATAGTCGAGCAATAATCCAATGTAGATATCATGGTGATGGACCTTGTTAAATTTATTTTATT
Unaligned ( gi|30 ): TATTCATAACATGCGAATAGATATACTTATCACAAAAATAAAAGTTTCAGATGGGTTTTATTTTATCAAATAAAAGTATAAAATGTCTGCTTTCTCGTGATATCTTTCCAACTTTATTTATTAAATGTTTAATTTCACAAATAATGAACAGAATAAGC
Unaligned ( gi|33 ): ATTCAAGAAAAATATGTTTCAGTAATCCCAAACAGTTGAGCAATATAGACCAACTGCAGGCTGATAATTAAAATACATCTGATGTAGACATTGTAGAATAAATGTTTCATTTCAAGATTTAAGCATA
Unaligned ( gi|34 ): AACCATCAATGGCGCCTAATTTAACACGTTGACATCTTTTTTTAGATATGACTGAAACCACTGTACTGTACGTTCAGTAAGATTATAGAGTTTCAATTCATGTAAA
Unaligned ( gi|39 ): TTAAAATATTTAATTGAAAGAGTTCAATATGGCGCATACAATATCAGTCTAGCAGCTTT
Unaligned ( gi|44 ): TCAAAATGATATGTTACCAAATTGAAAAAAACAACGAGACATA