lowQualScore : 11 1111111111111111 1111111111111111 5555555555555555555555555555555555555555555 111 111111 11 333333333333333333333333333333333333333333333 22222222222222 22222222 777777777777 11111 11 11 1111111 222222222222222
lowQualScore : 1 55 0000000000000000 22 44 22 3333333333333333 1 222 7777777777777777777777777777777777777777777 2 888888888 222 22 44 000000 00 2 444 2 111111111111111111111111111111111111111111111 2 2 444 7 00000000000000 2 2 00000000 2 0 77 333333333333 2 77777 1 3 1 33 2 1 2 888 33 55 1 3 4 99999 6 5 3 0 0000000 3 666 111111111111111 1 777 2 66
lowQualScore : . .. ................ .. .. .. ................ . ... ........................................... . ......... ... .. .. ...... .. . ... . ............................................. . . ... . .............. . . ........ . . .. ............ . ..... . . . .. . . . ... .. .. . . . ..... . . . . ....... . ... ............... . ... . ..
lowQualScore : 7 66 2222222222222222 11 44 22 3333333333333333 7 999 6666666666666666666666666666666666666666666 0 000000000 111 88 88 888888 11 2 111 5 777777777777777777777777777777777777777777777 7 7 777 7 11111111111111 8 4 11111111 8 2 77 222222222222 9 66666 8 1 6 99 7 2 8 555 88 77 6 3 0 88888 5 4 3 2 0000000 1 999 888888888888888 6 888 2 88
consensus : TATACTGAACGGAACAGCT-AACCCG-CC----------------A--C--CT--G----------------ACA-TT---T--T--------------ATGTA-------T-------------T-T---------TC-T-CAA--A--A------AGTA-TC-AAA---GCAATT-T---C--------C---------TGCAC----G--------T--GCAA-A-ATA---AACATTT--NG--TGC--C--AAACAGATGCGCACGAGTAATTGTATAGAATTTCGCAATC-GGCTATGTAAA-AT---CAATACATAATTG-TCTGTTAATG-TCGTATACAA--ATTT-TAATAACGCTAC-TCAA-TATTTT--GACGAAGATAT-TAGAA-------A-TACA---AAA------GT-------GGCG---GG-TTAGCTGTTCCGTTCAGTATA
Reference ( gi|1 ) : TATACTGAACGGAACAGCT-AACCCC-CC----------------A--C--CT--G----------------ACA-TT---T--G--------------ATATA-------G-------------T-T---------TC-C-CAA--A--A------AGTA-GC-AAA---GCAATT-T---C--------C---------TGCAC----A--------T--GCAA-A-ATA---AATATTT--AG--TAC--C--AAACAGATGCACAGGAGTAATTGTATAGAATTTCACAAGCAGGTTATGTAAA-AT---CGATACATAATTG-TCTGTTAATC-TTGTATACAA--ATTT-TAACAACGCTAC-TCAA-TATTTT--GATGAAGACAT-TAGAA-------A-TACA---AAA------GT-------GGTG---GG-TTAGCTGTTCTATTCAGTATA
gi|6 : TATACTAAATGGAACAGCT-ATATCG-CC----------------A--T--CT--G----------------ACA-TT---T--T--------------ACATA-------T-------------T-T---------TC-T-CAACGATTA------ATTA-TC-AAA---ACATCT-T---C--------C---------T-----------------T--GAAA-T-TTG---AAT-TTT--AA--TA-------AACA-ATGTTTGGGA-TAAC-------AAT------GGCCGAATCTGTATT-AT---CAATACAAAATTG-TCTGATAATG-TCGTATACAA--ATTA-AAATGACGCTAT-CAAA-TAATTT--GACG--GATAT-TTGAA-------A-TACA---AAA------CT-------GGTG---GG-TTGGCTGTTCCGTTCAGT
gi|5 : TATACTGAACGGAGCAGCT-AACCCG-TC----------------A--C--CT--G----------------ATA-TT---T--T--------------ATGTA-------
gi|5 : gTATATTGCACGGAACAGAT-AACCCG-CC----------------A--T--TTTTG-----------------TA-TT---T--C---------------TAAA-------A-------------TCT---------TC-CTCAA--A--A------TATT-GA-ATA---GCA--T-T---------------------------------------------AA-A-ATA---A---TTT--CA--TACGACGAAAACAGA----CA--ATTA--TGTATGGA-TTTTAC--TC---TTAAGTAAC-ATTTTCAA-AGA-AATTGATTTGGTACTT-TTGGACA-AA--ATTCATAA-AATG-----TCAGGTAC------ATAAA-ATGT-CAGGT-------A-CATA---AAATATCAGGT-------GACG---GG-TTAGCTGCTCCGTTCAGTATAcctgacattttatgtacctgacattttatgaattttgtccaaaagtaccaaatcaatttctttgaaaatgttacttaagagtaaaatccatacataattgtctgttttcgtcgtatgaaattattttaatgctattcaatattttgaggaagattttagaaatacaaaaatggcgggttatctgttccgtgcaatata
gi|3 : gTATACTGAACGGAACAGCT-AACCCCACCACCTTAAATTTTATGTA--C--CT--G----------------ACA-TT---T--T--------------ATGTA-------T-------------T-T---------TC-T-CAA--A--A------AGAA-TC-AAA---GCATTT-G---C--------C---------T
gi|12 : TATAATGAACGGAACAGCC-AATCAG-CC----------------A--C--CT--GGCATTGATTATACCAGACA-TT---T--C--------------ATATA---------------------T-T---------TC-T-CAA--T--A------AGTA-TC-AAA---GTAACT-T---C--------C---------T----------------------------TG---AA-ATTT--AG--TCT--T--AAATA-------AGGA----------AGAAT---------ATGCTATGTTAA-AT---CAATACATAATTG-TCTGTTAAataaattgggacttgaataagaaaaaaacactgccctgtcaaatcaatacattcttatctgtttgttgtgtcgctgttttgatttcgctactcattttttttaacgaagatattaaaaatacagaagaggcgggttagctgttccgttcagtat
gi|19 : gTATACTAAACGGAACAGCA-AATCCG-CC----------------A--T--AT--G----------------CCA-TT---T------------------T------------------------T-T---------TC-T-CAA--A--A------AGTA-TC-AAA---GTAATT-T---C--------T---------Tagaggcctgacctatttcgccgatatttt
gi|15 : TATACTGAATGGAACAGCT-AACCTG-CT----------------A--C--TT--G----------------ACATTT---T--GTGTACATGAATTTTATGTA-------T-------------T-T---------TC-T-CAA--A--A------AATA-TT-TAC---GCAATT-T---T--------C---------Tca
gi|25 : TATACTGAACGTAACAGCT-AATCCG-CC----------------A--C--AT--A----------------ACA-GT---T--T--------------ATGTA-------tgaaatttagacttgagaatgcaagaacatttagcttatattaaataaaacatcattacattttttaaaaaa
gi|7 : aATACTGAATGGAACAGCT-ACCCCG-CC----------------A--A--CT--G----------------ATA-TT---T--T--------------ATGTA-------T-------------T-T---------TC-T-AAA--A--A------AATA-TC-AAA---GCAATT-T---C--------CCTTAAACTTTGAACTTGGA--------T--ACGA-A-A-G---AACATTT--AGGGTAT--C--A-----ATG-ACAA----AGTTTTA----ATTT--------GGTAA-ATAAA-AT---AATTTCATAATTA-T-TG--AA---------ATGA--GT----GATAACGCTAC-TCAA-TATTTT--GACGAAGACAT-TGGAA-------A-TAC----AAA------GT-------GGCA---GG-TTAGCTGTTCTGTACAGTATtcta
gi|7 : ATACTGTACAGAACAGCT-AACCTG-CC----------------A--C--TT--T----------------GTA-TT---TCCA--------------ATGT----------------------C-T---------TCGT-CAA--A--ATATTG-AGTA-GC-
gi|8 : atactgaatggaacagctaccccgccaactgatattttatgtattttctaaaaaaatatcaaagcaatttcccttaaactttgaacttggatacgaaagaacatttagggtatcaatgacaaagttttaatttggtaaataaaataatttcataattattgaaatgagtgataacATACTGAAAAGAACAGCT-AACCAG-TC----------------A--A--CT--G----------------ACT-TT---T--T--------------ATGTA-------T-------------T-T---------TC-T-CAT--A--A------AGTG-AT-ATCCTTGAAATT-TACAC--------T---------TGAAT----A--------A--G--A-A-AGA---AA-ATTT--AG--GAT------AACAG-TGACCA--AGT--CTGTA-----------------GTT-TGTAAACAT----AATACATCGTTG-TCTGTTAATG-TCGCATACAT--ATTT-TAA---------------TATTTT--GACGAACATAT-TGAAA-------A-TACA---AAA------CT-------GGTT---GG-TTAGCTGTTCCATACAGTAT
gi|8 : ATACTGTATGGAACAGCT-AACCAA-CC----------------AGTT--TT--G-----------------TA-TT---TTCA--------------ATAT--------G-------------T-T---------CG-T-CAA--A--A------
gi|9 : atactgaaaagaacagctaaccagtcaactgactttttatgtattttctcataaagtgatatccttgaaatttacacttgaataagaaagaaaatttaggataacagtgaccaagtctgtagtttgtaaacataatacatcgttgtctgttaatgtcgcatacatattttaataATTCTGGACGGGACAGTT-GACTCG-CC----------------A--C--CT--G----------------ACA-TT---T--T--------------GCGTA-------T-------------T-T---------TC-T-CAA--A--A------AATA-TC-AAA---GCAATT-T---CGTTGAAATT---------TGGAC----T--------TCAGTAAGA-AAG---AACATTT--AG--T----C--AA--AGA----------TAATTGTAT---AT------------TTAT------AT---C-ATAT-TACTTA-TATACCAATT-TTG-ATA---------------ACTCTAC-TCTA-TATTTT--GACAACAATAT-TGAAA-------A-TACA---AAA------GT-------AGCG---GG-TTAGCTGCTCTGTTCAGTGT
gi|9 : ACACTGAACAGAGCAGCT-AACCCG-CT----------------A--CTTTT--G-----------------TA-TT---TTCA--------------ATATT-------G---------------T---------TG-T-CAA--A--A------TATA-G
gi|4 : attctggacgggacagttgactcgccacctgacattttgcgtattttctcaaaaaatatcaaagcaatttcgttgaaatttggacttcagtaagaaagaacatttagtcaaagataattgtatatttatatcatattacttatataccaattttgataactctactATACTGAACGGAACAGCT-AACCTG-CT----------------G--C--CT--G----------------ATA-TT---T--T--------------ATGTACCTGACCG-------------T-TAATGTATTCTC-T-CAA--G--A------AGCATGC--AA---GCAATT-T---T--------CA--------TG-AC----AGTTGGGCTT--GAAG-A-AGAAAGAATATTT--AG--
gi|3 : ATACTGAACGGAACAGCT-AACCCG-CC----------------T--CTTCT--GT---------------ATT-TT---T--A--------------ATAT----------------------C-T---------TCGT-TAA--A--AAAAATGAGTA-GCGAAA---TCAAcctatgaaaattcattacacaactgtctgtttatgtcatatacaaagtttgataacgctactggatataatgacgatggtgtcggaaatacaaaagtggcgggttagctgttctgttcagta
gi|10 : tatactgaacggaacagctaaccccaccaccttaaattttatgtacctgacattttatgtattttctcaaaaagaatcaaagcatttgcctataaattgggacttgaataagaaaaaaacactgccctgtcaaatcaatacattcttatctgtttgttgtgtcgctgttATACTGAACGGAACAACT-AATCCG-CC----------------A--C--TT--
gi|14 : acggaacaaaacagctgatcaaccacttgacagttaatgtattttttctcaaataagtaccaaaccaatttccttgatttttttttactttaatatgaaagaacatttaaatgatataaaatcttttcaaagttctgttaatgtcgtatacagatttgtataaccttactcaatattttatacaaATACTGAACGGAACAGCA-TACCCG-TC----------------A--T--CC--G----------------ACA-TT---T--T--------------ATGTA-------
gi|4 : TACTGAACAGAACAGCT-AACCCG-CC----------------A--C--TT--cctgacgttttatttattttctcaaaacaatttacttgagatttggacttgaataagaaagaacaaatattacataactgtttctttatgtcgtttagactttttgataacgtaactca
gi|11 : atactgaacggaacagctaacctgctgcctgatattttatgtacctgaccgttaatgtattctctcaagaagcatgcaagcaattttcatgacagttgggcttgaagaagaaagaatatttagcctatgaaaattcattacacaactgtctgtttatgtcatatacaaagtttgataacgctactggatataatgacgatggtgtcggaaatacaaTACTGAACGGAACAGCT-AACCTG-CC----------------A--C--CT--G----------------ACA-TTTTAT--GTGCCTGACATTTC-ATGTA-------T-------------T-T---------TC-A-CGA--A--A------AGTA-TC-CTA---GCAATT-T---C--------C---------T
gi|13 : TACTGAACTGGACGGCTTAACCCG-CC----------------A--C--CT--G----------------ACA-TT---T--T--------------ATCTACCT----GGTTTTTATGTTATT-T---------TT-T-CAA--A--A------AGCA-TG-AAA---GCAATT-T---C--------C---------Ttgaaatttggacttgaataagaaagaacatttcgccaatgtaaacatatataattgtctggtaatttcatttacaaacattaataacgttactc
gi|6 : ACTGAACGGAACAGCC-AACCCA-CC----------------A--tgaaattgggacttgaaaaagaaagtacagcttcaaaaaattaaaacataactgtctgttaatgccgtacacataatttaataacgttactc
gi|10 : tatactaaatggaacagctatatcgccatctgacattttacatattttctcaacgattaattatcaaaacatcttccttgaaatttgaattttaataaacaatgtttgggataacaatggccgaatctgtattatcaatacaaaattgtctgataatgtcgtatacaaattaaaatgacgctatcaaataatttgacggatatttgaaatacaaaacACGGAACAAAACAGCT-GATCAA-CC----------------A--C--TT--G----------------ACA-GT---T--A--------------ATGTATT-----T-------------T-T---------TC-T-CAA--AT-A------AGTA-CC-AAA---CCAATT-T---C--------C---------T
gi|26 : TGAACGGAACAGCT-AACCTA-AC----------------A--C--CT--G----------------ACT-TT---T--tgatttttttttactttaatatgaaagaacatttaaatgatataaaatcttttcaaagttctgttaatgtcgtatacagatttgtataaccttactcaatattttatacaaaagtggcggattagttgttccgttcagtat
gi|5 : aa----------------A--C--CT--G----------------ACA-TT---T--T--------------ATGAA-------T-------------T-T---------TG-T-CCA--A--A------AGTA-CC-AAA---TCAATT-T---C--------T---------Tt
gi|2 : gtatactgaacggagcagctaacccgtcacctgatattttatgtacctgacattttatgt----------------A--C--TT--G----------------AAA-TT---T--T--------------ATGTA-------T-------------T-T---------TC-A-TAA--A--A------AGCA-CC-AAA---GCAATA-T---A--------C---------TTGAC----A--------T--TTGG-ACATA---AATAtgaaaatgttacttaagagtaaaatccatacataattgtctgttttcgtcgtatgaaattattttaatgctattcaatattttgaggaagattttagaaatacaaaaatggcgggttatctgttccgtgcaatata
gi|16 : gaacagaacaactcacccaccgcctaatatttttgattttatttttA-TT---T--G--------------ACAAAAG-----G-------------T-T---------TT-T-AAA--A--A------AAT---C-AAA---GC--TTGT---G--------C---------TGCAC----A--------T--GGAA-A-ATA---AACATTTCAAG--TG------AAACAAATGCGCACAAATAATTTTAAAGAATTTCGCAAagaaataatattcaggataataataaccaagtttgtatgatttaatttgacaataattagaatactttcatacttattgaaattggtagtaaaatcagctttcacacggtagtcaaaagtggcaagttagctgtatcgttcagtat
gi|17 : --------C---------TGCCT----A--------T--GCAA-A-ATA---AGCATTT--CA--TGC--C--ATACAGATGTGCACGAGTAGTTGTATAGACTTTTGTAATTATGCTATGTAAA-tc
gi|21 : g--------C---------TGCAC----G--------T--GCAC-A-ATA---AGCATTT--CG--TGC--T--AAACAGATGCACACTAGTTATTATATTGAActgatgagtgtct
gi|20 : tg--------C---------TGCAT----G--------T--GCAA-A-ATA---AGGATTC--TA--TGC--A--AAACAGAAACACACACGTGTTTATATAGAg
gi|18 : tttgtgCAC----G--------T--GCAA-A-ATA---AGCATTT--TG--TGC--C--AAACTGATGCGTACGAGTAATTGTATAGAATATTACAATCGGCCTATGTAAA-A------------AAATG-TCTGT
gi|23 : AC----A--------T--GTAA-A-ATA---AACATTT--CA--TGC--C--AAACAGATGTGCACGAGTAATTGTATAGAATTTCAC
gi|22 : --------T--GCAA-A-TTA---GGTAATT--CT--TAC--T--AAACATATGCACACGAGCAATTGTATAGAATATCACAA
gi|4 : gTATGAAAA-TT---CATTACACAACTG-TCTGTTTATG-TCATATACAA--AGTT-TGATAACGCTAC-TGGA-TATAAT--GACGATGGTGT-CGGAA-------A-TACA---AAA------GT-------GGCG---GG-TTAGCTGTTCTGTTCAGTAt
gi|10 : atactgaacggaacagctaacctgctgcctgatattttatgtacctgaccgttaatgtattctctcaagaagcatgcaagcaattttcatgacagttgggcttgaagaagaaagaatatttagccATATAAA-AT---CTTTTCAAAGTT---CTGTTAATG-TCGTATACAG--ATTT-GTATAACCTTAC-TCAA-TATTTT--------------------------A-TACA---AAA------GT-------GGCG---GA-TTAGTTGTTCCGTTCAGTAT
gi|11 : acggaacaaaacagctgatcaaccacttgacagttaatgtattttttctcaaataagtaccaaaccaatttccttgatttttttttactttaatatgaaagaacatttaaatgATGTAAA------C-ATATATAATTG-TCTGGTAATT-TCATTTACAA--ACAT-TAATAACGTTAC-TC
gi|3 : tactgaacggaacagctaacctgccacctgacattttatgtgcctgacatttcatgtattttcacgaaaagtatcctagcaatttccttgaaatttggacttgaataagaaagaacatttcgccaTGTCAA-AT---CAATACATTCTTA-TCTGTT--TG-TTGTGT-CGCT-GTTT-TGATTTCGCTAC-TCAT-TTTTTTT-AACGAAGATAT-TAAAA-------A-TACA---GAA------GA-------GGCG---GG-TTAGCTGTTCCGTTCAGTAT
gi|5 : tatactgaacggaacagctaaccccaccaccttaaattttatgtacctgacattttatgtattttctcaaaaagaatcaaagcatttgcctataaattgggacttgaataagaaaaaaacactgcccGTAAA-AT---CCATACATAATTG-TCTGTTT-TCGTCGTATGAAATTATTT-TAAT---GCTAT-TCAA-TATTTT--GAGGAAGATTT-TAGAA-------A-TACA---AAA------AT-------GGCG---GG-TTATCTGTTCCGTGCAATATA
gi|13 : gtatactgaacggagcagctaacccgtcacctgatattttatgtacctgacattttatgtacctgacattttatgaattttgtccaaaagtaccaaatcaatttctttgaaaatgttacttaagaAAA-AT---TAAAACATAACTG-TCTGTTAATG-CCGTACACAT--AATT-TAATAACGTTAC-TC
gi|15 : tactgaactggacggcttaacccgccacctgacattttatctacctggtttttatgttattttttcaaaaagcatgaaagcaatttccttgaaattgggacttgaaaaagaaagtacagcttcaaAA--ATTT-CAAGAAAATTGCGTAAA-TATTTTTTGA-GAAAATACATAAAATTCATGTA-CACA---AAATGTCAAGT-------AGCA---GG-TTAGCTGTTCCATTCAGTATA
gi|11 : ATGAA-ATGT-CAGGC-------A-CATA---AAATGTCAGGT-------GGCA---GG-TTAGCTGTTCCGTTCAGTAagacttgagaatgcaagaacatttagcttatattaaataaaacatcattacattttttaaaaaa
gi|7 : T-TAGAA-------AATACAT--AAA------ATATCAGTTGGCG---GG-GTAGCTGTTCCATTCAGTATgtattttcacgaaaagtatcctagcaatttccttgaaatttggacttgaataagaaagaacatttcgccaatgtaaacatatataattgtctggtaatttcatttacaaacattaataacgttactc
gi|8 : AA-------A-TACATAAAAA------GTCA-----GTTGACTGG-TTAGCTGTTCTTTTCAGTATaaaaatatcaaagcaatttcccttaaactttgaacttggatacgaaagaacatttagggtatcaatgacaaagttttaatttggtaaataaaataatttcataattattgaaatgagtgataacgctactcaatattttgacgaagacattggaaatacaaagtggcaggttagctgttctgtacagtat
gi|2 : CA---AAA------GT-------GGCA---AG-TTAGCTGTATCGTTCAGTATtctcataaagtgatatccttgaaatttacacttgaataagaaagaaaatttaggataacagtgaccaagtctgtagtttgtaaacataatacatcgttgtctgttaatgtcgcatacatattttaatattttgacgaacatattgaaaatacaaaactggttggttagctgttccatacagtat
gi|26 : gaacagaacaactcacccaccgcctaatatttttgattttatttttacttgaaattttatgtattttcataaaaagcaccaaagcaatatacttgacatttggacataaataagaaataatattcaggataataataaccaagtttgtatgatttaatttgacaataattagaatactttcatacttattgaaattggtagtaaaatcagctttcacacggtagtA---AAA------GTCA-----GGTGTTAGG-TTAGCTGTTCCGTTCA
gi|3 : aa---AAG------GT-------GGTG---GGGTTAGCTGTTCCGTTCAGTATAt
gi|25 : ------GT-------GGCG---GA-TTAGCTGTTACGTTCAGTATAaaattttatgtacctgacattttatgtattttctcaaaaagaatcaaagcatttgcctataaattgggacttgaataagaaaaaaacactgccctgtcaaatcaatacattcttatctgtttgttgtgtcgctgttttgatttcgctactcattttttttaacgaagatattaaaaatacagaagaggcgggttagctgttccgttcagtat
gi|4 : a---GG-TTAGCTGTTCCGTTCAGTATataacagtttatgtatcta
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|24 ): CTGCATGTGCAAACTAGGCATTTCATTACAAACATGTGCACAAGTAGTTATATACAATTT
Alignments
lowQualScore : 1111111111111 1111111111111111 33333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111 2222222222222222 44444444444444 111111
lowQualScore : 2 4444 1111111111111 3333333333333333 77777777777777777777777777777777777777777777777777777777777777777777 2 22 9999999999 33 55 444 33 2 9999999999999999999 0 4 33 5555 5555 2 444 22 2222222222222222 1 88 11 2 33 2 33 55555555555555 2 9999999 1 2 0 555 999 3 2 666 0 55 1 1 1 2 000000
lowQualScore : . .... ............. ................ .................................................................... . .. .......... .. .. ... .. . ................... . . .. .... .... . ... .. ................ . .. .. . .. . .. .............. . ....... . . . ... ... . . ... . .. . . . . ......
lowQualScore : 2 7777 0000000000000 2222222222222222 22222222222222222222222222222222222222222222222222222222222222222222 1 99 7777777777 11 33 111 22 5 0000000000000000000 7 9 44 3333 3333 5 444 00 6666666666666666 9 33 66 4 33 5 77 22222222222222 5 2222222 3 7 1 444 222 1 6 444 9 66 6 6 4 9 555555
consensus : TATACTGAACGGAACAGCT-AACCC----GCC-------------ACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTT----------CTCAA--A--AAG---TATCAAA--GCAATT-TC--------C---------TGCACGT--G----CA----A-AATA---AGCATTT--CG----TGC--C--AAACAGATGCGCACGAGTAATTGTATAG-AAT--TTCGCA-ATC---G-CTATGTAAA-AT---CA-ATACATAATTG-TCTGTTAATGTCGTATAC---AN--ATTT-TGATAACGCTACTCA---ATATTTT-GACGAAGATATTGGAAATACAAAA------GTGGCGGGTTAGCTGTTCCGTTCAGTATA
Reference ( family-6122 ) : TATACTGAACGGAACAGCT-AACCC----GCC-------------ACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTT----------CTCAA--A--AAG---TATCAAA--GCAATT-TC--------C---------TGCACGT--G----CA----A-AATA---AACATTT--NG----TGC--C--AAACAGATGCGCACGAGTAATTGTATAG-AAT--TTCGCA-ATC-G-G-CTATGTAAA-AT---CA-ATACATAATTG-TCTGTTAATGTCGTATAC---AA--ATTT-TAATAACGCTACTCA---ATATTTT-GACGAAGATATTAGAAATACAAAA------GTGGCGGGTTAGCTGTTCCGTTCAGTATA
gi|1 : TATACTGAACGGAACAGCT-AACCC----CCC-------------ACCTG----------------ACATT---------------TG----------------A----------------TA----------------T-AG--TTT----------CCCAA--A--AAG---TAGCAAA--GCAATT-TC--------C---------TGCACAT--G----CA----A-AATA---AATATTT--AG----TAC--C--AAACAGATGCACAGGAGTAATTGTATAG-AAT--TTCACA-AGCAG-G-TTATGTAAA-AT---CG-ATACATAATTG-TCTGTTAATCTTGTATAC---AA--ATTT-TAACAACGCTACTCA---ATATTTT-GATGAAGACATTAGAAATACAAAA------GTGGTGGGTTAGCTGTTCTATTCAGTATA
gi|10 : ACGGAACAAAACAGCT-GATCA----ACC-------------ACTTG----------------ACAGT---------------TA----------------A----------------TG----------------T-ATTTTTT----------CTCAA--AT-AAG---TACCAAA--CCAATT-TC--------C---------T
gi|10 : ATATAAA-AT---CT-TTTCAAAGTT---CTGTTAATGTCGTATAC---AG--ATTT-GTATAACCTTACTCA---ATATTTT-----------------ATACAAAA------GTGGCGGATTAGTTGTTCCGTTCAGTATtgatttttttttactttaatatgaaagaacatttaaatgatataaaatcttttcaaagttctgttaatgtcgtatacagatttgtataaccttactcaatattttatacaaaagtggcggattagttgttccgttcagtat
gi|11 : acggaacaaaacagctgatcaaccacttgacagttaatgtattttttctcaaataagtaccaaaccaatttccttgatttttttttactttaatatgaaagaacatttaaatgTACTGAACGGAACAGCT-AACCT----GCC-------------ACCTG----------------ACATT---------------TTATGTGCCTGACATTTCA----------------TG----------------T-AT--TTT----------CACGA--A--AAG---TATCCTA--GCAATT-TC--------CTTGAAATT-TGGACTT--G----AA----T-AAGAAAGAACATTT--CGCCAATG---T--AAACATAT--------ATAATTGTCTGGTAAT--TTC
gi|11 : AT--TTCGCC-A---------ATGTAAA------CA--TATATAATTG-TCTGGTAATTTCATTTAC---AA--ACAT-TAATAACGTTACTCatttacaaacattaataacgttactc
gi|12 : tactgaacggaacagctaacctgccacctgacattttatgtgcctgacatttcatgtattttcacgaaaagtatcctagcaatttccttgaaatttggacttgaataagaaagaacTATAATGAACGGAACAGCC-AATCA----GCC-------------ACCTGGCATTGATTATACCAGACATT---------------TC----------------A----------------TA----------------T-AT--TT-----------CTCAA--T--AAG---TATCAAA--GTAACT-TC--------C---------T
gi|12 : g-G-CTATGTTAA-AT---CA-ATACATAATTG-TCTGTTAAtgaaatttagtcttaaataaggaagaatatgctatgttaaatcaatacataattgtctgttaaagaggcctgacctatttcgccgatatttt
gi|13 : gtataatgaacggaacagccaatcagccacctggcattgattataccagacatttcatatatttctcaataagtatcaaagtaacttccttgaaatttagtcttaaataaggaagaatatTACTGAACTGGACGGCTTAACCC----GCC-------------ACCTG----------------ACATT---------------TTATCTACCTGGTTTTT-A----------------TG----------------TTAT--TTT----------TTCAA--A--AAG---CATGAAA--GCAATT-TC--------C---------Tagaggcctgacctatttcgccgatatttt
gi|13 : AAA-AT---TA-AAACATAACTG-TCTGTTAATGCCGTACAC---AT--AATT-TAATAACGTTACTCtgaaattgggacttgaaaaagaaagtacagcttcaaaaaattaaaacataactgtctgttaatgccgtacacataatttaataacgttactc
gi|14 : tactgaactggacggcttaacccgccacctgacattttatctacctggtttttatgttattttttcaaaaagcatgaaagcaatttccttgaaattgggacttgaaaaagaaagtacagcttcaaATACTGAACGGAACAGCA-TACCC----GTC-------------ATCCG----------------ACATT---------------TT----------------A----------------TGTACCTGACGTTTTATTT-AT--TTT----------CTCAA--A--A
gi|14 : AA-AT----A-TTACATAACTG-TTTCTTTATGTCGTTTAG---AC--TTTT-TGATAACGTAACTCA---caatttacttgagatttggacttgaataagaaagaacaaatattacataactgtttctttatgtcgtttagactttttgataacgtaactca
gi|15 : atactgaacggaacagcatacccgtcatccgacattttatgtacctgacgttttatttattttctcaaaacaatttacttgagatttggacttgaataagaaagaacTATACTGAATGGAACAGCT-AACCT----GCT-------------ACTTG----------------ACATTTTGTGTACATGAATTTT----------------A----------------TG----------------T-AT--TTT----------CTCAA--A--AAA---TATTTAC--GCAATT-TT--------C---------T
gi|16 : --TTT----------TTAAA--A--AA-----ATCAAA--GC--TTGTG--------C---------TGCACAT--G----GA----A-AATA---AACATTTCAAG----TG------AAACAAATGCGCACAAATAATTTTAAAG-AAT--TTCGCA-ATC-tgaaatttagacttgagaatgcaagaacatttagcttatattaaataaaacatcattacattttttaaaaaa
gi|17 : atttgacaaaagg--------C---------TGCCTAT--G----CA----A-AATA---AGCATTT--CA----TGC--C--ATACAGATGTGCACGAGTAGTTGTATAG-ACT--TTTGTA-ATT-ATG-CTATGTAAA-
gi|18 : gCACGT--G----CA----A-AATA---AGCATTT--TG----TGC--C--AAACTGATGCGTACGAGTAATTGTATAG-AAT--ATTACA-ATC-G-GCCTATGTAAA-A-------------AAATG-TCTGTctgatgagtgtct
gi|19 : TATACTAAACGGAACAGCA-AATCC----GCC-------------ATATG----------------CCATT---------------T-------------------------------------------------------T--TTT----------CTCAA--A--AAG---TATCAAA--GTAATT-TC--------T---------T
gi|2 : -------------ACTTG----------------AAATT---------------TT----------------A----------------TG----------------T-AT--TTT----------CATAA--A--AAG---CACCAAA--GCAATca
gi|2 : gaacagaacaactcacccaccgcctaatatttttgattttatttttCAAAA------GTGGCAAGTTAGCTGTATCGTTCAGTATatacttgacatttggacataaataagaaataatattcaggataataataaccaagtttgtatgatttaatttgacaataattagaatactttcatacttattgaaattggtagtaaaatcagctttcacacggtagtcaaaagtggcaagttagctgtatcgttcagtat
gi|20 : gaacagaacaactcacccaccgcctaatatttttgattttatttttacttgaaattttatgtattttcataaaaagcaccaaagcaatatacttgacatttggacataaataagaaataatattcaggataataataaccaagtttgtatgatttaatttgacaataattagaatactttcatacttattgaaattggtagtaaaatcagctttcacacggtagt--------C---------TGCATGT--G----CA----A-AATA---AGGATTC--TA----TGC--A--AAACAGAAACACACACGTGTTTATATAG-A
gi|21 : tttgtg--------C---------TGCACGT--G----CA----C-AATA---AGCATTT--CG----TGC--T--AAACAGATGCACACTAGTTATTATATTG-AA
gi|22 : tgGT--G----CA----A-ATTA---GGTAATT--CT----TAC--T--AAACATATGCACACGAGCAATTGTATAG-AAT--ATCACA-ATg
gi|23 : ACAT--G----TA----A-AATA---AACATTT--CA----TGC--C--AAACAGATGTGCACGAGTAATTGTATAG-AAT--TTCAC
gi|24 : --------C---------TGCATGT--G----CA----A-ACTA---GGCATTT--CA----TTA--C--AAAC--ATGTGCACAAGTAGTTATATAC-AAT--TT
gi|25 : TATACTGAACGTAACAGCT-AATCC----GCC-------------ACATA----------------ACAGT---------------TT----------------A----------------TG----------------T-AT--CT
gi|26 : aTGAACGGAACAGCT-AACCT----AAC-------------ACCTG----------------ACTTT---------------TT----------------a
gi|3 : aaTATACTGAACGGAACAGCT-AACCCCACCACCTTAAATTTTATGTACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTT----------CTCAA--A--AAG---AATCAAA--GCATTT-GC--------C---------T
gi|3 : TGTCAA-AT---CA-ATACATTCTTA-TCTGTT--TGTTGTGT-C---GCT-GTTT-TGATTTCGCTACTCA---TTTTTTTTAACGAAGATATTAAAAATACAGAA------GAGGCGGGTTAGCTGTTCCGTTCAGTATataaattgggacttgaataagaaaaaaacactgccctgtcaaatcaatacattcttatctgtttgttgtgtcgctgttttgatttcgctactcattttttttaacgaagatattaaaaatacagaagaggcgggttagctgttccgttcagtat
gi|4 : tatactgaacggaacagctaaccccaccaccttaaattttatgtacctgacattttatgtattttctcaaaaagaatcaaagcatttgcctataaattgggacttgaataagaaaaaaacactgcccATACTGAACGGAACAGCT-AACCT----GCT-------------GCCTG----------------ATATT---------------TT----------------ATGTACCTGACCGTTAATG----------------T-AT--TCT----------CTCAA--G--AAG---CAT------GCAA--------------------------------G----CA----A---T--------TTT--CA----TG--------ACAGTTGGGCTTGAAGAA--GAA-AG-AATATTTAGC----------CTATGAAAA-TT---CA-TTACACAACTG-TCTGTTTATGTCATATAC---AA--AGTT-TGATAACGCTACTGG---ATATAAT-GACGATGGTGTCGGAAATACAAAA------GTGGCGGGTTAGCTGTTCTGTTCAGTA
gi|5 : TATACTGAACGGAGCAGCT-AACCC----GTC-------------ACCTG----------------ATATT---------------TT----------------A----------------TG----------------T-A
gi|5 : gTATATTGCACGGAACAGAT-AACCC----GCC-------------A-----------------------TT---------------TT---------------------------------TG----------------T-AT--TTCTAAAATCTTCCTCAA--A--A-----TATTGAATAGCA--T-T----------------------------------A----A-AATA---A---TTT--CA----TACGACGAAAACAGA------CAATTA--TGTATGG-A-T--TTTAC---TC-----TTAAGTAAC-ATTTTCA-A-AGA-AATTGATTTGGTACTTTTGGACA----AA--ATTCATAA-AATG----TCAGGTACAT--------AAAATGTCAGGTACATAAAATATCAGGTGACGGGTTAGCTGCTCCGTTCAGTATAcctgacattttatgtacctgacattttatgaattttgtccaaaagtaccaaatcaatttctttgaaaatgttacttaagagtaaaatccatacataattgtctgttttcgtcgtatgaaattattttaatgctattcaatattttgaggaagattttagaaatacaaaaatggcgggttatctgttccgtgcaatata
gi|5 : g-------------ACCTG----------------ACATT---------------TT----------------A----------------TG----------------A-AT--TTT----------GTCCA--A--AAG---TACCAAA--TCAATT-TC--------T---------T
gi|5 : gtatactgaacggagcagctaacccgtcacctgatattttatgtacctgacattttatgtGTAAA-AT---CC-ATACATAATTG-TCTGTTTTCGTCGTATGA---AATTATTT-TAAT---GCTATTCA---ATATTTT-GAGGAAGATTTTAGAAATACAAAA------ATGGCGGGTTATCTGTTCCGTGCAATATAtgaaaatgttacttaagagtaaaatccatacataattgtctgttttcgtcgtatgaaattattttaatgctattcaatattttgaggaagattttagaaatacaaaaatggcgggttatctgttccgtgcaatata
gi|6 : gtatactgaacggagcagctaacccgtcacctgatattttatgtacctgacattttatgtacctgacattttatgaattttgtccaaaagtaccaaatcaatttctttgaaaatgttacttaagaTATACTAAATGGAACAGCT-ATATC----GCC-------------ATCTG----------------ACATT---------------TT----------------A----------------CA----------------T-AT--TTT----------CTCAACGATTAAT---TATCAAA--ACATCT-TC--------C---------T-----T--G----AA----A-TTTG---AAT-TTT--AA----T-------AAACA-ATGTTTGGGA-TAACA--ATGG-------CCG-A-ATC--------TGTATT-AT---CA-ATACAAAATTG-TCTGATAATGTCGTATAC---AA--ATTA-AAATGACGCTATCAA---ATAATTT-GACG--GATATTTGAAATACAAAA------CTGGTGGGTTGGCTGTTCCGTTCAGT
gi|7 : ATACTGAATGGAACAGCT-ACCCC----GCC-------------AACTG----------------ATATT---------------TT----------------A----------------TG----------------T-AT--TTT----------CTAAA--A--AAA---TATCAAA--GCAATT-TC--------CCTTAAACTTTGAACTT--GGATACG----A-AA-G---AACATTT--AG----GGT------ATCA-ATG---ACAA--AGTTTTA-----AT--TTGGTA-A-----------ATAAA-AT---AA-TTTCATAATTA-T-TGA-AATG------------A--GT----GATAACGCTACTCA---ATATTTT-GACGAAGACATTGGAAATAC-AAA------GTGGCAGGTTAGCTGTTCTGTACAGTAT
gi|8 : ATACTGAAAAGAACAGCT-AACCA----GTC-------------AACTG----------------ACTTT---------------TT----------------A----------------TG----------------T-AT--TTT----------CTCAT--A--AAGTGATATCCTT--GAAATT-T--------------------ACACTT--G----AATAAGA-AAGA---AA-ATTT--AG----GAT------AACAG-TGACCA--AGT--CTGTA----------------------G-TT-TGTAAACAT----A-ATACATCGTTG-TCTGTTAATGTCGCATAC---AT--ATTT-TAATA----------------TTTT-GACGAACATATTGAAAATACAAAA------CTGGTTGGTTAGCTGTTCCATACAGTAT
gi|9 : ATTCTGGACGGGACAGTT-GACTC----GCC-------------ACCTG----------------ACATT---------------TT----------------G----------------CG----------------T-AT--TTT----------CTCAA--A--AAA---TATCAAA--GCAATT-TCGTTGAAATT---------TGGACTTCAG----TA----AGAAAG---AACATTT--AG----T----C--AA--AGA----------TAATTGTAT----AT--TT---ATATC-A----TAT-T--A-CT---TATATAC-CAAT---TTTGATAAC-TC---TACTCTAT--ATTT-TGACAA-------CA---ATATT------GAA---------AATACAAAA------GTAGCGGGTTAGCTGCTCTGTTCAGTGT
Alignments
lowQualScore : 1111111111111 1111111111111111 55555555555555555555555555555555555555555555555555555555555555555555 111111111111111111 11111 111111 111111111111 2222222222222222222
lowQualScore : 2 5555 2222222222222 4444444444444444 00000000000000000000000000000000000000000000000000000000000000000000 2 33 33 55 2 2 888888888888888888 22 4 33 22222 2 000000 222222222222 2 66 22 3 3 22 2 44 7777777777777777777 999999 2 5555 1 7777 1 3 44 0 33 0 0
lowQualScore : . .... ............. ................ .................................................................... . .. .. .. . . .................. .. . .. ..... . ...... ............ . .. .. . . .. . .. ................... ...... . .... . .... . . .. . .. . .
lowQualScore : 4 0000 2222222222222 7777777777777777 77777777777777777777777777777777777777777777777777777777777777777777 4 11 22 66 7 7 888888888888888888 99 9 44 66666 5 666666 333333333333 7 99 00 2 2 11 7 22 3333333333333333333 666666 9 8888 6 7777 0 5 66 1 77 9 9
consensus : TATACTGAACGGAACAGCT-AACCC----GCC-------------ACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAGTATCAAAGCAAT-T-TC--------C---------TG-CACGT--G----CA-AAATAAG------CATTTC--G----TGCCAAACAGATGCGCACGAGTAATTGTATAG-AAT--TTC---GCA-AT--C--G--CTAT------GTAAA-ATCA-ATACATAATTGTCTGTTAATGTCGTATAC---ANATTTTGATAACGCTACTCAATATTTT-GACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATA
Reference ( family-6122 ) : TATACTGAACGGAACAGCT-AACCC----GCC-------------ACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAGTATCAAAGCAAT-T-TC--------C---------TG-CACGT--G----CA-AAATAAG------CATTTC--G----TGCCAAACAGATGCGCACGAGTAATTGTATAG-AAT--TTC---GCA-AT--C--G--CTAT------GTAAA-ATCA-ATACATAATTGTCTGTTAATGTCGTATAC---ANATTTTGATAACGCTACTCAATATTTT-GACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATA
gi|1 : TATACTGAACGGAACAGCT-AACCC----CCC-------------ACCTG----------------ACATT---------------TG----------------A----------------TA----------------T-AG--TTTCCCAA--A--AAGTAGCAAAGCAAT-T-TC--------C---------TG-CACAT--G----CA-AAATAAA------TATTTA--G----TACCAAACAGATGCACAGGAGTAATTGTATAG-AAT--TTC---ACA-AG--CAGG--TTAT------GTAAA-ATCG-ATACATAATTGTCTGTTAATCTTGTATAC---AAATTTTAACAACGCTACTCAATATTTT-GATGAAGACATTAGAAATACAAAAGTGGTGGGTTAGCTGTTCTATTCAGTATA
gi|10 : ACGGAACAAAACAGCT-GATCA----ACC-------------ACTTG----------------ACAGT---------------TA----------------A----------------TG----------------T-ATTTTTTCTCAA--AT-AAGTACCAAACCAAT-T-TC--------C---------T
gi|10 : AT------ATAAA-ATCT-TTTCAAAGTT--CTGTTAATGTCGTATAC---AGATTTGTATAACCTTACTCAATATTTT-----------------ATACAAAAGTGGCGGATTAGTTGTTCCGTTCAGTATtgatttttttttactttaatatgaaagaacatttaaatgatataaaatcttttcaaagttctgttaatgtcgtatacagatttgtataaccttactcaatattttatacaaaagtggcggattagttgttccgttcagtat
gi|11 : acggaacaaaacagctgatcaaccacttgacagttaatgtattttttctcaaataagtaccaaaccaatttccttgatttttttttactttaatatgaaagaacatttaaatgTACTGAACGGAACAGCT-AACCT----GCC-------------ACCTG----------------ACATT---------------TTATGTGCCTGACATTTCA----------------TG----------------T-AT--TTTCACGA--A--AAGTATCCTAGCAAT-T-TC--------CTTGAAATT-TG-GACTT--G--------AATAAGAAAGAACATTTC--GCCAATG-TAAACATAT--------ATAATTGTCTGGTAAT--TTC---
gi|12 : TATAATGAACGGAACAGCC-AATCA----GCC-------------ACCTGGCATTGATTATACCAGACATT---------------TC----------------A----------------TA----------------T-AT--TT-CTCAA--T--AAGTATCAAAGTAAC-T-TC--------C---------Tatttacaaacattaataacgttactc
gi|12 : g--G--CTAT------GTTAA-ATCA-ATACATAATTGTCTGTTAAtgaaatttagtcttaaataaggaagaatatgctatgttaaatcaatacataattgtctgttaaagaggcctgacctatttcgccgatatttt
gi|13 : gtataatgaacggaacagccaatcagccacctggcattgattataccagacatttcatatatttctcaataagtatcaaagtaacttccttgaaatttagtcttaaataaggaagaatatTACTGAACTGGACGGCTTAACCC----GCC-------------ACCTG----------------ACATT---------------TTATCTACCTGGTTTTT-A----------------TG----------------TTAT--TTTTTCAA--A--AAGCATGAAAGCAAT-T-TC--------C---------Tagaggcctgacctatttcgccgatatttt
gi|13 : AAA-ATTA-AAACATAACTGTCTGTTAATGCCGTACAC---ATAATTTAATAACGTTACTCtgaaattgggacttgaaaaagaaagtacagcttcaaaaaattaaaacataactgtctgttaatgccgtacacataatttaataacgttactc
gi|14 : tactgaactggacggcttaacccgccacctgacattttatctacctggtttttatgttattttttcaaaaagcatgaaagcaatttccttgaaattgggacttgaaaaagaaagtacagcttcaaATACTGAACGGAACAGCA-TACCC----GTC-------------ATCCG----------------ACATT---------------TT----------------A----------------TGTACCTGACGTTTTATTT-AT--TTTCTCAA--A--A
gi|14 : AA-AT-A-TTACATAACTGTTTCTTTATGTCGTTTAG---ACTTTTTGATAACGTAACTCAcaatttacttgagatttggacttgaataagaaagaacaaatattacataactgtttctttatgtcgtttagactttttgataacgtaactca
gi|15 : atactgaacggaacagcatacccgtcatccgacattttatgtacctgacgttttatttattttctcaaaacaatttacttgagatttggacttgaataagaaagaacTATACTGAATGGAACAGCT-AACCT----GCT-------------ACTTG----------------ACATTTTGTGTACATGAATTTT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAATATTTACGCAAT-T-TT--------C---------T
gi|16 : --TTTTTAAA--A--AA--ATCAAAGC--T-TGTG--------C---------TG-CACAT--G----GA-AAATAAA------CATTTCAAG----TG--AAACAAATGCGCACAAATAATTTTAAAG-AAT--TTC---GCA-AT--C--tgaaatttagacttgagaatgcaagaacatttagcttatattaaataaaacatcattacattttttaaaaaa
gi|17 : atttgacaaaagg--------C---------TG-CCTAT--G----CA-AAATAAG------CATTTC--A----TGCCATACAGATGTGCACGAGTAGTTGTATAG-ACT--TTT---GTA-ATTAT--G--CTAT------GTAAA-
gi|18 : g-CACGT--G----CA-AAATAAG------CATTTT--G----TGCCAAACTGATGCGTACGAGTAATTGTATAG-AAT--ATT---ACA-AT--C--GGCCTAT------GTAAA-A----------AAATGTCTGTctgatgagtgtct
gi|19 : TATACTAAACGGAACAGCA-AATCC----GCC-------------ATATG----------------CCATT---------------T-------------------------------------------------------T--TTTCTCAA--A--AAGTATCAAAGTAAT-T-TC--------T---------T
gi|2 : -------------ACTTG----------------AAATT---------------TT----------------A----------------TG----------------T-AT--TTTCATAA--A--AAGCACCAAAGCAATAT-AC--------T---------TGACATTT--GGA--CATAAATAAG------ca
gi|2 : gaacagaacaactcacccaccgcctaatatttttgattttatttttCAAAAGTGGCAAGTTAGCTGTATCGTTCAGTATaaataatattcaggataataataaccaagtttgtatgatttaatttgacaataattagaatactttcatacttattgaaattggtagtaaaatcagctttcacacggtagtcaaaagtggcaagttagctgtatcgttcagtat
gi|20 : gaacagaacaactcacccaccgcctaatatttttgattttatttttacttgaaattttatgtattttcataaaaagcaccaaagcaatatacttgacatttggacataaataagaaataatattcaggataataataaccaagtttgtatgatttaatttgacaataattagaatactttcatacttattgaaattggtagtaaaatcagctttcacacggtagt--------C---------TG-CATGT--G----CA-AAATAAG------GATTCT--A----TGCAAAACAGAAACACACACGTGTTTATATAG-A
gi|21 : tttgtg--------C---------TG-CACGT--G----CA-CAATAAG------CATTTC--G----TGCTAAACAGATGCACACTAGTTATTATATTG-AA
gi|22 : tgGT--G----CA-AATTAGG------TAATTC--T----TACTAAACATATGCACACGAGCAATTGTATAG-AAT--ATC---ACA-AT--g
gi|23 : ACAT--G----TA-AAATAAA------CATTTC--A----TGCCAAACAGATGTGCACGAGTAATTGTATAG-AAT--TTC---AC
gi|24 : --------C---------TG-CATGT--G----CA-AACTAGG------CATTTC--A----TTACAAAC--ATGTGCACAAGTAGTTATATAC-AAT--TT
gi|25 : TATACTGAACGTAACAGCT-AATCC----GCC-------------ACATA----------------ACAGT---------------TT----------------A----------------TG----------------T-AT--CT
gi|26 : aTGAACGGAACAGCT-AACCT----AAC-------------ACCTG----------------ACTTT---------------TT----------------a
gi|3 : aaTATACTGAACGGAACAGCT-AACCCCACCACCTTAAATTTTATGTACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAGAATCAAAGCATT-T-GC--------C---------T
gi|3 : T------GTCAA-ATCA-ATACATTCTTATCTGTT--TGTTGTGTCG---CTGTTTTGATTTCGCTACTCATTTTTTTTAACGAAGATATTAAAAATACAGAAGAGGCGGGTTAGCTGTTCCGTTCAGTATataaattgggacttgaataagaaaaaaacactgccctgtcaaatcaatacattcttatctgtttgttgtgtcgctgttttgatttcgctactcattttttttaacgaagatattaaaaatacagaagaggcgggttagctgttccgttcagtat
gi|4 : tatactgaacggaacagctaaccccaccaccttaaattttatgtacctgacattttatgtattttctcaaaaagaatcaaagcatttgcctataaattgggacttgaataagaaaaaaacactgcccATACTGAACGGAACAGCT-AACCT----GCT-------------GCCTG----------------ATATT---------------TT----------------ATGTACCTGACCGTTAATG----------------T-AT--TCTCTCAA--G--AAGCATGCAAGCAAT--------------------------------------------------------TTTC--A----TG----ACAGTTGGGCTTGAAGAA--GAA-AG-AATATTTA---GC------------CTAT------GAAAA-TTCA-TTACACAACTGTCTGTTTATGTCATATAC---AAAGTTTGATAACGCTACTGGATATAAT-GACGATGGTGTCGGAAATACAAAAGTGGCGGGTTAGCTGTTCTGTTCAGTA
gi|5 : TATACTGAACGGAGCAGCT-AACCC----GTC-------------ACCTG----------------A------------------------------------------------------------------------T-AT--TTTAT----------GTACCTGA-CA-T-T-TT--------A---------TG-TACCT--GA---CA-TTTTATG------AATTTT--G----T-CCAAA-AG-TAC-CA-----AATC-------AAT--TTCTTTGAA-AA--T--G--TTACTTAAGAGTAAA-ATCC-ATACATAATTGTCTGTTTTCGTCGTATG----AAATTATTTTAATGCTATTCAATATTTT-GAGGAAGATTTTAGAAATACAAAAATGGCGGGTTATCTGTTCCGTGCAATATA
gi|6 : gTATACTAAATGGAACAGCT-ATATC----GCC-------------ATCTG----------------ACATT---------------TT----------------A----------------CA----------------T-AT--TTTCTCAACGATTAATTATCAAAACATC-T-TC--------C---------T------T--G-------AAATTTG------AATTT--------TAATAAACA-ATGTTTGGGA-TAACA--ATGG-------CC---G-A-AT--C--------T------GTATT-ATCA-ATACAAAATTGTCTGATAATGTCGTATAC---AAATTAAAATGACGCTATCAAATAATTT-GACG--GATATTTGAAATACAAAACTGGTGGGTTGGCTGTTCCGTTCAGT
gi|7 : ATACTGAATGGAACAGCT-ACCCC----GCC-------------AACTG----------------ATATT---------------TT----------------A----------------TG----------------T-AT--TTTCTAAA--A--AAATATCAAAGCAAT-T-TC--------CCTTAAACTTTG-AACTT--GGATACG-AAAGAA-------CATTTA--G----GGT--ATCA-ATG---ACAA--AGTTTTA-----AT--TTG---GTA-A-------------------ATAAA-ATAA-TTTCATAATTAT-TGA-AATG-----------AG----TGATAACGCTACTCAATATTTT-GACGAAGACATTGGAAATAC-AAAGTGGCAGGTTAGCTGTTCTGTACAGTAT
gi|8 : ATACTGAAAAGAACAGCT-AACCA----GTC-------------AACTG----------------ACTTT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAT--A--AAGT
gi|8 : T------GTAAACAT-A-ATACATCGTTGTCTGTTAATGTCGCATAC---ATATTTT-------------AATATTTT-GACGAACATATTGAAAATACAAAACTGGTTGGTTAGCTGTTCCATACAGTATgatatccttgaaatttacacttgaataagaaagaaaatttaggataacagtgaccaagtctgtagtttgtaaacataatacatcgttgtctgttaatgtcgcatacatattttaatattttgacgaacatattgaaaatacaaaactggttggttagctgttccatacagtat
gi|9 : atactgaaaagaacagctaaccagtcaactgactttttatgtattttctcataaagtgatatccttgaaatttacacttgaataagaaagaaaatttaggataacagtgaccaagtctgtagttATTCTGGACGGGACAGTT-GACTC----GCC-------------ACCTG----------------ACATT---------------TT----------------G----------------CG----------------T-AT--TTTCTCAA--A--AAATATCAAAGCAAT-T-TCGTTGAAATT---------TG-GACTTCAG----TA-AGA-AAGAA----CATTTA--G----T--CAA--AGA----------TAATTGTAT----AT--TT------ATAT--C--A---TAT-------T--A-CTTATATAC-CAAT--TTTGATAAC-TC---TACTCTATATTTTGACAA-------CAATA---------------TTGAAAATACAAAAGTAGCGGGTTAGCTGCTCTGTTCAGTGT
Alignments
lowQualScore : 1111111111111 1111111111111111 55555555555555555555555555555555555555555555555555555555555555555555 111111111111111111 11111 111111 111111111111 2222222222222222222
lowQualScore : 2 5555 2222222222222 4444444444444444 00000000000000000000000000000000000000000000000000000000000000000000 2 33 33 55 2 2 888888888888888888 22 4 33 22222 2 000000 222222222222 2 66 22 3 3 22 2 44 7777777777777777777 999999 2 5555 1 7777 1 3 44 0 33 0 0
lowQualScore : . .... ............. ................ .................................................................... . .. .. .. . . .................. .. . .. ..... . ...... ............ . .. .. . . .. . .. ................... ...... . .... . .... . . .. . .. . .
lowQualScore : 4 0000 2222222222222 7777777777777777 77777777777777777777777777777777777777777777777777777777777777777777 4 11 22 66 7 7 888888888888888888 99 9 44 66666 5 666666 333333333333 7 99 00 2 2 11 7 22 3333333333333333333 666666 9 8888 6 7777 0 5 66 1 77 9 9
consensus : TATACTGAACGGAACAGCT-AACCC----GCC-------------ACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAGTATCAAAGCAAT-T-TC--------C---------TG-CACGT--G----CA-AAATAAG------CATTTC--G----TGCCAAACAGATGCGCACGAGTAATTGTATAG-AAT--TTC---GCA-AT--C--G--CTAT------GTAAA-ATCA-ATACATAATTGTCTGTTAATGTCGTATAC---ANATTTTGATAACGCTACTCAATATTTT-GACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATA
Reference ( family-6122 ) : TATACTGAACGGAACAGCT-AACCC----GCC-------------ACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAGTATCAAAGCAAT-T-TC--------C---------TG-CACGT--G----CA-AAATAAG------CATTTC--G----TGCCAAACAGATGCGCACGAGTAATTGTATAG-AAT--TTC---GCA-AT--C--G--CTAT------GTAAA-ATCA-ATACATAATTGTCTGTTAATGTCGTATAC---ANATTTTGATAACGCTACTCAATATTTT-GACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATA
gi|1 : TATACTGAACGGAACAGCT-AACCC----CCC-------------ACCTG----------------ACATT---------------TG----------------A----------------TA----------------T-AG--TTTCCCAA--A--AAGTAGCAAAGCAAT-T-TC--------C---------TG-CACAT--G----CA-AAATAAA------TATTTA--G----TACCAAACAGATGCACAGGAGTAATTGTATAG-AAT--TTC---ACA-AG--CAGG--TTAT------GTAAA-ATCG-ATACATAATTGTCTGTTAATCTTGTATAC---AAATTTTAACAACGCTACTCAATATTTT-GATGAAGACATTAGAAATACAAAAGTGGTGGGTTAGCTGTTCTATTCAGTATA
gi|10 : ACGGAACAAAACAGCT-GATCA----ACC-------------ACTTG----------------ACAGT---------------TA----------------A----------------TG----------------T-ATTTTTTCTCAA--AT-AAGTACCAAACCAAT-T-TC--------C---------T
gi|10 : AT------ATAAA-ATCT-TTTCAAAGTT--CTGTTAATGTCGTATAC---AGATTTGTATAACCTTACTCAATATTTT-----------------ATACAAAAGTGGCGGATTAGTTGTTCCGTTCAGTATtgatttttttttactttaatatgaaagaacatttaaatgatataaaatcttttcaaagttctgttaatgtcgtatacagatttgtataaccttactcaatattttatacaaaagtggcggattagttgttccgttcagtat
gi|11 : acggaacaaaacagctgatcaaccacttgacagttaatgtattttttctcaaataagtaccaaaccaatttccttgatttttttttactttaatatgaaagaacatttaaatgTACTGAACGGAACAGCT-AACCT----GCC-------------ACCTG----------------ACATT---------------TTATGTGCCTGACATTTCA----------------TG----------------T-AT--TTTCACGA--A--AAGTATCCTAGCAAT-T-TC--------CTTGAAATT-TG-GACTT--G--------AATAAGAAAGAACATTTC--GCCAATG-TAAACATAT--------ATAATTGTCTGGTAAT--TTC---
gi|12 : TATAATGAACGGAACAGCC-AATCA----GCC-------------ACCTGGCATTGATTATACCAGACATT---------------TC----------------A----------------TA----------------T-AT--TT-CTCAA--T--AAGTATCAAAGTAAC-T-TC--------C---------Tatttacaaacattaataacgttactc
gi|12 : g--G--CTAT------GTTAA-ATCA-ATACATAATTGTCTGTTAAtgaaatttagtcttaaataaggaagaatatgctatgttaaatcaatacataattgtctgttaaagaggcctgacctatttcgccgatatttt
gi|13 : gtataatgaacggaacagccaatcagccacctggcattgattataccagacatttcatatatttctcaataagtatcaaagtaacttccttgaaatttagtcttaaataaggaagaatatTACTGAACTGGACGGCTTAACCC----GCC-------------ACCTG----------------ACATT---------------TTATCTACCTGGTTTTT-A----------------TG----------------TTAT--TTTTTCAA--A--AAGCATGAAAGCAAT-T-TC--------C---------Tagaggcctgacctatttcgccgatatttt
gi|13 : AAA-ATTA-AAACATAACTGTCTGTTAATGCCGTACAC---ATAATTTAATAACGTTACTCtgaaattgggacttgaaaaagaaagtacagcttcaaaaaattaaaacataactgtctgttaatgccgtacacataatttaataacgttactc
gi|14 : tactgaactggacggcttaacccgccacctgacattttatctacctggtttttatgttattttttcaaaaagcatgaaagcaatttccttgaaattgggacttgaaaaagaaagtacagcttcaaATACTGAACGGAACAGCA-TACCC----GTC-------------ATCCG----------------ACATT---------------TT----------------A----------------TGTACCTGACGTTTTATTT-AT--TTTCTCAA--A--A
gi|14 : AA-AT-A-TTACATAACTGTTTCTTTATGTCGTTTAG---ACTTTTTGATAACGTAACTCAcaatttacttgagatttggacttgaataagaaagaacaaatattacataactgtttctttatgtcgtttagactttttgataacgtaactca
gi|15 : atactgaacggaacagcatacccgtcatccgacattttatgtacctgacgttttatttattttctcaaaacaatttacttgagatttggacttgaataagaaagaacTATACTGAATGGAACAGCT-AACCT----GCT-------------ACTTG----------------ACATTTTGTGTACATGAATTTT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAATATTTACGCAAT-T-TT--------C---------T
gi|16 : --TTTTTAAA--A--AA--ATCAAAGC--T-TGTG--------C---------TG-CACAT--G----GA-AAATAAA------CATTTCAAG----TG--AAACAAATGCGCACAAATAATTTTAAAG-AAT--TTC---GCA-AT--C--tgaaatttagacttgagaatgcaagaacatttagcttatattaaataaaacatcattacattttttaaaaaa
gi|17 : atttgacaaaagg--------C---------TG-CCTAT--G----CA-AAATAAG------CATTTC--A----TGCCATACAGATGTGCACGAGTAGTTGTATAG-ACT--TTT---GTA-ATTAT--G--CTAT------GTAAA-
gi|18 : g-CACGT--G----CA-AAATAAG------CATTTT--G----TGCCAAACTGATGCGTACGAGTAATTGTATAG-AAT--ATT---ACA-AT--C--GGCCTAT------GTAAA-A----------AAATGTCTGTctgatgagtgtct
gi|19 : TATACTAAACGGAACAGCA-AATCC----GCC-------------ATATG----------------CCATT---------------T-------------------------------------------------------T--TTTCTCAA--A--AAGTATCAAAGTAAT-T-TC--------T---------T
gi|2 : -------------ACTTG----------------AAATT---------------TT----------------A----------------TG----------------T-AT--TTTCATAA--A--AAGCACCAAAGCAATAT-AC--------T---------TGACATTT--GGA--CATAAATAAG------ca
gi|2 : gaacagaacaactcacccaccgcctaatatttttgattttatttttCAAAAGTGGCAAGTTAGCTGTATCGTTCAGTATaaataatattcaggataataataaccaagtttgtatgatttaatttgacaataattagaatactttcatacttattgaaattggtagtaaaatcagctttcacacggtagtcaaaagtggcaagttagctgtatcgttcagtat
gi|20 : gaacagaacaactcacccaccgcctaatatttttgattttatttttacttgaaattttatgtattttcataaaaagcaccaaagcaatatacttgacatttggacataaataagaaataatattcaggataataataaccaagtttgtatgatttaatttgacaataattagaatactttcatacttattgaaattggtagtaaaatcagctttcacacggtagt--------C---------TG-CATGT--G----CA-AAATAAG------GATTCT--A----TGCAAAACAGAAACACACACGTGTTTATATAG-A
gi|21 : tttgtg--------C---------TG-CACGT--G----CA-CAATAAG------CATTTC--G----TGCTAAACAGATGCACACTAGTTATTATATTG-AA
gi|22 : tgGT--G----CA-AATTAGG------TAATTC--T----TACTAAACATATGCACACGAGCAATTGTATAG-AAT--ATC---ACA-AT--g
gi|23 : ACAT--G----TA-AAATAAA------CATTTC--A----TGCCAAACAGATGTGCACGAGTAATTGTATAG-AAT--TTC---AC
gi|24 : --------C---------TG-CATGT--G----CA-AACTAGG------CATTTC--A----TTACAAAC--ATGTGCACAAGTAGTTATATAC-AAT--TT
gi|25 : TATACTGAACGTAACAGCT-AATCC----GCC-------------ACATA----------------ACAGT---------------TT----------------A----------------TG----------------T-AT--CT
gi|26 : aTGAACGGAACAGCT-AACCT----AAC-------------ACCTG----------------ACTTT---------------TT----------------a
gi|3 : aaTATACTGAACGGAACAGCT-AACCCCACCACCTTAAATTTTATGTACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAGAATCAAAGCATT-T-GC--------C---------T
gi|3 : T------GTCAA-ATCA-ATACATTCTTATCTGTT--TGTTGTGTCG---CTGTTTTGATTTCGCTACTCATTTTTTTTAACGAAGATATTAAAAATACAGAAGAGGCGGGTTAGCTGTTCCGTTCAGTATataaattgggacttgaataagaaaaaaacactgccctgtcaaatcaatacattcttatctgtttgttgtgtcgctgttttgatttcgctactcattttttttaacgaagatattaaaaatacagaagaggcgggttagctgttccgttcagtat
gi|4 : tatactgaacggaacagctaaccccaccaccttaaattttatgtacctgacattttatgtattttctcaaaaagaatcaaagcatttgcctataaattgggacttgaataagaaaaaaacactgcccATACTGAACGGAACAGCT-AACCT----GCT-------------GCCTG----------------ATATT---------------TT----------------ATGTACCTGACCGTTAATG----------------T-AT--TCTCTCAA--G--AAGCATGCAAGCAAT--------------------------------------------------------TTTC--A----TG----ACAGTTGGGCTTGAAGAA--GAA-AG-AATATTTA---GC------------CTAT------GAAAA-TTCA-TTACACAACTGTCTGTTTATGTCATATAC---AAAGTTTGATAACGCTACTGGATATAAT-GACGATGGTGTCGGAAATACAAAAGTGGCGGGTTAGCTGTTCTGTTCAGTA
gi|5 : TATACTGAACGGAGCAGCT-AACCC----GTC-------------ACCTG----------------A------------------------------------------------------------------------T-AT--TTTAT----------GTACCTGA-CA-T-T-TT--------A---------TG-TACCT--GA---CA-TTTTATG------AATTTT--G----T-CCAAA-AG-TAC-CA-----AATC-------AAT--TTCTTTGAA-AA--T--G--TTACTTAAGAGTAAA-ATCC-ATACATAATTGTCTGTTTTCGTCGTATG----AAATTATTTTAATGCTATTCAATATTTT-GAGGAAGATTTTAGAAATACAAAAATGGCGGGTTATCTGTTCCGTGCAATATA
gi|6 : gTATACTAAATGGAACAGCT-ATATC----GCC-------------ATCTG----------------ACATT---------------TT----------------A----------------CA----------------T-AT--TTTCTCAACGATTAATTATCAAAACATC-T-TC--------C---------T------T--G-------AAATTTG------AATTT--------TAATAAACA-ATGTTTGGGA-TAACA--ATGG-------CC---G-A-AT--C--------T------GTATT-ATCA-ATACAAAATTGTCTGATAATGTCGTATAC---AAATTAAAATGACGCTATCAAATAATTT-GACG--GATATTTGAAATACAAAACTGGTGGGTTGGCTGTTCCGTTCAGT
gi|7 : ATACTGAATGGAACAGCT-ACCCC----GCC-------------AACTG----------------ATATT---------------TT----------------A----------------TG----------------T-AT--TTTCTAAA--A--AAATATCAAAGCAAT-T-TC--------CCTTAAACTTTG-AACTT--GGATACG-AAAGAA-------CATTTA--G----GGT--ATCA-ATG---ACAA--AGTTTTA-----AT--TTG---GTA-A-------------------ATAAA-ATAA-TTTCATAATTAT-TGA-AATG-----------AG----TGATAACGCTACTCAATATTTT-GACGAAGACATTGGAAATAC-AAAGTGGCAGGTTAGCTGTTCTGTACAGTAT
gi|8 : ATACTGAAAAGAACAGCT-AACCA----GTC-------------AACTG----------------ACTTT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAT--A--AAGT
gi|8 : T------GTAAACAT-A-ATACATCGTTGTCTGTTAATGTCGCATAC---ATATTTT-------------AATATTTT-GACGAACATATTGAAAATACAAAACTGGTTGGTTAGCTGTTCCATACAGTATgatatccttgaaatttacacttgaataagaaagaaaatttaggataacagtgaccaagtctgtagtttgtaaacataatacatcgttgtctgttaatgtcgcatacatattttaatattttgacgaacatattgaaaatacaaaactggttggttagctgttccatacagtat
gi|9 : atactgaaaagaacagctaaccagtcaactgactttttatgtattttctcataaagtgatatccttgaaatttacacttgaataagaaagaaaatttaggataacagtgaccaagtctgtagttATTCTGGACGGGACAGTT-GACTC----GCC-------------ACCTG----------------ACATT---------------TT----------------G----------------CG----------------T-AT--TTTCTCAA--A--AAATATCAAAGCAAT-T-TCGTTGAAATT---------TG-GACTTCAG----TA-AGA-AAGAA----CATTTA--G----T--CAA--AGA----------TAATTGTAT----AT--TT------ATAT--C--A---TAT-------T--A-CTTATATAC-CAAT--TTTGATAAC-TC---TACTCTATATTTTGACAA-------CAATA---------------TTGAAAATACAAAAGTAGCGGGTTAGCTGCTCTGTTCAGTGT
blockSeqs : T CACC TTAAATTTTATGT GCATTGATTATACCAG TTATGTGCCTGACATTTCATG T TT CG TT A G CCTTAAACTT AC T CA GATAC T AAAGAA CGCCAATGT T CG CA A G TG T AT CTTTGAAAATGT TTAAGA C TATA A CTCT G T TA AA
blockSeqs : . . . . TTATGTACCTGACGTTTTATT . . . T . . CTTGAAATT G A . GAC . AA CAAGTG A TG CG A T AA . . TGTAATTATGC . . CTT A C T A G AT
blockSeqs : . . . . TTATGTACCTGACCGTTAATG . . . . . . GTTGAAATT C A . AC . . CATGCC G CG CG G G TA . . TACAATCGGCC . . CAA A C C G G AA
blockSeqs : . . . . TTATCTACCTGGTTTTTATG . . . . . . C C G . G . . TGTGCC G CA CA G G TA . . CGAATC . . TAA T G T G G AA
blockSeqs : . . . . TTGTGTACATGAATTTTATG . . . . . . C C T . C . . TATGCA G CA CT G A TA . . ATATCA . . CAA T G A G G AA
blockSeqs : . . . . TAATG . . . . . . C C G . C . . CGTGCT G CA CG G A TT . . GGTAA . . CAT T C A T G .
blockSeqs : . . . . TCATA . . . . . . C C G . C . . CTTACT T TG CG G G TA . . AGCC . . CCA A C A A . .
blockSeqs : . . . . TTATG . . . . . . C C G . C . . CATGCC G TG CA G G TA . . . . CAA A C G G . .
blockSeqs : . . . . TTATG . . . . . . C T A . C . . CATTAC G GG TG G A TA . . . . AAT A . T G
blockSeqs : . . . . TTATG . . . . . . T A G . T . . TGTCC G TT GG A G TG . . . . AT A . T .
blockSeqs : . . . . TTACA . . . . . . T G C . C . . AGGGT G C CA . T A . . . . AA .
blockSeqs : . . . . TTATG . . . . . . C . T . T . . CATG . . . . G T . . . .
blockSeqs : . . . . TTATG . . . . . . C . T . . . . TAAT . . . . . . . .
blockSeqs : . . . . TTGCG . . . . . . C . . . . . AGTC . . . . . . .
blockSeqs : . . . . T . . . . C . . . . .
blockSeqs : . . . . . . . . . A
blockSeqs : . . . C
blockSeqs : .
blockSeqCons :
originalCons : TATACTGAACGGAACAGCT-AACCC----GCC-------------ACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAGTATCAAAGCAAT-T-TC--------C---------TG-CACGT--G----CA-AAATAAG------CATTTC--G----TGCCAAACAGATGCGCACGAGTAATTGTATAG-AAT--TTC---GCA-AT--C--G--CTAT------GTAAA-ATCA-ATACATAATTGTCTGTTAATGTCGTATAC---ANATTTTGATAACGCTACTCAATATTTT-GACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATA
finalCons : TATACTGAACGGAACAGCT-AACCC----GCC-------------ACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAGTATCAAAGCAAT-T-TC--------C---------TG-CACGT--G----CA-AAATAAG------CATTTC--G----TGCCAAACAGATGCGCACGAGTAATTGTATAG-AAT--TTC---GCA-AT--C--G--CTAT------GTAAA-ATCA-ATACATAATTGTCTGTTAATGTCGTATAC---ANATTTTGATAACGCTACTCAATATTTT-GACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATA
Alignments
lowQualScore : 1111111111111 1111111111111111 55555555555555555555555555555555555555555555555555555555555555555555 111111111111111111 11111 111111 111111111111 2222222222222222222
lowQualScore : 2 5555 2222222222222 4444444444444444 00000000000000000000000000000000000000000000000000000000000000000000 2 33 33 55 2 2 888888888888888888 22 4 33 22222 2 000000 222222222222 2 66 22 3 3 22 2 44 7777777777777777777 999999 2 5555 1 7777 1 3 44 0 33 0 0
lowQualScore : . .... ............. ................ .................................................................... . .. .. .. . . .................. .. . .. ..... . ...... ............ . .. .. . . .. . .. ................... ...... . .... . .... . . .. . .. . .
lowQualScore : 4 0000 2222222222222 7777777777777777 77777777777777777777777777777777777777777777777777777777777777777777 4 11 22 66 7 7 888888888888888888 99 9 44 66666 5 666666 333333333333 7 99 00 2 2 11 7 22 3333333333333333333 666666 9 8888 6 7777 0 5 66 1 77 9 9
consensus : TATACTGAACGGAACAGCT-AACCC----GCC-------------ACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAGTATCAAAGCAAT-T-TC--------C---------TG-CACGT--G----CA-AAATAAG------CATTTC--G----TGCCAAACAGATGCGCACGAGTAATTGTATAG-AAT--TTC---GCA-AT--C--G--CTAT------GTAAA-ATCA-ATACATAATTGTCTGTTAATGTCGTATAC---ANATTTTGATAACGCTACTCAATATTTT-GACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATA
Reference ( family-6122 ) : TATACTGAACGGAACAGCT-AACCC----GCC-------------ACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAGTATCAAAGCAAT-T-TC--------C---------TG-CACGT--G----CA-AAATAAG------CATTTC--G----TGCCAAACAGATGCGCACGAGTAATTGTATAG-AAT--TTC---GCA-AT--C--G--CTAT------GTAAA-ATCA-ATACATAATTGTCTGTTAATGTCGTATAC---ANATTTTGATAACGCTACTCAATATTTT-GACGAAGATATTGGAAATACAAAAGTGGCGGGTTAGCTGTTCCGTTCAGTATA
gi|1 : TATACTGAACGGAACAGCT-AACCC----CCC-------------ACCTG----------------ACATT---------------TG----------------A----------------TA----------------T-AG--TTTCCCAA--A--AAGTAGCAAAGCAAT-T-TC--------C---------TG-CACAT--G----CA-AAATAAA------TATTTA--G----TACCAAACAGATGCACAGGAGTAATTGTATAG-AAT--TTC---ACA-AG--CAGG--TTAT------GTAAA-ATCG-ATACATAATTGTCTGTTAATCTTGTATAC---AAATTTTAACAACGCTACTCAATATTTT-GATGAAGACATTAGAAATACAAAAGTGGTGGGTTAGCTGTTCTATTCAGTATA
gi|10 : ACGGAACAAAACAGCT-GATCA----ACC-------------ACTTG----------------ACAGT---------------TA----------------A----------------TG----------------T-ATTTTTTCTCAA--AT-AAGTACCAAACCAAT-T-TC--------C---------T
gi|10 : AT------ATAAA-ATCT-TTTCAAAGTT--CTGTTAATGTCGTATAC---AGATTTGTATAACCTTACTCAATATTTT-----------------ATACAAAAGTGGCGGATTAGTTGTTCCGTTCAGTATtgatttttttttactttaatatgaaagaacatttaaatgatataaaatcttttcaaagttctgttaatgtcgtatacagatttgtataaccttactcaatattttatacaaaagtggcggattagttgttccgttcagtat
gi|11 : acggaacaaaacagctgatcaaccacttgacagttaatgtattttttctcaaataagtaccaaaccaatttccttgatttttttttactttaatatgaaagaacatttaaatgTACTGAACGGAACAGCT-AACCT----GCC-------------ACCTG----------------ACATT---------------TTATGTGCCTGACATTTCA----------------TG----------------T-AT--TTTCACGA--A--AAGTATCCTAGCAAT-T-TC--------CTTGAAATT-TG-GACTT--G--------AATAAGAAAGAACATTTC--GCCAATG-TAAACATAT--------ATAATTGTCTGGTAAT--TTC---
gi|12 : TATAATGAACGGAACAGCC-AATCA----GCC-------------ACCTGGCATTGATTATACCAGACATT---------------TC----------------A----------------TA----------------T-AT--TT-CTCAA--T--AAGTATCAAAGTAAC-T-TC--------C---------Tatttacaaacattaataacgttactc
gi|12 : g--G--CTAT------GTTAA-ATCA-ATACATAATTGTCTGTTAAtgaaatttagtcttaaataaggaagaatatgctatgttaaatcaatacataattgtctgttaaagaggcctgacctatttcgccgatatttt
gi|13 : gtataatgaacggaacagccaatcagccacctggcattgattataccagacatttcatatatttctcaataagtatcaaagtaacttccttgaaatttagtcttaaataaggaagaatatTACTGAACTGGACGGCTTAACCC----GCC-------------ACCTG----------------ACATT---------------TTATCTACCTGGTTTTT-A----------------TG----------------TTAT--TTTTTCAA--A--AAGCATGAAAGCAAT-T-TC--------C---------Tagaggcctgacctatttcgccgatatttt
gi|13 : AAA-ATTA-AAACATAACTGTCTGTTAATGCCGTACAC---ATAATTTAATAACGTTACTCtgaaattgggacttgaaaaagaaagtacagcttcaaaaaattaaaacataactgtctgttaatgccgtacacataatttaataacgttactc
gi|14 : tactgaactggacggcttaacccgccacctgacattttatctacctggtttttatgttattttttcaaaaagcatgaaagcaatttccttgaaattgggacttgaaaaagaaagtacagcttcaaATACTGAACGGAACAGCA-TACCC----GTC-------------ATCCG----------------ACATT---------------TT----------------A----------------TGTACCTGACGTTTTATTT-AT--TTTCTCAA--A--A
gi|14 : AA-AT-A-TTACATAACTGTTTCTTTATGTCGTTTAG---ACTTTTTGATAACGTAACTCAcaatttacttgagatttggacttgaataagaaagaacaaatattacataactgtttctttatgtcgtttagactttttgataacgtaactca
gi|15 : atactgaacggaacagcatacccgtcatccgacattttatgtacctgacgttttatttattttctcaaaacaatttacttgagatttggacttgaataagaaagaacTATACTGAATGGAACAGCT-AACCT----GCT-------------ACTTG----------------ACATTTTGTGTACATGAATTTT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAATATTTACGCAAT-T-TT--------C---------T
gi|16 : --TTTTTAAA--A--AA--ATCAAAGC--T-TGTG--------C---------TG-CACAT--G----GA-AAATAAA------CATTTCAAG----TG--AAACAAATGCGCACAAATAATTTTAAAG-AAT--TTC---GCA-AT--C--tgaaatttagacttgagaatgcaagaacatttagcttatattaaataaaacatcattacattttttaaaaaa
gi|17 : atttgacaaaagg--------C---------TG-CCTAT--G----CA-AAATAAG------CATTTC--A----TGCCATACAGATGTGCACGAGTAGTTGTATAG-ACT--TTT---GTA-ATTAT--G--CTAT------GTAAA-
gi|18 : g-CACGT--G----CA-AAATAAG------CATTTT--G----TGCCAAACTGATGCGTACGAGTAATTGTATAG-AAT--ATT---ACA-AT--C--GGCCTAT------GTAAA-A----------AAATGTCTGTctgatgagtgtct
gi|19 : TATACTAAACGGAACAGCA-AATCC----GCC-------------ATATG----------------CCATT---------------T-------------------------------------------------------T--TTTCTCAA--A--AAGTATCAAAGTAAT-T-TC--------T---------T
gi|2 : -------------ACTTG----------------AAATT---------------TT----------------A----------------TG----------------T-AT--TTTCATAA--A--AAGCACCAAAGCAATAT-AC--------T---------TGACATTT--GGA--CATAAATAAG------ca
gi|2 : gaacagaacaactcacccaccgcctaatatttttgattttatttttCAAAAGTGGCAAGTTAGCTGTATCGTTCAGTATaaataatattcaggataataataaccaagtttgtatgatttaatttgacaataattagaatactttcatacttattgaaattggtagtaaaatcagctttcacacggtagtcaaaagtggcaagttagctgtatcgttcagtat
gi|20 : gaacagaacaactcacccaccgcctaatatttttgattttatttttacttgaaattttatgtattttcataaaaagcaccaaagcaatatacttgacatttggacataaataagaaataatattcaggataataataaccaagtttgtatgatttaatttgacaataattagaatactttcatacttattgaaattggtagtaaaatcagctttcacacggtagt--------C---------TG-CATGT--G----CA-AAATAAG------GATTCT--A----TGCAAAACAGAAACACACACGTGTTTATATAG-A
gi|21 : tttgtg--------C---------TG-CACGT--G----CA-CAATAAG------CATTTC--G----TGCTAAACAGATGCACACTAGTTATTATATTG-AA
gi|22 : tgGT--G----CA-AATTAGG------TAATTC--T----TACTAAACATATGCACACGAGCAATTGTATAG-AAT--ATC---ACA-AT--g
gi|23 : ACAT--G----TA-AAATAAA------CATTTC--A----TGCCAAACAGATGTGCACGAGTAATTGTATAG-AAT--TTC---AC
gi|24 : --------C---------TG-CATGT--G----CA-AACTAGG------CATTTC--A----TTACAAAC--ATGTGCACAAGTAGTTATATAC-AAT--TT
gi|25 : TATACTGAACGTAACAGCT-AATCC----GCC-------------ACATA----------------ACAGT---------------TT----------------A----------------TG----------------T-AT--CT
gi|26 : aTGAACGGAACAGCT-AACCT----AAC-------------ACCTG----------------ACTTT---------------TT----------------a
gi|3 : aaTATACTGAACGGAACAGCT-AACCCCACCACCTTAAATTTTATGTACCTG----------------ACATT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAA--A--AAGAATCAAAGCATT-T-GC--------C---------T
gi|3 : T------GTCAA-ATCA-ATACATTCTTATCTGTT--TGTTGTGTCG---CTGTTTTGATTTCGCTACTCATTTTTTTTAACGAAGATATTAAAAATACAGAAGAGGCGGGTTAGCTGTTCCGTTCAGTATataaattgggacttgaataagaaaaaaacactgccctgtcaaatcaatacattcttatctgtttgttgtgtcgctgttttgatttcgctactcattttttttaacgaagatattaaaaatacagaagaggcgggttagctgttccgttcagtat
gi|4 : tatactgaacggaacagctaaccccaccaccttaaattttatgtacctgacattttatgtattttctcaaaaagaatcaaagcatttgcctataaattgggacttgaataagaaaaaaacactgcccATACTGAACGGAACAGCT-AACCT----GCT-------------GCCTG----------------ATATT---------------TT----------------ATGTACCTGACCGTTAATG----------------T-AT--TCTCTCAA--G--AAGCATGCAAGCAAT--------------------------------------------------------TTTC--A----TG----ACAGTTGGGCTTGAAGAA--GAA-AG-AATATTTA---GC------------CTAT------GAAAA-TTCA-TTACACAACTGTCTGTTTATGTCATATAC---AAAGTTTGATAACGCTACTGGATATAAT-GACGATGGTGTCGGAAATACAAAAGTGGCGGGTTAGCTGTTCTGTTCAGTA
gi|5 : TATACTGAACGGAGCAGCT-AACCC----GTC-------------ACCTG----------------A------------------------------------------------------------------------T-AT--TTTAT----------GTACCTGA-CA-T-T-TT--------A---------TG-TACCT--GA---CA-TTTTATG------AATTTT--G----T-CCAAA-AG-TAC-CA-----AATC-------AAT--TTCTTTGAA-AA--T--G--TTACTTAAGAGTAAA-ATCC-ATACATAATTGTCTGTTTTCGTCGTATG----AAATTATTTTAATGCTATTCAATATTTT-GAGGAAGATTTTAGAAATACAAAAATGGCGGGTTATCTGTTCCGTGCAATATA
gi|6 : gTATACTAAATGGAACAGCT-ATATC----GCC-------------ATCTG----------------ACATT---------------TT----------------A----------------CA----------------T-AT--TTTCTCAACGATTAATTATCAAAACATC-T-TC--------C---------T------T--G-------AAATTTG------AATTT--------TAATAAACA-ATGTTTGGGA-TAACA--ATGG-------CC---G-A-AT--C--------T------GTATT-ATCA-ATACAAAATTGTCTGATAATGTCGTATAC---AAATTAAAATGACGCTATCAAATAATTT-GACG--GATATTTGAAATACAAAACTGGTGGGTTGGCTGTTCCGTTCAGT
gi|7 : ATACTGAATGGAACAGCT-ACCCC----GCC-------------AACTG----------------ATATT---------------TT----------------A----------------TG----------------T-AT--TTTCTAAA--A--AAATATCAAAGCAAT-T-TC--------CCTTAAACTTTG-AACTT--GGATACG-AAAGAA-------CATTTA--G----GGT--ATCA-ATG---ACAA--AGTTTTA-----AT--TTG---GTA-A-------------------ATAAA-ATAA-TTTCATAATTAT-TGA-AATG-----------AG----TGATAACGCTACTCAATATTTT-GACGAAGACATTGGAAATAC-AAAGTGGCAGGTTAGCTGTTCTGTACAGTAT
gi|8 : ATACTGAAAAGAACAGCT-AACCA----GTC-------------AACTG----------------ACTTT---------------TT----------------A----------------TG----------------T-AT--TTTCTCAT--A--AAGT
gi|8 : T------GTAAACAT-A-ATACATCGTTGTCTGTTAATGTCGCATAC---ATATTTT-------------AATATTTT-GACGAACATATTGAAAATACAAAACTGGTTGGTTAGCTGTTCCATACAGTATgatatccttgaaatttacacttgaataagaaagaaaatttaggataacagtgaccaagtctgtagtttgtaaacataatacatcgttgtctgttaatgtcgcatacatattttaatattttgacgaacatattgaaaatacaaaactggttggttagctgttccatacagtat
gi|9 : atactgaaaagaacagctaaccagtcaactgactttttatgtattttctcataaagtgatatccttgaaatttacacttgaataagaaagaaaatttaggataacagtgaccaagtctgtagttATTCTGGACGGGACAGTT-GACTC----GCC-------------ACCTG----------------ACATT---------------TT----------------G----------------CG----------------T-AT--TTTCTCAA--A--AAATATCAAAGCAAT-T-TCGTTGAAATT---------TG-GACTTCAG----TA-AGA-AAGAA----CATTTA--G----T--CAA--AGA----------TAATTGTAT----AT--TT------ATAT--C--A---TAT-------T--A-CTTATATAC-CAAT--TTTGATAAC-TC---TACTCTATATTTTGACAA-------CAATA---------------TTGAAAATACAAAAGTAGCGGGTTAGCTGCTCTGTTCAGTGT