lowQualScore : 222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33 1 77777 1 22 888888888888888888888888888888888 11 33333333 222 5555 2 2222 1 111 11 3333 55555555555 2222 3333 1111 111 7777777777777777 1 1 4444444444 333333333 1 111 333333 11 11 1 33333333333 1 3333333 1 11111 1 222 2 4444444444444 111111 11 1 333333333333333 1111 2222222222222222 777777777777777777777777 1111111111 3333333 111111 3333333333333 1 111 1111 2222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 1 1111 11 2222222 1111 111
lowQualScore : 44 6 6 5 11111 6 6 7 6 33 6 111111111111111111111111111111111 22 6 22222222 444 0000 3 6 5555 7 5 000 88 6 4 5555 7 3 11111111111 8888 88 3 2222 55 4444 55 3 3 3 333 3 3 4444444444444444 4 6 55 6 5 4 7 8 0 8 2 2222222222 222222222 77 3 2 333 8 666666 22 6 3 44 11 6 0 22222222222 3 6 7 4444444 2 0 88888 2 999 77 2 4 0 7 6 3333333333333 7 9 8 444444 33 7 0 9999 0 1 2 666666666666666 0 3 7777 777 5 1 0 8888888888888888 5 2 666666666666666666666666 33 2 1 3333333333 6666666 11 444444 0 2 3 66 9999999999999 888 0 1 4 1 44 3 5 888 1 2 5 77 44 5555 5 6 2 1111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 666 0 3 5 1 1 1 4444 55 5 44 4 0 0 22 0 5 66 5 4444444 2222 77 000 4 1
lowQualScore : .. . . . ..... . . . . .. . ................................. .. . ........ ... .... . . .... . . ... .. . . .... . . ........... .... .. . .... .. .... .. . . . ... . . ................ . . .. . . . . . . . . .......... ......... .. . . ... . ...... .. . . .. .. . . ........... . . . ....... . . ..... . ... .. . . . . . ............. . . . ...... .. . . .... . . . ............... . . .... ... . . . ................ . . ........................ .. . . .......... ....... .. ...... . . . .. ............. ... . . . . .. . . ... . . . .. .. .... . . . .... ..................................................................................................................................................................................... . ... . . . . . . .... .. . .. . . . .. . . .. . ....... .... .. ... . .
lowQualScore : 00 0 0 0 00000 0 0 0 0 00 0 000000000000000000000000000000000 00 0 00000000 000 5555 0 0 3333 7 0 000 33 0 7 3333 3 7 00000000000 5555 00 0 5555 00 5555 55 0 0 0 000 0 0 5555555555555555 7 7 77 0 3 7 0 3 0 8 2 0000000000 000000000 66 2 8 000 0 222222 44 0 2 44 00 5 0 11111111111 3 7 3 3333333 0 7 00000 0 000 00 5 7 3 3 7 3333333333333 3 5 8 888888 88 0 0 2222 8 2 0 222222222222222 8 5 8888 222 0 4 8 2222222222222222 0 5 222222222222222222222222 22 5 7 2222222222 7777777 66 444444 4 0 8 99 6666666666666 888 1 2 4 1 66 6 1 999 1 1 1 22 66 0000 7 3 2 0000 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 999 3 1 3 2 0 3 2222 99 0 11 4 3 2 33 7 8 11 3 9999999 1111 99 000 9 7
consensus : CTGATAACAATTCTGGAATTATATATTTTGCTTTATAGCGAAGTTGCAAGAACAGTAATTGGTACTACCCGATCG----------CT----TATGTAGGGAGTAAGGTTACGTCTCACATGCAGAGATGAGAATNCTGCAACACAAATT-ACGTTNATGTA-AAAGCTACTC--ATAATATGNTCCC---TTCTTATATATNA---ACCT-A-CCCTTCTTACNTGNNGGNGAAAANATNTANNACATCNTNNANNANATANTANTGNNATCGACANTCCAATCACAGGGACT-AA-TNAGCCGCANGTCATGTATACCCTCATCTATTTCAGCTT-GANCTCGTTACCTAACG-AGCTCAGAGACACTGCTACAGTATCGA--C-------TTTTAA---------ATCTAGAATAAAGGCCTATCTTCCAGAAGTAGTTA-ATCC-CCC--TCTTACTATAGTGATGGT--CANAGATACA-TA-TCTG-C----TATGCATGCAAGATTGCGA-ACAAAATGTAGCAACTTGA--AATGACCTTTACCTTAATCATCT-ACG-GACGAACCTTTTTGNNCNTGNT-AAATTCTATAGAATATACT-AT-ATTA--TTTTTAGCTGCAAT-NTT--TTT--AGGAA-CCGGAGAATCGTCTTATTTAACTCGACT-AGGAGTTTTCACCCGTTNAATTCCGAGCTTCTTTTATTTGGAAATACTGCACTTTCCGTTG---ATGANAATATTGTTGTCTTCANAGCGGTTCACGAATACAT------------AAAACAACNAGTCGTTTCAAANAGTCTTAAAA--TGACGG-CTCATTGTCA----CGCAAGAAATATATTA-----TTTTGCCGGTTATATTTAAANCAAA--TGTATCNTAANTAGTTTTNAAAT---CCAAGTACCTGACTAAAC-AGACAA-TAAACCTATCCGCTATCTTGTCNTTCTGCTAGNCTGTN---TTACTG-TCGTTTATT---NTTTCT-----------AC--TTAT-C---TGTTGTTTCT---TT--TCATT-T--TT----CTTTCCGTT--TCT-----A-N--TCTT---C------TTCTN-----------TTTA-TA-TAA-AC---AG---CTN--N---ATGCA--TTGT-GACAACGTCGAT-TGT--CGTTTA---ATACGTAG-CCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGNGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCGACCC-ATTTGCTGTA--TACATG-TA----TA----T--ATTG---GCAATAAAATATGTTTAAACCA
Reference ( gi|1 ) : CTGAATATAATTCTGAAATGAT-TGAATTACTTCAAAACGAAGCAGCAAGAATAGTAA------CCACCCAATCGATCTCCTTAGCTAATCTATACAGAGAGTGTGGATGGGTCTCTCTTGCAGAGATGAGAA-A--GCAGCATAAATTGATATTTATGTACAAAGCTACTC--ATAACATGATCCC---GTCTTATATATCA--GACTTTATCCCTTCT--TCTGTAGGAGAAAAC--GTACCATATTCCTTAAGAAATAATAATGATGTAAATATTCCAATTACTCGGACTGAACTAAGCCGCAAATCATGTATACCCTCATCTATTTCAGTTTTGAACTCTTTACCAAACG-AGCTCAGAAATACTGCTACAGTATCGA--T-------TTTTAA---------ATCTAGATTAAAGGCCTATCTTCTAGAAGTAGTTA-ATCCTACC--TCTTACTATAGTTATGGT--CAGAGATATA-TA-GCTG-C----TATGCATGCAAGATTGCGA-ACCAAATGTAGCAACTTGAACAATGACCTTTACCTTAATCACCT-ACGCGATGACCCTCACTGTACCTGTTCAAATTCTATAGAAGATGCAGATCATTACCTTTTTAGATGCAAT-CTT--TTT--AGGAA-CCAGATAATCGTCTTATTTGACTCGACT-AGAAATTTTCACCCATTAAATGCAGAGCTTCTTTTATTTGGAAAGACTGCACTTTCTATTG---ATGAAAACATTGTTGTTTTCACAGCGGTTCACGAATATAT-----------TAAAACAACAAGTCGTTTCAAAGAGTCTTAAAA--TAACAG-CTCATTGTCA----TTTAAGAAATATATTA-----TTTTGCCGGTTATATTTAAAACAAA--TGTATCTTAAATAGCTTTTAAAT---CTAAGTACCTGACTTAAC-AGACAA-TAAATCTATCTTATATCTTATCTTTTTGCTAATCTATA---TTACTA-TCGCTCATT---CTTTCT-----------AC--TTACACA--TGTTGTTTCT---TT--TCATTAT-ATT----CTTTCCACT--TCT-----A-A--TTTT---C------TTCTG-----------TTTA-TA-TAA-AC---AG---CTA--A---ATGCA--TTGT-GACAACCTTAAT-TGT--CGTTTA---GTACATAG-CCATTGTCAATTGAATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTATA--TACATG-TA----TA----T--ATTG---GCAATAAAATATGTTTAAACCA
gi|5 : CTGATAACAATTCTGGAATTATATATTTTGCTTTATAGCGAAGTTGCAAGAACAGTAATTGGTACTACCCGATCG----------CT----TATGTAGGGAGTAAGGTTACGTCTCACATGCAGAGATGAGAATACTGCA-CACAAACT---ATGTATGTAAAAAGTTACTC--ATGATATGTTTTA---TTCTTATATGTTA-------------TTCTTATATGTTAGAGAAAAA--TTAACACATCATGGAATACATACTAATAAAATCGATATTCCAAT--------------TAAGCCGCTTGGCTTGTATAGGATCATCTATTTTCGCTTTGATGTAGTTGCCTGATG-GGATCAGAGACACTGTTTAAGTATCGA--C-------TTTTAAAACGGAAATATCTAGATTTAAGGCCTATCTGC---AAGCA-TTATATCC--CCAATTTGTCTAAAGCGTTGGT--CACAGATACA-TA-TCTG-
gi|21 : aGAGAA-C--GCAACACAAATTTATGTTAATGTACAAAGC-A-TCAAATAATATGGTCCC---TTCCTATA-ATAAGCGACTTGATTCCTTC
gi|4 : aaagactgAAAT-GACATTGATGTA-AAAGCTGCTC--ATAATATGACCCCTACATATTATATACCA--CACCTTAACCCTTCT--CCTGAAGACGAAAACATGTACAATATTCTTTACGAAATAATACTGCTATAAACAGTCCA-TCACAGGGACTTAAGTGAAC-GCAGGTCATGCATACCCTTAACAATTCCAGCTT-GAGCTCGTTACCTAATGCAG-TCAGAAACATAGTTACAGTATCGACTT-------TTTTAG---------ATCTAGCATAAAGGCTTATCTTCCAGAAGAAGCAA-GTCTCCCT--TCTTCTTATA-TTGTTGC--CACAGATGCG-TA-TCGG-CCTTGTATGTATGTAAGCTTACGACACAAAATGTAGCAATTTGAGCAATGACTTTTATCTCAATCACCT-GAGAAACGATCCCTTTTGTACATGCTGAAA-TCCGTAGTATAAACTTATCATTA-CTTGTTAGTTGCAAT-AAT--TTT--AGG-A-CC-------CGTTTTATATAACTCGACT-AG
gi|2 : GACTGAACTTAGCCGCAAATCATGTATACCCTCATCTATTTCAGCTTGGAACTCTTTACCAAACG-AGCTCATAGATATTGCTACAGTATCGA--CTTCTAAATTCTAA---------ATCTAGAATAAAGGCCTATCTTCCAGAAGTAGTTA-ATCC-ACCT-TCTTACTATAATGATGGTCACAGATATATA-TA-TCTG-C----TATGCAAGCACGACTGCGA-ACCAAATGTAGCAACTTGA------ACCTTAACCTTAATCATCT-ACGCGATGAACCT
gi|19 : ACG-AGCTCAGAGATACTGCTACAGTATCGA--C-------TTTTAA---------GTCTAGATTAAAGGCCTATCTTCCAGAAGTAG-TA-ATCCGCCC--TCTTAATATAGTGATGGT--Ctgttttaggaaccagagaatcgttttatttgactctactagaaatgttcatccgttaaatgcagagcttcttttatttgcaaagactgtactttccgttgatgacaaattgttgttttcacagcggtttacaacaagtcgtttcaaagagtcctaaatgacagctcattgtcacacaagaaatttatattttgccggttatatttaaaacaaatgtattttaaatagtttttaaatccaatttcttgactaaacagacaattaatctatcttatatcttatctttctgct
gi|3 : -------TTTAAA---------ATCTAGTATAAAGAC-TATCTTTCAGAAGTAAT-A-ACCTTTCA--TTTTATTG-AGTT--GGT--CTAAGATATAATATATTGTC----TATGCATGCAATATTGTGA-AAAAAA-GTAGTAA-------AATGAC-TTTACCATAATCATCTTACA-GATGAACCTTTTTGACCCTGATTATATTATATAGACTAT----AT-ATTTC--TTTTAGCTGAAATACTT--TTT--AGGGA-CTAGATAACCGTCTTATCTAACTCGACTGAGGAGTTT-----CATTTAATTCTGAGTTTCTTTTATTTTGAAATACTGCACTTTCTGTTG---ATTACAATATAGTTGTCTTCAAAGCGGTTCTTGAAAACAT-----------AAAAACAAGCAGTGGTTTCAAATAGTTTTGAA-------------ATTGTCA----TT---GAAACAAACTACACATTTTTGCCGCTTAT-----------A--TGTATCATAA----------------CTAAACA---GACTATAT-AGACAT-TAAGCCTAAC-----TGTTGTCATTCTACAAGTCTGTC---TTACTG-AAG-TAAGT----TTTCA-----------AC--TT-TAGA--TGTTTCTTCT---T------------CT----TTTTCCATTCGTCT----------TGTT---C------TTCT
gi|6 : TGTT-AAATTCTATAGAAGATACTGATAGTTAAATTTT-AACTGCAAT-ATT--TTTCTAGGAAACCGGAGAATCGTCTTTCTCAACTCGAC------------------TAAA----GAGTTTCACCCATT---AAATTCTGAACTT-CT----------------TTGTCGTCTGCAAAGCGGTTCACGAATACATTGTCAAGTATATAAAACAATCAGTCGCTACAAACAGTCTTAACAGTTATTGGATTGATTGTCACTGGTCTACGTAACAC-TT------TTTTGCCGATTATATTTAAGTTATA--TGCATT----ATA-CATTGAAAT---ATGTGTACCTGAATAAAC-AAACAGTTAAACCTATCTGCTGTCTTTTCTTCCTGCTAGACTGTC---TAACTG-TTGTTCATT---CTTTCT-----------CCAGTTAT-C---TGTT-TTTCT---CT--TCAT------------TTTCCA-----TT-----A-A--TCTTGTCC------TTCT
gi|2 : ttGATG-AAC-CTTGTTTT--AGGAA-CCAGAGAATCGTTTTATTTGACTCTACT-AGAAATGTTCATCCGTTAAATGCAGAGCTTCTTTTATTTGCAAAGACTGTACTTTCCGTTG---ATGACAA-ATTGTTGTTTTCACAGCGGTTT-------------------------ACAACAAGTCGTTTCAAAGAGTCCT-AAA--TGACAG-CTCATTGTCA----CACAAGAAATTTA-TA-----TTTTGCCGGTTATATTTAAAACAAA--TGTATTTTAAATAGTTTTTAAAT---CCAATTTCTTGACTAAAC-AGACAA-TTAATCTATCTTATATCTTATCTTTCTGCTtta
gi|8 : gactgaacttagccgcaaatcatgtataccctcatctatttcagcttggaactctttaccaaacgagctcatagatattgctacagtatcgacttctaaattctaaatctagaataaaggcctatcttccagaagtagttaatccaccttcttactataatgatggtcacagatatatatatctgctatgcaagcacgactgcgaaccaaatgtagcaacttgaaccttaaccttaatcatctacgcTTTCACCCATCCATTTCCGAGCTTCCTATATTTAAAAAGATTTCACTTTCCAGTG---AT-AAAATTTCGTTGTATTCACAGCTGTTCATGAGTATAT--------------AATAACAAGGCGTTTATAAGAGTCTTAAAA--TAGCTG--TCAGTGTCA----AGCAAGAAATATCTTA-----TTTTTCCGGTCATATCTCAGTTAAA--TGTATTATAAGTTGTTTCGAAATAAAAAAAATAAC-GTCTAAAC-AAACAA-T-------TCTGCTATCATGCCTTTCTGGAAGGCTTCA---TTAATA-TCGCTTATT---ATTTCT------------C--TTAT-----TG--GCTTCT---TT--TCTTT
gi|28 : agAGCTTCTTTTATTTGGAATTACTGTACTTTCCGTTGGCCGTGAAAATATTctt
gi|16 : AGTCTTAAAA--TGACAG-CTCATTGTCA----CACAAGAAATATATTA-----TTTTGCCAGTTATTTTTAAAACAAA--TGTATCTTAAATAGCTTTAAAAT---CTAAGTACCTCACTTAAC-AGAAAA-TAA
gi|18 : AAAA--TGACAG-CTCATTGTCA----CACAAGAAATTTATTA-----TTTTGCCGGTTATATTTAAAACAAA--TGTATCT--------TTTTAAAT---CCAAGTACCTGACTAAAC-AGACAA-T
gi|15 : cgaAATATATTG-----TTTTACTGGTTATATTTAAATTAAA--TGTATC---ACTAATTGT--AAT---CCAAGTGCCTGACTAAACAAAAAAA-CAGACCTATCCGCTATCTTATCATTCTGCTAGTCAATA---TTACTA-
gi|9 : TCATAT---AAACAAACATGTGTCATTCTTTGTTTTAAAAT---CTAAGTTCCTGAATAAAC-AAACAT-TTAACCTAGTATCTACCTTGTCATTTTACTAGAC-ATC---TTACTG-TCGTTCATT---AT---T-----------AC--TTCTGCT--AGCTGTTTCT----------TTAT-CTT----C-TTCTGTT--TCT-----A-T--TTTT---CCTGTATTTATG-----------TTAA-TA-TGA-AC---AATCCCTG--T---ATGCA--TTGT-GACAATGTTCA--TAT--CGT------ATGCATTG-TCAATGTCATTT
gi|7 : ACTTAAC-AAA--G-CAAACACATACTATAACCTATCT----GCTAATCTGTTCGTTTACCAGTCTTTTATT---CTTTCTCCTATCCATTGAC--TTTC-CAGCTGTTGTTTTTGTCTT--TCGTTTTTATT----CTTTTTATT--CAC-----A-G---------C------ATGTG-----------TT-A-TA-CAATGC----G---TTT--A---ACGGA--TGATAGATAATGTTGAT--GAAACGTGCC---ATACGTAG-CCAGTGTCAAC--ATTTGTGTTTGTAAAA----TTG-TA-AGGAAAATGCCAAATCGTA-GTT-AG-GAACTGCTGGTCAAACTC---TTGATAAA--T
gi|14 : aaacataatgaaatatcaattaatggattgaatcctcaatATA---TTACTA-TTGCTTATTATTTTTTCT-----------A---TTA-------GCTGTTTCT---TTAATCATTGT-TTT----ATGTCCGTT--TCTGTTTGA-A--CTTC---C------TTTTAATATAATTTAATTTA-TG-CAA-AT----G---CCA--ATGTAAGTA--TTGT-GACAACCTTAAC-T
gi|12 : TATTTCT---TG--TTATT-T-GTTTTAACTTTGCA-T--TAT-----ATA--TTTT---A------TT--------------TTCA-CA-TCA-AA---AG---CTT--T----TGC---TTGT----AATGTAAATATGCA-TGCTTA----TATATAAACCATTGTCAATT--ACTGT-TTTATGATA----TGA-CG-AGGGAAGAACTGAATCTAA-GTTGTGAGACCTTGTGGTTAAACAA-ATTTGCTATA--TActgacttgtcaatatta
gi|10 : tctctcactaTT----CTTTCT--T--CCT-----A-AATTCTT---C------ATCTC-----------TTTAATAGTAA-TCTG-AG---ATATAA---AT-CAAATTGT-TTTATCTACAATATGC--TGTTTACCTGTA--------ATTGTCA-TT-AAGAGTATTTGTAATACATTTTG-TGCAGGGAAAGGCCGTATCTAATGTTGGTAGAACTTGTGACCAAACTA-TTTTGTT-TA--TA-----TA----AA----T--ATTAAAAGCAATAAAATATGTTTAAACCA
gi|13 : cttTTCATT--TAT-----A-T--TCTC---C------TACCC-----------TATA-AA-TAA-ACGACAA---CTA--T---ATGAA--TTGT-GATAACATAAAT-GTT--CGCGTA---ATAAAAAG-TTACTATCAACTAAATTGT-TTTGGAAAA----CTCTTA-CGCAAAGGGTTGAAATTAA-ATTGAAGGAAaaacta
gi|11 : gtctcgttcctctaaaCT--TCT-----G-T--TTCT---C------TTTTCAATATC-----TTTA-TA-TAA-AG---AG---CT----------------GT-TATA----TGCT-TCT--CGTTTA---TTCCGTAG-CCATTGNNNNNNNNNNNNNNNNNNNNNNN----NNN-NN-NNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-----GCTGTA--TACATG-TA----TACTTAT--ATTG---GCAATAAAACATAATTCAACCA
gi|20 : TGTA--TTGT-AACATTCTTGAT-GGT--CGTTT-----TCAATAG-C-ATTGTCAATTGAATTGTGATTGATGAA----TTA-TA-CAGGAAACGTCGAATCCAA-GTTCAGAAAAagc
gi|24 : TA-TA-AGAAAAGAGTCGATTCTAA-GTTGACATAAATTGAAGCCCCGCCC-ATTTACT
gi|17 : -AAGGAACAGCCGAATCCTA-GTTGCAAGAACGTGTGTTCCAATCC-ATTTGCGGTA--TAAATG-TATACTTA----T--ATTG---GTCATAAACAACTTTTAAACCActgca
gi|23 : gCTAA---TGAGAGAACCTGTGGCCTGAGCC--TTTTCTATAACTATATGATT----TA----T--AT-----GC---AAAATATGTTTacgatgatattca
gi|26 : TGTAATCCAGTCC-ATTTGCTGGA--TGTATG-TA----TA----TTTACTG---GCCATAAAATATGTTTAtacaattattgtat
gi|27 : TGTGGCCCGACCCCATTT----------CATG--A----TA----T--ATTG---A-AATAAAATATGTTTAAACTA
gi|25 : CCAACCC-ATTTACTGTA--TACATG-CATACCTA----T--ATTG---GCAATAAAATACG-ATAAACCAaaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): GTATTCAAGTTAATATGAACATTCCTTGTGTGAATTGTGTTACAATTGTTCAAACTATAGCAGATTACATTATGTCATATCAG
Unaligned ( gi|29 ): TGGTTGGTTGGAAATAACATATGTTGTAACTAA
Alignments
lowQualScore : 1111111111111111
lowQualScore : 1 222222 1111111111111111 4444 2 222 11 111 666666666 2222 3333 5555555555555555 1 1 1 44444444444444444 11111 111 11 2222 1 33333 1 3 1111 5555555555555555 1 11 11 111 555555555555 11111 111111 1 111111 1 22222 1111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111 1 1111 2222222 1111
lowQualScore : 88 3 5 88 4 4 999999 1111111111111111 4 4 2 4 4 5555 7 0 2 77 111 3 2 33 1 777 3 1 999999999 7777 22 1 2222 22 0 11 22 22 1 1 1 22 77 0 1 7 5555555555555555 1 2 1 0 0 0 1 2 4 8 5 99 11111111111111111 4 1 1 666 6 77777 6 1 222 1 11 8 8 8 1111 0 3 3 6 00000 6 0 0 2 3 3 22 1 1 2222 3 2222222222222222 0 0 11 11 3 8 9 5 88 555 0 9999 4 1 9999 22 3 3 111 6 3 5 1 1 77 1 1 777777777777 5 1 1 0 5 5 33333 333333 0 2 0 2 4 55 777 2 2 999999 6 777 0 0 4 4 555555 777 5 2 1 0 1 99 2 0 1 4 1 2 77 1 88888 6 66 777 66 2 9999999999 666 8 4 4 666 8888 777 4 2 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 3333333333 1 1 7 3 8 2222 5 4 1 4 3 3 5 66 2222222 0000 66 888 3 0
lowQualScore : .. . . .. . . ...... ................ . . . . . .... . . . .. ... . . .. . ... . . ......... .... .. . .... .. . .. .. .. . . . .. .. . . . ................ . . . . . . . . . . . .. ................. . . . ... . ..... . . ... . .. . . . .... . . . . ..... . . . . . . .. . . .... . ................ . . .. .. . . . . .. ... . .... . . .... .. . . ... . . . . . .. . . ............ . . . . . . ..... ...... . . . . . .. ... . . ...... . ... . . . . ...... ... . . . . . .. . . . . . . .. . ..... . .. ... .. . .......... ... . . . ... .... ... . . ......................................................................................... . .......... . . . . . .... . . . . . . . .. ....... .... .. ... . .
lowQualScore : 00 0 5 00 0 0 555555 0000000000000000 0 0 5 0 0 3333 3 0 0 88 000 2 5 88 0 555 2 0 999999999 3333 00 0 7777 00 7 77 00 00 0 0 0 00 33 7 0 3 0000000000000000 0 5 0 0 0 0 0 5 0 0 0 22 88888888888888888 0 0 0 222 7 77777 7 0 777 0 00 0 0 0 2222 0 0 2 5 88888 5 0 0 0 5 5 00 0 0 2222 0 8888888888888888 0 2 00 00 8 0 6 0 88 555 6 4444 6 0 4444 00 0 7 777 7 3 7 4 0 44 0 4 000000000000 6 0 0 1 7 3 00000 000000 1 0 8 4 0 55 000 7 4 222222 3 000 5 1 0 0 777777 000 0 2 0 2 0 33 8 4 7 4 0 1 99 4 44444 0 99 888 11 4 6666666666 444 2 0 1 555 5555 000 0 9 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 0000000000 4 4 1 1 1 1111 0 4 0 0 5 6 7 11 5555555 6666 99 888 1 4
consensus : CTGANNACAATTCTGGAATNATATGNNTTGCTTCANAGCGAAGCNGCAAGAACAGTAATTGGTACCACCCGATCGATCTCCTTAGCTAATCTATGCAGGGAGTGNGGNTGNGTCTCNCNTGCAGAGATGAGAAC---GCAACACAAATT-ATGTTNATGT-ACAAAGCTACTCA--TAATATGATCCCT---TCTTATATATCA-ACCTT-A-CCCTTCTT-CCTGTAGGAGAAAAC--GTACCATATTCTTTAAGAAATAATAATGATATAAATATTCCAATCAC--GGACT--GAACTAAGCCGCAAGTCATGTATACCCTCATCTATTTCAGC-TT-G-AACTCNTTACCNAACG-AGCTCAGAGATACTGCTACAGTATCGAC--TTTTAA---------A-------TCTAGANTAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-C-C-CCTCTTA-CTATAGTGA--TGGTCACAG--ATATA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACNAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCACCT-ACGCGATGANCCTTNTTGTACCTGTT-AA-ATTCTATAGAANATAC-T-ATCA-TTA--C-TT-TTAGCTGCAATA-TTTTT--AGGAA-CCAGANAATCGTCTTATTTAACTCGACT-AGAAATTTTCACCCATTAAATNCNGAGCTTCTTTTATTTGGAAANACTGCACTTTCCGTTG---ATGAAAATATTGTTGTCTTCACAGCGGTTCACGAATACATT-----------AAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATGAC--GGCTCATTGTCAC--GC--AAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAAC-AGACA-AT-A----AACCTATCTGCTA-TCTTGTCNTTCTGCTAGTCTATATTACTGTCGCTCATTNTTTCTAC--TTAT-C-T-GTTG--TTTCT---TT--TCGTT--T---TT--CT---TTCCGTT-TCTAT--T----CTT---CT-TNT------------NT----------TT------A-TA-TAA-AC---AG---C---TGTA---TGNATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTGTA--TACATG-TA----TA----T--ATTG---GCAATAAAATATGTTTAAACCA
Reference ( family-603 ) : CTGATAACAATTCTGGAATTATATATTTTGCTTTATAGCGAAGTTGCAAGAACAGTAATTGGTACTACCCGATCG----------CT----TATGTAGGGAGTAAGGTTACGTCTCACATGCAGAGATGAGAATNCTGCAACACAAATT-ACGTTNATGT-A-AAAGCTACTCA--TAATATGNTCCCT---TCTTATATATNA-ACCT--A-CCCTTCTTACNTGNNGGNGAAAANATNTANNACATCNTNNANNANATANTANTGNNATCGACANTCCAATCACAGGGACT--AA--TNAGCCGCANGTCATGTATACCCTCATCTATTTCAGC-TT-G-ANCTCGTTACCTAACG-AGCTCAGAGACACTGCTACAGTATCGAC--TTTTAA---------A-------TCTAGAATAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-C-C-CCTCTTA-CTATAGTGA--TGGTCANAG--ATACA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACAAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCATCT-ACG-GACGAACCTTTTTGNNCNTGNT-AA-ATTCTATAGAATATAC-T-AT-A-TTA--T-TT-TTAGCTGCAATN-TTTTT--AGGAA-CCGGAGAATCGTCTTATTTAACTCGACT-AGGAGTTTTCACCCGTTNAATTCCGAGCTTCTTTTATTTGGAAATACTGCACTTTCCGTTG---ATGANAATATTGTTGTCTTCANAGCGGTTCACGAATACAT------------AAAACAACNAGTCGTTTCAAANAGTCTTAA-AATGAC--GGCTCATTGTCAC--GC--AAGAAATATATTATTTTGCCGGTTATATTTAAANCA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAAC-AGACA-AT-A----AACCTATCCGCTA-TCTTGTCNTTCTGCTAGNCTGTNTTACTGTCGTTTATTNTTTCTAC--TTAT-C-T-GTTG--TTTCT---TT--TCATT--T---TT--CT---TTCCGTT-TCTAN--T----CTT---CT-TCT------------NT----------TT------A-TA-TAA-AC---AG---C---TNNA---TGCATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGNGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCGACCC-ATTTGCTGTA--TACATG-TA----TA----T--ATTG---GCAATAAAATATGTTTAAACCA
gi|1 : CTGAATATAATTCTGAAATGAT-TGAATTACTTCAAAACGAAGCAGCAAGAATAGTAA------CCACCCAATCGATCTCCTTAGCTAATCTATACAGAGAGTGTGGATGGGTCTCTCTTGCAGAGATGAGAAA---GCAGCATAAATTGATATTTATGT-ACAAAGCTACTCA--TAACATGATCCCG---TCTTATATATCAGACTTT-ATCCCTTCTT--CTGTAGGAGAAAAC--GTACCATATTCCTTAAGAAATAATAATGATGTAAATATTCCAATTACTCGGACT--GAACTAAGCCGCAAATCATGTATACCCTCATCTATTTCAGT-TTTG-AACTCTTTACCAAACG-AGCTCAGAAATACTGCTACAGTATCGAT--TTTTAA---------A-------TCTAGATTAAAGGCCTATCTTCTAGAAGTAGTTA-ATC-C-TACCTCTTA-CTATAGTTA--TGGTCAGAG--ATATA-TAG-CTG-C----TATGCATGCAAGATTGCGA-ACCAAATGTAGCAACTTGA--ACAATGACCTTTACCTTAATCACCT-ACGCGATGACCCTCACTGTACCTGTTCAA-ATTCTATAGAAGATGCAG-ATCA-TTACCT-TT-TTAGATGCAATC-TTTTT--AGGAA-CCAGATAATCGTCTTATTTGACTCGACT-AGAAATTTTCACCCATTAAATGCAGAGCTTCTTTTATTTGGAAAGACTGCACTTTCTATTG---ATGAAAACATTGTTGTTTTCACAGCGGTTCACGAATATATT-----------AAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATAAC--AGCTCATTGTCAT--TT--AAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCTTAAATAGCT--TTTAAAT---CTAAGTACCTGACTTAAC-AGACA-AT-A----AATCTATCTTATA-TCTTATCTTTTTGCTAATCTATATTACTATCGCTCATTCTTTCTAC--TTACACAT-GTTG--TTTCT---TT--TCATTA-TA--TT--CT---TTCCACT-TCTAA--T----TTT---CT-TCT------------GT----------TT------A-TA-TAA-AC---AG---C---TAAA---TGCATTGT-GACAACCTTAAT-TGT--CGTTT--A-GTACATAGCCATTGTCAATTGAATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTATA--TACATG-TA----TA----T--ATTG---GCAATAAAATATGTTTAAACCA
gi|10 : T--T---TT--CT---TTC--TT-CCTAAATT----CTT---CA-TCT------------CT----------TT------AATAGTAA-TCTG-AG---A---TATAAATCAAATTGT-TTTATCTACAATATGC--TGTTT--A-CC-TGTA---ATTGTCA-TT-AAGAGTATTTGTAATACATTTTG-TGCAGGGAAAGGCCGTATCTAATGTTGGTAGAACTTGTGACCAAACT--ATTT--TGTT--TATAT---A----AA----T--ATTAAAAGCAATAAAATATGTTTAAACCA
gi|11 : c---TTCTGTT-TCT-C--T----TTT---CAATAT------------CT----------TT------A-TA-TAA-AG---AG---C---TGT----TATAT-------------GCT-TCT--CGTTT--A-TTCCGTAGCCATTGNNNNNN-NNNNNNNNNNNNNNNN----NNN-NN-NNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-N---GCTGTA--TACATG-TA----TACTTAT--ATTG---GCAATAAAACATAATTCAACCAaaacta
gi|12 : cTA--TTTCT---TG--TTATT--TGTTTTAACT---TTGCATTATATAT--T-----------T-TAT------------TT----------TC------A-CA-TCA-AA---AG---C---TTT----TGC-TTGT----AATGTAAATATGCA-TGCTT--ATATATA-AACCATTGTCAATT-A-CTGT-TTTATGATA----TGA-CG-AGGGAAGAACTGAATCTAA-GTTGTGAGACCTTGTGGTTAAACAA-ATTTGCTATA--TAagc
gi|13 : tctctcacta---TC--TCGTT--C---CT--CTAAATTC-ATT-TATAT--T----CTC---CT-ACC------------CT----------AT------A-AA-TAA-ACGACAA---C---TATA---TGAATTGT-GATAACATAAAT-GTT--CGCGT--A-ATAAAAAGTTACTATCAACTAAATTGT-TTTGGAAAA----CTCTTA-CGCAAAGGGTTGAAATTAA-ATTGAAGGAA
gi|14 : gTATTACTATTGCTTATTATTTTTTC--T-AT-T-A-GCTG--TTTCT---TTAATCATTGTT---TT--AT---GTCCGTT-TCTGT--TTGAACTT---CC-TTTTAATATAATTTAAT----------TT------A-TG-CAA-AT----G---CCAATGTA---AGTATTGT-GACAAC
gi|15 : aAATATATTGTTTTACTGGTTATATTTAAATTA-AA--TG---TATC---ACTAATT--GT--AAT---CCAAGTGCCTGACTAAACAAAAAA-AC-A----GACCTATCCGCTA-TCTTATCATTCTGCTAGTCAATATTACTcttaactctgacttgtcaatatta
gi|16 : AGTCTTAA-AATGAC--AGCTCATTGTCAC--AC--AAGAAATATATTATTTTGCCAGTTATTTTTAAAACA-AA--TG---TATCTTAAATAGCT--TTAAAAT---CTAAGTACCTCACTTAAC-AGAAA-AT-A----Aa
gi|17 : -AAGGAACAGCCGAATCCTA-GTTGCAAGAACGTGTGTTCCAATCC-ATTTGCGGTA--TAAATG-TATACTTA----T--ATTG---GTCATAAACAACTTTTAAACCA
gi|18 : gAA-AATGAC--AGCTCATTGTCAC--AC--AAGAAATTTATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATC--------TT--TTTAAAT---CCAAGTACCTGACTAAAC-AGACA-AT-acgatgatattca
gi|19 : cgaACG-AGCTCAGAGATACTGCTACAGTATCGAC--TTTTAA---------G-------TCTAGATTAAAGGCCTATCTTCCAGAAGTAG-TA-ATC-CGC-CCTCTTA-ATATAGTGA--TGGTC
gi|2 : GACT--GAACTTAGCCGCAAATCATGTATACCCTCATCTATTTCAGC-TT-GGAACTCTTTACCAAACG-AGCTCATAGATATTGCTACAGTATCGAC--TTCTAA---------ATTCTAAATCTAGAATAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-CAC-CTTCTTA-CTATAATGA--TGGTCACAGATATATA-TAT-CTG-C----TATGCAAGCACGACTGCGA-ACCAAATGTAGCAACTTGA--------ACCTTAACCTTAATCATCT-ACGCGATGAACCTTGTT
gi|2 : TTTT--AGGAA-CCAGAGAATCGTTTTATTTGACTCTACT-AGAAATGTTCATCCGTTAAATGCAGAGCTTCTTTTATTTGCAAAGACTGTACTTTCCGTTG---ATGACAA-ATTGTTGTTTTCACAGCGGTTT-------------------------ACAACAAGTCGTTTCAAAGAGTCCT-A-AATGAC--AGCTCATTGTCAC--AC--AAGAAATTTA-TATTTTGCCGGTTATATTTAAAACA-AA--TG---TATTTTAAATAGTT--TTTAAAT---CCAATTTCTTGACTAAAC-AGACA-AT-T----AATCTATCTTATA-TCTTATCTTTCTGCTttaggaaccagagaatcgttttatttgactctactagaaatgttcatccgttaaatgcagagcttcttttatttgcaaagactgtactttccgttgatgacaaattgttgttttcacagcggtttacaacaagtcgtttcaaagagtcctaaatgacagctcattgtcacacaagaaatttatattttgccggttatatttaaaacaaatgtattttaaatagtttttaaatccaatttcttgactaaacagacaattaatctatcttatatcttatctttctgct
gi|20 : gactgaacttagccgcaaatcatgtataccctcatctatttcagcttggaactctttaccaaacgagctcatagatattgctacagtatcgacttctaaattctaaatctagaataaaggcctatcttccagaagtagttaatccaccttcttactataatgatggtcacagatatatatatctgctatgcaagcacgactgcgaaccaaatgtagcaacttgaaccttaaccttaatcatctacgcgatgaaccttg---TGTATTGT-AACATTCTTGAT-GGT--CGTTTTCA-ATA----GC-ATTGTCAATTGAATTGTGATTGATGAA----TTA-TA-CAGGAAACGTCGAATCCAA-GTTCAGAAAA
gi|21 : GAGAAC---GCAACACAAATTTATGTTAATGT-ACAAAGC-A-TCAAATAATATGGTCCCT---TCCTATA-ATAA-GC
gi|23 : aaagactgCTAA---TGAGAGAACCTGTGGCCTGAGCC--TTTTCTATAACTATATGATT----TA----T--AT-----GC---AAAATATGTTTgacttgattccttc
gi|24 : TA-TA-AGAAAAGAGTCGATTCTAA-GTTGACATAAATTGAAGCCCCGCCC-ATTTACTtacaattattgtat
gi|25 : CCAACCC-ATTTACTGTA--TACATG-CATACCTA----T--ATTG---GCAATAAAATACG-ATAAACCActgca
gi|26 : TGTAATCCAGTCC-ATTTGCTGGA--TGTATG-TA----TA----TTTACTG---GCCATAAAATATGTTTAac
gi|27 : TGTGGCCCGACCCCATTT----------CATG--A----TA----T--ATTG---A-AATAAAATATGTTTAAACTA
gi|28 : AGCTTCTTTTATTTGGAATTACTGTACTTTCCGTTGGCCGTGAAAATATTaaa
gi|3 : --TTTAAA---------A-------TCTAGTATAAAGAC-TATCTTTCAGAAGTAAT-A-A-------CCTTTCA-TTTTATTGAGTTGGTCTAAG--ATATAATATATTGTC----TATGCATGCAATATTGTGA-AAAAAA-GTAGTAA-------A--ATGAC-TTTACCATAATCATCTTACA-GATGAACCTTTTTGACCCTGAT-TATATTATATAGACTATA-----T-A-TTT--C-TT-TTAGCTGAAATACTTTTT--AGGGA-CTAGATAACCGTCTTATCTAACTCGACTGAGGAGTTT-----CATTTAATTCTGAGTTTCTTTTATTTTGAAATACTGCACTTTCTGTTG---ATTACAATATAGTTGTCTTCAAAGCGGTTCTTGAAAACATA-----------AAAACAAGCAGTGGTTTCAAATAGTTTTGA-AAT--T--G--TCATTG--AA--AC--AAACTACACAT--TTTTGCCGCTTAT------------A--TG---TATCATAACTA--------AA------CA-------GACTATAT-AGACA-TT-A----AGCCTAACTG------TTGTCATTCTACAAGTCTGTCTTACTGAAG--TAAGTTTTCAAC--TT-----TAGATG--TTTCT---TC--TTCTT--T---TT--CC---ATTCGTC-T-TGT--T----CTT---CT-
gi|4 : AAATG-ACATTGATGT-A-AAAGCTGCTCA--TAATATGACCCCTACATATTATATACCACACCTTAA-CCCTTCT--CCTGAAGACGAAAACATGTACAATATTCTTTACGAAATAATACTGCTATAAACAGTCCA-TCACAGGGACTTAAG--TGAAC-GCAGGTCATGCATACCCTTAACAATTCCAGC-TT-G-AGCTCGTTACCTAATGCAG-TCAGAAACATAGTTACAGTATCGACTTTTTTAG---------A-------TCTAGCATAAAGGCTTATCTTCCAGAAGAAGCAA-GTCTC-C-CTTCTTC-TTATATTG---TTGCCACAG--ATGCG-TAT-CGG-CCTTGTATGTATGTAAGCTTACGACACAAAATGTAGCAATTTGAGCA--ATGACTTTTATCTCAATCACCT-GAGAAACGATCCCTTTTGTACATGCT-GA-AATCCGTAGTATAAACTT-ATCA-TTA--C-TTGTTAGTTGCAATA-ATTTT--AGG-A-CC-------CGTTTTATATAACTCGACT-AG
gi|5 : CTGATAACAATTCTGGAATTATATATTTTGCTTTATAGCGAAGTTGCAAGAACAGTAATTGGTACTACCCGATCG----------CT----TATGTAGGGAGTAAGGTTACGTCTCACATGCAGAGATGAGAATACTGC-ACACAAACT-ATGT--ATGTAA-AAAGTTACTCA--TGATATGTTTTAT---TCTTATATGTTA------------TTCTTATATGTTAGAGAAAAA--TTAACACATCATGGAATACATACTAATAAAATCGATATTCCAAT----------------TAAGCCGCTTGGCTTGTATAGGATCATCTATTTTCGCTTT-G-ATGTAGTTGCCTGATG-GGATCAGAGACACTGTTTAAGTATCGAC--TTTTAAAACGGAAATA-------TCTAGATTTAAGGCCTATCTGC---AAGCA-TTATATC-C-C-CAATTTGTCTAAAGCGT--TGGTCACAG--ATACA-TAT-CTG-
gi|6 : aTGTT-AA-ATTCTATAGAAGATAC-TGAT-AGTTA--AATT-TTAACTGCAATA-TTTTTCTAGGAAACCGGAGAATCGTCTTTCTCAACTCGAC------------------TAAA----GAGTTTCACCCATT---AAATTCTGAACTTCT-----------------TTGTCGTCTGCAAAGCGGTTCACGAATACATTGTCAAGTATATAAAACAATCAGTCGCTACAAACAGTCTTAACAGTTATTGGATTGATTGTCACTGGTCTACGTAACAC-TT-TTTTGCCGATTATATTTAAGTTA-TA--TG---CATTATACAT-------TGAAAT---ATGTGTACCTGAATAAAC-AAACA-GTTA----AACCTATCTGCTG-TCTTTTCTTCCTGCTAGACTGTCTAACTGTTGTTCATTCTTTCTCCAGTTAT-C-T-GTT---TTTCT---CT--TCAT------------T---TTCCAT----TAA--T----CTTGTCCT-TCT------------TT----------
gi|7 : ttAAACATAA--TGAAATATC--AATTAATGGATTGAATC---CTCAATACTTAACAAAGC-AAACACAT-ACTATAACCTATCTGCTAATCTGTTCGTT-TACCAGTCT------------TTTATTCTTTCT-C--CTAT-C-C-ATTGACTTTCCAGCTG--TTGTT--T---TTGTCT---TTC-GTT-TTTAT--T----CTT---TT-TAT------------TCACAGCATGTGTT------A-TA-CAATGC----G---T---TTAA---CGGATGATAGATAATGTTGAT--GAAACGTGC--C-ATACGTAGCCAGTGTCAAC--ATTTGTGTTTGTAAAA----TTG-TA-AGGAAAATGCCAAATCGTA-GTT-AG-GAACTGCTGGTCAAACTC-a
gi|8 : TTTCACCCATCCATTTCCGAGCTTCCTATATTTAAAAAGATTTCACTTTCCAGTG---AT-AAAATTTCGTTGTATTCACAGCTGTTCATGAGTATAT------------AA--TAACAAGGCGTTTATAAGAGTCTTAA-AATAGC--TG-TCAGTGTCAA--GC--AAGAAATATCTTATTTTTCCGGTCATATCTCAGTTA-AA--TG---TATTATAAGTTGTT--TCGAAATAAAAAAAATAAC-GTCTAAAC-AAACA-AT------------TCTGCTA-TCATGCCTTTCTGGAAGGCTTCATTAATATCGCTTATTATTTCT-C--TTAT---T-G--G--CTTCT---TT--TC-----T---TT--CT---Tttgataaat
gi|9 : agTCATAT---AAACA-AACATG---TGTCATTCTTTGTT--TTAAAAT---CTAAGTTCCTGAATAAAC-AAACA-TT-T----AACCTAGTATCTA-CCTTGTCATTTTACTAGAC-ATCTTACTGTCGTTCATTAT---TAC--TTCTGC-TAGCTG--TTTCT---TT----ATC--T---T----C---TTCTGTT-TCTAT--T----TTT---CC-TGT------------AT----------TTATGTTAA-TA-TGA-AC---AATCCC---TGTA---TGCATTGT-GACAATGT-------T--CAT------AT-CGTATGCATTGTCAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTATTCAAGTTAATATGAACATTCCTTGTGTGAATTGTGTTACAATTGTTCAAACTATAGCAGATTACATTATGTCATATCAG
Unaligned ( gi|29 ): TGGTTGGTTGGAAATAACATATGTTGTAACTAA
Alignments
lowQualScore : 1 222222 4444444444444444 2222 1 2 11 111 55555555 3333 11 44444 1 2 3333333 222222222 11111 111 11 2222 1 33333 1 1 1 2222 22 1 1 11 111 55555555555555 11111 111111 1 111111 1 22222 222222222222222222222222 44444444444444444444444444444444 2222222222222222222 3333333333333333333 1111111111 1 1111 2222222222222
lowQualScore : 22 1 5 22 1 1 999999 5555555555555555 1 1 1 1 1 7777 2 0 77 8 3 2 33 1 777 99999999 1111 88 7 66666 2 2 1 2 1 0 0 1 1 1 8 5 0000000 666666666 1 1 1 666 6 77777 6 1 222 11 8 8 8 1111 0 1 3 6 00000 6 0 8 1 1 0 0 1 9999 99 3 33 0 0 0 11 3 8 3 3 88 0 0 0 9999 1 44 3 22 1 3 111 6 3 5 1 77 1 1 00000000000000 0 0 5 5 33333 333333 0 2 0 1 4 55 777 2 2 999999 6 777 0 0 555 555555 5 55 5 2 1 0 1 55 3 0 1 4 0 6 2 77 1 88888 6 66 111111111111111111111111 666 8 99 55 55 8888 1 22222222222222222222222222222222 5 5 5 7777777777777777777 1 1111111111111111111 3 3333333333 1 1 7 3 8 2222 5 4 2 4 3 5 66 5555555555555 888 3 0
lowQualScore : .. . . .. . . ...... ................ . . . . . .... . . .. . . . .. . ... ........ .... .. . ..... . . . . . . . . . . . . ....... ......... . . . ... . ..... . . ... .. . . . .... . . . . ..... . . . . . . . . .... .. . .. . . . .. . . . . .. . . . .... . .. . .. . . ... . . . . .. . . .............. . . . . ..... ...... . . . . . .. ... . . ...... . ... . . ... ...... . .. . . . . . .. . . . . . . . .. . ..... . .. ........................ ... . .. .. .. .... . ................................ . . . ................... . ................... . .......... . . . . . .... . . . . . . .. ............. ... . .
lowQualScore : 00 0 5 00 0 0 555555 5555555555555555 0 0 0 0 0 0000 3 0 88 8 2 5 88 2 555 77777777 0000 33 3 00000 5 5 2 5 2 0 0 2 0 0 0 0 8888888 777777777 0 0 0 222 7 77777 7 0 777 00 0 0 0 2222 0 0 2 5 88888 5 0 8 0 0 0 0 0 5555 55 2 88 0 2 0 00 8 0 8 8 88 8 8 6 4444 0 66 8 00 0 7 777 7 0 7 4 44 0 4 00000000000000 6 1 7 3 00000 000000 1 0 8 2 0 55 000 7 4 222222 3 000 5 1 777 777777 0 00 0 2 0 2 9 88 0 4 7 0 4 6 1 99 4 44444 0 99 222222222222222222222222 444 2 55 66 55 5555 0 99999999999999999999999999999999 0 0 0 3333333333333333333 0 3333333333333333333 1 0000000000 4 4 1 1 1 1111 0 4 1 0 6 7 11 2222222222222 888 1 4
consensus : CTGANNACAATTCTGGAATNATATGNNTTGCTTCANAGCGAAGCNGCAAGAACAGTAATTGGTACCACCCGATCGATCTCCTTAGCTAATCTATGCAGGGAGTGNGGNTGNGTCTCNCNTGCAGAGATGAGAAC---GCAGCACAAATT-ATGTTNATGTACAAAGCTACTC--ATAATATGATCCCT---TCTTATATATCA-ACCTTA-CCCTTCTTCC-TGTAGGAGAAAAC--GTACCATATTCTTTAAGAAATAATAATGATATAAATATTCCAATCAC--GGACTGAACTAAGCCGCAAGTCATGTATACCCTCATCTATTTCAGC-TT-GAACTCNTTACCNAACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------ATCTAGANTAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-C-C-CCTCTTA-CTATAGTGA--TGGTCACAG--ATATA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACNAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCACCT-ACGCGATGANCCTTNTTGTACCTG-TT-AAATTCTATAGAANATAC-T-ATCGTTAC--TT-TTAGCTGCAATA-TTTTT--AGGAA-CCAGANAATCGTCTTATTTAACTCGACT-AGAAATTTTCACCCATTAAATNCNGAGCTTCTTTTATTTGGAAANACTGCACTTTCCGTTG---ATGAAAATATTGTTGTCTTCACAGCGGTTCACGAATACATT-----------AAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATGAC--GGCTCATTGTCAC--GC--AAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAACAGACA-A-T-A----AACCTA-TCTGCTA-TCTTGTCNTTCTGCTAGTCTATATTACTGTCGCTCATTNTTTCTAC--TTAT-C-T-GTTG--TTTCT---T----T--TCGTT--T-TT--CT---TTCCGTT--TC-TA--TT----CTTCTTNTC------------T----------TT------A-TA-TAA-AC---AG---C---TGTA---TGNATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTGTA--TACATG-TA----TA----TATTG---GCAATAAAATATGTTTAAACCA
Reference ( family-603 ) : CTGANNACAATTCTGGAATNATATGNNTTGCTTCANAGCGAAGCNGCAAGAACAGTAATTGGTACCACCCGATCGATCTCCTTAGCTAATCTATGCAGGGAGTGNGGNTGNGTCTCNCNTGCAGAGATGAGAAC---GCAACACAAATT-ATGTTNATGTACAAAGCTACTC--ATAATATGATCCCT---TCTTATATATCA-ACCTTA-CCCTTCTTCC-TGTAGGAGAAAAC--GTACCATATTCTTTAAGAAATAATAATGATATAAATATTCCAATCAC--GGACTGAACTAAGCCGCAAGTCATGTATACCCTCATCTATTTCAGC-TT-GAACTCNTTACCNAACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------ATCTAGANTAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-C-C-CCTCTTA-CTATAGTGA--TGGTCACAG--ATATA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACNAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCACCT-ACGCGATGANCCTTNTTGTACCTG-TT-AAATTCTATAGAANATAC-T-ATCATTAC--TT-TTAGCTGCAATA-TTTTT--AGGAA-CCAGANAATCGTCTTATTTAACTCGACT-AGAAATTTTCACCCATTAAATNCNGAGCTTCTTTTATTTGGAAANACTGCACTTTCCGTTG---ATGAAAATATTGTTGTCTTCACAGCGGTTCACGAATACATT-----------AAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATGAC--GGCTCATTGTCAC--GC--AAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAACAGACA-A-T-A----AACCTA-TCTGCTA-TCTTGTCNTTCTGCTAGTCTATATTACTGTCGCTCATTNTTTCTAC--TTAT-C-T-GTTG--TTTCT---T----T--TCGTT--T-TT--CT---TTCCGTT--TC-TA--TT----CTTCTTNTN------------T----------TT------A-TA-TAA-AC---AG---C---TGTA---TGNATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTGTA--TACATG-TA----TA----TATTG---GCAATAAAATATGTTTAAACCA
gi|1 : CTGAATATAATTCTGAAATGAT-TGAATTACTTCAAAACGAAGCAGCAAGAATAGTAA------CCACCCAATCGATCTCCTTAGCTAATCTATACAGAGAGTGTGGATGGGTCTCTCTTGCAGAGATGAGAAA---GCAGCATAAATTGATATTTATGTACAAAGCTACTC--ATAACATGATCCCG---TCTTATATATCAGACTTTATCCCTTCTTC--TGTAGGAGAAAAC--GTACCATATTCCTTAAGAAATAATAATGATGTAAATATTCCAATTACTCGGACTGAACTAAGCCGCAAATCATGTATACCCTCATCTATTTCAGT-TTTGAACTCTTTACCAAACG-AGCTCAGAAATACTGCTACAGTATCGAT-------TTTTAA---------ATCTAGATTAAAGGCCTATCTTCTAGAAGTAGTTA-ATC-C-TACCTCTTA-CTATAGTTA--TGGTCAGAG--ATATA-TAG-CTG-C----TATGCATGCAAGATTGCGA-ACCAAATGTAGCAACTTGA--ACAATGACCTTTACCTTAATCACCT-ACGCGATGACCCTCACTGTACCTG-TTCAAATTCTATAGAAGATGCAG-ATCATTACCTTT-TTAGATGCAATC-TTTTT--AGGAA-CCAGATAATCGTCTTATTTGACTCGACT-AGAAATTTTCACCCATTAAATGCAGAGCTTCTTTTATTTGGAAAGACTGCACTTTCTATTG---ATGAAAACATTGTTGTTTTCACAGCGGTTCACGAATATATT-----------AAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATAAC--AGCTCATTGTCAT--TT--AAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCTTAAATAGCT--TTTAAAT---CTAAGTACCTGACTTAACAGACA-A-T-A----AATCTA-TCTTATA-TCTTATCTTTTTGCTAATCTATATTACTATCGCTCATTCTTTCTAC--TTACACAT-GTTG--TTTCT---T----T--TCATTA-TATT--CT---TTCCACT--TC-TA--AT----TTTCTTCTG------------T----------TT------A-TA-TAA-AC---AG---C---TAAA---TGCATTGT-GACAACCTTAAT-TGT--CGTTT--A-GTACATAGCCATTGTCAATTGAATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTATA--TACATG-TA----TA----TATTG---GCAATAAAATATGTTTAAACCA
gi|10 : T--T-TT--CT---TTC--TT--CC-TAAATT----CTTCATCTC------------T----------TT------AATAGTAA-TCTG-AG---A---TATAAATCAAATTGT-TTTATCTACAATATGC--TGTTT--A-CC-TGTA---ATTGTCA-TT-AAGAGTATTTGTAATACATTTTG-TGCAGGGAAAGGCCGTATCTAATGTTGGTAGAACTTGTGACCAAACT--ATTT--TGTT--TATAT---A----AA----TATTAAAAGCAATAAAATATGTTTAAACCA
gi|11 : c---TTCTGTT--TC-TC--TT----TTCAATATC------------T----------TT------A-TA-TAA-AG---AG---C---TGT----TATAT-------------GCT-TCT--CGTTT--A-TTCCGTAGCCATTGNNNNNN-NNNNNNNNNNNNNNNN----NNN-NN-NNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-N---GCTGTA--TACATG-TA----TACTTATATTG---GCAATAAAACATAATTCAACCAaaacta
gi|12 : cTA--TTTCT---TGTTAT--TTGTT--T-TAA-CT---TTGCATTA-TA-TA--TT--------TTATT------------T----------TC------A-CA-TCA-AA---AG---C---TTT----TGC-TTGT----AATGTAAATATGCA-TGCTT--ATATATA-AACCATTGTCAATT-A-CTGT-TTTATGATA----TGA-CG-AGGGAAGAACTGAATCTAA-GTTGTGAGACCTTGTGGTTAAACAA-ATTTGCTATA--TAagc
gi|13 : tctctcacta---T----C--TCGTT--C-CT--CTAAATTC-ATT--TA-TA--TT----CTCCTACCC------------T----------AT------A-AA-TAA-ACGACAA---C---TATA---TGAATTGT-GATAACATAAAT-GTT--CGCGT--A-ATAAAAAGTTACTATCAACTAAATTGT-TTTGGAAAA----CTCTTA-CGCAAAGGGTTGAAATTAA-ATTGAAGGAA
gi|14 : gATATTACTATTGCTTATTATTTTTTC--T-AT-T-A-GCTG--TTTCT---T----TAATCATTGTT-TT--AT---GTCCGTT--TC-TG--TTTGAACTTCCTTTTAATATAATTTAAT----------TT------A-TG-CAA-AT----G---CCAATGTA---AGTATTGT-GACAAC
gi|15 : AATATATTGTTTTACTGGTTATATTTAAATTA-AA--TG---TATC---ACTAATT--GT--AAT---CCAAGTGCCTGACTAAACAAAAA-AAC-A----GACCTA-TCCGCTA-TCTTATCATTCTGCTAGTCAATATTACTcttaactctgacttgtcaatatta
gi|16 : AGTCTTAA-AATGAC--AGCTCATTGTCAC--AC--AAGAAATATATTATTTTGCCAGTTATTTTTAAAACA-AA--TG---TATCTTAAATAGCT--TTAAAAT---CTAAGTACCTCACTTAACAGAAA-A-T-A----Aa
gi|17 : -AAGGAACAGCCGAATCCTA-GTTGCAAGAACGTGTGTTCCAATCC-ATTTGCGGTA--TAAATG-TATACTTA----TATTG---GTCATAAACAACTTTTAAACCA
gi|18 : gAA-AATGAC--AGCTCATTGTCAC--AC--AAGAAATTTATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATC--------TT--TTTAAAT---CCAAGTACCTGACTAAACAGACA-A-T-acgatgatattca
gi|19 : cgaACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------GTCTAGATTAAAGGCCTATCTTCCAGAAGTAG-TA-ATC-CGC-CCTCTTA-ATATAGTGA--TGGTC
gi|2 : GACTGAACTTAGCCGCAAATCATGTATACCCTCATCTATTTCAGC-TTGGAACTCTTTACCAAACG-AGCTCATAGATATTGCTACAGTATCGACTTCTAAATTCTAA---------ATCTAGAATAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-CAC-CTTCTTA-CTATAATGA--TGGTCACAGATATATA-TAT-CTG-C----TATGCAAGCACGACTGCGA-ACCAAATGTAGCAACTTGA--------ACCTTAACCTTAATCATCT-ACGCGATGAACCTTGTTTTA
gi|2 : TTTT--AGGAA-CCAGAGAATCGTTTTATTTGACTCTACT-AGAAATGTTCATCCGTTAAATGCAGAGCTTCTTTTATTTGCAAAGACTGTACTTTCCGTTG---ATGACAA-ATTGTTGTTTTCACAGCGGTTT-------------------------ACAACAAGTCGTTTCAAAGAGTCCT-A-AATGAC--AGCTCATTGTCAC--AC--AAGAAATTTA-TATTTTGCCGGTTATATTTAAAACA-AA--TG---TATTTTAAATAGTT--TTTAAAT---CCAATTTCTTGACTAAACAGACA-A-T-T----AATCTA-TCTTATA-TCTTATCTTTCTGCTggaaccagagaatcgttttatttgactctactagaaatgttcatccgttaaatgcagagcttcttttatttgcaaagactgtactttccgttgatgacaaattgttgttttcacagcggtttacaacaagtcgtttcaaagagtcctaaatgacagctcattgtcacacaagaaatttatattttgccggttatatttaaaacaaatgtattttaaatagtttttaaatccaatttcttgactaaacagacaattaatctatcttatatcttatctttctgct
gi|20 : gactgaacttagccgcaaatcatgtataccctcatctatttcagcttggaactctttaccaaacgagctcatagatattgctacagtatcgacttctaaattctaaatctagaataaaggcctatcttccagaagtagttaatccaccttcttactataatgatggtcacagatatatatatctgctatgcaagcacgactgcgaaccaaatgtagcaacttgaaccttaaccttaatcatctacgcgatgaaccttg---TGTATTGT-AACATTCTTGAT-GGT--CGTTTTCA-ATA----GC-ATTGTCAATTGAATTGTGATTGATGAA----TTA-TA-CAGGAAACGTCGAATCCAA-GTTCAGAAAA
gi|21 : GAGAAC---GCAACACAAATTTATGTTAATGTACAAAGC-A-TCAAATAATATGGTCCCT---TCCTATA
gi|23 : aaagactgCTAA---TGAGAGAACCTGTGGCCTGAGCC--TTTTCTATAACTATATGATT----TA----TAT-----GC---AAAATATGTTTataagcgacttgattccttc
gi|24 : TA-TA-AGAAAAGAGTCGATTCTAA-GTTGACATAAATTGAAGCCCCGCCC-ATTTACTtacaattattgtat
gi|25 : CCAACCC-ATTTACTGTA--TACATG-CATACCTA----TATTG---GCAATAAAATACG-ATAAACCActgca
gi|26 : TGTAATCCAGTCC-ATTTGCTGGA--TGTATG-TA----TATT--TACTG---GCCATAAAATATGTTTAac
gi|27 : TGTGGCCCGACCCCATTT----------CATG--A----TA----TATTG---A-AATAAAATATGTTTAAACTA
gi|28 : AGCTTCTTTTATTTGGAATTACTGTACTTTCCGTTGGCCGTGAAAATATTaaa
gi|3 : -------TTTAAA---------ATCTAGTATAAAGAC-TATCTTTCAGAAGTAAT-A-A-------CCTTTCA-TTTTATTGAGTTGGTCTAAG--ATATAATATATTGTC----TATGCATGCAATATTGTGA-AAAAAA-GTAGTAA-------A--ATGAC-TTTACCATAATCATCTTACA-GATGAACCTTTTTGACCCTGATT-ATATTATATAGACTATA--T-AT--TT-C--TT-TTAGCTGAAATACTTTTT--AGGGA-CTAGATAACCGTCTTATCTAACTCGACTGAGGAGTTT-----CATTTAATTCTGAGTTTCTTTTATTTTGAAATACTGCACTTTCTGTTG---ATTACAATATAGTTGTCTTCAAAGCGGTTCTTGAAAACATA-----------AAAACAAGCAGTGGTTTCAAATAGTTTTGA-AAT--T--G--TCATTG--AA--AC--AAACTACACAT--TTTTGCCGCTTAT------------A--TG---TATCATAACTA--------AA------CA-------GACTATATAGACA-T-T-A----AGCCTA-ACTG------TTGTCATTCTACAAGTCTGTCTTACTGAAG-TAAGT-TTTCAAC--TT-----TAGATG--TTTCT---T----C--TTCTT--T-TT--CC---ATTCGTC--T--TG--TT----CTTCT
gi|4 : AAATG-ACATTGATGTA-AAAGCTGCTC--ATAATATGACCCCTACATATTATATACCACACCTTAACCCTTCT-CC-TGAAGACGAAAACATGTACAATATTCTTTACGAAATAATACTGCTATAAACAGTCCA-TCACAGGGACTTAAGTGAAC-GCAGGTCATGCATACCCTTAACAATTCCAGC-TT-GAGCTCGTTACCTAATGCAG-TCAGAAACATAGTTACAGTATCGACTT-----TTTTAG---------ATCTAGCATAAAGGCTTATCTTCCAGAAGAAGCAA-GTCTC-C-CTTCTTC-TTATATTG---TTGCCACAG--ATGCG-TAT-CGG-CCTTGTATGTATGTAAGCTTACGACACAAAATGTAGCAATTTGAGCA--ATGACTTTTATCTCAATCACCT-GAGAAACGATCCCTTTTGTACATG-CT-GAAATCCGTAGTATAAACTT-ATCATTAC--TTGTTAGTTGCAATA-ATTTT--AGG-A-CC-------CGTTTTATATAACTCGACT-AG
gi|5 : CTGATAACAATTCTGGAATTATATATTTTGCTTTATAGCGAAGTTGCAAGAACAGTAATTGGTACTACCCGATCG----------CT----TATGTAGGGAGTAAGGTTACGTCTCACATGCAGAGATGAGAATACTGCA-CACAAACT-ATGT--ATGTAAAAAGTTACTC--ATGATATGTTTTAT---TCTTATATGTTA-----------TTCTTATATGTTAGAGAAAAA--TTAACACATCATGGAATACATACTAATAAAATCGATATTCCAAT--------------TAAGCCGCTTGGCTTGTATAGGATCATCTATTTTCGCTTT-GATGTAGTTGCCTGATG-GGATCAGAGACACTGTTTAAGTATCGAC-------TTTTAAAACGGAAATATCTAGATTTAAGGCCTATCTGC---AAGCA-TTATATC-C-C-CAATTTGTCTAAAGCGT--TGGTCACAG--ATACA-TAT-CTG-
gi|6 : aTG-TT-AAATTCTATAGAAGATAC-TGATAGTTAAA-TT-TTAACTGCAATA-TTTTTCTAGGAAACCGGAGAATCGTCTTTCTCAACTCGAC------------------TAAA----GAGTTTCACCCATT---AAATTCTGAACTTCT-----------------TTGTCGTCTGCAAAGCGGTTCACGAATACATTGTCAAGTATATAAAACAATCAGTCGCTACAAACAGTCTTAACAGTTATTGGATTGATTGTCACTGGTCTACGTAACAC-TT-TTTTGCCGATTATATTTAAGTTA-TA--TG---CATTATACAT-------TGAAAT---ATGTGTACCTGAATAAACAAACA-G-TTA----AACCTA-TCTGCTG-TCTTTTCTTCCTGCTAGACTGTCTAACTGTTGTTCATTCTTTCTCCAGTTAT-C-T-GTT---TTTCT---C----T--TCAT----------T---TTCCATTAATCTTG--TC----CTTCTT
gi|7 : ttAAACATAA--TGAAATATC--AATTAATGGATTGAATC---CTCAATACTTAACAAAGCAAACACA-T-ACTATAACCTA-TCTGCTAATCTGTTCGTT-TACCAGTCT------------TTTATTCTTTCT-C--CTAT-C-C-ATTGACTTTCCAGCT----G--TTGTT--T-TTGTCT---TTC-GTT--TT-TA--TT----CTTTTTATT------------CACAGCATGTGTT------A-TA-CAATGC----G---T---TTAA---CGGATGATAGATAATGTTGAT--GAAACGTGC--C-ATACGTAGCCAGTGTCAAC--ATTTGTGTTTGTAAAA----TTG-TA-AGGAAAATGCCAAATCGTA-GTT-AG-GAACTGCTGGTCAAACTC-ta
gi|8 : TTTCACCCATCCATTTCCGAGCTTCCTATATTTAAAAAGATTTCACTTTCCAGTG---AT-AAAATTTCGTTGTATTCACAGCTGTTCATGAGTATAT--------------AATAACAAGGCGTTTATAAGAGTCTTAA-AATAGC--TG-TCAGTGTCAA--GC--AAGAAATATCTTATTTTTCCGGTCATATCTCAGTTA-AA--TG---TATTATAAGTTGTT--TCGAAATAAAAAAAATAAC-GTCTAAACAAACA-A-T-------------TCTGCTA-TCATGCCTTTCTGGAAGGCTTCATTAATATCGCTTATTATTTCT-C--TTAT---T-G--G--CTTCT---T----T--TC-----T-TT--CT---Tttgataaat
gi|9 : agTCATAT---AAACA-AACATG---TGTCATTCTTTGTT--TTAAAAT---CTAAGTTCCTGAATAAACAAACA-T-T-T----AACCTAGTAT-CTA-CCTTGTCATTTTACTAGAC-ATCTTACTGTCGTTCATTAT---TAC--TTCTGC-TAGCTG--TTTCT---T----TA-TC-------TT--C----TTCTGTT--TC-TA--TT----TTTCCTGTA------------T----------TTATGTTAA-TA-TGA-AC---AATCCC---TGTA---TGCATTGT-GACAATGT-------T--CAT------AT-CGTATGCATTGTCAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTATTCAAGTTAATATGAACATTCCTTGTGTGAATTGTGTTACAATTGTTCAAACTATAGCAGATTACATTATGTCATATCAG
Unaligned ( gi|29 ): TGGTTGGTTGGAAATAACATATGTTGTAACTAA
Alignments
lowQualScore : 1 222222 4444444444444444 2222 1 2 11 111 55555555 3333 11 44444 1 2 3333333 222222222 11111 111 11 2222 1 33333 1 1 1 22222222222222 1 1 11 111 2222222222222 11111 11111 111111111111 111111111 1 22222 2222222222222222222222222 44444444444444444444444444444444 2222222222222222222 3333333333333333333 1111111111 1 1111 2222222222222
lowQualScore : 22 1 5 22 1 1 999999 5555555555555555 1 1 1 1 1 7777 2 0 77 8 3 2 33 1 777 99999999 1111 88 7 66666 2 2 1 2 1 0 0 1 1 1 8 5 0000000 666666666 1 1 1 666 6 77777 6 1 222 11 8 8 8 1111 0 1 3 6 00000 6 0 8 1 1 0 0 1 99999999999999 0 0 0 11 3 8 3 3 8 0 1 1 1 99 1 1 111 2 4 0 6 2222222222222 0 0 5 5 33333 88888 0 2 0 1 4 55 777 444444444444 6 777 0 0 333333333 5 55 5 2 1 0 1 55 3 0 1 4 0 6 2 888 1 88888 6 66 1111111111111111111111111 666 8 99 55 55 8888 1 44444444444444444444444444444444 5 5 5 7777777777777777777 1 1111111111111111111 3 3333333333 1 1 7 3 8 2222 5 4 2 4 3 5 66 5555555555555 888 3 0
lowQualScore : .. . . .. . . ...... ................ . . . . . .... . . .. . . . .. . ... ........ .... .. . ..... . . . . . . . . . . . . ....... ......... . . . ... . ..... . . ... .. . . . .... . . . . ..... . . . . . . . . .............. . . . .. . . . . . . . . . .. . . ... . . . . ............. . . . . ..... ..... . . . . . .. ... ............ . ... . . ......... . .. . . . . . .. . . . . . . . ... . ..... . .. ......................... ... . .. .. .. .... . ................................ . . . ................... . ................... . .......... . . . . . .... . . . . . . .. ............. ... . .
lowQualScore : 00 0 5 00 0 0 555555 5555555555555555 0 0 0 0 0 0000 0 0 88 8 2 5 88 2 555 77777777 0000 33 3 00000 5 5 2 5 2 0 0 2 0 0 0 0 8888888 777777777 0 0 0 222 7 77777 7 0 777 00 0 0 0 2222 0 0 2 5 88888 5 0 8 0 0 0 0 0 88888888888888 0 2 0 00 8 0 8 8 0 8 0 0 0 22 0 0 777 5 2 8 4 8888888888888 6 1 7 3 00000 44444 1 0 8 2 0 55 000 999999999999 3 000 5 1 999999999 0 00 0 2 0 2 9 88 0 4 7 0 4 6 1 000 4 44444 0 99 2222222222222222222222222 444 2 55 66 55 5555 0 11111111111111111111111111111111 0 0 0 3333333333333333333 0 3333333333333333333 1 0000000000 4 4 1 1 1 1111 0 4 1 0 6 7 11 2222222222222 888 1 4
consensus : CTGANNACAATTCTGGAATNATATGNNTTGCTTCANAGCGAAGCNGCAAGAACAGTAATTGGTACCACCCGATCGATCTCCTTAGCTAATCTATGCAGGGAGTGNGGNTGNGTCTCNCNTGCAGAGATGAGAAC---GCAGCACAAATT-ATGTTNATGTACAAAGCTACTC--ATAATATGATCCCT---TCTTATATATCA-ACCTTA-CCCTTCTTCC-TGTAGGAGAAAAC--GTACCATATTCTTTAAGAAATAATAATGATATAAATATTCCAATCAC--GGACTGAACTAAGCCGCAAGTCATGTATACCCTCATCTATTTCAGC-TT-GAACTCNTTACCNAACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------ATCTAGANTAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-C-C-CCTCTTA-CTATAGTGA--TGGTCACAG--ATATA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACNAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCACCT-ACGCGATGANCCTTNTTGTACCTG-TT-AAATTCTATAGAANATAC-T-ATCGTTAC--TT-TTAGCTGCAATA-TTTTT--AGGAA-CCAGANAATCGTCTTATTTAACTCGACT-AGAAATTTTCACCCATTAAATTCNGAGCTTCTT--TTATTTGGAAAGACTGCACTTTCCGTTG---ATGAAAATATTGTTGTTTTCACAGCGGTTCACGAGTATATTAAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATGAC--GGCTCATTGTCAC-G---CAAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAACAGACA-A-TA----AACCTA-TCTGCTA-TCTTGTCNTTCTGCTAGTCTATATTACTGTCGCTCATTNTTTCTAC--TTAT-C-T-GTTG--TTTCT---T----T--TCGT--T-T-TT--CT---TTCCGTT--TC-TA--TT----CTTCTTNTC------------T----------TT------A-TA-TAA-AC---AG---C---TGTA---TGNATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTGTA--TACATG-TA----TA----TATTG---GCAATAAAATATGTTTAAACCA
Reference ( family-603 ) : CTGANNACAATTCTGGAATNATATGNNTTGCTTCANAGCGAAGCNGCAAGAACAGTAATTGGTACCACCCGATCGATCTCCTTAGCTAATCTATGCAGGGAGTGNGGNTGNGTCTCNCNTGCAGAGATGAGAAC---GCAGCACAAATT-ATGTTNATGTACAAAGCTACTC--ATAATATGATCCCT---TCTTATATATCA-ACCTTA-CCCTTCTTCC-TGTAGGAGAAAAC--GTACCATATTCTTTAAGAAATAATAATGATATAAATATTCCAATCAC--GGACTGAACTAAGCCGCAAGTCATGTATACCCTCATCTATTTCAGC-TT-GAACTCNTTACCNAACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------ATCTAGANTAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-C-C-CCTCTTA-CTATAGTGA--TGGTCACAG--ATATA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACNAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCACCT-ACGCGATGANCCTTNTTGTACCTG-TT-AAATTCTATAGAANATAC-T-ATCGTTAC--TT-TTAGCTGCAATA-TTTTT--AGGAA-CCAGANAATCGTCTTATTTAACTCGACT-AGAAATTTTCACCCATTAAATNCNGAGCTTCTT--TTATTTGGAAANACTGCACTTTCCGTTG---ATGAAAATATTGTTGTCTTCACAGCGGTTCACGAATACATTAAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATGAC--GGCTCATTGTCAC-G---CAAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAACAGACA-A-TA----AACCTA-TCTGCTA-TCTTGTCNTTCTGCTAGTCTATATTACTGTCGCTCATTNTTTCTAC--TTAT-C-T-GTTG--TTTCT---T----T--TCGT--T-T-TT--CT---TTCCGTT--TC-TA--TT----CTTCTTNTC------------T----------TT------A-TA-TAA-AC---AG---C---TGTA---TGNATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTGTA--TACATG-TA----TA----TATTG---GCAATAAAATATGTTTAAACCA
gi|1 : CTGAATATAATTCTGAAATGAT-TGAATTACTTCAAAACGAAGCAGCAAGAATAGTAA------CCACCCAATCGATCTCCTTAGCTAATCTATACAGAGAGTGTGGATGGGTCTCTCTTGCAGAGATGAGAAA---GCAGCATAAATTGATATTTATGTACAAAGCTACTC--ATAACATGATCCCG---TCTTATATATCAGACTTTATCCCTTCTTC--TGTAGGAGAAAAC--GTACCATATTCCTTAAGAAATAATAATGATGTAAATATTCCAATTACTCGGACTGAACTAAGCCGCAAATCATGTATACCCTCATCTATTTCAGT-TTTGAACTCTTTACCAAACG-AGCTCAGAAATACTGCTACAGTATCGAT-------TTTTAA---------ATCTAGATTAAAGGCCTATCTTCTAGAAGTAGTTA-ATC-C-TACCTCTTA-CTATAGTTA--TGGTCAGAG--ATATA-TAG-CTG-C----TATGCATGCAAGATTGCGA-ACCAAATGTAGCAACTTGA--ACAATGACCTTTACCTTAATCACCT-ACGCGATGACCCTCACTGTACCTG-TTCAAATTCTATAGAAGATGCAG-ATCATTACCTTT-TTAGATGCAATC-TTTTT--AGGAA-CCAGATAATCGTCTTATTTGACTCGACT-AGAAATTTTCACCCATTAAATGCAGAGCTTCTT--TTATTTGGAAAGACTGCACTTTCTATTG---ATGAAAACATTGTTGTTTTCACAGCGGTTCACGAATATATTAAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATAAC--AGCTCATTGTCAT-T---TAAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCTTAAATAGCT--TTTAAAT---CTAAGTACCTGACTTAACAGACA-A-TA----AATCTA-TCTTATA-TCTTATCTTTTTGCTAATCTATATTACTATCGCTCATTCTTTCTAC--TTACACAT-GTTG--TTTCT---T----T--TCAT--TATATT--CT---TTCCACT--TC-TA--AT----TTTCTTCTG------------T----------TT------A-TA-TAA-AC---AG---C---TAAA---TGCATTGT-GACAACCTTAAT-TGT--CGTTT--A-GTACATAGCCATTGTCAATTGAATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTATA--TACATG-TA----TA----TATTG---GCAATAAAATATGTTTAAACCA
gi|10 : --T-T-TT--CT---TTC--TT--CC-TAAATT----CTTCATCTC------------T----------TT------AATAGTAA-TCTG-AG---A---TATAAATCAAATTGT-TTTATCTACAATATGC--TGTTT--A-CC-TGTA---ATTGTCA-TT-AAGAGTATTTGTAATACATTTTG-TGCAGGGAAAGGCCGTATCTAATGTTGGTAGAACTTGTGACCAAACT--ATTT--TGTT--TATAT---A----AA----TATTAAAAGCAATAAAATATGTTTAAACCA
gi|11 : c---TTCTGTT--TC-TC--TT----TTCAATATC------------T----------TT------A-TA-TAA-AG---AG---C---TGT----TATAT-------------GCT-TCT--CGTTT--A-TTCCGTAGCCATTGNNNNNN-NNNNNNNNNNNNNNNN----NNN-NN-NNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-N---GCTGTA--TACATG-TA----TACTTATATTG---GCAATAAAACATAATTCAACCAaaacta
gi|12 : cTA--TTTCT---TGTTAT--TTGT--T-T-TAA-CT---TTGCATTA-TA-TA--TT--------TTATT------------T----------TC------A-CA-TCA-AA---AG---C---TTT----TGC-TTGT----AATGTAAATATGCA-TGCTT--ATATATA-AACCATTGTCAATT-A-CTGT-TTTATGATA----TGA-CG-AGGGAAGAACTGAATCTAA-GTTGTGAGACCTTGTGGTTAAACAA-ATTTGCTATA--TAagc
gi|13 : tctctcacta---T----C--TCGT--T-C-CT--CTAAATTC-ATT--TA-TA--TT----CTCCTACCC------------T----------AT------A-AA-TAA-ACGACAA---C---TATA---TGAATTGT-GATAACATAAAT-GTT--CGCGT--A-ATAAAAAGTTACTATCAACTAAATTGT-TTTGGAAAA----CTCTTA-CGCAAAGGGTTGAAATTAA-ATTGAAGGAA
gi|14 : gATATTACTATTGCTTATTATTTTTTC---TAT-T-A-GCTG--TTTCT---T----TAATCATTGT-T-TT--AT---GTCCGTT--TC-TG--TTTGAACTTCCTTTTAATATAATTTAAT----------TT------A-TG-CAA-AT----G---CCAATGTA---AGTATTGT-GACAAC
gi|15 : AATATATTGTTTTACTGGTTATATTTAAATTA-AA--TG---TATC---ACTAATT--GT--AAT---CCAAGTGCCTGACTAAACAAAAA-AACA----GACCTA-TCCGCTA-TCTTATCATTCTGCTAGTCAATATTACTcttaactctgacttgtcaatatta
gi|16 : AGTCTTAA-AATGAC--AGCTCATTGTCAC-A---CAAGAAATATATTATTTTGCCAGTTATTTTTAAAACA-AA--TG---TATCTTAAATAGCT--TTAAAAT---CTAAGTACCTCACTTAACAGAAA-A-TA----Aa
gi|17 : -AAGGAACAGCCGAATCCTA-GTTGCAAGAACGTGTGTTCCAATCC-ATTTGCGGTA--TAAATG-TATACTTA----TATTG---GTCATAAACAACTTTTAAACCA
gi|18 : gAA-AATGAC--AGCTCATTGTCAC-A---CAAGAAATTTATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATC--------TT--TTTAAAT---CCAAGTACCTGACTAAACAGACA-A-Tacgatgatattca
gi|19 : cgaACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------GTCTAGATTAAAGGCCTATCTTCCAGAAGTAG-TA-ATC-CGC-CCTCTTA-ATATAGTGA--TGGTC
gi|2 : GACTGAACTTAGCCGCAAATCATGTATACCCTCATCTATTTCAGC-TTGGAACTCTTTACCAAACG-AGCTCATAGATATTGCTACAGTATCGACTTCTAAATTCTAA---------ATCTAGAATAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-CAC-CTTCTTA-CTATAATGA--TGGTCACAGATATATA-TAT-CTG-C----TATGCAAGCACGACTGCGA-ACCAAATGTAGCAACTTGA--------ACCTTAACCTTAATCATCT-ACGCGATGAACCTTGTTTTA
gi|2 : TTTT--AGGAA-CCAGAGAATCGTTTTATTTGACTCTACT-AGAAATGTTCATCCGTTAAATGCAGAGCTTCTT--TTATTTGCAAAGACTGTACTTTCCGTTG---ATGACAA-ATTGTTGTTTTCACAGCGGTTT--------------ACAACAAGTCGTTTCAAAGAGTCCT-A-AATGAC--AGCTCATTGTCAC-A---CAAGAAATTTA-TATTTTGCCGGTTATATTTAAAACA-AA--TG---TATTTTAAATAGTT--TTTAAAT---CCAATTTCTTGACTAAACAGACA-A-TT----AATCTA-TCTTATA-TCTTATCTTTCTGCTggaaccagagaatcgttttatttgactctactagaaatgttcatccgttaaatgcagagcttcttttatttgcaaagactgtactttccgttgatgacaaattgttgttttcacagcggtttacaacaagtcgtttcaaagagtcctaaatgacagctcattgtcacacaagaaatttatattttgccggttatatttaaaacaaatgtattttaaatagtttttaaatccaatttcttgactaaacagacaattaatctatcttatatcttatctttctgct
gi|20 : gactgaacttagccgcaaatcatgtataccctcatctatttcagcttggaactctttaccaaacgagctcatagatattgctacagtatcgacttctaaattctaaatctagaataaaggcctatcttccagaagtagttaatccaccttcttactataatgatggtcacagatatatatatctgctatgcaagcacgactgcgaaccaaatgtagcaacttgaaccttaaccttaatcatctacgcgatgaaccttg---TGTATTGT-AACATTCTTGAT-GGT--CGTTTTCA-ATA----GC-ATTGTCAATTGAATTGTGATTGATGAA----TTA-TA-CAGGAAACGTCGAATCCAA-GTTCAGAAAA
gi|21 : GAGAAC---GCAACACAAATTTATGTTAATGTACAAAGC-A-TCAAATAATATGGTCCCT---TCCTATA
gi|23 : aaagactgCTAA---TGAGAGAACCTGTGGCCTGAGCC--TTTTCTATAACTATATGATT----TA----TAT-----GC---AAAATATGTTTataagcgacttgattccttc
gi|24 : TA-TA-AGAAAAGAGTCGATTCTAA-GTTGACATAAATTGAAGCCCCGCCC-ATTTACTtacaattattgtat
gi|25 : CCAACCC-ATTTACTGTA--TACATG-CATACCTA----TATTG---GCAATAAAATACG-ATAAACCActgca
gi|26 : TGTAATCCAGTCC-ATTTGCTGGA--TGTATG-TA----TATT--TACTG---GCCATAAAATATGTTTAac
gi|27 : TGTGGCCCGACCCCATTT----------CATG--A----TA----TATTG---A-AATAAAATATGTTTAAACTA
gi|28 : AGCTTCTT--TTATTTGGAATTACTGTACTTTCCGTTGGCCGTGAAAATATTaaa
gi|3 : -------TTTAAA---------ATCTAGTATAAAGAC-TATCTTTCAGAAGTAAT-A-A-------CCTTTCA-TTTTATTGAGTTGGTCTAAG--ATATAATATATTGTC----TATGCATGCAATATTGTGA-AAAAAA-GTAGTAA-------A--ATGAC-TTTACCATAATCATCTTACA-GATGAACCTTTTTGACCCTGATT-ATATTATATAGACTATA--T-AT--TT-C--TT-TTAGCTGAAATACTTTTT--AGGGA-CTAGATAACCGTCTTATCTAACTCGACTGAGGAGTTT-----CATTTAATTCTGAGTTTCTT--TTATTTTGAAATACTGCACTTTCTGTTG---ATTACAATATAGTTGTCTTCAAAGCGGTTCTTGAAAACATAAAAACAAGCAGTGGTTTCAAATAGTTTTGA-AAT--T--G--TCATTG--AA-A---CAAACTACACAT--TTTTGCCGCTTAT------------A--TG---TATCATAACTA--------AA------CA-------GACTATATAGACA-T-TA----AGCCTA-ACTG------TTGTCATTCTACAAGTCTGTCTTACTGAAG-TAAGT-TTTCAAC--TT-----TAGATG--TTTCT---T----C--TTCT--T-T-TT--CC---ATTCGTC--T--TG--TT----CTTCT
gi|4 : AAATG-ACATTGATGTA-AAAGCTGCTC--ATAATATGACCCCTACATATTATATACCACACCTTAACCCTTCT-CC-TGAAGACGAAAACATGTACAATATTCTTTACGAAATAATACTGCTATAAACAGTCCA-TCACAGGGACTTAAGTGAAC-GCAGGTCATGCATACCCTTAACAATTCCAGC-TT-GAGCTCGTTACCTAATGCAG-TCAGAAACATAGTTACAGTATCGACTT-----TTTTAG---------ATCTAGCATAAAGGCTTATCTTCCAGAAGAAGCAA-GTCTC-C-CTTCTTC-TTATATTG---TTGCCACAG--ATGCG-TAT-CGG-CCTTGTATGTATGTAAGCTTACGACACAAAATGTAGCAATTTGAGCA--ATGACTTTTATCTCAATCACCT-GAGAAACGATCCCTTTTGTACATG-CT-GAAATCCGTAGTATAAACTT-ATCATTAC--TTGTTAGTTGCAATA-ATTTT--AGG-A-CC-------CGTTTTATATAACTCGACT-AG
gi|5 : CTGATAACAATTCTGGAATTATATATTTTGCTTTATAGCGAAGTTGCAAGAACAGTAATTGGTACTACCCGATCG----------CT----TATGTAGGGAGTAAGGTTACGTCTCACATGCAGAGATGAGAATACTGCA-CACAAACT-ATGT--ATGTAAAAAGTTACTC--ATGATATGTTTTAT---TCTTATATGTTA-----------TTCTTATATGTTAGAGAAAAA--TTAACACATCATGGAATACATACTAATAAAATCGATATTCCAAT--------------TAAGCCGCTTGGCTTGTATAGGATCATCTATTTTCGCTTT-GATGTAGTTGCCTGATG-GGATCAGAGACACTGTTTAAGTATCGAC-------TTTTAAAACGGAAATATCTAGATTTAAGGCCTATCTGC---AAGCA-TTATATC-C-C-CAATTTGTCTAAAGCGT--TGGTCACAG--ATACA-TAT-CTG-
gi|6 : aTG-TT-AAATTCTATAGAAGATAC-TGATAGTTAAA-TT-TTAACTGCAATA-TTTTTCTAGGAAACCGGAGAATCGTCTTTCTCAACTCGACT-AAAGAGTTTCACCCATTAAATTCTGAACTTCTTTGTCGTCTGCAAAG----------CGGTTC---ACGAATACATTGT------------------CAAGTATA-TAAAACAATCAGTCGCTACAAACAGTCTTAACAGTTATTGGATTGATTGTCACTGGTCTACGTAACAC-TT-TTTTGCCGATTATATTTAAGTTA-TA--TG---CATTATACA-------TTGAAAT---ATGTGTACCTGAATAAACAAACA-GTTA----AACCTA-TCTGCTG-TCTTTTCTTCCTGCTAGACTGTCTAACTGTTGTTCATTCTTTCTCCAGTTAT-C-T-GTT---TTTCT---C----T--TCAT-----------T---TTCCATTAATCTTG--TC----CTTCTT
gi|7 : ttAAACATAA--TGAAATATC--AATTAATGGATTGAATC---CTCAATACTTAACAAAGCAAACACA-TACTATAACCTA-TCTGCTAATCTGTTCGTT-TACCAGTCT------------TTTATTCTTTCT-C--CTAT-C-C-ATTGACTTTCCAGCT----G--TTGT--T-T-TTGTCT---TTC-GTT--TT-TA--TT----CTTTTTATT------------CACAGCATGTGTT------A-TA-CAATGC----G---T---TTAA---CGGATGATAGATAATGTTGAT--GAAACGTGC--C-ATACGTAGCCAGTGTCAAC--ATTTGTGTTTGTAAAA----TTG-TA-AGGAAAATGCCAAATCGTA-GTT-AG-GAACTGCTGGTCAAACTC-ta
gi|8 : TTTCACCCATCCATTTCCGAGCTTCCT--ATATTTAAAAAGATTTCACTTTCCAGTG---AT-AAAATTTCGTTGTATTCACAGCTGTTCATGAGTATAT---AATAACAAGGCGTTTATAAGAGTCTTAA-AATAGC--TG-TCAGTGTCAA-G---CAAGAAATATCTTATTTTTCCGGTCATATCTCAGTTA-AA--TG---TATTATAAGTTGTT--TCGAAATAAAAAAAATAAC-GTCTAAACAAACA-A-T------------TCTGCTA-TCATGCCTTTCTGGAAGGCTTCATTAATATCGCTTATTATTTCT-C--TTAT---T-G--G--CTTCT---T----T--TC------T-TT--CT---Tttgataaat
gi|9 : agTCATAT---AAACA-AACATG---TGTCATTCTTTGTT--TTAAAAT---CTAAGTTCCTGAATAAACAAACA-T-TT----AACCTAGTAT-CTA-CCTTGTCATTTTACTAGAC-ATCTTACTGTCGTTCATTAT---TAC--TTCTGC-TAGCTG--TTTCT---T----TA-TC--------TT--C----TTCTGTT--TC-TA--TT----TTTCCTGTA------------T----------TTATGTTAA-TA-TGA-AC---AATCCC---TGTA---TGCATTGT-GACAATGT-------T--CAT------AT-CGTATGCATTGTCAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTATTCAAGTTAATATGAACATTCCTTGTGTGAATTGTGTTACAATTGTTCAAACTATAGCAGATTACATTATGTCATATCAG
Unaligned ( gi|29 ): TGGTTGGTTGGAAATAACATATGTTGTAACTAA
Alignments
lowQualScore : 1 222222 4444444444444444 2222 1 2 11 111 55555555 3333 11 44444 1 2 3333333 222222222 11111 111 11 2222 1 33333 1 1 1 22222222222222 1 1 11 111 1111 11111 11111 111111111111 111111111 1 22222 2222222222222222222222222 44444444444444444444444444444444 2222222222222222222 3333333333333333333 1111111111 1 1111 2222222222222
lowQualScore : 22 1 5 22 1 1 999999 5555555555555555 1 1 1 1 1 7777 2 0 77 8 3 2 33 1 777 99999999 1111 88 7 66666 2 2 1 2 1 0 0 1 1 1 8 5 0000000 666666666 1 1 1 666 6 77777 6 1 222 11 8 8 8 1111 0 1 3 6 00000 6 0 8 1 1 0 0 1 99999999999999 0 0 0 11 3 8 3 3 8 0 1 0 1 99 1 111 2 4 0 4 1 3 22 7777 0 5 0 5 33333 88888 0 55 0 1 4 55 777 444444444444 6 777 0 0 333333333 5 55 5 2 1 0 1 55 3 0 1 4 0 6 2 888 1 88888 6 66 1111111111111111111111111 666 8 99 55 55 8888 1 44444444444444444444444444444444 5 5 5 7777777777777777777 1 1111111111111111111 3 3333333333 1 1 7 3 8 2222 5 4 2 4 3 5 66 5555555555555 888 3 0
lowQualScore : .. . . .. . . ...... ................ . . . . . .... . . .. . . . .. . ... ........ .... .. . ..... . . . . . . . . . . . . ....... ......... . . . ... . ..... . . ... .. . . . .... . . . . ..... . . . . . . . . .............. . . . .. . . . . . . . . . .. . ... . . . . . . .. .... . . . . ..... ..... . .. . . . .. ... ............ . ... . . ......... . .. . . . . . .. . . . . . . . ... . ..... . .. ......................... ... . .. .. .. .... . ................................ . . . ................... . ................... . .......... . . . . . .... . . . . . . .. ............. ... . .
lowQualScore : 00 0 5 00 0 0 555555 5555555555555555 0 0 0 0 0 0000 0 0 88 8 2 5 88 2 555 77777777 0000 33 3 00000 5 5 2 5 2 0 0 2 0 0 0 0 8888888 777777777 0 0 0 222 7 77777 7 0 777 00 0 0 0 2222 0 0 2 5 88888 5 0 8 0 0 0 0 0 88888888888888 0 2 0 00 8 0 8 8 0 8 0 6 0 22 0 777 5 2 8 0 0 2 44 6666 6 7 1 3 00000 44444 1 22 8 2 0 55 000 999999999999 3 000 5 1 999999999 0 00 0 2 0 2 9 88 0 4 7 0 4 6 1 000 4 44444 0 99 2222222222222222222222222 444 2 55 66 55 5555 0 11111111111111111111111111111111 0 0 0 3333333333333333333 0 3333333333333333333 1 0000000000 4 4 1 1 1 1111 0 4 1 0 6 7 11 2222222222222 888 1 4
consensus : CTGANNACAATTCTGGAATNATATGNNTTGCTTCANAGCGAAGCNGCAAGAACAGTAATTGGTACCACCCGATCGATCTCCTTAGCTAATCTATGCAGGGAGTGNGGNTGNGTCTCNCNTGCAGAGATGAGAAC---GCAGCACAAATT-ATGTTNATGTACAAAGCTACTC--ATAATATGATCCCT---TCTTATATATCA-ACCTTA-CCCTTCTTCC-TGTAGGAGAAAAC--GTACCATATTCTTTAAGAAATAATAATGATATAAATATTCCAATCAC--GGACTGAACTAAGCCGCAAGTCATGTATACCCTCATCTATTTCAGC-TT-GAACTCNTTACCNAACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------ATCTAGANTAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-C-C-CCTCTTA-CTATAGTGA--TGGTCACAG--ATATA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACNAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCACCT-ACGCGATGANCCTTNTTGTACCTG-TT-AAATTCTATAGAANATAC-T-ATCGTTAC--TT-TTAGCTGCAATA-TTTTT--AGGAA-CCAGANAATCGTCTTATTTAACTCGACT-AGAAATTTTCACCCATTAAATTCNGAGCTTCTT--TTATTTGGAAAGACTGCACTTTCCGTTG---ATGAAAATATTGTTGTTTTCACAGCGGTTCACGAGTATATTAAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATGAC--GGCTCATTGTCAC-G---CAAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAACAGACA-A-TA----AACCTA-TCTGCTA-TCTTGTCNTTCTGCTAGTCTATATTACTGTCGCTCATTNTTTCTAC--TTAT-C-T-GTTG--TTTCT---T----T--TCGT--T-T-TT--CT---TTCCGTT--TC-TA--TT----CTTCTTNTC------------T----------TT------A-TA-TAA-AC---AG---C---TGTA---TGNATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTGTA--TACATG-TA----TA----TATTG---GCAATAAAATATGTTTAAACCA
Reference ( family-603 ) : CTGANNACAATTCTGGAATNATATGNNTTGCTTCANAGCGAAGCNGCAAGAACAGTAATTGGTACCACCCGATCGATCTCCTTAGCTAATCTATGCAGGGAGTGNGGNTGNGTCTCNCNTGCAGAGATGAGAAC---GCAGCACAAATT-ATGTTNATGTACAAAGCTACTC--ATAATATGATCCCT---TCTTATATATCA-ACCTTA-CCCTTCTTCC-TGTAGGAGAAAAC--GTACCATATTCTTTAAGAAATAATAATGATATAAATATTCCAATCAC--GGACTGAACTAAGCCGCAAGTCATGTATACCCTCATCTATTTCAGC-TT-GAACTCNTTACCNAACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------ATCTAGANTAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-C-C-CCTCTTA-CTATAGTGA--TGGTCACAG--ATATA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACNAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCACCT-ACGCGATGANCCTTNTTGTACCTG-TT-AAATTCTATAGAANATAC-T-ATCGTTAC--TT-TTAGCTGCAATA-TTTTT--AGGAA-CCAGANAATCGTCTTATTTAACTCGACT-AGAAATTTTCACCCATTAAATTCNGAGCTTCTT--TTATTTGGAAAGACTGCACTTTCCGTTG---ATGAAAATATTGTTGTTTTCACAGCGGTTCACGAGTATATTAAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATGAC--GGCTCATTGTCAC-G---CAAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAACAGACA-A-TA----AACCTA-TCTGCTA-TCTTGTCNTTCTGCTAGTCTATATTACTGTCGCTCATTNTTTCTAC--TTAT-C-T-GTTG--TTTCT---T----T--TCGT--T-T-TT--CT---TTCCGTT--TC-TA--TT----CTTCTTNTC------------T----------TT------A-TA-TAA-AC---AG---C---TGTA---TGNATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTGTA--TACATG-TA----TA----TATTG---GCAATAAAATATGTTTAAACCA
gi|1 : CTGAATATAATTCTGAAATGAT-TGAATTACTTCAAAACGAAGCAGCAAGAATAGTAA------CCACCCAATCGATCTCCTTAGCTAATCTATACAGAGAGTGTGGATGGGTCTCTCTTGCAGAGATGAGAAA---GCAGCATAAATTGATATTTATGTACAAAGCTACTC--ATAACATGATCCCG---TCTTATATATCAGACTTTATCCCTTCTTC--TGTAGGAGAAAAC--GTACCATATTCCTTAAGAAATAATAATGATGTAAATATTCCAATTACTCGGACTGAACTAAGCCGCAAATCATGTATACCCTCATCTATTTCAGT-TTTGAACTCTTTACCAAACG-AGCTCAGAAATACTGCTACAGTATCGAT-------TTTTAA---------ATCTAGATTAAAGGCCTATCTTCTAGAAGTAGTTA-ATC-C-TACCTCTTA-CTATAGTTA--TGGTCAGAG--ATATA-TAG-CTG-C----TATGCATGCAAGATTGCGA-ACCAAATGTAGCAACTTGA--ACAATGACCTTTACCTTAATCACCT-ACGCGATGACCCTCACTGTACCTG-TTCAAATTCTATAGAAGATGCAG-ATCATTACCTTT-TTAGATGCAATC-TTTTT--AGGAA-CCAGATAATCGTCTTATTTGACTCGACT-AGAAATTTTCACCCATTAAATGCAGAGCTTCTT--TTATTTGGAAAGACTGCACTTTCTATTG---ATGAAAACATTGTTGTTTTCACAGCGGTTCACGAATATATTAAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATAAC--AGCTCATTGTCAT-T---TAAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCTTAAATAGCT--TTTAAAT---CTAAGTACCTGACTTAACAGACA-A-TA----AATCTA-TCTTATA-TCTTATCTTTTTGCTAATCTATATTACTATCGCTCATTCTTTCTAC--TTACACAT-GTTG--TTTCT---T----T--TCAT--TATATT--CT---TTCCACT--TC-TA--AT----TTTCTTCTG------------T----------TT------A-TA-TAA-AC---AG---C---TAAA---TGCATTGT-GACAACCTTAAT-TGT--CGTTT--A-GTACATAGCCATTGTCAATTGAATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTATA--TACATG-TA----TA----TATTG---GCAATAAAATATGTTTAAACCA
gi|10 : --T-T-TT--CT---TTC--TT--CC-TAAATT----CTTCATCTC------------T----------TT------AATAGTAA-TCTG-AG---A---TATAAATCAAATTGT-TTTATCTACAATATGC--TGTTT--A-CC-TGTA---ATTGTCA-TT-AAGAGTATTTGTAATACATTTTG-TGCAGGGAAAGGCCGTATCTAATGTTGGTAGAACTTGTGACCAAACT--ATTT--TGTT--TATAT---A----AA----TATTAAAAGCAATAAAATATGTTTAAACCA
gi|11 : c---TTCTGTT--TC-TC--TT----TTCAATATC------------T----------TT------A-TA-TAA-AG---AG---C---TGT----TATAT-------------GCT-TCT--CGTTT--A-TTCCGTAGCCATTGNNNNNN-NNNNNNNNNNNNNNNN----NNN-NN-NNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-N---GCTGTA--TACATG-TA----TACTTATATTG---GCAATAAAACATAATTCAACCAaaacta
gi|12 : cTA--TTTCT---TGTTAT--TTGT--T-T-TAA-CT---TTGCATTA-TA-TA--TT--------TTATT------------T----------TC------A-CA-TCA-AA---AG---C---TTT----TGC-TTGT----AATGTAAATATGCA-TGCTT--ATATATA-AACCATTGTCAATT-A-CTGT-TTTATGATA----TGA-CG-AGGGAAGAACTGAATCTAA-GTTGTGAGACCTTGTGGTTAAACAA-ATTTGCTATA--TAagc
gi|13 : tctctcacta---T----C--TCGT--T-C-CT--CTAAATTC-ATT--TA-TA--TT----CTCCTACCC------------T----------AT------A-AA-TAA-ACGACAA---C---TATA---TGAATTGT-GATAACATAAAT-GTT--CGCGT--A-ATAAAAAGTTACTATCAACTAAATTGT-TTTGGAAAA----CTCTTA-CGCAAAGGGTTGAAATTAA-ATTGAAGGAA
gi|14 : gATATTACTATTGCTTATTATTTTTTC---TAT-T-A-GCTG--TTTCT---T----TAATCATTGT-T-TT--AT---GTCCGTT--TC-TG--TTTGAACTTCCTTTTAATATAATTTAAT----------TT------A-TG-CAA-AT----G---CCAATGTA---AGTATTGT-GACAAC
gi|15 : AATATATTGTTTTACTGGTTATATTTAAATTA-AA--TG---TATC---ACTAATT--GT--AAT---CCAAGTGCCTGACTAAACAAAAA-AACA----GACCTA-TCCGCTA-TCTTATCATTCTGCTAGTCAATATTACTcttaactctgacttgtcaatatta
gi|16 : AGTCTTAA-AATGAC--AGCTCATTGTCAC-A---CAAGAAATATATTATTTTGCCAGTTATTTTTAAAACA-AA--TG---TATCTTAAATAGCT--TTAAAAT---CTAAGTACCTCACTTAACAGAAA-A-TA----Aa
gi|17 : -AAGGAACAGCCGAATCCTA-GTTGCAAGAACGTGTGTTCCAATCC-ATTTGCGGTA--TAAATG-TATACTTA----TATTG---GTCATAAACAACTTTTAAACCA
gi|18 : gAA-AATGAC--AGCTCATTGTCAC-A---CAAGAAATTTATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATC--------TT--TTTAAAT---CCAAGTACCTGACTAAACAGACA-A-Tacgatgatattca
gi|19 : cgaACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------GTCTAGATTAAAGGCCTATCTTCCAGAAGTAG-TA-ATC-CGC-CCTCTTA-ATATAGTGA--TGGTC
gi|2 : GACTGAACTTAGCCGCAAATCATGTATACCCTCATCTATTTCAGC-TTGGAACTCTTTACCAAACG-AGCTCATAGATATTGCTACAGTATCGACTTCTAAATTCTAA---------ATCTAGAATAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-CAC-CTTCTTA-CTATAATGA--TGGTCACAGATATATA-TAT-CTG-C----TATGCAAGCACGACTGCGA-ACCAAATGTAGCAACTTGA--------ACCTTAACCTTAATCATCT-ACGCGATGAACCTTGTTTTA
gi|2 : TTTT--AGGAA-CCAGAGAATCGTTTTATTTGACTCTACT-AGAAATGTTCATCCGTTAAATGCAGAGCTTCTT--TTATTTGCAAAGACTGTACTTTCCGTTG---ATGACAA-ATTGTTGTTTTCACAGCGGTTTAC--------------AACAAGTCGTTTCAAAGAGTCCTAA-A-TGAC--AGCTCATTGTCAC-A---CAAGAAATTTAT-ATTTTGCCGGTTATATTTAAAACA-AA--TG---TATTTTAAATAGTT--TTTAAAT---CCAATTTCTTGACTAAACAGACA-A-TT----AATCTA-TCTTATA-TCTTATCTTTCTGCTggaaccagagaatcgttttatttgactctactagaaatgttcatccgttaaatgcagagcttcttttatttgcaaagactgtactttccgttgatgacaaattgttgttttcacagcggtttacaacaagtcgtttcaaagagtcctaaatgacagctcattgtcacacaagaaatttatattttgccggttatatttaaaacaaatgtattttaaatagtttttaaatccaatttcttgactaaacagacaattaatctatcttatatcttatctttctgct
gi|20 : gactgaacttagccgcaaatcatgtataccctcatctatttcagcttggaactctttaccaaacgagctcatagatattgctacagtatcgacttctaaattctaaatctagaataaaggcctatcttccagaagtagttaatccaccttcttactataatgatggtcacagatatatatatctgctatgcaagcacgactgcgaaccaaatgtagcaacttgaaccttaaccttaatcatctacgcgatgaaccttg---TGTATTGT-AACATTCTTGAT-GGT--CGTTTTCA-ATA----GC-ATTGTCAATTGAATTGTGATTGATGAA----TTA-TA-CAGGAAACGTCGAATCCAA-GTTCAGAAAA
gi|21 : GAGAAC---GCAACACAAATTTATGTTAATGTACAAAGC-A-TCAAATAATATGGTCCCT---TCCTATA
gi|23 : aaagactgCTAA---TGAGAGAACCTGTGGCCTGAGCC--TTTTCTATAACTATATGATT----TA----TAT-----GC---AAAATATGTTTataagcgacttgattccttc
gi|24 : TA-TA-AGAAAAGAGTCGATTCTAA-GTTGACATAAATTGAAGCCCCGCCC-ATTTACTtacaattattgtat
gi|25 : CCAACCC-ATTTACTGTA--TACATG-CATACCTA----TATTG---GCAATAAAATACG-ATAAACCActgca
gi|26 : TGTAATCCAGTCC-ATTTGCTGGA--TGTATG-TA----TATT--TACTG---GCCATAAAATATGTTTAac
gi|27 : TGTGGCCCGACCCCATTT----------CATG--A----TA----TATTG---A-AATAAAATATGTTTAAACTA
gi|28 : AGCTTCTT--TTATTTGGAATTACTGTACTTTCCGTTGGCCGTGAAAATATTaaa
gi|3 : -------TTTAAA---------ATCTAGTATAAAGAC-TATCTTTCAGAAGTAAT-A-A-------CCTTTCA-TTTTATTGAGTTGGTCTAAG--ATATAATATATTGTC----TATGCATGCAATATTGTGA-AAAAAA-GTAGTAA-------A--ATGAC-TTTACCATAATCATCTTACA-GATGAACCTTTTTGACCCTGATT-ATATTATATAGACTATA--T-AT--TT-C--TT-TTAGCTGAAATACTTTTT--AGGGA-CTAGATAACCGTCTTATCTAACTCGACTGAGGAGTTT-----CATTTAATTCTGAGTTTCTT--TTATTTTGAAATACTGCACTTTCTGTTG---ATTACAATATAGTTGTCTTCAAAGCGGTTCTTGAAAACATAAAAACAAGCAGTGGTTTCAAATAGTTTTGA-AAT--T--G--TCATTG--AA-A---CAAACTACACAT--TTTTGCCGCTTAT------------A--TG---TATCATAACTA--------AA------CA-------GACTATATAGACA-T-TA----AGCCTA-ACTG------TTGTCATTCTACAAGTCTGTCTTACTGAAG-TAAGT-TTTCAAC--TT-----TAGATG--TTTCT---T----C--TTCT--T-T-TT--CC---ATTCGTC--T--TG--TT----CTTCT
gi|4 : AAATG-ACATTGATGTA-AAAGCTGCTC--ATAATATGACCCCTACATATTATATACCACACCTTAACCCTTCT-CC-TGAAGACGAAAACATGTACAATATTCTTTACGAAATAATACTGCTATAAACAGTCCA-TCACAGGGACTTAAGTGAAC-GCAGGTCATGCATACCCTTAACAATTCCAGC-TT-GAGCTCGTTACCTAATGCAG-TCAGAAACATAGTTACAGTATCGACTT-----TTTTAG---------ATCTAGCATAAAGGCTTATCTTCCAGAAGAAGCAA-GTCTC-C-CTTCTTC-TTATATTG---TTGCCACAG--ATGCG-TAT-CGG-CCTTGTATGTATGTAAGCTTACGACACAAAATGTAGCAATTTGAGCA--ATGACTTTTATCTCAATCACCT-GAGAAACGATCCCTTTTGTACATG-CT-GAAATCCGTAGTATAAACTT-ATCATTAC--TTGTTAGTTGCAATA-ATTTT--AGG-A-CC-------CGTTTTATATAACTCGACT-AG
gi|5 : CTGATAACAATTCTGGAATTATATATTTTGCTTTATAGCGAAGTTGCAAGAACAGTAATTGGTACTACCCGATCG----------CT----TATGTAGGGAGTAAGGTTACGTCTCACATGCAGAGATGAGAATACTGCA-CACAAACT-ATGT--ATGTAAAAAGTTACTC--ATGATATGTTTTAT---TCTTATATGTTA-----------TTCTTATATGTTAGAGAAAAA--TTAACACATCATGGAATACATACTAATAAAATCGATATTCCAAT--------------TAAGCCGCTTGGCTTGTATAGGATCATCTATTTTCGCTTT-GATGTAGTTGCCTGATG-GGATCAGAGACACTGTTTAAGTATCGAC-------TTTTAAAACGGAAATATCTAGATTTAAGGCCTATCTGC---AAGCA-TTATATC-C-C-CAATTTGTCTAAAGCGT--TGGTCACAG--ATACA-TAT-CTG-
gi|6 : aTG-TT-AAATTCTATAGAAGATAC-TGATAGTTAAA-TT-TTAACTGCAATA-TTTTTCTAGGAAACCGGAGAATCGTCTTTCTCAACTCGACT-AAAGAGTTTCACCCATTAAATTCTGAACTTCTTTGTCGTCTGCAAAG----------CGGTTC---ACGAATACATTGT------------------CAAGTATA-TAAAACAATCAGTCGCTACAAACAGTCTTAACAGTTATTGGATTGATTGTCACTGGTCTACGTAACAC-TT-TTTTGCCGATTATATTTAAGTTA-TA--TG---CATTATACA-------TTGAAAT---ATGTGTACCTGAATAAACAAACA-GTTA----AACCTA-TCTGCTG-TCTTTTCTTCCTGCTAGACTGTCTAACTGTTGTTCATTCTTTCTCCAGTTAT-C-T-GTT---TTTCT---C----T--TCAT-----------T---TTCCATTAATCTTG--TC----CTTCTT
gi|7 : ttAAACATAA--TGAAATATC--AATTAATGGATTGAATC---CTCAATACTTAACAAAGCAAACACA-TACTATAACCTA-TCTGCTAATCTGTTCGTT-TACCAGTCT------------TTTATTCTTTCT-C--CTAT-C-C-ATTGACTTTCCAGCT----G--TTGT--T-T-TTGTCT---TTC-GTT--TT-TA--TT----CTTTTTATT------------CACAGCATGTGTT------A-TA-CAATGC----G---T---TTAA---CGGATGATAGATAATGTTGAT--GAAACGTGC--C-ATACGTAGCCAGTGTCAAC--ATTTGTGTTTGTAAAA----TTG-TA-AGGAAAATGCCAAATCGTA-GTT-AG-GAACTGCTGGTCAAACTC-ta
gi|8 : TTTCACCCATCCATTTCCGAGCTTCCT--ATATTTAAAAAGATTTCACTTTCCAGTG---AT-AAAATTTCGTTGTATTCACAGCTGTTCATGAGTATAT---AATAACAAGGCGTTTATAAGAGTCTTAA-AATAGC--TG-TCAGTGTCAA-G---CAAGAAATATCTTATTTTTCCGGTCATATCTCAGTTA-AA--TG---TATTATAAGTTGTT--TCGAAATAAAAAAAATAAC-GTCTAAACAAACA-A-T------------TCTGCTA-TCATGCCTTTCTGGAAGGCTTCATTAATATCGCTTATTATTTCT-C--TTAT---T-G--G--CTTCT---T----T--TC------T-TT--CT---Tttgataaat
gi|9 : agTCATAT---AAACA-AACATG---TGTCATTCTTTGTT--TTAAAAT---CTAAGTTCCTGAATAAACAAACA-T-TT----AACCTAGTAT-CTA-CCTTGTCATTTTACTAGAC-ATCTTACTGTCGTTCATTATT---AC--TTCTGC-TAGCTG--TTTCT---T----TA-TC--------TT--CT---T-CTGTT--TC-TA--TT----TTTCCTGTA------------T----------TTATGTTAA-TA-TGA-AC---AATCCC---TGTA---TGCATTGT-GACAATGT-------T--CAT------AT-CGTATGCATTGTCAAT
blockSeqs : TA T A TT T T TTGGTA CT A T C A A TACT A T TA C T C AA G ACA CACCTTAA TATA AT A CACAG G C T C A T G A T A C C TTCTAAA AACGGAAAT T C C GTT T CGC T G AGT AT A A T CTTG C C T C GCA C T C A G A . T CTGATAGTTAAA G C CT A A A G G A A TG C GCC G T T A G AA TAAA C G TGGAT TGGTC TG T T CA AAA TTAAATAGCT A AAA CATACTAT G GC A A A T AA A T C A T AGT A GCTA C AC TGTTATTTGTTTTAA AAA T AA CT AA TGAA C TAATATAATTTAATTT A G T TGAGATATAAAT A AGATAATGTTGATGAAA T ATTCCGT G C A A A CATT T C G T C G AC TATACTTA AAA A
blockSeqs : C . . TG A T C . A . . CC . . . T G G C G . . G G T . C TT . A C C GCA . CAC . A A . . . . . . A T T A T . A A T . . T CTTATCATTAC . . . G . A T . T T . G . G T C T A GT TAA . G AGC A TA A . . . TTAAATAGTT T . AACA . TA . A T T TG A A T C A T A TA A . AGCTGTTGTTTTTGT . C A C . . A TCACAGCATGTGTT . . . GACAACTATA T TTTATCTACAATATGC T ATATATA A C G N N . . . N . . G . TATACTTA . A
blockSeqs : . . . . . . T . . . A . T . . T G T . A . . A T C GT . TCC . T A . . . . . . A . . . . . . T T . . G TATTTC . . . A . G G . A T . G . T C A A G GT T . G AGC A TA A . . . AATTAATGGA T . GTTA . GC . G A A TG C T T C C C A TA T . TTAATCATTGTTTT . C . C . . A ATTTATGTTA . . . AATCCCTGTA C GATAACATAAATGTT T AATAAAA G T . A G . . . A . . G . CATACCTA . C
blockSeqs : . . . . A C C AT . CC . T T . . . . . . . . . . C C . C . G T . . . . . . T AGC A TA A . . . ATAAGTTGTT G . ATA . GC . T T T TT C C C A A T A CT T . TCTCGTTCCT . C . A . . C CTTT . . . GCCAATGTA A AACATTCTTGATGGT G CATACGT G C . A G . . . G . . T . TATATT . A
blockSeqs : . . T . . TT . . . G . . A . . . . A TG A A T . . . ATTCTTTGTT G . ATT . GC . T G G T A C T A . T C CC C . TCTTCTTTTT . C . A . . T CTTT . . . AGCTGT T AATGTAAATATGCA T ACCTGT G C . T . . . . A . . A . ATTTA . C
blockSeqs : . . G G T A . . . ACTAATT G . TTA . G . G T A A C . . . . . . T . . TTTCTTT . T . C . . A TTTC . . . AGCTTT T GACAATGTT G TCAATA T . . . . . . . C . . A . AAA . A
blockSeqs : . T . . . ATAACTA A . TTT . C . G A . . TTATCTT . . . T . . G CTAT . . . GTTTAA G GCTTCT . ATCGT . . . . A . . G . ATA . .
blockSeqs : A . . . ATACA . . AT CTTCAT . . . C . . C . T . . . .
blockSeqs : . . . . TT . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : NT* CN*** TNTTNTTTTT*************** GTAGCTGTA********** ATACTTA******
originalCons : CTGANNACAATTCTGGAATNATATGNNTTGCTTCANAGCGAAGCNGCAAGAACAGTAATTGGTACCACCCGATCGATCTCCTTAGCTAATCTATGCAGGGAGTGNGGNTGNGTCTCNCNTGCAGAGATGAGAAC---GCAGCACAAATT-ATGTTNATGTACAAAGCTACTC--ATAATATGATCCCT---TCTTATATATCA-ACCTTA-CCCTTCTTCC-TGTAGGAGAAAAC--GTACCATATTCTTTAAGAAATAATAATGATATAAATATTCCAATCAC--GGACTGAACTAAGCCGCAAGTCATGTATACCCTCATCTATTTCAGC-TT-GAACTCNTTACCNAACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------ATCTAGANTAAAGGCCTATCTTCCAGAAGTAGTTA-ATC-C-C-CCTCTTA-CTATAGTGA--TGGTCACAG--ATATA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACNAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCACCT-ACGCGATGANCCTTNTTGTACCTG-TT-AAATTCTATAGAANATAC-T-ATCGTTAC--TT-TTAGCTGCAATA-TTTTT--AGGAA-CCAGANAATCGTCTTATTTAACTCGACT-AGAAATTTTCACCCATTAAATTCNGAGCTTCTT--TTATTTGGAAAGACTGCACTTTCCGTTG---ATGAAAATATTGTTGTTTTCACAGCGGTTCACGAGTATATTAAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATGAC--GGCTCATTGTCAC-G---CAAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAACAGACA-A-TA----AACCTA-TCTGCTA-TCTTGTCNTTCTGCTAGTCTATATTACTGTCGCTCATTNTTTCTAC--TTAT-C-T-GTTG--TTTCT---T----T--TCGT--T-T-TT--CT---TTCCGTT--TC-TA--TT----CTTCTTNTC------------T----------TT------A-TA-TAA-AC---AG---C---TGTA---TGNATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTGTA--TACATG-TA----TA----TATTG---GCAATAAAATATGTTTAAACCA
finalCons : CTGANNACAATTCTGGAATNATATGNNTTGCTTCANAGCGAAGCNGCAAGAACAGTAATTGGTACCACCCGATCGATCTCCTTAGCTAATCTATGCAGGGAGTGNGGNTGNGTCTCNCNTGCAGAGATGAGAAC---GCAGCACAAATT-ATGTTNATGTACAAAGCTACTC--ATAATATGATCCCT---TCTTATATATCA-ACCTTA-CCCTTCTTCC-TGTAGGAGAAAAC--GTACCATATTCTTTAAGAAATAATAATGATATAAATATTCCAATCAC--GGACTGAACTAAGCCGCAAGTCATGTATACCCTCATCTATTTCAGC-TT-GAACTCNTTACCNAACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------ATCTAGANTAAAGGCCTATCTTCCAGAAGTANT-A-ATC-C-C-CCTCTTA-CTATAGTGA--TGGTCACAG--ATATA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACNAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCACCT-ACGCGATGANCCTTNTTGTACCTG-TT-AAATTCTATAGAANATAC-T-ATCGTTAC--TT-TTAGCTGCAATA-TTTTT--AGGAA-CCAGANAATCGTCTTATTTAACTCGACT-AGAAATTTTCACCCATTAAATTCNGAGCTTCTT--TTATTTGGAAAGACTGCACTTTCCGTTG---ATGAAAATATTGTTGTTTTCACAGCGGTTCACGAGTATATTAAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATGAC--GGCTCATTGTCAC-G---CAAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAACAGACA-A-TA----AACCTA-TCTGCTA-TCTTGTCNTTCTGCTAGTCTATATTACTGTCGCTCATTNTTTCTAC--TTATCN---GTTG--TTTCTTNTTNTTTTT---------------CT---TTCCGTT--TC-TA--TT----CTTCTTNTC------------T----------TT------A-TA-TAA-ACGTAGCTGTA----------TGNATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTGTA--TACATGATACTTA------TATTG---GCAATAAAATATGTTTAAACCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTATTCAAGTTAATATGAACATTCCTTGTGTGAATTGTGTTACAATTGTTCAAACTATAGCAGATTACATTATGTCATATCAG
Unaligned ( gi|29 ): TGGTTGGTTGGAAATAACATATGTTGTAACTAA
Alignments
lowQualScore : 1 222222 4444444444444444 2222 1 2 11 111 55555555 3333 11 44444 1 1 1 3333333 222222222 11111111 111 11 2222 1 33333 1 1 1 22222222222222 1 1 11 111 1111 11111 11111 111111111111 111111111 111 222222222222222222 11111111 11 5555555555555555555555555555555555555555555555555555555555 3333333333333333333 1111111111 1 1111 222222
lowQualScore : 22 1 5 22 1 1 999999 5555555555555555 1 1 1 1 1 7777 2 0 77 8 3 2 33 1 777 99999999 1111 88 7 66666 2 2 1 2 1 0 0 0 1 1 1 8 5 0000000 666666666 1 1 1 7777 6 77777777 6 1 222 11 8 8 8 1111 0 1 3 6 00000 6 0 8 1 1 0 0 1 99999999999999 0 0 0 11 3 8 3 3 8 0 1 0 1 99 1 111 2 4 0 4 1 3 22 7777 0 5 0 5 33333 88888 0 5 3 1 4 55 777 444444444444 6 777 0 0 333333333 5 55 5 2 1 0 1 55 3 0 1 4 0 6 000 555555555555555555 9999999 1 66666666 22 0 4 99 55 55 8888 1 2222222222222222222222222222222222222222222222222222222222 1 1111111111111111111 3 3333333333 1 1 7 3 8 2222 5 4 2 4 3 5 66 777777 888 3 0
lowQualScore : .. . . .. . . ...... ................ . . . . . .... . . .. . . . .. . ... ........ .... .. . ..... . . . . . . . . . . . . . ....... ......... . . . .... . ........ . . ... .. . . . .... . . . . ..... . . . . . . . . .............. . . . .. . . . . . . . . . .. . ... . . . . . . .. .... . . . . ..... ..... . . . . . .. ... ............ . ... . . ......... . .. . . . . . .. . . . . . . ... .................. ....... . ........ .. . . .. .. .. .... . .......................................................... . ................... . .......... . . . . . .... . . . . . . .. ...... ... . .
lowQualScore : 00 0 5 00 0 0 555555 5555555555555555 0 0 0 0 0 0000 0 0 88 8 2 5 88 2 555 77777777 0000 33 3 00000 5 5 2 5 2 0 0 0 2 0 0 0 0 8888888 777777777 0 0 0 8888 7 77777777 7 0 777 00 0 0 0 2222 0 0 2 5 88888 5 0 8 0 0 0 0 0 88888888888888 0 2 0 00 8 0 8 8 0 8 0 6 0 22 0 777 5 2 8 0 0 2 44 6666 6 7 1 3 00000 44444 1 1 6 2 0 55 000 999999999999 3 000 5 1 999999999 0 00 0 2 0 2 9 88 0 4 7 0 4 6 000 111111111111111111 5555555 0 22222222 22 9 1 55 66 55 5555 0 3333333333333333333333333333333333333333333333333333333333 0 3333333333333333333 1 0000000000 4 4 1 1 1 1111 0 4 1 0 6 7 11 000000 888 1 4
consensus : CTGANNACAATTCTGGAATNATATGNNTTGCTTCANAGCGAAGCNGCAAGAACAGTAATTGGTACCACCCGATCGATCTCCTTAGCTAATCTATGCAGGGAGTGNGGNTGNGTCTCNCNTGCAGAGATGAGAAC---GCAGCACAAATT-ATGTTNATGTACAAAGCTACTC--ATAATATGATCCCT---TCTTATATATCA-ACCTTA-CCCTTCTTCC-TGTAGGAGAAAAC--GTACCATATTCTTTAAGAAATAATAATGATATAAATATTCCAATCAC--GGACTGAACTAAGCCGCAAGTCATGTATACCCTCATCTATTTCAGC-TT-G-AACTCNTTACCNAACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------ATCTAGANTAAAGGCCTATCTTCCAGAAGTA-GT-A-A-TC-C-C-CCTCTTA-CTATAGTGA--TGGTCACAG--ATATA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACNAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCACCT-ACGCGATGANCCTTNTTGTACCTG-TT-AAATTCTATAGAANATAC-T-ATCGTTAC--TT-TTAGCTGCAATA-TTTTT--AGGAA-CCAGANAATCGTCTTATTTAACTCGACT-AGAAATTTTCACCCATTAAATTCNGAGCTTCTT--TTATTTGGAAAGACTGCACTTTCCGTTG---ATGAAAATATTGTTGTTTTCACAGCGGTTCACGAGTATATTAAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATGAC--GGCTCATTGTCAC-G---CAAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAACAGACA-A-TA----AACCTA-TCTGCTA-TCTTGTCNTTCTGCTAGTCTATATTACTGTCGCTCATTNT---TTCTNC--TTAT-C-NGTTG--TTTCT---T--NTCGT--T-T---TT--CTTTCCGTT--TC-TA--TT----CTTCTTNTC------------T----------TT------A-TA-T-AA-AC-G-CAGCTGTA---TGNATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTGTA--TACATGTATACTTATATTG---GCAATAAAATATGTTTAAACCA
Reference ( family-603 ) : CTGANNACAATTCTGGAATNATATGNNTTGCTTCANAGCGAAGCNGCAAGAACAGTAATTGGTACCACCCGATCGATCTCCTTAGCTAATCTATGCAGGGAGTGNGGNTGNGTCTCNCNTGCAGAGATGAGAAC---GCAGCACAAATT-ATGTTNATGTACAAAGCTACTC--ATAATATGATCCCT---TCTTATATATCA-ACCTTA-CCCTTCTTCC-TGTAGGAGAAAAC--GTACCATATTCTTTAAGAAATAATAATGATATAAATATTCCAATCAC--GGACTGAACTAAGCCGCAAGTCATGTATACCCTCATCTATTTCAGC-TT-G-AACTCNTTACCNAACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------ATCTAGANTAAAGGCCTATCTTCCAGAAGTA-NT-A-A-TC-C-C-CCTCTTA-CTATAGTGA--TGGTCACAG--ATATA-TAT-CTG-C----TATGCATGCAAGATTGCGA-ACNAAATGTAGCAACTTGA--A--ATGACCTTTACCTTAATCACCT-ACGCGATGANCCTTNTTGTACCTG-TT-AAATTCTATAGAANATAC-T-ATCGTTAC--TT-TTAGCTGCAATA-TTTTT--AGGAA-CCAGANAATCGTCTTATTTAACTCGACT-AGAAATTTTCACCCATTAAATTCNGAGCTTCTT--TTATTTGGAAAGACTGCACTTTCCGTTG---ATGAAAATATTGTTGTTTTCACAGCGGTTCACGAGTATATTAAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATGAC--GGCTCATTGTCAC-G---CAAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCNTAANTAGTT--TTNAAAT---CCAAGTACCTGACTAAACAGACA-A-TA----AACCTA-TCTGCTA-TCTTGTCNTTCTGCTAGTCTATATTACTGTCGCTCATTNT---TTCTAC--TTAT-C-NGTTG--TTTCT---T--NTTNT--T-T---TT--CTTTCCGTT--TC-TA--TT----CTTCTTNTC------------T----------TT------A-TA-T-AA-AC-G-TAGCTGTA---TGNATTGT-GACAACGTCGAT-TGT--CGTTT--A-ATACGTAGCCATTGTCAATT-AATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTGTA--TACATG-ATACTTATATTG---GCAATAAAATATGTTTAAACCA
gi|1 : CTGAATATAATTCTGAAATGAT-TGAATTACTTCAAAACGAAGCAGCAAGAATAGTAA------CCACCCAATCGATCTCCTTAGCTAATCTATACAGAGAGTGTGGATGGGTCTCTCTTGCAGAGATGAGAAA---GCAGCATAAATTGATATTTATGTACAAAGCTACTC--ATAACATGATCCCG---TCTTATATATCAGACTTTATCCCTTCTTC--TGTAGGAGAAAAC--GTACCATATTCCTTAAGAAATAATAATGATGTAAATATTCCAATTACTCGGACTGAACTAAGCCGCAAATCATGTATACCCTCATCTATTTCAGT-TTTG-AACTCTTTACCAAACG-AGCTCAGAAATACTGCTACAGTATCGAT-------TTTTAA---------ATCTAGATTAAAGGCCTATCTTCTAGAAGTA-GTTA-A-TC-C-TACCTCTTA-CTATAGTTA--TGGTCAGAG--ATATA-TAG-CTG-C----TATGCATGCAAGATTGCGA-ACCAAATGTAGCAACTTGA--ACAATGACCTTTACCTTAATCACCT-ACGCGATGACCCTCACTGTACCTG-TTCAAATTCTATAGAAGATGCAG-ATCATTACCTTT-TTAGATGCAATC-TTTTT--AGGAA-CCAGATAATCGTCTTATTTGACTCGACT-AGAAATTTTCACCCATTAAATGCAGAGCTTCTT--TTATTTGGAAAGACTGCACTTTCTATTG---ATGAAAACATTGTTGTTTTCACAGCGGTTCACGAATATATTAAAACAACAAGTCGTTTCAAAGAGTCTTAA-AATAAC--AGCTCATTGTCAT-T---TAAGAAATATATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATCTTAAATAGCT--TTTAAAT---CTAAGTACCTGACTTAACAGACA-A-TA----AATCTA-TCTTATA-TCTTATCTTTTTGCTAATCTATATTACTATCGCTCATTCT---TTCTAC--TTACACATGTTG--TTTCT---T--TTCAT--TATA--TT--CTTTCCACT--TC-TA--AT----TTTCTTCTG------------T----------TT------A-TA-T-AA-AC----AGCTAAA---TGCATTGT-GACAACCTTAAT-TGT--CGTTT--A-GTACATAGCCATTGTCAATTGAATTGTGTTTGTAAAA----TTA-TA-AGGGAAGGGCCGAATCTAA-GTTGAGAGAACTTGTGGCCCAACCC-ATTTGCTATA--TACATG--TA--TATATTG---GCAATAAAATATGTTTAAACCA
gi|10 : --T-T---TT--CTTTC--TT--CC-TAAATT----CTTCATCTC------------T----------TT------AATAGT-AA-TC-T-GAGATATAAATCAAATTGT-TTTATCTACAATATGC--TGTTT--A-CC-TGTA---ATTGTCA-TT-AAGAGTATTTGTAATACATTTTG-TGCAGGGAAAGGCCGTATCTAATGTTGGTAGAACTTGTGACCAAACT--ATTT--TGTT--TATATA-A-----ATATTAAAAGCAATAAAATATGTTTAAACCA
gi|11 : cTTCTGTT--TC-TC--TT----TTCAATATC------------T----------TT------A-TA-T-AA-A--G--AGCTGT----TATAT-------------GCT-TCT--CGTTT--A-TTCCGTAGCCATTGNNNNNN-NNNNNNNNNNNNNNNN----NNN-NN-NNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-N---GCTGTA--TACATGTATACTTATATTG---GCAATAAAACATAATTCAACCAaaacta
gi|12 : cTA--TTTCT---T--GTTAT--T-TGTTTTAACTTTGCATTA-TA-TA--TT--------TTATT------------T----------TC------A-CA-TCAA-A-----AGCTTT----TGC-TTGT----AATGTAAATATGCA-TGCTT--ATATATA-AACCATTGTCAATT-A-CTGT-TTTATGATA----TGA-CG-AGGGAAGAACTGAATCTAA-GTTGTGAGACCTTGTGGTTAAACAA-ATTTGCTATA--TAagc
gi|13 : tctctcactaTTCATT--TA-TA--TT----CTCCTACCC------------T----------AT------A-AA-T-AA-AC-GACAACTATA---TGAATTGT-GATAACATAAAT-GTT--CGCGT--A-ATAAAAAGTTACTATCAACTAAATTGT-TTTGGAAAA----CTCTTA-CGCAAAGGGTTGAAATTAA-ATTGAAGGAA
gi|14 : gtctcgttcctctaaaATATTACTATTGCTTATTAT---TTTTTC---TAT-T-AGCTG--TTTCT---TTAATCATTGT-T---TT--ATGTCCGTT--TC-TG--TTTGAACTTCCTTTTAATATAATTTAAT----------TT------A-TG-C-AA-AT-G-CCAATGTA---AGTATTGT-GACAAC
gi|15 : AATATATTGTTTTACTGGTTATATTTAAATTA-AA--TG---TATC---ACTAATT--GT--AAT---CCAAGTGCCTGACTAAACAAAAA-AACA----GACCTA-TCCGCTA-TCTTATCATTCTGCTAGTCAATATTACTcttaactctgacttgtcaatatta
gi|16 : AGTCTTAA-AATGAC--AGCTCATTGTCAC-A---CAAGAAATATATTATTTTGCCAGTTATTTTTAAAACA-AA--TG---TATCTTAAATAGCT--TTAAAAT---CTAAGTACCTCACTTAACAGAAA-A-TA----Aa
gi|17 : -AAGGAACAGCCGAATCCTA-GTTGCAAGAACGTGTGTTCCAATCC-ATTTGCGGTA--TAAATGTATACTTATATTG---GTCATAAACAACTTTTAAACCA
gi|18 : gAA-AATGAC--AGCTCATTGTCAC-A---CAAGAAATTTATTATTTTGCCGGTTATATTTAAAACA-AA--TG---TATC--------TT--TTTAAAT---CCAAGTACCTGACTAAACAGACA-A-Tacgatgatattca
gi|19 : cgaACG-AGCTCAGAGATACTGCTACAGTATCGAC-------TTTTAA---------GTCTAGATTAAAGGCCTATCTTCCAGAAGTA-GT-A-A-TC-CGC-CCTCTTA-ATATAGTGA--TGGTC
gi|2 : GACTGAACTTAGCCGCAAATCATGTATACCCTCATCTATTTCAGC-TT-GGAACTCTTTACCAAACG-AGCTCATAGATATTGCTACAGTATCGACTTCTAAATTCTAA---------ATCTAGAATAAAGGCCTATCTTCCAGAAGTAGTT-A-A-TC-CAC-CTTCTTA-CTATAATGA--TGGTCACAGATATATA-TAT-CTG-C----TATGCAAGCACGACTGCGA-ACCAAATGTAGCAACTTGA--------ACCTTAACCTTAATCATCT-ACGCGATGAACCTTGTTTTA
gi|2 : TTTT--AGGAA-CCAGAGAATCGTTTTATTTGACTCTACT-AGAAATGTTCATCCGTTAAATGCAGAGCTTCTT--TTATTTGCAAAGACTGTACTTTCCGTTG---ATGACAA-ATTGTTGTTTTCACAGCGGTTTAC--------------AACAAGTCGTTTCAAAGAGTCCTAA-A-TGAC--AGCTCATTGTCAC-A---CAAGAAATTTAT-ATTTTGCCGGTTATATTTAAAACA-AA--TG---TATTTTAAATAGTT--TTTAAAT---CCAATTTCTTGACTAAACAGACA-A-TT----AATCTA-TCTTATA-TCTTATCTTTCTGCTggaaccagagaatcgttttatttgactctactagaaatgttcatccgttaaatgcagagcttcttttatttgcaaagactgtactttccgttgatgacaaattgttgttttcacagcggtttacaacaagtcgtttcaaagagtcctaaatgacagctcattgtcacacaagaaatttatattttgccggttatatttaaaacaaatgtattttaaatagtttttaaatccaatttcttgactaaacagacaattaatctatcttatatcttatctttctgct
gi|20 : gactgaacttagccgcaaatcatgtataccctcatctatttcagcttggaactctttaccaaacgagctcatagatattgctacagtatcgacttctaaattctaaatctagaataaaggcctatcttccagaagtagttaatccaccttcttactataatgatggtcacagatatatatatctgctatgcaagcacgactgcgaaccaaatgtagcaacttgaaccttaaccttaatcatctacgcgatgaaccttg---TGTATTGT-AACATTCTTGAT-GGT--CGTTTTCA-ATA----GC-ATTGTCAATTGAATTGTGATTGATGAA----TTA-TA-CAGGAAACGTCGAATCCAA-GTTCAGAAAA
gi|21 : GAGAAC---GCAACACAAATTTATGTTAATGTACAAAGC-A-TCAAATAATATGGTCCCT---TCCTATA
gi|23 : aaagactgCTAA---TGAGAGAACCTGTGGCCTGAGCC--TTTTCTATAACTATATG-AT--TTATAT-----GC---AAAATATGTTTataagcgacttgattccttc
gi|24 : TA-TA-AGAAAAGAGTCGATTCTAA-GTTGACATAAATTGAAGCCCCGCCC-ATTTACTtacaattattgtat
gi|25 : CCAACCC-ATTTACTGTA--TACATGCATACCTATATTG---GCAATAAAATACG-ATAAACCActgca
gi|26 : TGTAATCCAGTCC-ATTTGCTGGA--TGTATGTATATTTAC--TG---GCCATAAAATATGTTTAac
gi|27 : TGTGGCCCGACCCCATTT----------CATG-ATA----TATTG---A-AATAAAATATGTTTAAACTA
gi|28 : AGCTTCTT--TTATTTGGAATTACTGTACTTTCCGTTGGCCGTGAAAATATTaaa
gi|3 : -------TTTAAA---------ATCTAGTATAAAGAC-TATCTTTCAGAAGTA-AT-A-A--------CCTTTCA-TTTTATTGAGTTGGTCTAAG--ATATAATATATTGTC----TATGCATGCAATATTGTGA-AAAAAA-GTAGTAA-------A--ATGAC-TTTACCATAATCATCTTACA-GATGAACCTTTTTGACCCTGATT-ATATTATATAGACTATA--T-AT--TT-C--TT-TTAGCTGAAATACTTTTT--AGGGA-CTAGATAACCGTCTTATCTAACTCGACTGAGGAGTTT-----CATTTAATTCTGAGTTTCTT--TTATTTTGAAATACTGCACTTTCTGTTG---ATTACAATATAGTTGTCTTCAAAGCGGTTCTTGAAAACATAAAAACAAGCAGTGGTTTCAAATAGTTTTGA-AAT--T--G--TCATTG--AA-A---CAAACTACACATT--TTTGCCGCTTATAT--------------G---TATCATAACTA--------AA------CA-------GACTATATAGACA-T-TA----AGCCTA-ACTG------TTGTCATTCTACAAGTCTGTCTTACTGAAG-TAAGT-T---TTCAAC--T--T-T-AGATG--TTTCT---T--CTTCT--T-T---TT--CCATTCGTC--T--TG--TT----CTTCT
gi|4 : AAATG-ACATTGATGTA-AAAGCTGCTC--ATAATATGACCCCTACATATTATATACCACACCTTAACCCTTCT-CC-TGAAGACGAAAACATGTACAATATTCTTTACGAAATAATACTGCTATAAACAGTCCA-TCACAGGGACTTAAGTGAAC-GCAGGTCATGCATACCCTTAACAATTCCAGC-TT-G-AGCTCGTTACCTAATGCAG-TCAGAAACATAGTTACAGTATCGACTT-----TTTTAG---------ATCTAGCATAAAGGCTTATCTTCCAGAAGAA-GC-A-AGTCTC-C-CTTCTTC-TTATATTG---TTGCCACAG--ATGCG-TAT-CGG-CCTTGTATGTATGTAAGCTTACGACACAAAATGTAGCAATTTGAGCA--ATGACTTTTATCTCAATCACCT-GAGAAACGATCCCTTTTGTACATG-CT-GAAATCCGTAGTATAAACTT-ATCATTAC--TTGTTAGTTGCAATA-ATTTT--AGG-A-CC-------CGTTTTATATAACTCGACT-AG
gi|5 : CTGATAACAATTCTGGAATTATATATTTTGCTTTATAGCGAAGTTGCAAGAACAGTAATTGGTACTACCCGATCG----------CT----TATGTAGGGAGTAAGGTTACGTCTCACATGCAGAGATGAGAATACTGCA-CACAAACT-ATGT--ATGTAAAAAGTTACTC--ATGATATGTTTTAT---TCTTATATGTTA-----------TTCTTATATGTTAGAGAAAAA--TTAACACATCATGGAATACATACTAATAAAATCGATATTCCAAT--------------TAAGCCGCTTGGCTTGTATAGGATCATCTATTTTCGCTTT-G-ATGTAGTTGCCTGATG-GGATCAGAGACACTGTTTAAGTATCGAC-------TTTTAAAACGGAAATATCTAGATTTAAGGCCTATCTGC---AAGCA-TT-ATA-TC-C-C-CAATTTGTCTAAAGCGT--TGGTCACAG--ATACA-TAT-CTG-
gi|6 : aTG-TT-AAATTCTATAGAAGATAC-TGATAGTTAAA-TT-TTAACTGCAATA-TTTTTCTAGGAAACCGGAGAATCGTCTTTCTCAACTCGACT-AAAGAGTTTCACCCATTAAATTCTGAACTTCTTTGTCGTCTGCAAAG----------CGGTTC---ACGAATACATTGT------------------CAAGTATA-TAAAACAATCAGTCGCTACAAACAGTCTTAACAGTTATTGGATTGATTGTCACTGGTCTACGTAACAC-TT-TTTTGCCGATTATATTTAAGTTA-TA--TG---CATTATACA-------TTGAAAT---ATGTGTACCTGAATAAACAAACA-GTTA----AACCTA-TCTGCTG-TCTTTTCTTCCTGCTAGACTGTCTAACTGTTGTTCATTCT---TTCTCCAGTTAT-C-TGTT---TTTCT---C--TTCAT-------------TTTCCATTAATCTTG--TC----CTTCTT
gi|7 : ttAAACATAA--TGAAATATC--AATTAATGGATTGAATC---CTCAATACTTAACAAAGCAAACACA-TACTATAACCTA-TCTGCTAATCTGTTCGTT-TACCAGTCT------------TTTATTCT---TTCT-C--CTAT-C-CATTGACTTTCCAGCT--GTTGT--T-T---TTGTCTTTC-GTT--TT-TA--TT----CTTTTTATT------------CACAGCATGTGTT------A-TA-C-AATGC-G-T---TTAA---CGGATGATAGATAATGTTGAT--GAAACGTGC--C-ATACGTAGCCAGTGTCAAC--ATTTGTGTTTGTAAAA----TTG-TA-AGGAAAATGCCAAATCGTA-GTT-AG-GAACTGCTGGTCAAACTC-ta
gi|8 : TTTCACCCATCCATTTCCGAGCTTCCT--ATATTTAAAAAGATTTCACTTTCCAGTG---AT-AAAATTTCGTTGTATTCACAGCTGTTCATGAGTATAT---AATAACAAGGCGTTTATAAGAGTCTTAA-AATAGC--TG-TCAGTGTCAA-G---CAAGAAATATCTTATTTTTCCGGTCATATCTCAGTTA-AA--TG---TATTATAAGTTGTT--TCGAAATAAAAAAAATAAC-GTCTAAACAAACA-A-T------------TCTGCTA-TCATGCCTTTCTGGAAGGCTTCATTAATATCGCTTATTAT---TTCT-C--TTAT-T-GG--------CT---T--CTTTT--C-T---TT--CTTttgataaat
gi|9 : agTCATAT---AAACA-AACATG---TGTCATTCTTTGTT--TTAAAAT---CTAAGTTCCTGAATAAACAAACA-T-TT----AACCTAGTAT-CTA-CCTTGTCATTTTACTAGAC-ATCTTACTGTCGTTCATTATTACTTCTGC--T------AGCTG--TTTCT---T--TATCT--T-C---TT--CT----GTT--TC-TA--TT----TTTCCTGTA------------T----------TTATGTTAA-TA-T-GA-ACAA-TCCCTGTA---TGCATTGT-GACAATGT-------T--CAT------AT-CGTATGCATTGTCAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): GTATTCAAGTTAATATGAACATTCCTTGTGTGAATTGTGTTACAATTGTTCAAACTATAGCAGATTACATTATGTCATATCAG
Unaligned ( gi|29 ): TGGTTGGTTGGAAATAACATATGTTGTAACTAA