lowQualScore : 222 1 111 66666666666666666666666666666666 888888888888888888888888888888888888888888888888888888888888888888888888888 444 1 1111 3 1
lowQualScore : 333 5 66 1 2 7 000 3 555 2 7 2 00000000000000000000000000000000 55 9 555 3 4 444444444444444444444444444444444444444444444444444444444444444444444444444 666 0 7777 0 3 5
lowQualScore : ... . .. . . . ... . ... . . . ................................ .. . ... . . ........................................................................... ... . .... . . .
lowQualScore : 999 0 11 4 5 5 444 3 888 9 6 9 66666666666666666666666666666666 99 0 888 6 0 888888888888888888888888888888888888888888888888888888888888888888888888888 666 0 0000 2 8 0
consensus : TCTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTTT--ATTGCTTGCAGTTACCAGTGTTACAGAAATTT---T-TG---TTGAGCTGCTCACAT-TT----TCAA---TT--A--CTT-----------TTAATATTTTAAGTTTTATGAGGCATCAGGG---T-TT-TTC-TACTCTTTCTGACTGCGATCCATTCAAAAAATATATAATATATACAATTTCCATGGACTGCAGTTAACAATACATGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TTAACATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
Reference ( gi|4 ) : TTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAA--TTGT--ATTGCTTGCAGTTACCAGTGTTACGGAAATTT---T-TG---TTGAGCTGCTAACAT-TT----TC-----TT--A--CTT-----------TTAATATTTTAAGTTTTATGAGGCATAAGGG---T-TT-TTC-GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCTCTTTAAAAAATATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGTAAATTAGTTTGGGATTCAAATCCCAGCTT
gi|3 : TTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTTTTTATTGCTTGCAGTTACCAGTGTTACAGAATTTT---T-TG---TTGAGCTGCTAACAT-TT----T------------------------------ATCTTTTAAGTTTTATGAGGCATCAGGG-----TT-GTN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAA-------GATACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
gi|1 : tctataattaatatatatatatatataaaaTCTGATTTTTAATAATGTTTGTTGCTGCATGGACAACATATGTTTTT--CTTGCTTGCAGTTACCAGTGTTACACAATTTT---T-TG---TTGAGCTGCTAACAT-TTCCAATC-----TT--A--CTG-----------TTTATATTTTAAGATTGATGAAGCATCAGTG---T-TT-TNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-ATAGTGTTATAAAGGTAGAGTGA-TTAATATACAACTTTAGT-AATTAGTTTTGGAATCAAATCCCAGCTT
gi|2 : tctataattaatacatatacgtatttaaagTGTTTTTTAATGATGTTTGTTGCTGCATGGACAACCTAT--TTTT--AGTGCTTACAG----CA---TTAGAGAAACTT---T-TG---TTGAGCTGCTCATAT-TTTCAATC-----TT--A--CTT-----------TTAATGTTTTAA-------GAGGCATCAGAG---T-CT-TNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TAAACATACAA----AGT-AATTAGTTTTGGATTCAAATGCCTGCT
gi|7 : tctctatgattaatacacacacacatatatatataataTGTTTTTTAATAATGTTTGTTGCTAAATGGACAACATAT--TTCT--ATTGCTTTCAGTAACAAGTGTTACAGAAATTT---T-TG---ATGAGCTGCTCACATATTCAA-TC-----TT--A--CTTTTAATTCTTACTTAATGTTTTAAGTTTTATGAGGCAT
gi|5 : tctatatatatatatataaTGTTTTTTAATAATGCTTATTGCTGCATGGACAACATAT--TTTT--TTTA-TTGC--------------------TTT---T-TG---TTGAGCTGCTCACAT-CC----TCAATC-TT--A--CTT-----------TTAATATTTTAAGTTTTATGAGGCTTCAGAG---TCTT-NNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAGT-TAGTGTTAcatag
gi|12 : tctataattaatacatatatatataata--TTTT--ATTGCATGTATTTACCAGTATTACAGAAATTT---T-AT---TTCGGCTGCTCACAT-TT----TCAAT--TC--A--ATT-----------TTTATATTTTAAGTTTTATGGGGCATCAGGG---T-TT-T
gi|11 : tgt--TTTT--ATTACATTTATTTACCAGTATTACAGAAATTTAA-T-T----TTG-GCTGCTCATAT-TT----TCAA---TTCAA--CTT-----------TTA-TATTTTAAGTTTTATGGGGCATCAGGG---T-TT-T
gi|10 : tgt--TTTT--ATTGCATGCATTTACCAATATTAATAAAGTTT---TATT---TTG-GCTACTAACAT-TT----TCAA---TTCAA--CTT-----------TT-ATATTTTAAGTTTAATAGAGCATCAGTG---T-TT-T
gi|13 : aatgtt--ATTGCTTGCAGTTACCAGTGTTACAGAAATTT---T-TG---TTGAGCTGTTAACAT-TTG---T-------------------------------TATTTTATGTTTGATGAGGCATCAGGG---T-TT-
gi|9 : TTGCATGTATTTACTAGTATAACAGAAATTTAATT-TGGACTTAATTTGCTCACAT-TT----TTAA---TT--AAACTT-----------TTA-TATTTTAAGTTTTATGGGGCATAAGGG---T-TT-T
gi|14 : caatgttttttTGTTTTAGAAATTT---T-AG---CAAGGCTGCTCATAT-TT----TCAAT--TT--AT-CCT-----------TCAATATTTTAAATTTTATGAGGCATAAGGG---T-
gi|15 : tttttTGTTTTAGAAATGT---T-AG---CAAGGCTGCTCATAT-TT----TCAATT-TC--A--CTT-----------TTAATACTTTAAATTTTATGAGGCAT
gi|16 : tatttGCTGCTCACAT-TT----TCAA---TTCAA--CTT-----------TTG-TATTTTAAGTTTTATGGGGCATCAGGG---ccggg
gi|8 : CAT-TT----TCACAATTT--C--CTT-----------TTAATAATTTAAG-CTTATGAAGCATAAAGGGCAT-TTGTTCTTACTCTTTCTGACTGCGATCCATTCAAAAAATATATAATATATACAATTTCCATGGACTGCAGTTAACAATACATGTTCTCTTTGAAAAgt
gi|6 : TGTTCTCTTCAAAAAGC-TGCTGTTACAAAGGTAGAGCGATTTAACATACAA----GGT-TGTCAGTTTTGGGTTCGAATCCCAGCT
gi|17 : gctcccattttcgcaatttcctttttataatttaagttaatgaggcatcaaagtcatttgtgcttactctttctgcctgcaatctattaaaaatatattttatatacaattatatatattatatatatttccatggactgcagtaaacaaA----AGTAA-TTAGTTTTGGATTCAAATCCCAGCTTg
Alignments
lowQualScore : 33333333 11111111111 1111111 222222222222222222222222222222222 1111
lowQualScore : 0 55 55 0 1 0 999 555 44 2 33333 33 22222222 11111111111 5 3 444 3 3 3 6666666 1 0 0 5 111111111111111111111111111111111 1 8888 6 8 4444 6
lowQualScore : . .. .. . . . ... ... .. . ..... .. ........ ........... . . ... . . . ....... . . . . ................................. . .... . . .... .
lowQualScore : 7 55 55 5 4 2 666 444 22 0 99999 44 66666666 99999999999 9 2 777 1 3 3 6666666 6 1 1 0 666666666666666666666666666666666 9 3333 7 0 2222 7
consensus : TTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTT--TATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGCTCACATTTTC--A--A--T--TC-A--CTT-----------TTAATATTTTAAGTTTTATGAGGCATCAGGG---T-T-T-TT----CT-ACTCTTTCTGNCTGCGATCCATTCAAAAA--------ATATACAAT-ATATACA--------ATTTCCATGGACTGCAGTNAACAATACATGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
Reference ( family-611 ) : TCTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTT--TATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGCTCACATTTTC--A--A--T--T--A--CTT-----------TTAATATTTTAAGTTTTATGAGGCATCAGGG---T-T-T-TT----CT-ACTCTTTCTGACTGCGATCCATTCAAAAA--------ATATATAAT-ATATACA--------ATTTCCATGGACTGCAGTTAACAATACATGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TTAACATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
gi|1 : TCTGATTTTTAATAATGTTTGTTGCTGCATGGACAACATATGTTTT--TCTTGCTTGCAGTTACCAGTGTTACACAATTTT---TTG---TT--GAGCTGCTAACATTTCC--A--A--TCTT--A--CTG-----------TTTATATTTTAAGATTGATGAAGCATCAGTG---T-T-T-TN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-ATAGTGTTATAAAGGTAGAGTGA-TTAATATACAACTTTAGT-AATTAGTTTTGGAATCAAATCCCAGCTT
gi|10 : tctataattaatacatatacgtatttaaagT--TTT--TATTGCATGCATTTACCAATATTA-ATAAAGTT---TTA---TTTTG-GCTACTAACATTTTC--A--A--T--TCAA--CTT-----------TT-ATATTTTAAGTTTAATAGAGCATCAGTG---T-T-T-T
gi|11 : aatgtTGT--TTT--TATTACATTTATTTACCAGTATTACAGAAATTTAA-TT----TT--G-GCTGCTCATATTTTC--A--A--T--TCAA--CTT-----------TT-ATATTTTAAGTTTTATGGGGCATCAGGG---T-T-T-T
gi|12 : TGT--TTT--TATTGCATGTATTTACCAGTATTACAGAAATTT---TAT---TT--CGGCTGCTCACATTTTC--A--A--T--TC-A--ATT-----------TTTATATTTTAAGTTTTATGGGGCATCAGGG---T-T-T-T
gi|13 : ATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGTTAACATTT-------G--T--------------------------TATTTTATGTTTGATGAGGCATCAGGG---T-T-T-
gi|14 : TGTTTTAGAAATTT---TAG---CA--AGGCTGCTCATATTTTC--A--A--T--TT-AT-CCT-----------TCAATATTTTAAATTTTATGAGGCATAAGGG---T-
gi|15 : tttttTGTTTTAGAAATGT---TAG---CA--AGGCTGCTCATATTTTC--A--A--T--TTCA--CTT-----------TTAATACTTTAAATTTTATGAGGCATCCGGG---
gi|16 : tatttGCTGCTCACATTTTC--A--A--T--TCAA--CTT-----------TTG-TATTTTAAGTTTTATGGGGCATCAGGG---
gi|17 : A----AGT-AATTAGTTTTGGATTCAAATCCCAGCTTgt
gi|2 : TGTTTTTTAATGATGTTTGTTGCTGCATGGACAACCTAT--TTT--TAGTGCTTACAG----CA---TTAGAGAAACTT---TTG---TT--GAGCTGCTCATATTTTC--A--A--TCTT--A--CTT-----------TTAATGTTTTAAG-------AGGCATCAGAG---T-C-T-TN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TAAACATACAA----AGT-AATTAGTTTTGGATTCAAATGCCTGCTa
gi|3 : tctctatgattaatacacacacacatatatatataataTTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTTTTTATTGCTTGCAGTTACCAGTGTTACAGAATTTT---TTG---TT--GAGCTGCTAACATTTT-----------------------------------ATCTTTTAAGTTTTATGAGGCATCAGGG-----T-T-GT----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-A------TACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
gi|4 : tctataattaatatatatatatatataaaaTTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAA--TTG--TATTGCTTGCAGTTACCAGTGTTACGGAAATTT---TTG---TT--GAGCTGCTAACATTTTC--------T--T--A--CTT-----------TTAATATTTTAAGTTTTATGAGGCATAAGGG---T-T-T-TT----CG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCTCTTTAAAAAATATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGTAAATTAGTTTGGGATTCAAATCCCAGCTT
gi|5 : TGTTTTTTAATAATGCTTATTGCTGCATGGACAACATAT--TTT--TTTTA-TTGC--------------------TTT---TTG---TT--GAGCTGCTCACATCCTC--A--A--TCTT--A--CTT-----------TTAATATTTTAAGTTTTATGAGGCTTCAGAG---TCT-T-NN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-TTAGTGTTA
gi|6 : tctataattaatacatatatatataataGCTCCCATTTTCGCA--A--T--TT-C--CTT-----------TTTATAATTTAAGTTA-ATGAGGCATCAAAG---T-CAT-TTGTGCTT-ACTCTTTCTGCCTGCAATCTATT-AAAAATATATTTTATATACAATTATATATATTATATATATTTCCATGGACTGCAGTAAACAAT----GTTCTCTTCAAAAAG-CTGCTGTTACAAAGGTAGAGCGATTTAACATACAA----GGT-TGTCAGTTTTGGGTTCGAATCCCAGCT
gi|7 : TGTTTTTTAATAATGTTTGTTGCTAAATGGACAACATAT--TTC--TATTGCTTTCAGTAACAAGTGTTACAGAAATTT---TTG---AT--GAGCTGCTCACATATTC--A--ATCT--T--A--CTTTTAATTCTTACTTAATGTTTTAAGTTTTATGAGGCATCAg
gi|8 : tctatatatatatatataaCATTTTC--ACAA--T--TT-C--CTT-----------TTAATAATTTAAGCTT-ATGAAGCATAAAGGGCAT-T-TGTT----CTTACTCTTTCTGACTGCGATCCATTCAAAAA--------ATATATAAT-ATATACA--------ATTTCCATGGACTGCAGTTAACAATACATGTTCTCTTTGAAAAtag
gi|9 : ATGT--TTT--TTTTGCATGTATTTACTAGTATAACAGAAATTTAATTTGGACTT--AATTTGCTCACATTTTT--A--A--T--T--AAACTT-----------TTA-TATTTTAAGTTTTATGGGGCATAAGGG---T-T-T-T
Alignments
lowQualScore : 2222222 11111111111 1111111 222222222222222222222222222222222 1111
lowQualScore : 55 55 0 1 0 999 555 44 2 33333 0000000 11111111111 8 3 444 3 3 3 6666666 1 0 0 5 111111111111111111111111111111111 1 8888 6 8 4444 6
lowQualScore : .. .. . . . ... ... .. . ..... ....... ........... . . ... . . . ....... . . . . ................................. . .... . . .... .
lowQualScore : 55 55 5 4 2 666 444 22 0 99999 2222222 99999999999 1 2 777 1 3 3 6666666 0 1 1 0 444444444444444444444444444444444 0 3333 7 0 2222 7
consensus : TTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTT--TATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGCTCACATTTTC--A--AT-T-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCATCAGGG---T-T-T-TT----CT-ACTCTTTCTGNCTGCGATCCATTCAAAAA--------ATATACAAT-ATATACA--------ATTTCCATGGACTGCAGTNAACAATACATGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
Reference ( family-611 ) : TTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTT--TATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGCTCACATTTTC--A--AT-T-C-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCATCAGGG---T-T-T-TT----CT-ACTCTTTCTGNCTGCGATCCATTCAAAAA--------ATATACAAT-ATATACA--------ATTTCCATGGACTGCAGTNAACAATACATGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
gi|1 : TCTGATTTTTAATAATGTTTGTTGCTGCATGGACAACATATGTTTT--TCTTGCTTGCAGTTACCAGTGTTACACAATTTT---TTG---TT--GAGCTGCTAACATTTCC--A--ATCT-T-A-CTG-----------TTTATATTTTAAGATTGATGAAGCATCAGTG---T-T-T-TN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-ATAGTGTTATAAAGGTAGAGTGA-TTAATATACAACTTTAGT-AATTAGTTTTGGAATCAAATCCCAGCTT
gi|10 : tctataattaatacatatacgtatttaaagT--TTT--TATTGCATGCATTTACCAATATTA-ATAAAGTT---TTA---TTTTG-GCTACTAACATTTTC--A--AT-T-CAA-CTT-----------TT-ATATTTTAAGTTTAATAGAGCATCAGTG---T-T-T-T
gi|11 : aatgtTGT--TTT--TATTACATTTATTTACCAGTATTACAGAAATTTAA-TT----TT--G-GCTGCTCATATTTTC--A--AT-T-C-AACTT-----------TTA-TATTTTAAGTTTTATGGGGCATCAGGG---T-T-T-T
gi|12 : TGT--TTT--TATTGCATGTATTTACCAGTATTACAGAAATTT---TAT---TT--CGGCTGCTCACATTTTC--A--AT-T-C-A-ATT-----------TTTATATTTTAAGTTTTATGGGGCATCAGGG---T-T-T-T
gi|13 : ATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGTTAACATTT-------GT-------------------------TATTTTATGTTTGATGAGGCATCAGGG---T-T-T-
gi|14 : TGTTTTAGAAATTT---TAG---CA--AGGCTGCTCATATTTTC--A--AT-T-T-ATCCT-----------TCAATATTTTAAATTTTATGAGGCATAAGGG---T-
gi|15 : tttttTGTTTTAGAAATGT---TAG---CA--AGGCTGCTCATATTTTC--A--AT-TTC-A-CTT-----------TTAATACTTTAAATTTTATGAGGCATCCGGG---
gi|16 : tatttGCTGCTCACATTTTC--A--AT-T-CAA-CTT-----------TT-GTATTTTAAGTTTTATGGGGCATCAGGG---
gi|17 : A----AGT-AATTAGTTTTGGATTCAAATCCCAGCTTgt
gi|2 : TGTTTTTTAATGATGTTTGTTGCTGCATGGACAACCTAT--TTT--TAGTGCTTACAG----CA---TTAGAGAAACTT---TTG---TT--GAGCTGCTCATATTTTC--A--ATCT-T-A-CTT-----------TTAATGTTTTAAG-------AGGCATCAGAG---T-C-T-TN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TAAACATACAA----AGT-AATTAGTTTTGGATTCAAATGCCTGCTa
gi|3 : tctctatgattaatacacacacacatatatatataataTTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTTTTTATTGCTTGCAGTTACCAGTGTTACAGAATTTT---TTG---TT--GAGCTGCTAACATTTT--------------------------------ATCTTTTAAGTTTTATGAGGCATCAGGG-----T-T-GT----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-A------TACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
gi|4 : tctataattaatatatatatatatataaaaTTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAA--TTG--TATTGCTTGCAGTTACCAGTGTTACGGAAATTT---TTG---TT--GAGCTGCTAACATTTTC--------T-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCATAAGGG---T-T-T-TT----CG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCTCTTTAAAAAATATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGTAAATTAGTTTGGGATTCAAATCCCAGCTT
gi|5 : TGTTTTTTAATAATGCTTATTGCTGCATGGACAACATAT--TTT--TTTTA-TTGC--------------------TTT---TTG---TT--GAGCTGCTCACATCCTC--A--ATCT-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCTTCAGAG---TCT-T-NN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-TTAGTGTTA
gi|6 : tctataattaatacatatatatataataGCTCCCATTTTCGCA--AT-T-T-C-CTT-----------TTTATAATTTAAGTTA-ATGAGGCATCAAAG---T-CAT-TTGTGCTT-ACTCTTTCTGCCTGCAATCTATT-AAAAATATATTTTATATACAATTATATATATTATATATATTTCCATGGACTGCAGTAAACAAT----GTTCTCTTCAAAAAG-CTGCTGTTACAAAGGTAGAGCGATTTAACATACAA----GGT-TGTCAGTTTTGGGTTCGAATCCCAGCT
gi|7 : TGTTTTTTAATAATGTTTGTTGCTAAATGGACAACATAT--TTC--TATTGCTTTCAGTAACAAGTGTTACAGAAATTT---TTG---AT--GAGCTGCTCACATATTC--A--ATCT-T-A-CTTTTAATTCTTACTTAATGTTTTAAGTTTTATGAGGCATCAg
gi|8 : tctatatatatatatataaCATTTTC--ACAAT-T-T-C-CTT-----------TTAATAATTTAAGCTT-ATGAAGCATAAAGGGCAT-T-TGTT----CTTACTCTTTCTGACTGCGATCCATTCAAAAA--------ATATATAAT-ATATACA--------ATTTCCATGGACTGCAGTTAACAATACATGTTCTCTTTGAAAAtag
gi|9 : ATGT--TTT--TTTTGCATGTATTTACTAGTATAACAGAAATTTAATTTGGACTT--AATTTGCTCACATTTTT--A--AT-TAA-A-CTT-----------TT-ATATTTTAAGTTTTATGGGGCATAAGGG---T-T-T-T
Alignments
lowQualScore : 1111111 11111111111 1111111 222222222222222222222222222222222 1111
lowQualScore : 55 55 0 1 0 999 555 44 2 33333 6666666 11111111111 5 3 444 3 3 3 6666666 1 0 0 5 111111111111111111111111111111111 1 8888 6 8 4444 6
lowQualScore : .. .. . . . ... ... .. . ..... ....... ........... . . ... . . . ....... . . . . ................................. . .... . . .... .
lowQualScore : 55 55 5 4 2 666 444 22 0 99999 9999999 99999999999 0 2 777 1 3 3 6666666 0 1 1 0 444444444444444444444444444444444 0 3333 7 0 2222 7
consensus : TTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTT--TATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGCTCACATTTTC--A--AT-T-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCATCAGGG---T-T-T-TT----CT-ACTCTTTCTGNCTGCGATCCATTCAAAAA--------ATATACAAT-ATATACA--------ATTTCCATGGACTGCAGTNAACAATACATGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
Reference ( family-611 ) : TTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTT--TATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGCTCACATTTTC--A--AT-T-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCATCAGGG---T-T-T-TT----CT-ACTCTTTCTGNCTGCGATCCATTCAAAAA--------ATATACAAT-ATATACA--------ATTTCCATGGACTGCAGTNAACAATACATGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
gi|1 : TCTGATTTTTAATAATGTTTGTTGCTGCATGGACAACATATGTTTT--TCTTGCTTGCAGTTACCAGTGTTACACAATTTT---TTG---TT--GAGCTGCTAACATTTCC--A--ATCT-T-A-CTG-----------TTTATATTTTAAGATTGATGAAGCATCAGTG---T-T-T-TN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-ATAGTGTTATAAAGGTAGAGTGA-TTAATATACAACTTTAGT-AATTAGTTTTGGAATCAAATCCCAGCTT
gi|10 : tctataattaatacatatacgtatttaaagT--TTT--TATTGCATGCATTTACCAATATTA-ATAAAGTT---TTA---TTTTG-GCTACTAACATTTTC--A--AT-T-C-AACTT-----------TTA-TATTTTAAGTTTAATAGAGCATCAGTG---T-T-T-T
gi|11 : aatgtTGT--TTT--TATTACATTTATTTACCAGTATTACAGAAATTTAA-TT----TT--G-GCTGCTCATATTTTC--A--AT-T-C-AACTT-----------TTA-TATTTTAAGTTTTATGGGGCATCAGGG---T-T-T-T
gi|12 : TGT--TTT--TATTGCATGTATTTACCAGTATTACAGAAATTT---TAT---TT--CGGCTGCTCACATTTTC--A--AT-T-C-A-ATT-----------TTTATATTTTAAGTTTTATGGGGCATCAGGG---T-T-T-T
gi|13 : ATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGTTAACATTT-------GT-------------------------TATTTTATGTTTGATGAGGCATCAGGG---T-T-T-
gi|14 : TGTTTTAGAAATTT---TAG---CA--AGGCTGCTCATATTTTC--A--AT-T-T-ATCCT-----------TCAATATTTTAAATTTTATGAGGCATAAGGG---T-
gi|15 : tttttTGTTTTAGAAATGT---TAG---CA--AGGCTGCTCATATTTTC--A--AT-T-TCA-CTT-----------TTAATACTTTAAATTTTATGAGGCATCCGGG---
gi|16 : tatttGCTGCTCACATTTTC--A--AT-T-CAA-CTT-----------TT-GTATTTTAAGTTTTATGGGGCATCAGGG---
gi|17 : A----AGT-AATTAGTTTTGGATTCAAATCCCAGCTTgt
gi|2 : TGTTTTTTAATGATGTTTGTTGCTGCATGGACAACCTAT--TTT--TAGTGCTTACAG----CA---TTAGAGAAACTT---TTG---TT--GAGCTGCTCATATTTTC--A--ATCT-T-A-CTT-----------TTAATGTTTTAAG-------AGGCATCAGAG---T-C-T-TN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TAAACATACAA----AGT-AATTAGTTTTGGATTCAAATGCCTGCTa
gi|3 : tctctatgattaatacacacacacatatatatataataTTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTTTTTATTGCTTGCAGTTACCAGTGTTACAGAATTTT---TTG---TT--GAGCTGCTAACATTTT--------------------------------ATCTTTTAAGTTTTATGAGGCATCAGGG-----T-T-GT----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-A------TACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
gi|4 : tctataattaatatatatatatatataaaaTTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAA--TTG--TATTGCTTGCAGTTACCAGTGTTACGGAAATTT---TTG---TT--GAGCTGCTAACATTTTC--------T-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCATAAGGG---T-T-T-TT----CG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCTCTTTAAAAAATATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGTAAATTAGTTTGGGATTCAAATCCCAGCTT
gi|5 : TGTTTTTTAATAATGCTTATTGCTGCATGGACAACATAT--TTT--TTTTA-TTGC--------------------TTT---TTG---TT--GAGCTGCTCACATCCTC--A--ATCT-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCTTCAGAG---TCT-T-NN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-TTAGTGTTA
gi|6 : tctataattaatacatatatatataataGCTCCCATTTTCGCA--AT-T-T-C-CTT-----------TTTATAATTTAAGTTA-ATGAGGCATCAAAG---T-CAT-TTGTGCTT-ACTCTTTCTGCCTGCAATCTATT-AAAAATATATTTTATATACAATTATATATATTATATATATTTCCATGGACTGCAGTAAACAAT----GTTCTCTTCAAAAAG-CTGCTGTTACAAAGGTAGAGCGATTTAACATACAA----GGT-TGTCAGTTTTGGGTTCGAATCCCAGCT
gi|7 : TGTTTTTTAATAATGTTTGTTGCTAAATGGACAACATAT--TTC--TATTGCTTTCAGTAACAAGTGTTACAGAAATTT---TTG---AT--GAGCTGCTCACATATTC--A--ATCT-T-A-CTTTTAATTCTTACTTAATGTTTTAAGTTTTATGAGGCATCAg
gi|8 : tctatatatatatatataaCATTTTC--ACAAT-T-T-C-CTT-----------TTAATAATTTAAGCTT-ATGAAGCATAAAGGGCAT-T-TGTT----CTTACTCTTTCTGACTGCGATCCATTCAAAAA--------ATATATAAT-ATATACA--------ATTTCCATGGACTGCAGTTAACAATACATGTTCTCTTTGAAAAtag
gi|9 : ATGT--TTT--TTTTGCATGTATTTACTAGTATAACAGAAATTTAATTTGGACTT--AATTTGCTCACATTTTT--A--AT-TAA-A-CTT-----------TT-ATATTTTAAGTTTTATGGGGCATAAGGG---T-T-T-T
blockSeqs : . TT T AAT GAC TT G GCA TCAA TTAATTCTTAC A A GCA C A G GTGCTT N N TATATTTTATATACAATTATATATATTATATAT N NNNN T T . A
blockSeqs : . . T AA . . A ACA TCAA . A T . . . . CTT N N NNNNNNNNNNNNNNNN N NNNN . . . .
blockSeqs : . . T . . . G A TTAT . T T . . . . NN N N NNNNNNNNNNNNNNNN N NNNT . . . .
blockSeqs : . . G . . . G A TTCA . A G . . . . NN N N NNNNNNNNNNNNNNNN N NNNN . . . .
blockSeqs : . . G . . . A A TCAA . A T . . . . CG C C NNNNNNNNNNNNNNNN A ACAT . . .
blockSeqs : . . G . . . A A CTTA . A T . . . . NN A . ATATATAATATATACA T .
blockSeqs : . . G . . . A A CTTA . A T . . . .
blockSeqs : . . G . . . A A CTTA . A T . . . .
blockSeqs : . . T . . . A A TAAA . T T . . . .
blockSeqs : . . . . A A TCA . A T . . . .
blockSeqs : . . . . A TTA . A T . . . .
blockSeqs : . . . . A TTC . . T . .
blockSeqs : . TTC . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqCons : ** ****
originalCons : TTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTT--TATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGCTCACATTTTC--A--AT-T-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCATCAGGG---T-T-T-TT----CT-ACTCTTTCTGNCTGCGATCCATTCAAAAA--------ATATACAAT-ATATACA--------ATTTCCATGGACTGCAGTNAACAATACATGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
finalCons : TTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTT--TATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGCTCACATTTTC--A--AT-T-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCATCAGGG---T-T-T-TT----CT-ACTCTTTCTGNCTGCGATCCATTCAAAAA--------ATATACAAT-ATATACA--------ATTTCCATGGACTGCAGTNAACAATACATGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
Alignments
lowQualScore : 1111111 11111111111 1111111 222222222222222222222222222222222 1111
lowQualScore : 55 55 0 1 0 999 555 44 2 33333 6666666 11111111111 5 3 444 3 3 3 6666666 1 0 0 5 111111111111111111111111111111111 1 8888 6 8 4444 6
lowQualScore : .. .. . . . ... ... .. . ..... ....... ........... . . ... . . . ....... . . . . ................................. . .... . . .... .
lowQualScore : 55 55 5 4 2 666 444 22 0 99999 9999999 99999999999 0 2 777 1 3 3 6666666 0 1 1 0 444444444444444444444444444444444 0 3333 7 0 2222 7
consensus : TTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTT--TATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGCTCACATTTTC--A--AT-T-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCATCAGGG---T-T-T-TT----CT-ACTCTTTCTGNCTGCGATCCATTCAAAAA--------ATATACAAT-ATATACA--------ATTTCCATGGACTGCAGTNAACAATACATGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
Reference ( family-611 ) : TTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTT--TATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGCTCACATTTTC--A--AT-T-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCATCAGGG---T-T-T-TT----CT-ACTCTTTCTGNCTGCGATCCATTCAAAAA--------ATATACAAT-ATATACA--------ATTTCCATGGACTGCAGTNAACAATACATGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
gi|1 : TCTGATTTTTAATAATGTTTGTTGCTGCATGGACAACATATGTTTT--TCTTGCTTGCAGTTACCAGTGTTACACAATTTT---TTG---TT--GAGCTGCTAACATTTCC--A--ATCT-T-A-CTG-----------TTTATATTTTAAGATTGATGAAGCATCAGTG---T-T-T-TN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-ATAGTGTTATAAAGGTAGAGTGA-TTAATATACAACTTTAGT-AATTAGTTTTGGAATCAAATCCCAGCTT
gi|10 : tctataattaatacatatacgtatttaaagT--TTT--TATTGCATGCATTTACCAATATTA-ATAAAGTT---TTA---TTTTG-GCTACTAACATTTTC--A--AT-T-C-AACTT-----------TTA-TATTTTAAGTTTAATAGAGCATCAGTG---T-T-T-T
gi|11 : aatgtTGT--TTT--TATTACATTTATTTACCAGTATTACAGAAATTTAA-TT----TT--G-GCTGCTCATATTTTC--A--AT-T-C-AACTT-----------TTA-TATTTTAAGTTTTATGGGGCATCAGGG---T-T-T-T
gi|12 : TGT--TTT--TATTGCATGTATTTACCAGTATTACAGAAATTT---TAT---TT--CGGCTGCTCACATTTTC--A--AT-T-C-A-ATT-----------TTTATATTTTAAGTTTTATGGGGCATCAGGG---T-T-T-T
gi|13 : ATTGCTTGCAGTTACCAGTGTTACAGAAATTT---TTG---TT--GAGCTGTTAACATTT-------GT-------------------------TATTTTATGTTTGATGAGGCATCAGGG---T-T-T-
gi|14 : TGTTTTAGAAATTT---TAG---CA--AGGCTGCTCATATTTTC--A--AT-T-T-ATCCT-----------TCAATATTTTAAATTTTATGAGGCATAAGGG---T-
gi|15 : tttttTGTTTTAGAAATGT---TAG---CA--AGGCTGCTCATATTTTC--A--AT-T-TCA-CTT-----------TTAATACTTTAAATTTTATGAGGCATCCGGG---
gi|16 : tatttGCTGCTCACATTTTC--A--AT-T-CAA-CTT-----------TT-GTATTTTAAGTTTTATGGGGCATCAGGG---
gi|17 : A----AGT-AATTAGTTTTGGATTCAAATCCCAGCTTgt
gi|2 : TGTTTTTTAATGATGTTTGTTGCTGCATGGACAACCTAT--TTT--TAGTGCTTACAG----CA---TTAGAGAAACTT---TTG---TT--GAGCTGCTCATATTTTC--A--ATCT-T-A-CTT-----------TTAATGTTTTAAG-------AGGCATCAGAG---T-C-T-TN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-ATAGTGTTACAAAGGTAGAGTGA-TAAACATACAA----AGT-AATTAGTTTTGGATTCAAATGCCTGCTa
gi|3 : tctctatgattaatacacacacacatatatatataataTTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAT--TTTTTTATTGCTTGCAGTTACCAGTGTTACAGAATTTT---TTG---TT--GAGCTGCTAACATTTT--------------------------------ATCTTTTAAGTTTTATGAGGCATCAGGG-----T-T-GT----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-A------TACAAAGGTAGAGTGA-TTAATATACAA----AGT-AATTAGTTTTGGATTCAAATCCCAGCTT
gi|4 : tctataattaatatatatatatatataaaaTTTGTTTTTTAATAATGTTTGTTGCTGCATGGACAACATAA--TTG--TATTGCTTGCAGTTACCAGTGTTACGGAAATTT---TTG---TT--GAGCTGCTAACATTTTC--------T-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCATAAGGG---T-T-T-TT----CG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCTCTTTAAAAAATATAGTGTTACAAAGGTAGAGTGA-TTAATATACAA----AGTAAATTAGTTTGGGATTCAAATCCCAGCTT
gi|5 : TGTTTTTTAATAATGCTTATTGCTGCATGGACAACATAT--TTT--TTTTA-TTGC--------------------TTT---TTG---TT--GAGCTGCTCACATCCTC--A--ATCT-T-A-CTT-----------TTAATATTTTAAGTTTTATGAGGCTTCAGAG---TCT-T-NN----NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNN-NNNNNNN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTTTAAAAAG-TTAGTGTTA
gi|6 : tctataattaatacatatatatataataGCTCCCATTTTCGCA--AT-T-T-C-CTT-----------TTTATAATTTAAGTTA-ATGAGGCATCAAAG---T-CAT-TTGTGCTT-ACTCTTTCTGCCTGCAATCTATT-AAAAATATATTTTATATACAATTATATATATTATATATATTTCCATGGACTGCAGTAAACAAT----GTTCTCTTCAAAAAG-CTGCTGTTACAAAGGTAGAGCGATTTAACATACAA----GGT-TGTCAGTTTTGGGTTCGAATCCCAGCT
gi|7 : TGTTTTTTAATAATGTTTGTTGCTAAATGGACAACATAT--TTC--TATTGCTTTCAGTAACAAGTGTTACAGAAATTT---TTG---AT--GAGCTGCTCACATATTC--A--ATCT-T-A-CTTTTAATTCTTACTTAATGTTTTAAGTTTTATGAGGCATCAg
gi|8 : tctatatatatatatataaCATTTTC--ACAAT-T-T-C-CTT-----------TTAATAATTTAAGCTT-ATGAAGCATAAAGGGCAT-T-TGTT----CTTACTCTTTCTGACTGCGATCCATTCAAAAA--------ATATATAAT-ATATACA--------ATTTCCATGGACTGCAGTTAACAATACATGTTCTCTTTGAAAAtag
gi|9 : ATGT--TTT--TTTTGCATGTATTTACTAGTATAACAGAAATTTAATTTGGACTT--AATTTGCTCACATTTTT--A--AT-TAA-A-CTT-----------TT-ATATTTTAAGTTTTATGGGGCATAAGGG---T-T-T-T