lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22 3333333333333333333333 1111 1 1 11 1 1 11 4444444 22 222222222 1 1 22 2222222222 111111 11 44444 2222222 11 1111111 6666666666666 222222 11 1 11 777777
lowQualScore : 2 6666 44 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 0000000000000000000000 0 6 9999 5 7 2 5 88 6 5 7 55 5 1 1 1 999999999 0 44 1 7777777 3 00 0 6 8 3 666666666 2 6 6 6 5 11 6 5555555555 1 777777 8 0 5 5 66 222 5 33333 1 5 5 0 1 1 4 1111111 11 8888888 3 9 6 8 0000000000000 7 333333 88 2 33 666666 2
lowQualScore : . .... .. ..................................................................................................................... .. ...................... . . .... . . . . .. . . . .. . . . . ......... . .. . ....... . .. . . . . ......... . . . . . .. . .......... . ...... . . . . .. ... . ..... . . . . . . . ....... .. ....... . . . . ............. . ...... .. . .. ...... .
lowQualScore : 7 5555 22 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 00 4444444444444444444444 9 0 1111 0 0 6 5 66 7 1 1 44 7 4 4 0 888888888 8 22 2 5555555 5 00 8 6 0 8 222222222 5 0 0 0 0 00 0 8888888888 0 333333 4 3 7 7 77 666 7 33333 1 7 7 3 0 8 0 7777777 88 2222222 2 3 7 3 7777777777777 0 000000 33 0 00 777777 5
consensus : NAATACAATGTGTNAACAAAACA----TTGGTGA--ACAATAATAGAA-A--G--AT-GG------AA-TAACA--A--AAAGCAATAAGAAC-------G-AA-------TGC----TTATGA---A--GTTCTTC-------T---A---GTCGTAC--TATAAATTNCACATTCGTGGCAAAA-GTAAACTAATTTATACATAAATATGTGAAAATAAATTAATGATAATGAAAANAGAAAGATATGATTACAACGGT-G-TT-TTACTGATTGATACATACGTGAT-AATTTTT---TAAANTAACC-GTGAATTTGAATGAA-AATTAGAAA--TAAATGTTAGGGTGACACAGGGGTGGAGGGGGAAGGTGACNNNNNNNNNNNNNNAGGGGTAGAGGGGGGACCGGNA---GCGACGTACTA-TATACTCTCAACAATA-T-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTCGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCC-AAAGAGA--A--NAAT----ATTAAGGTTTATATT------GTC--AGACAGTGCGCTGAAAA-CACTTGNCTCGCGAC
Reference ( gi|2 ) : GAATACAATGTGTAAACAAAACA----TTGGTGA--ACAATAATAGAACA--G--ATCAGTTCTTTAA-TAACAG-A--AAAGCAATAAGAAC-------G-AA-------TGC----TTTTGA---A--ATTCTTC-------T---A---GTCGTATA-TATAAATGATACATTCGTAACAAAAAGTAAATTATTTTATACATAAACAGGTTAACATAATTTAGTGGTAATGAAAAGAGAAAGGTATGGTTACAATAGT-G-TT-TTACTGATTGATATATACTTGAT-GATTTTTTTCTAAAATAACC-TTGAATTTGAAAGAA-AACTAGCAA--TAATTGTTAGGGTTACACAGAAGTAGAGGGGGAGGGGGACCTGGTTGGGGGGGGAGGGGGGGGGGGGGGTTCGGGA---GCGATA-ACTA-TATACTATCAACAATA-T-A-GATAGGTCTACT-TGAATT-TGTTTTGTG-TTCTT-TATAAAAGTATGTA-------CTGCATCGAAAATTGGAATATTTCTCTC-AAAGTCCAAATGTTGTTCTCC-AATGAGA--G--GAGT----ATTAATGTTTATATT------GTC--AGCCAGTGCGTTGAAAA------GCCTCGCGAC
gi|18 : AACACAATGTGTAAACAAAACATTTTTTGGTG---ACGATTATAGAAAAAGG--A---------TAA-TAAC---G--AAAGC-ATAA
gi|5 : gtttaaatatatcttatttcggaatatatatATACAATGAGTAAACAAA-CA----TTGGTGA--ACAA----------------------CT-------ATAG-A--AAAGGGATAAGAAC-------G-AAAGTATAATGC----TTATAG---A--G--CTTCG------T---A---GTCGT-TC-TATAAAT--TGCA--CATGGCAAAATGGAAGTTAATTTGTACATAGATATCTGAAAATTAATAAGTGACAATGAAAAGCGAAAGATATGATTTCAATGGT-A-TT-TAACTGACGGTTTCTTATGTGGTAGATTTTT---TAAAATAACT-GTGTGTTTG-AAGAA-AAC-----------TTGTTAGGGTAACACAGGGGTAGAGGGGtgct
gi|1 : taaacatattttatttatatATACAATATGTTAACAAAACA----TGAGTGC--AAAATAATTGAA-------ATTGG-------A-TAAGACCA--AAAGCA-TA----C------------------TGT----CTATGGC--ATTATTCTCC-------T---T---GTCATAT--TACAAATTGCACATCTATGGCAAAAAGTAA-----TCCATAGATACATATGTGAAATTAAATTAATGG----GAAAA---AAAGATATGATTACAATGGT-GGTTATTACTGATTGATACAG--TTGCT-TACTT------AAACTAATC-ATGAATTTGAATTAA-AACCAGAAA--TAAATGCTGGAATAAAACAAAGGTGGATGGGAAAGGTGACagaaatcgacaacgatatacactcaacaatataaacagtttcccttaagcaattgtat
gi|13 : aaaacatactagttgatttctcaatacatataggcttATACAAAGTGTAAACAAAACA----TTGGTGA--ACAACAATAGAAAA--GGGATAAG------AACTAATTT-A--AAAGCA-TAA----------------------TGT----TTGTGG---T--GTTCTTC-------TCCAA---GTCATAC--TATAAATAACACAT----GGCAAAA-GTAAACTAATTTATACATAAATATGTGAAAATAAATTAACGATAAatattatatactttcaacaatgtaagaaatatctacttgaaccttttcgtgtttttttatcaaagtttgaactgtatccgaaattgaaatatttgtctcaaatattgttttccaatgagaatgcaatttaggtttatattgtccaagtcagagaatgaaaattagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|11 : ttaaacatcttatttctgaatttatATGCAATGTATAAACTAAACA----CTGGTGA--ACAATAATGTAACG--G--
gi|20 : aattctgtataaatATACAATGTGTCAATAAAACA----TTGATGA--AAAATAAT-------------CAGT------------AG-A--AAGGGAATAAGAACGAAAACAG-AA-------TGT----TTGTGA---A--ATTCggataagacgatatgtatgctatgaattctacatggcaaaacgtatactaatttatacataaatacgtgacaataaataagtgataatgaaaagagaaagacatgattgcaatgatgtcacataaattgttacatac
gi|22 : tatttatatatACACAATGTGTAAACAAAACA----CTGGTGA--ATAATA
gi|21 : tactatatgaaacatattttatacctgaatatatatataaatatatacacacATACAATGTGGCAACAAAACA----TTGATGT--ACAATAATATAA
gi|3 : attaaaaagcatgttagtttaaacatagtttatgcttcattaatgcTACAACGTGTTAACAAAACA----TCATTAA--CCAACAGTA---TA--C--ATCGG-------A-TAAAAA-ACGAAAGCATTA-----------------------TGC----TTATGA---A--ATTCTTC-------T---CCTTGTCATA-A-TATAAATTACACATTTATGGCAAAATGTA-----TTTTATTCATAAATATGTGAAATTAAATTAATGCTAGCGATATTAGAAAGATGTGATAACAAATGTCG-TTATTTCTGATTAATACATACGTGAC-AGTTTCTT--TAAATTAACCATAAAATTTGAATGAACAATTAGAAA--TACATGTTAGGGTGACACAGAGGTGAAGaaaa
gi|6 : TACAATGTGTAAACAAAACA----TTGGTGG--ACAATACTAGAA-A--A--ATGGA-----TAA-TAAC---G--AAAGC-AT---AAT-------T-AA-------TGC----CAATGA---A--GTTCTTCTCTTATTT---A---GTCTTAC--TATAAATATTACA--CATAA---------------TTTAT--ATAAATATGTGAAAATAAAT------CAATTAAGAGAGAAAGATACGATTACAA---T-G-CT-GTA-TAATTG---TACACGTGAT-AAATTTTGTTT-AAATAACT-ATGAATTTGAATAAT-AATTAGAAA--TAAATGTaaaaaagcagactactatattatcaacaatattaggtatttctactttaatcatttcgtattctttacgaaactatttgcttcatcgaaaattctattatttgcctcaaagtcaaaatgtcgttctcaaaagagaatggacttaaggtttattttgtat
gi|12 : ctttaaacatatttcatttctgaatacatgTACAATGTGTTAACAAAACA----TTGGTGA--ACAATAATAG---A--G--A--------------AA-GG-A--TAAG-AATGAAAAC-------ATAA-------TGC----TTATAA---A--GTTCTTC-------TCCTA---GT--TAAACTATAA-TG-TAC--CCGTGGCAAAA-GTAAACTAATTCATATATAAATACGGGAAAATAAATTAGCATAAAAGAATAGAGAA
gi|8 : catagtttatttctggatatttgTACAATGTATTACCCAAACA----CTGGTGA--ACAATACTAGAGAAAGG--ATTAG------GA-TGA--------AAGCA-TAA----------------------TGC----ATATAA---A--ATTCT-------------A---GTTGTAC--TATAAATTGCACATTTGTTGCAAATTGTAAACTGATTTATACATAAATATATGAAAGTTAATTA-TTATAGTGAAAATAGAAATCCATGATTACAA
gi|7 : aaacatattttatttctcagtaactatatTGCAATATATATATACAATG----TTGTTAATGACAGTGAT-GTACA--A--A----------AA-TAAC---A--AAAG-GATATGAAT-------G-AA-------AGCATAATGCTGAAGGA--AATCTTCTCA----T---A---GTTATATA-TACAAATTATATATTTGTGGTAAATAATAAACTGATTTATCAATAAGTATATGAAAATAAATTAATGATAGTGAAAATAGAA--GTGT--TTAT--CACT-G-TT-TTA
gi|11 : taaacatatgttatttGTATGCTATGAATTCTACAT----GGCAAAACGTATACTAATTTATACATAAATACGTGACAATAAATAAGTGATAATGAAAAGAGAAAGACATGATTGCAATGAT-G-TC-ACATAAATTGTTACATACta
gi|23 : aattctgtataaatatgcaatgtataaactaaacactggtgaacaataatgtaacggggataagacgatatTTTTATACATAAATGTGTGAAAATAAATCGATGATAATGAAAATATAAAGATATTATTACAA-AGT-GTTT-TTGCTGATGGAT
gi|10 : GAATATGAAAGAA-AATTATAAAATTAA-TGTTA-GGTGACACAGGGGTAGAGGGGGgca
gi|10 : AGGGGTAGAGGGGGGACCAACA---ACAATATAC-A-TGTACTCTTAACAACA-T-A-TATAGGTCTACT-TGAACCATG--TTGTG-TTCCT-------------TA-------CTGCATGAAAGATTTGAATATTTGTATC--AAGTCAAAATGTTGTTGTCCAAATGGTA-----AAAT----ATTAAGGTTTATATgaccaacaacaatatacatgtactcttaacaacatatataggtctacttgaaccatgttgtgttccttactgcatgaaagatttgaatatttgtatcaagtcaaaatgttgttgtccaaatggtaaaatattaaggtttatatct
gi|1 : gaatatgaaagaaaattataaaattaatgttaggtgacacGGGAAAGGTGACATATTA-TATACTTTCAACAATG-T-AAGAAATATCTACT-TGAACC-T-TTTCGTGTTTTTT-TATCAAAGTTTGAA-------CTGTATCCGAAATTGAAATATTTGTCT--------CAAATATTGTTTTCC-AATGAGAATG--CA------ATTTAGGTTTATATT------GTCCAAGTCAGAGAA-TGAAAA------ct
gi|14 : aaaacatactagttgatttctcaatacatataggcttatacaatatgttaacaaaacatgagtgcaaaataattgaaattggataagaccaaaagcatactgtctatggcattattctccttgtcatattacaaattgcacatctatggcaaaaagtaatccatagatacatatgtgaaattaaattaatgggaaaaaaagatatgattacaatggtggttattactgattgatacagttgcttacttaaactaatcatgaatttgaattaaaaccagaaataaatgctggaataaaacaaaggtggatA---GCGACG-AC----ATACTCTCGACAATA-T-A-AATAGGTTTATT-TGAACC-T-TTCTGTG-CTCTT-TATAAAAGTATGAA-------CTGCATCGAAAATTGGAATATTTGTCTCAAAAGTCAAAATATTGTTCTCC-ACAGACA--A--TAGT----ATCGAGGTTTATATT------GTttagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|4 : gataaaggtgcagtagagaa-ACGA-TATAGTCTCAACAATA-TCA-AATGTGTCTACC-TGAAGT--GTTTAGTG-TTCTT-TATAAAAGTATGAA-------CTGCATCGA----T----TATTTGTCTA-AAAGTCAAAATGTTGTTCTGC-AAAGAGA--A--AAAA----ATTAATGTTTATATTATGCAAGTC--AGACAGTGCACTGAAAAGCACTTGCCTCACGACg
gi|3 : aggtaaact-ACTACTATATTATCAACAATATT-A-GGTATTTCTACT-TTAA-T-CATTTCGTA-TTCTT-TACGAAACTATTTG-------CTTCATCGAAAATTCTATTATTTGCCTC-AAAGTCAAAATGTCGTTCTCA-AAAGAGAATG--GA------CTTAAGGTTTATTTT------GTtctatatttattacagcgaaaacaaagtgctatcagttttctatacacgagcgcagaggaggctcaaccgtatttttcaaaaacacgattttgattgagagatctacaactcgtacggagtctcgcaagctggacttgcttctttaccaaagttaaaatacttcgacactttacttt
gi|17 : tacaacgtgttaacaaaacatcattaaccaacagtatacatcggataaaaaacgaaagcattatgcttatgaaattcttctccttgtcataatataaattacacatttatggcaaaatgtattttattcataaatatgtgaaattaaattaatgctagcgatattagaaagatgtgataacaaatgtcgttatttctgattaatacatacgtgacagtttctttaaattaaccataaaatttgaatgaacaattagaaatacatgttagggtgacacagaggtgaagaaaaaagcagA-TATACTCTCCGCAATA-T-GTGATAGCTCAATTCTAAAC---ATTTTGTG-TTCTT-TATAAAat
gi|9 : atgaatttgataagaaaactgaaaatcaatgtgacacatgggttgaaaagttgaatatgTATCTGCAATA-T-A---T-GATCTACT-TGAAAT--GTTTCGTG-TTCTTGTCAAAAAATGTGTAAACTCTTCTGCATGGAAAATTCGAATGTT-----C-AA--TTTA----TT-TTCTCT-AAAAAGA--AATGAATCAAGATAAATGTTTTTTTA------ATC--AAACAGTGCGTTGATAATCACTTGACTTGCGACtgaag
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AAAGCACTTGCCTTGCAACTCTATATTTTTTTAATGAATACAGGAAAAAAAATTAAATGCTGTGCGTGTTCCATAACACAACGCAGACACAAGAGAGACACAACCAGTTAACACTTGAAAAAAAAAATGATTGAGATGACTAGAACTTCGGTTCGGTGTTT
Unaligned ( gi|16 ): GTGATAAAACGAAAGCACAATGCTTAAGAAGTTCTTCTCCTAATCGTGCTATAAGTTACACAGGGCATAAGTGAACTAATTTATAAGTAAATATGTGAAATATACGAGTATAATGGTGTTAAACTGATTGTTACCTATGTG
Unaligned ( gi|19 ): ATACATAAATGGTTATCACTGTTTCATACAGATGTGACAGTTTCTTTAAAATAAAAATAGAAATAAATGTTGGGGTGACACAAATTTTAATAACAAA
Unaligned ( gi|24 ): AACATATTTTATTTTTTAATATATATGCAATGTGCATTTGTGAACTATACTAGAAAAGGGAAAAGAATTAAT
Unaligned ( gi|25 ): TCTAAAATTTGATCTTGGTTGAGAGAACTACATTTAGTTCGGAATCTCGCATGCTGAATTTAAATACTTCT
Unaligned ( gi|26 ): CGCATGGTCGTAGGAGCGTTTCAATTATTATTTGGGGGAGGGGGTGCTCCTACGCCTATGTT
Unaligned ( gi|27 ): AATGAATATTTTATACATGGCAGGAATATATTGTTACAATACTTATTCACA
Unaligned ( gi|28 ): TACACACGGTCGTAGGAGCGTTTCAATTACAATTATTTGGGA
Unaligned ( gi|29 ): TAACATTTTTATTTCTCAGTATATACATGTATATATA
Unaligned ( gi|30 ): ACGAGAGCATAACGCTCATGAAATTCTTCTCCTTG
Alignments
lowQualScore : 999999999999999999999999999999999999999999999999 111111111 33333333333 22222 111 11 111111 111 1111111 11111111111111 11111111 22 1111 2222 1111111 1 11 1111111111 111111 11 1 11
lowQualScore : 2 1 6666 1 6666 3 444444444444444444444444444444444444444444444444 1 7777 3 222222222 0 3 22222222222 1 7 55 1 44444 777 2 1 3 44 3 0 4 00 111111 3 8 333 6666666 1 666 5 5 9 5 5 0 3 2 8 4 44444444444444 33333333 6 11 8 4444 1 4 2222 2 5 5 0 0 3 8888888 0 44 9999999999 0 999999 33 3 444 0 66 1
lowQualScore : . . .... . .... . ................................................ . .... . ......... . . ........... . . .. . ..... ... . . . .. . . . .. ...... . . ... ....... . ... . . . . . . . . . . .............. ........ . .. . .... . . .... . . . . . . ....... . .. .......... . ...... .. . ... . .. .
lowQualScore : 9 0 1111 0 5555 1 888888888888888888888888888888888888888888888888 1 1111 3 999999999 4 6 88888888888 8 3 00 0 77777 444 2 8 3 66 3 4 9 99 666666 6 4 333 2222222 0 888 0 0 9 0 0 2 0 2 0 0 00000000000000 88888888 7 00 3 1111 9 4 4444 2 0 0 1 3 0 6666666 1 11 3333333333 7 222222 88 5 888 0 77 0
consensus : NAATACAATGT-GTNAACAAAACA----TTGGTGAACAATAA----TAGAA-AAA--GG------G--ATAA--CA-A--A---AAGCAAT--AAGA-CG-AATGCTTA----TGA-A--G------TTCTTC-TC------A---GTCGTAC-TATAAAT--TACACATTCGTGGCAAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTACAATGGT-G-TT-TTACTGATTGATACATACGTGATA-A-TTT-T-T---TAAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGCGACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACTATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAAN--AGN----ATTAAGGTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
Reference ( family-5905 ) : NAATACAATGT-GTNAACAAAACA----TTGGTGAACAATAA----TAGAA-AGAT-GG------A--ATAA--CA-A--A---AAGCAAT--AAGAACG-AATGCTTA----TGA-A--G------TTCTTC-T-------A---GTCGTAC-TATAAAT--TNCACATTCGTGGCAAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAANAGAAAGATATGATTACAACGGT-G-TT-TTACTGATTGATACATACGTGATA-A-TTT-T-T---TAAANTAACCGT-GAATTTGA-ATGAA-AATTA-GAAATAAATGTTAGGGTGACACAGGGGTGGAGGGG-GAAGGTGACNNNNNNNNNNNNNNAGGGGTAGAGGGGGGACCGGNA--GC-GACGTACTATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTCGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAAN--AAT----ATTAAGGTTTATATT------GTC--AGACAGTGCGCTGA-AAA-CACTTGNCTCGCGAC
gi|1 : ATACAATAT-GTTAACAAAACA----TGAGTGCAAAATAA----TTGAA-A--T-TG------G--ATAAGACC-A--A---AAGCA-T--A----C----TGTCTA----TGGCATTA------TTCTCC-T-------T---GTCATAT-TACAAAT--TGCACATCTATGGCAAA-A-----AGTAATCCATAGATACATATGTGAAA-TTA--AAT-TAATGG----GAAAA---AAAGATATGATTACAATGGT-GGTTATTACTGATTGATACA---GT--TG-C-TTA-C-T---TAAACTAATCAT-GAATTTGA-ATTAA-AACCA-GAAATAAATGCTGGAATAAAACAAAGGTGGATGGG-AAAGGTGAC
gi|1 : aaaacatactagttgatttctcaatacatataggcttAAGGTGGATGGGAAAGGT-GACATATTATATACTTTCAACAATGT-AAGAAATATCTACT-TGAACC-T-TTTCGTGTTTTTT-TATCAAAGTTTGAA-------CTGTATCCGAAATTGAAATATTTGTCTC--------AAATATTGTTTTCCAATGAGAAT--GCA----ATTTAGGTTTATATT------GTCCAAGTCAGAG-AATGA-AAA-atattatatactttcaacaatgtaagaaatatctacttgaaccttttcgtgtttttttatcaaagtttgaactgtatccgaaattgaaatatttgtctcaaatattgttttccaatgagaatgcaatttaggtttatattgtccaagtcagagaatgaaaattagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : aaaacatactagttgatttctcaatacatataggcttatacaatatgttaacaaaacatgagtgcaaaataattgaaattggataagaccaaaagcatactgtctatggcattattctccttgtcatattacaaattgcacatctatggcaaaaagtaatccatagatacatatgtgaaattaaattaatgggaaaaaaagatatgattacaatggtggttattactgattgatacagttgcttacttaaactaatcatgaatttgaattaaaaccagaaataaatgctggaataaaaca-GAATATGA-AAGAA-AATTATAAAATTAATGTTAGG-TGACACAGGGGTAGAGGGG-GGAttagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : AGGGGTAGAGGGGGGACCAACA--AC-AATATAC-ATGTACTCTTAACAACAT-A-TATAGGTCTACT-TGAACCATGTT--GTG-TTCCT-T------------A-------CTGCATGAAAGATTTGAATATTTGTATC--AAGTCAAAATGTTGTTGTCCAAATGGTAA--AAT----ATTAAGGTTTATATccaacaacaatatacatgtactcttaacaacatatataggtctacttgaaccatgttgtgttccttactgcatgaaagatttgaatatttgtatcaagtcaaaatgttgttgtccaaatggtaaaatattaaggtttatatct
gi|11 : gaatatgaaagaaaattataaaattaatgttaggtgacacATGCAATGT-ATAAACTAAACA----CTGGTGAACAATAA----TG---------------------TAA--CG----------GGGAT--AAGA-CG-A-----TA----TG-------------------T-------A-------TGC-TATGAAT--TCTACAT----GGCAAA-ACGTATACTAATTTATACATAAATACGTGACA-ATA--AAT-AAGTGATAATGAAAAGAGAAAGACATGATTGCAATGAT-G-TC-ACATAAATTGTTACATACct
gi|12 : aattctgtataaatTACAATGT-GTTAACAAAACA----TTGGTGAACAATAA----TAGAG-AAA---G------G--ATAA--------------G-AAT--GAAAACATAATGCTTA----TAA-A--G------TTCTTC-TCCT----A---GTTAAAC-TATAA----TGTAC--CCGTGGCAAA-A-GTAAACTAATTCATATATAAATACGGGAAA-ATA--AAT-TAGC-ATAA-AAGAATAGAGA
gi|13 : catagtttatttctggatatttgATACAAAGT-GTAAACAAAACA----TTGGTGAACAACAA----TAGAA-AA---GG------G--ATAA--------G---AACTAATTTAAAAGCATAATGTTTG----TGG-T--G------TTCTTC-TCCA----A---GTCATAC-TATAAAT--AACACAT----GGCAAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAACGATAAa
gi|14 : ttaaacatcttatttctgaatttatGAAA--GC-GACG----ACATACTCTCGACAATAT-A-AATAGGTTTATT-TGAACC-T-TTCTGTG-CTCTT-TATAAAAGTATGAA-------CTGCATCGAAAATTGGAATATTTGTCTCAAAAGTCAAAATATTGTTCTCCACAGACAAT--AGT----ATCGAGGTTTATATT------GT
gi|16 : gataaaggtgcagtaga--A---AAACGA---AAGCAC--AATGCTTA----AGA-A--G------TTCTTC-TCCT----A---ATCGTGC-TATAAGT--TACACA---G-GGCATA-A-GTGAACTAATTTATAAGTAAATATGTGAAATATACGAGTATAATGGTg
gi|17 : gtgatT-GAATTTGATAAGAA-AACTG-AAAATCAATGT------GACACATGGGTTGAgttaaactgattgttacctatgtg
gi|17 : aATATACTCTCCGCAATAT-GTGATAGCTCAATTCTAAAC---ATTTTGTG-TTCTT-TATAAAaaagttgaatatgatatactctccgcaatatgtgatagctcaattctaaacattttgtgttctttataaatgaag
gi|18 : atgaatttgataagaaaactgaaaatcaatgtgacacatgggttgaaaagttgaatatgAACACAATGT-GTAAACAAAACATTTTTTGGTG-ACGATTA----TAGAA-AAA---G------G--ATAA--TA-ACGA---AAGC-AT--AAtgaag
gi|19 : gtttaaatatatcttatttcggaatatatatAATGGT---TA-TCACTGTTTCATACAGATGTGACA-G-TTTCT-T---TAAAATAA------------------A-AAT-A-GAAATAAATGTTGGGGTGACACAtgct
gi|2 : atacataAATACAATGT-GTAAACAAAACA----TTGGTGAACAATAA----TAGAACAGATCAGTTCTTTA--ATAA--CAGA--A---AAGCAAT--AAGAACG-AATGCTTT----TGA-A--A------TTCTTC-T-------A---GTCGTATATATAAAT--GATACATTCGTAACAAA-AAGTAAATTATTTTATACATAAACAGGTTAAC-ATA--ATT-TAGTGGTAATGAAAAGAGAAAGGTATGGTTACAATAGT-G-TT-TTACTGATTGATATATACTTGATG-A-TTT-T-TTTCTAAAATAACCTT-GAATTTGA-AAGAA-AACTA-GCAATAATTGTTAGGGTTACACAGAAGTAGAGGGG-GAGGGGGACCTGGTTGGGGGGGGAGGGGGGGGGGGGGGTTCGGGA--GC-GATA-ACTATATACTATCAACAATAT-A-GATAGGTCTACT-TGAATT-TGTTTTGTG-TTCTT-TATAAAAGTATGTA-------CTGCATCGAAAATTGGAATATTTCTCTC-AAAGTCCAAATGTTGTTCTCCAATGAGAGG--AGT----ATTAATGTTTATATT------GTC--AGCCAGTGCGTTGA-AAA------GCCTCGCGACaattttaataacaaa
gi|20 : gATACAATGT-GTCAATAAAACA----TTGATGAAAAATAATCAGTAGAA-AG---GG------A--ATAA--GA-ACGA---AAACA----------G-AATGTTTG----TGA-A--A------TTC
gi|21 : tatttatatatATACAATGT-GGCAACAAAACA----TTGATGTACAATAA----TATAA-AAA
gi|22 : attaaaaagcatgttagtttaaacatagtttatgcttcattaatgcACACAATGT-GTAAACAAAACA----CTGGTGAATAATAa
gi|23 : tactatatgaaacatattttatacctgaatatatatataaatatatacacacTTTATACATAAATGTGTGAAA-ATA--AAT-CGATGATAATGAAAATATAAAGATATTATTACAA-AGT-GTTT-TTGCTGATGGATGCA
gi|3 : tTACAACGT-GTTAACAAAACA----TCATTAACCAACAG----TATAC-A--T-CG------G--ATAA--AA-A--ACGAAAGCATT--A---------TGCTTA----TGA-A--A------TTCTTC-T-------CCTTGTCATAA-TATAAAT--TACACATTTATGGCAAA-ATGTA---T--TTTATTCATAAATATGTGAAA-TTA--AAT-TAATGCTAGCGATATTAGAAAGATGTGATAACAAATGTCG-TTATTTCTGATTAATACATACGTGACA-G-TTTCT-T---TAAATTAACCATAAAATTTGA-ATGAACAATTA-GAAATACATGTTAGGGTGACACAGAGGTGAAGAAA-AAAG
gi|3 : A--GCAGAC-TACTATAT--TATCAACAATATTA-GGTATTTCTACT-TTAATC--ATTTCGTA-TTCTT-TACGAAACTATTTG-------CTTCATCGAAAATTCTATTATTTGCCTC-AAAGTCAAAATGTCGTTCTCAAAAGAGAAT--GGA----CTTAAGGTTTATTTT------GTcagactactatattatcaacaatattaggtatttctactttaatcatttcgtattctttacgaaactatttgcttcatcgaaaattctattatttgcctcaaagtcaaaatgtcgttctcaaaagagaatggacttaaggtttattttgtat
gi|4 : tacaacgtgttaacaaaacatcattaaccaacagtatacatcggataaaaaacgaaagcattatgcttatgaaattcttctccttgtcataatataaattacacatttatggcaaaatgtattttattcataaatatgtgaaattaaattaatgctagcgatattagaaagatgtgataacaaatgtcgttatttctgattaatacatacgtgacagtttctttaaattaaccataaaatttgaatgaacaattagaaatacatgttagggtgacacagaggtgaagaaaaaTACGATATAGTCTCAACAATATCA-AATGTGTCTACC-TGAAG--TGTTTAGTG-TTCTT-TATAAAAGTATGAA-------CTGCATCGA----T----TATTTGTCTA-AAAGTCAAAATGTTGTTCTGCAAAGAGAAA--AAA----ATTAATGTTTATATTATGCAAGTC--AGACAGTGCACTGA-AAAGCACTTGCCTCACGACat
gi|5 : aggtaaacATACAATGA-GTAAACAAA-CA----TTGGTGAACAACTA----TAGAA-AA---GG------G--ATAA--GA-ACGA---AAGT-AT----------AATGCTTA----TAG-A--G--------CTTCGT-------A---GTCGTTC-TATAAAT--TGCACA----TGGCAAA-ATGGAAGTTAATTTGTACATAGATATCTGAAA-ATT--AAT-AAGTGACAATGAAAAGCGAAAGATATGATTTCAATGGT-A-TT-TAACTGACGGTTTCTTATGTGGTAGA-TTT-T-T---TAAAATAACTGT-GTGTTTGA-A-GAA-AACT----------TGTTAGGGTAACACAGGGGTAGAGGGGAGAAATCGACtctatatttattacagcgaaaacaaagtgctatcagttttctatacacgagcgcagaggaggctcaaccgtatttttcaaaaacacgattttgattgagagatctacaactcgtacggagtctcgcaagctggacttgcttctttaccaaagttaaaatacttcgacactttacttt
gi|5 : taaacatattttatttatatAGGGGTAGAGGGGAGA----AA--TC-GACA-ACGATATACACTCAACAATAT-A-AACAGTTTCCCT-TAAGCaacgatatacactcaacaatataaacagtttcccttaagcaattgtat
gi|6 : taaacatattttatttatatatacaatgagtaaacaaacattggtgaacaactatagaaaagggataagaacgaaagtataatgcttatagagcttcgtagtcgttctataaattgcacatggcaaaatggaagttaatttgtacatagatatctgaaaattaataagtgacaatgaaaagcgaaagatatgatttcaatggtatttaactgacggtttcttatgtggtagattttttaaaataactgtgtgtttgaagaaaacttgttagggtaacacTACAATGT-GTAAACAAAACA----TTGGTGGACAATAC----TAGAA-AAAT-GG------ATAATAA--CG-A--A---A-GCA-T--AA---TT-AATGCCAA----TGA-A--G------TTCTTC-TCTTATTTA---GTCTTAC-TATAAATATTACACAT--------------------AATTTATA--TAAATATGTGAAA-ATA--AAT-CAAT-----T-AAGAGAGAAAGATACGATTACAATGCT-G-T----A-TAATTG-TACA--CGTGATA-AATTT-TGT---TTAAATAACTAT-GAATTTGA-ATAAT-AATTA-GAAATAAATGTaattgtat
gi|7 : ctttaaacatatttcatttctgaatacatgATACAATGTTGTTAATGA--CA----GTGATGTACAA-------------------A------A--ATAA--CA-A--A---AGG--AT--ATGAATG-AAAGCATAATGCTGA-A--GGAAATCTTCTCA-T-------A---GTTATATATACAAAT--TATATATTTGTGGTAAATA-ATAAACTGATTTATCAATAAGTATATGAAA-ATA--AAT-TAATGATAGTGAAAATAGAA----GTGTTTATCAC--T-G-TT-TTA
gi|8 : taaacatatgttattttgcaatatatatTACAATGT-ATTACCCAAACA----CTGGTGAACAATAC----TAGAG-AAA--GG------A--TTAG--GATG--A---AAGCA-T--AA--------TGCATA----TAA-A--A------TTCT-----------A---GTTGTAC-TATAAAT--TGCACATTTGTTGCAAATT-GTAAACTGATTTATACATAAATATATGAAA-GTT--AAT-T-ATTATAGTGAAAATAGAAATCCATGATTACAAta
gi|9 : aaacatattttatttctcagtaactatatCAATAT-A---T-GATCTACT-TGAAA--TGTTTCGTG-TTCTTGTCAAAAAATGTGTAAACTCTTCTGCATGGAAAATTCGAATGTT------------CAATTTATT-TTCTCTAAAAAGAAATGAATCAAGATAAATGTTTTTTTA------ATC--AAACAGTGCGTTGATAAT-CACTTGACTTGCGAC
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAAGCACTTGCCTTGCAACTCTATATTTTTTTAATGAATACAGGAAAAAAAATTAAATGCTGTGCGTGTTCCATAACACAACGCAGACACAAGAGAGACACAACCAGTTAACACTTGAAAAAAAAAATGATTGAGATGACTAGAACTTCGGTTCGGTGTTT
Unaligned ( gi|24 ): AACATATTTTATTTTTTAATATATATGCAATGTGCATTTGTGAACTATACTAGAAAAGGGAAAAGAATTAAT
Unaligned ( gi|25 ): TCTAAAATTTGATCTTGGTTGAGAGAACTACATTTAGTTCGGAATCTCGCATGCTGAATTTAAATACTTCT
Unaligned ( gi|26 ): CGCATGGTCGTAGGAGCGTTTCAATTATTATTTGGGGGAGGGGGTGCTCCTACGCCTATGTT
Unaligned ( gi|27 ): AATGAATATTTTATACATGGCAGGAATATATTGTTACAATACTTATTCACA
Unaligned ( gi|28 ): TACACACGGTCGTAGGAGCGTTTCAATTACAATTATTTGGGA
Unaligned ( gi|29 ): TAACATTTTTATTTCTCAGTATATACATGTATATATA
Unaligned ( gi|30 ): ACGAGAGCATAACGCTCATGAAATTCTTCTCCTTG
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111111111111 000000000000000000000000000000000000 3333333333 2222 1 111 111 111 11 1111 2222 1111111 11 111111 111111 11 1 11
lowQualScore : 2 1 6666 1 3 3 5555555555555 111111111111111111111111111111111111 0 0 8888888888 1 7 55 7777 3 8 2 1 3 44 3 0 4 5 4 0 8 99 3 8 333 333 111 666 5 5 7 5 2 5 0 6 8 00 99 1 99 6 99999 4444 1 4 2222 2 5 5 0 0 3 8888888 6 44 1 1 666666 999999 33 1 7 0 66
lowQualScore : . . .... . . . ............. .................................... . . .......... . . .. .... . . . . . .. . . . . . . . .. . . ... ... ... ... . . . . . . . . . .. .. . .. . ..... .... . . .... . . . . . . ....... . .. . . ...... ...... .. . . . ..
lowQualScore : 9 0 1111 0 1 1 8888888888888 111111111111111111111111111111111111 1 1 5555555555 8 3 00 1111 6 2 2 8 3 66 3 4 7 5 0 1 9 99 6 4 333 555 777 888 0 0 6 0 2 0 2 0 0 22 55 4 22 7 88888 1111 9 4 4444 2 0 0 1 3 0 6666666 6 11 0 0 444444 222222 88 0 0 0 77
consensus : NAATACAATGT-GTNAACAAAACA----TTGGTGAACAATAAT-AG-AAAA----AGG-----GATAA--NA-ACG------A---AAGCA-TAA----C-A-ATGCTTATGAAGTTCTTCTC------A--GTCGTAC-TATAAAT--TACACATTCGTGGCAAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGATA-A-TTT-T-TT---AAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
Reference ( family-5905 ) : NAATACAATGT-GTNAACAAAACA----TTGGTGAACAATAAT-AG-AAAA----AGG-----GATAA--CA-A--------A---AAGCAATAAG-A-CGA-ATGCTTATGAAGTTCTTCTC------A--GTCGTAC-TATAAAT--TACACATTCGTGGCAAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGATA-A-TTT-T-TT---AAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACTATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
gi|1 : ATACAATAT-GTTAACAAAACA----TGAGTGCAAAATAAT-TG-AAAT-----TG-----GATAAGACC-A--------A---AAGCA-TA-----C----TGTCTATGGCATTATTCTC------CTTGTCATAT-TACAAAT--TGCACATCTATGGCAAA-A-----AGTAATCCATAGATACATATGTGAAA-TTA--AAT-TAATGG----GAAAA---AAAGATATGATTAC-AATGGTGGTTATTACTGATTGATACA---GT--TG-C-TTA-C-TT---AAACTAATCAT-GAATTTGA-ATTAA-AACCA-GAAATAAATGCTGGAATAAAACAAAGGTGGATGGG-AAAGGT-GAC
gi|1 : aaaacatactagttgatttctcaatacatataggcttAAGGTGGATGGGAAAGGT-GACATATTATATACTTTCAACAATGT-AAGAAATATCTACT-TGAACC-T-TTTCGTGTTTTTT-TATCAAAGTTTGAA-------CTGTATCCGAAATTGAAATATTTGTCTC--------AAATATTGTTTTCCAATGAGAATGCAATTTAG------GTTTATATT------GTCCAAGTCAGAGAA-TGA-AAA-atattatatactttcaacaatgtaagaaatatctacttgaaccttttcgtgtttttttatcaaagtttgaactgtatccgaaattgaaatatttgtctcaaatattgttttccaatgagaatgcaatttaggtttatattgtccaagtcagagaatgaaaattagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : aaaacatactagttgatttctcaatacatataggcttatacaatatgttaacaaaacatgagtgcaaaataattgaaattggataagaccaaaagcatactgtctatggcattattctccttgtcatattacaaattgcacatctatggcaaaaagtaatccatagatacatatgtgaaattaaattaatgggaaaaaaagatatgattacaatggtggttattactgattgatacagttgcttacttaaactaatcatgaatttgaattaaaaccagaaataaatgctggaataaaaca-GAATATGA-AAGAA-AATTATAAAATTAATGTTAGG-TGACACAGGGGTAGAGGGG-GGAttagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : AGGGGTAGAGGGGGGACCAACA--AC-AATATAC-ATGTACTCTTAACAACAT-A-TATAGGTCTACT-TGAACCATGTT--GTG-TTCCT-T------------A-------CTGCATGAAAGATTTGAATATTTGTATC--AAGTCAAAATGTTGTTGTCCAAATGGTAAAATATTAAG------GTTTATATccaacaacaatatacatgtactcttaacaacatatataggtctacttgaaccatgttgtgttccttactgcatgaaagatttgaatatttgtatcaagtcaaaatgttgttgtccaaatggtaaaatattaaggtttatatct
gi|11 : gaatatgaaagaaaattataaaattaatgttaggtgacacATGCAATGT-ATAAACTAAACA----CTGGTGAACAATAAT--G-TAAC----GGG-----GATAA---------------------------G-A-CGATATG--TATG--------------------------C-TATGAAT--TCTACAT----GGCAAA-ACGTATACTAATTTATACATAAATACGTGACA-ATA--AAT-AAGTGATAATGAAAAGAGAAAGACATGATTGC-AATGATG-TC-ACATAAATTGTTACATACct
gi|12 : aattctgtataaatTACAATGT-GTTAACAAAACA----TTGGTGAACAATAAT-AG-AGAA----AGG------ATAA--GA-ATG------A---AAACA-TAA---------TGCTTATAAAGTTCTTCTCCT----A--GTTAAAC-TATAATG--TAC----CCGTGGCAAA-A-GTAAACTAATTCATATATAAATACGGGAAA-ATA--AAT-TAGC-ATAA-AAGAATAGAGA
gi|13 : catagtttatttctggatatttgATACAAAGT-GTAAACAAAACA----TTGGTGAACAACAAT-AG-AAAA-----GG-----GATAA--GA-ACTAATTTAA---AAGCA-TAA---------TGTTTGTGGTGTTCTTCTCCA----A--GTCATAC-TATAAAT--AACACAT----GGCAAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAACGATAAa
gi|14 : ttaaacatcttatttctgaatttatGAAA--GC-GACG----ACATACTCTCGACAATAT-A-AATAGGTTTATT-TGAACC-T-TTCTGTG-CTCTT-TATAAAAGTATGAA-------CTGCATCGAAAATTGGAATATTTGTCTCAAAAGTCAAAATATTGTTCTCCACAGACAATAGTATCGAG------GTTTATATT------GT
gi|16 : gataaaggtgcagtaga--------A---AAACGA-AAGCA-C-A-ATGCTTAAGAAGTTCTTCTCCT----A--ATCGTGC-TATAAGT--TACACA---G-GGCATA-A-GTGAACTAATTTATAAGTAAATATGTGAAATATACGAGTATAATGGTg
gi|17 : gtgatT-GAATTTGATAAGAA-AACTG-AAAATCAAT------GTGACACATGGGTTGAgttaaactgattgttacctatgtg
gi|17 : aATATGATATACTCTCCGCAATAT-GTGATAGCTCAATTCTAAAC---ATTTTGTG-TTCTT-TATAAAaaagttgaatatgatatactctccgcaatatgtgatagctcaattctaaacattttgtgttctttataaatgaag
gi|18 : atgaatttgataagaaaactgaaaatcaatgtgacacatgggttgaaaagttgaAACACAATGT-GTAAACAAAACATTTTTTGGTG-ACGATTAT-AG-AAAA----A-G-----GATAA--TA-ACG------A---AAGC-ATAAtgaag
gi|19 : gtttaaatatatcttatttcggaatatatat-AATGGT--TA-TCACTGTTTCATACAGATGTGACA-G-TTTCT-TT---AAAATAA------------------A-AA-TA-GAAATAAATGTTGGGGTGACACAtgct
gi|2 : atacataAATACAATGT-GTAAACAAAACA----TTGGTGAACAATAAT-AG-AACAGATCAGTTCTTTAATAA--CAGA--------A---AAGCAATAAG-AACGA-ATGCTTTTGAAATTCTTCT-------A--GTCGTATATATAAAT--GATACATTCGTAACAAA-AAGTAAATTATTTTATACATAAACAGGTTAAC-ATA--ATT-TAGTGGTAATGAAAAGAGAAAGGTATGGTTAC-AATAGTG-TT-TTACTGATTGATATATACTTGATG-A-TTT-T-TTTCTAAAATAACCTT-GAATTTGA-AAGAA-AACTA-GCAATAATTGTTAGGGTTACACAGAAGTAGAGGGG-GAGGGG-GACCTGGTTGGGGGGGGAGGGGGGGGGGGGGGTTCGGGA--GC-GATA-ACTATATACTATCAACAATAT-A-GATAGGTCTACT-TGAATT-TGTTTTGTG-TTCTT-TATAAAAGTATGTA-------CTGCATCGAAAATTGGAATATTTCTCTC-AAAGTCCAAATGTTGTTCTCCAATGAGAGGAGTATTAAT------GTTTATATT------GTC--AGCCAGTGCGTTGA-AAA------GCCTCGCGACaattttaataacaaa
gi|20 : gATACAATGT-GTCAATAAAACA----TTGATGAAAAATAATCAGTAGAA----AGG-----G--AA--TA-A--------G---AA-CGAAAAC-A--GA-ATGTTTGTGAAATTC
gi|21 : tatttatatatATACAATGT-GGCAACAAAACA----TTGATGTACAATAAT-AT-AAAA----A
gi|22 : attaaaaagcatgttagtttaaacatagtttatgcttcattaatgcACACAATGT-GTAAACAAAACA----CTGGTGAATAATAa
gi|23 : tactatatgaaacatattttatacctgaatatatatataaatatatacacacTTTATACATAAATGTGTGAAA-ATA--AAT-CGATGATAATGAAAATATAAAGATATTATTAC-AA-AGTGTTT-TTGCTGATGGATGCA
gi|3 : tTACAACGT-GTTAACAAAACA----TCATTAACCAACAGT-AT-ACAT----CGG------ATAA--AA-A--------ACGAAAGCATTA----------TGCTTATGAAATTCTTCTC------CTTGTCATAA-TATAAAT--TACACATTTATGGCAAA-ATGTA---T--TTTATTCATAAATATGTGAAA-TTA--AAT-TAATGCTAGCGATATTAGAAAGATGTGATAACAAATGTCG-TTATTTCTGATTAATACATACGTGACA-G-TTTCT-TT---AAATTAACCATAAAATTTGA-ATGAACAATTA-GAAATACATGTTAGGGTGACACAGAGGT-GAAGAA-AAAAGCAGAC
gi|3 : AA--GCAGAC-TACTATAT--TATCAACAATATTA-GGTATTTCTACT-TTAATC--ATTTCGTA-TTCTT-TACGAAACTATTTG-------CTTCATCGAAAATTCTATTATTTGCCTC-AAAGTCAAAATGTCGTTCTCAAAAGAGAATGGACTTAAG------GTTTATTTT------GTtactatattatcaacaatattaggtatttctactttaatcatttcgtattctttacgaaactatttgcttcatcgaaaattctattatttgcctcaaagtcaaaatgtcgttctcaaaagagaatggacttaaggtttattttgtat
gi|4 : tacaacgtgttaacaaaacatcattaaccaacagtatacatcggataaaaaacgaaagcattatgcttatgaaattcttctccttgtcataatataaattacacatttatggcaaaatgtattttattcataaatatgtgaaattaaattaatgctagcgatattagaaagatgtgataacaaatgtcgttatttctgattaatacatacgtgacagtttctttaaattaaccataaaatttgaatgaacaattagaaatacatgttagggtgacacagaggtgaagaaaaTACGATATAGTCTCAACAATATCA-AATGTGTCTACC-TGAAG--TGTTTAGTG-TTCTT-TATAAAAGTATGAA-------CTGCATCGA----T----TATTTGTCTA-AAAGTCAAAATGTTGTTCTGCAAAGAGAAAAAAATTAAT------GTTTATATTATGCAAGTC--AGACAGTGCACTGA-AAAGCACTTGCCTCACGACat
gi|5 : aggtaaacATACAATGA-GTAAACAAA-CA----TTGGTGAACAACTAT-AG-AAAA-----GG-----GATAA--GA-ACG------A---AAGTA-TAA---------TGCTTATAGAG--CTTCGT------A--GTCGTTC-TATAAAT--TGCACAT----GGCAAA-ATGGAAGTTAATTTGTACATAGATATCTGAAA-ATT--AAT-AAGTGACAATGAAAAGCGAAAGATATGATTTC-AATGGTA-TT-TAACTGACGGTTTCTTATGTGGTAGA-TTT-T-TT---AAAATAACTGT-GTGTTTGA-A-GAA-AACT----------TGTTAGGGTAACACAGGGGTAGAGGGGAGAAATC-GACtctatatttattacagcgaaaacaaagtgctatcagttttctatacacgagcgcagaggaggctcaaccgtatttttcaaaaacacgattttgattgagagatctacaactcgtacggagtctcgcaagctggacttgcttctttaccaaagttaaaatacttcgacactttacttt
gi|5 : taaacatattttatttatatAGGGGTAGAGGGGAGA----AA--TC-GACA-ACGATATACACTCAACAATAT-A-AACAGTTTCCCT-TAAGCaacgatatacactcaacaatataaacagtttcccttaagcaattgtat
gi|6 : taaacatattttatttatatatacaatgagtaaacaaacattggtgaacaactatagaaaagggataagaacgaaagtataatgcttatagagcttcgtagtcgttctataaattgcacatggcaaaatggaagttaatttgtacatagatatctgaaaattaataagtgacaatgaaaagcgaaagatatgatttcaatggtatttaactgacggtttcttatgtggtagattttttaaaataactgtgtgtttgaagaaaacttgttagggtaacacTACAATGT-GTAAACAAAACA----TTGGTGGACAATACT-AG-AAAA----ATG-----GATAA--TA-ACG------A---AAGCA-TAA----TTA-ATGCCAATGAAGTTCTTCTCTTATTTA--GTCTTAC-TATAAATATTACACAT--------------------AATTTATA--TAAATATGTGAAA-ATA--AAT-CAAT--TAA-GAGA---GAAAGATACGATTAC-AATGCTG-T----A-TAATTG-TACA--CGTGATA-AATTT-TGTT---TAAATAACTAT-GAATTTGA-ATAAT-AATTA-GAAATAAATGTaattgtat
gi|7 : ctttaaacatatttcatttctgaatacatgATACAATGTTGTTAATGA--CA----GTGATGTACAAAAAT-AA-CAAA----AGG------ATAT--GA-ATG------A---AAGCA-TAA---------TGCTGAAGGAAATCTTCTC------ATAGTTATATATACAAAT--TATATATTTGTGGTAAATA-ATAAACTGATTTATCAATAAGTATATGAAA-ATA--AAT-TAATGATAGTGAAAATAGAAGTGT-TTATCAC------TG-TT-TTA
gi|8 : taaacatatgttattttgcaatatatatTACAATGT-ATTACCCAAACA----CTGGTGAACAATACT-AG-AGAA----AGG-----ATTAG--GATG--------A---AAGCA-TAA---------TGCATATAAAATTCT----------A--GTTGTAC-TATAAAT--TGCACATTTGTTGCAAA-TTGTAAACTGATTTATACATAAATATATGAAA-GTT--AAT-T-ATTATAGTGAAAATAGAAATCCATGATTAC-AAta
gi|9 : aaacatattttatttctcagtaactatatCAATAT-A---T-GATCTACT-TGAAA--TGTTTCGTG-TTCTTGTCAAAAAATGTGTAAACTCTTCTGCATGGAAAATTCGAATGTT------------CAATTTATT-TTCTCTAAAAAGAAATGAATCAAGATAAATGTTTTTTTA------ATC--AAACAGTGCGTTGATAAT-CACTTGACTTGCGAC
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAAGCACTTGCCTTGCAACTCTATATTTTTTTAATGAATACAGGAAAAAAAATTAAATGCTGTGCGTGTTCCATAACACAACGCAGACACAAGAGAGACACAACCAGTTAACACTTGAAAAAAAAAATGATTGAGATGACTAGAACTTCGGTTCGGTGTTT
Unaligned ( gi|24 ): AACATATTTTATTTTTTAATATATATGCAATGTGCATTTGTGAACTATACTAGAAAAGGGAAAAGAATTAAT
Unaligned ( gi|25 ): TCTAAAATTTGATCTTGGTTGAGAGAACTACATTTAGTTCGGAATCTCGCATGCTGAATTTAAATACTTCT
Unaligned ( gi|26 ): CGCATGGTCGTAGGAGCGTTTCAATTATTATTTGGGGGAGGGGGTGCTCCTACGCCTATGTT
Unaligned ( gi|27 ): AATGAATATTTTATACATGGCAGGAATATATTGTTACAATACTTATTCACA
Unaligned ( gi|28 ): TACACACGGTCGTAGGAGCGTTTCAATTACAATTATTTGGGA
Unaligned ( gi|29 ): TAACATTTTTATTTCTCAGTATATACATGTATATATA
Unaligned ( gi|30 ): ACGAGAGCATAACGCTCATGAAATTCTTCTCCTTG
Alignments
lowQualScore : 11 111111111 444444444 333333333 22222 111 1111 111 111 11 1111 2222 1111111 11 111111 111111 11 1 11
lowQualScore : 2 1 6666 3 3 33 44 222222222 4 2 888888 33 2 666666666 0 555555555 1 7 55 66666 777 2 3 44 3 0 4 5 4 0 2222 3 55 999 333 111 666 5 5 7 5 2 5 0 6 8 00 99 1 99 6 99 6 0 4444 1 4 2222 2 5 5 0 0 3 8888888 6 44 1 1 666666 999999 33 1 7 0 66
lowQualScore : . . .... . . .. .. ......... . . ...... .. . ......... . ......... . . .. ..... ... . . .. . . . . . . .... . .. ... ... ... ... . . . . . . . . . .. .. . .. . .. . . .... . . .... . . . . . . ....... . .. . . ...... ...... .. . . . ..
lowQualScore : 9 0 1111 1 1 77 66 333333333 0 9 222222 99 9 333333333 5 999999999 8 3 00 99999 444 2 3 66 3 4 7 5 0 1 4444 6 22 333 555 777 888 0 0 6 0 2 0 2 0 0 22 55 4 22 7 66 7 1 1111 9 4 4444 2 0 0 1 3 0 6666666 6 11 0 0 444444 222222 88 0 0 0 77
consensus : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-AAAAAGGG-AT---------AAGAA-C------G--AAAGCA-TAA-----AATGCTTATGAAATTCTTCTC------A--GTCGTAC-TATAA--ATTACACATTCGTGGCAAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGAT-A-ATTT-T-TT---AAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
Reference ( family-5905 ) : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-AAAAAGGG-AT---------AANAA-C------G--AAAGCA-TAA---C-AATGCTTATGAAGTTCTTCTC------A--GTCGTAC-TATAA--ATTACACATTCGTGGCAAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGAT-A-ATTT-T-TT---AAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
gi|1 : ATACAATAT-GTTAACAAAACATG----AGTGCAAAATAAT-TG-AAAT-TGG-AT---------AAGAC-C------A--AAAGCA-TA----C---TGTCTATGGCATTATTCTC------CTTGTCATAT-TACAA--ATTGCACATCTATGGCAAA-A-----AGTAATCCATAGATACATATGTGAAA-TTA--AAT-TAATGG----GAAAA---AAAGATATGATTAC-AATGGTGGTTATTACTGATTGATACA---GT--T-G-CTTA-C-TT---AAACTAATCAT-GAATTTGA-ATTAA-AACCA-GAAATAAATGCTGGAATAAAACAAAGGTGGATGGG-AAAGGT-GAC
gi|1 : aaaacatactagttgatttctcaatacatataggcttAAGGTGGATGGGAAAGGT-GACATATTATATACTTTCAACAATGT-AAGAAATATCTACT-TGAACC-T-TTTCGTGTTTTTT-TATCAAAGTTTGAA-------CTGTATCCGAAATTGAAATATTTGTCTC--------AAATATTGTTTTCCAATGAGAATGCAATTTAG------GTTTATATT------GTCCAAGTCAGAGAA-TGA-AAA-atattatatactttcaacaatgtaagaaatatctacttgaaccttttcgtgtttttttatcaaagtttgaactgtatccgaaattgaaatatttgtctcaaatattgttttccaatgagaatgcaatttaggtttatattgtccaagtcagagaatgaaaattagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : aaaacatactagttgatttctcaatacatataggcttatacaatatgttaacaaaacatgagtgcaaaataattgaaattggataagaccaaaagcatactgtctatggcattattctccttgtcatattacaaattgcacatctatggcaaaaagtaatccatagatacatatgtgaaattaaattaatgggaaaaaaagatatgattacaatggtggttattactgattgatacagttgcttacttaaactaatcatgaatttgaattaaaaccagaaataaatgctggaataaaaca-GAATATGA-AAGAA-AATTATAAAATTAATGTTAGG-TGACACAGGGGTAGAGGGG-GGAttagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : AGGGGTAGAGGGGGGACCAACA--AC-AATATAC-ATGTACTCTTAACAACAT-A-TATAGGTCTACT-TGAACCATGTT--GTG-TTCCT-T------------A-------CTGCATGAAAGATTTGAATATTTGTATC--AAGTCAAAATGTTGTTGTCCAAATGGTAAAATATTAAG------GTTTATATccaacaacaatatacatgtactcttaacaacatatataggtctacttgaaccatgttgtgttccttactgcatgaaagatttgaatatttgtatcaagtcaaaatgttgttgtccaaatggtaaaatattaaggtttatatct
gi|11 : gaatatgaaagaaaattataaaattaatgttaggtgacacATGCAATGT-ATAAACTAAACACT----GGTGAACAATAAT--G-TAACGGGG-AT---------AAGA--C------G-------A-TA--------TG--TATG--------------------------C-TATGA--ATTCTACAT----GGCAAA-ACGTATACTAATTTATACATAAATACGTGACA-ATA--AAT-AAGTGATAATGAAAAGAGAAAGACATGATTGC-AATGATG-TC-ACATAAATTGTTACATACct
gi|12 : aattctgtataaatTACAATGT-GTTAACAAAACATT----GGTGAACAATAAT-AG-AGAAA-GG-AT---------AAGAA-T------G--AAAACA-T-------AATGCTTATAAAGTTCTTCTCCT----A--GTTAAAC-TATAA--TGTAC----CCGTGGCAAA-A-GTAAACTAATTCATATATAAATACGGGAAA-ATA--AAT-TAGC-ATAA-AAGAATAGAGA
gi|13 : catagtttatttctggatatttgATACAAAGT-GTAAACAAAACATT----GGTGAACAACAAT-AG-AAAA-GGG-AT---------AAGAA-CTAATTTA--AAAGCA-TAA-------TGTTTGTGGTGTTCTTCTCCA----A--GTCATAC-TATAA--ATAACACAT----GGCAAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAACGATAAa
gi|14 : ttaaacatcttatttctgaatttatGAAA--GC-GAC----GACATACTCTCGACAATAT-A-AATAGGTTTATT-TGAACC-T-TTCTGTG-CTCTT-TATAAAAGTATGAA-------CTGCATCGAAAATTGGAATATTTGTCTCAAAAGTCAAAATATTGTTCTCCACAGACAATAGTATCGAG------GTTTATATT------GT
gi|16 : gataaaggtgcagtagaG-AT---------AA-AA-C------G--AAAGCA-------C-AATGCTTAAGAAGTTCTTCTCCT----A--ATCGTGC-TATAA--GTTACACA---G-GGCATA-A-GTGAACTAATTTATAAGTAAATATGTGAAATATACGAGTATAATGGTg
gi|17 : gtT-GAATTTGATAAGAA-AACTG-AAAATCAAT------GTGACACATGGGTTGAgttaaactgattgttacctatgtg
gi|17 : aATATGATATACTCTCCGCAATAT-GTGATAGCTCAATTCTAAAC---ATTTTGTG-TTCTT-TATAAAaaagttgaatatgatatactctccgcaatatgtgatagctcaattctaaacattttgtgttctttataaatgaag
gi|18 : atgaatttgataagaaaactgaaaatcaatgtgacacatgggttgaaaagttgaAACACAATGT-GTAAACAAAACATTTTTTGGTGA-CGATTAT-AG-AAAAAGG--AT---------AATAA-C------G--AAAGCA-T-------AATGCTtgaag
gi|19 : gtttaaatatatcttatttcggaatatatat-AATGGT--TA-TCACTGTTTCATACAGATGTGAC-A-GTTTCT-TT---AAAATAA------------------A-AA-TA-GAAATAAATGTTGGGGTGACACA
gi|2 : atacataAATACAATGT-GTAAACAAAACATT----GGTGAACAATAAT-AG-AACA---G-ATCAGTTCTTTAATAA-C------AGAAAAGCAATAAGAACGAATGCTTTTGAAATTCTTCT-------A--GTCGTATATATAA--ATGATACATTCGTAACAAA-AAGTAAATTATTTTATACATAAACAGGTTAAC-ATA--ATT-TAGTGGTAATGAAAAGAGAAAGGTATGGTTAC-AATAGTG-TT-TTACTGATTGATATATACTTGAT-G-ATTT-T-TTTCTAAAATAACCTT-GAATTTGA-AAGAA-AACTA-GCAATAATTGTTAGGGTTACACAGAAGTAGAGGGG-GAGGGG-GACCTGGTTGGGGGGGGAGGGGGGGGGGGGGGTTCGGGA--GC-GATA-ACTATATACTATCAACAATAT-A-GATAGGTCTACT-TGAATT-TGTTTTGTG-TTCTT-TATAAAAGTATGTA-------CTGCATCGAAAATTGGAATATTTCTCTC-AAAGTCCAAATGTTGTTCTCCAATGAGAGGAGTATTAAT------GTTTATATT------GTC--AGCCAGTGCGTTGA-AAA------GCCTCGCGACaattttaataacaaa
gi|20 : gATACAATGT-GTCAATAAAACATT----GATGAAAAATAATCAGTAGAAAGGGAAT---------AAGAA-C------G--AAAAC----A---G-AATGTTTGTGAAATTC
gi|21 : tatttatatatATACAATGT-GGCAACAAAACATT----GATGTACAATAAT-AT-AAAAA
gi|22 : attaaaaagcatgttagtttaaacatagtttatgcttcattaatgcACACAATGT-GTAAACAAAACACT----GGTGAATAATAa
gi|23 : tactatatgaaacatattttatacctgaatatatatataaatatatacacacTTTATACATAAATGTGTGAAA-ATA--AAT-CGATGATAATGAAAATATAAAGATATTATTAC-AA-AGTGTTT-TTGCTGATGGATGCA
gi|3 : tTACAACGT-GTTAACAAAACATC----ATTAACCAACAGT-AT-ACATCGG--AT---------AAAAAAC------G--AAAGCA-TTA-------TGCTTATGAAATTCTTCTC------CTTGTCATAA-TATAA--ATTACACATTTATGGCAAA-ATGTA---T--TTTATTCATAAATATGTGAAA-TTA--AAT-TAATGCTAGCGATATTAGAAAGATGTGATAACAAATGTCG-TTATTTCTGATTAATACATACGTGAC-A-GTTTCT-TT---AAATTAACCATAAAATTTGA-ATGAACAATTA-GAAATACATGTTAGGGTGACACAGAGGT-GAAGAA-AAAAGCAGAC
gi|3 : AA--GCAGAC-TAC--TATATTATCAACAATATTA-GGTATTTCTACT-TTAATC--ATTTCGTA-TTCTT-TACGAAACTATTTG-------CTTCATCGAAAATTCTATTATTTGCCTC-AAAGTCAAAATGTCGTTCTCAAAAGAGAATGGACTTAAG------GTTTATTTT------GTtactatattatcaacaatattaggtatttctactttaatcatttcgtattctttacgaaactatttgcttcatcgaaaattctattatttgcctcaaagtcaaaatgtcgttctcaaaagagaatggacttaaggtttattttgtat
gi|30 : tacaacgtgttaacaaaacatcattaaccaacagtatacatcggataaaaaacgaaagcattatgcttatgaaattcttctccttgtcataatataaattacacatttatggcaaaatgtattttattcataaatatgtgaaattaaattaatgctagcgatattagaaagatgtgataacaaatgtcgttatttctgattaatacatacgtgacagtttctttaaattaaccataaaatttgaatgaacaattagaaatacatgttagggtgacacagaggtgaagaaaaA-C------G--AGAGCA-TAA---C----GCTCATGAAATTCTTCTC------at
gi|4 : TACGATATAGTCTCAACAATATCA-AATGTGTCTACC-TGAAG--TGTTTAGTG-TTCTT-TATAAAAGTATGAA-------CTGCATCGA----T----TATTTGTCTA-AAAGTCAAAATGTTGTTCTGCAAAGAGAAAAAAATTAAT------GTTTATATTATGCAAGTC--AGACAGTGCACTGA-AAAGCACTTGCCTCACGACcttg
gi|5 : aggtaaacATACAATGA-GTAAACAAA-CATT----GGTGAACAACTAT-AG-AAAA-GGG-AT---------AAGAA-C------G--AAAGTA-TAA-------TGCTTATAGAG--CTTCGT------A--GTCGTTC-TATAA--ATTGCACAT----GGCAAA-ATGGAAGTTAATTTGTACATAGATATCTGAAA-ATT--AAT-AAGTGACAATGAAAAGCGAAAGATATGATTTC-AATGGTA-TT-TAACTGACGGTTTCTTATGTGGT-AGATTT-T-TT---AAAATAACTGT-GTGTTTGA-A-GAA-AACT----------TGTTAGGGTAACACAGGGGTAGAGGGGAGAAATC-GACtctatatttattacagcgaaaacaaagtgctatcagttttctatacacgagcgcagaggaggctcaaccgtatttttcaaaaacacgattttgattgagagatctacaactcgtacggagtctcgcaagctggacttgcttctttaccaaagttaaaatacttcgacactttacttt
gi|5 : taaacatattttatttatatAGGGGTAGAGGGGAGA----AA--TC-GACA-ACGATATACACTCAACAATAT-A-AACAGTTTCCCT-TAAGCaacgatatacactcaacaatataaacagtttcccttaagcaattgtat
gi|6 : taaacatattttatttatatatacaatgagtaaacaaacattggtgaacaactatagaaaagggataagaacgaaagtataatgcttatagagcttcgtagtcgttctataaattgcacatggcaaaatggaagttaatttgtacatagatatctgaaaattaataagtgacaatgaaaagcgaaagatatgatttcaatggtatttaactgacggtttcttatgtggtagattttttaaaataactgtgtgtttgaagaaaacttgttagggtaacacTACAATGT-GTAAACAAAACATT----GGTGGACAATACT-AG-AAAAATGG-AT---------AATAA-C------G--AAAGCA-TAAT--T-AATGCCAATGAAGTTCTTCTCTTATTTA--GTCTTAC-TATAAATATTACACA--------------------TAATTTAT--ATAAATATGTGAAA-ATA--AAT-CAAT--TAA-GAG---AGAAAGATACGATTAC-AATGCTG-----TA-TAATTG-TAC--ACGTGATAA-ATTT-TGTT---TAAATAACTAT-GAATTTGA-ATAAT-AATTA-GAAATAAATGTaattgtat
gi|7 : ctttaaacatatttcatttctgaatacatgATACAATGTTGTTAATGA--CAGT----GATGTACAAAAAT-AA-CAAAAGG--AT---------ATGAA-T------G--AAAGCA-TAA-------TGCTGAAGGAAATCTTCTC------ATAGTTATATATACAA--ATTATATATTTGTGGTAAATA-ATAAACTGATTTATCAATAAGTATATGAAA-ATA--AAT-TAATGATAGTGAAAATAGAAGTGT-TTATCAC------TG-TT-TTA
gi|8 : taaacatatgttattttgcaatatatatTACAATGT-ATTACCCAAACACT----GGTGAACAATACT-AG-AGAAA-GG-AT---------TAGGA-T------G--AAAGCA-T-------AATGCATATAAAATTCT----------A--GTTGTAC-TATAA--ATTGCACATTTGTTGCAAATT-GTAAACTGATTTATACATAAATATATGAAA-GTT--AAT-T-ATTATAGTGAAAATAGAAATCCATGATTAC-AAta
gi|9 : aaacatattttatttctcagtaactatatTATGATGAAATATCTGCAATAT-A---T-GATCTACT-TGAAA--TGTTTCGTG-TTCTTGTCAAAAAATGTGTAAACTCTTCTGCATGGAAAATTCGAATGTT------------CAATTTATT-TTCTCTAAAAAGAAATGAATCAAGATAAATGTTTTTTTA------ATC--AAACAGTGCGTTGATAAT-CACTTGACTTGCGAC
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAAGCACTTGCCTTGCAACTCTATATTTTTTTAATGAATACAGGAAAAAAAATTAAATGCTGTGCGTGTTCCATAACACAACGCAGACACAAGAGAGACACAACCAGTTAACACTTGAAAAAAAAAATGATTGAGATGACTAGAACTTCGGTTCGGTGTTT
Unaligned ( gi|24 ): AACATATTTTATTTTTTAATATATATGCAATGTGCATTTGTGAACTATACTAGAAAAGGGAAAAGAATTAAT
Unaligned ( gi|25 ): TCTAAAATTTGATCTTGGTTGAGAGAACTACATTTAGTTCGGAATCTCGCATGCTGAATTTAAATACTTCT
Unaligned ( gi|26 ): CGCATGGTCGTAGGAGCGTTTCAATTATTATTTGGGGGAGGGGGTGCTCCTACGCCTATGTT
Unaligned ( gi|27 ): AATGAATATTTTATACATGGCAGGAATATATTGTTACAATACTTATTCACA
Unaligned ( gi|28 ): TACACACGGTCGTAGGAGCGTTTCAATTACAATTATTTGGGA
Unaligned ( gi|29 ): TAACATTTTTATTTCTCAGTATATACATGTATATATA
Alignments
lowQualScore : 11 111111111 111111 4444444 333333333 22222 1 1111 1111111 11 1111 2222 1111111 11 111111 111111 11 1 11
lowQualScore : 2 1 5555 2 2 7 00 111111111 2 222222 2 3333333 555555555 1 7 55 66666 3 3 4 2 3 44 3 0 4 5 4 0 2222 3 55 999 6666666 666 5 5 7 5 2 5 0 6 8 00 99 1 99 6 99 6 0 4444 1 4 2222 2 5 5 0 0 3 8888888 6 44 1 1 666666 999999 33 1 7 0 66
lowQualScore : . . .... . . . .. ......... . ...... . ....... ......... . . .. ..... . . . . . .. . . . . . . .... . .. ... ....... ... . . . . . . . . . .. .. . .. . .. . . .... . . .... . . . . . . ....... . .. . . ...... ...... .. . . . ..
lowQualScore : 7 9 7777 9 9 8 77 444444444 7 111111 9 4444444 999999999 8 3 00 99999 6 6 5 2 3 66 3 4 7 5 0 1 4444 6 22 333 2222222 888 0 0 6 0 2 0 2 0 0 22 55 4 22 7 66 7 1 1111 9 4 4444 2 0 0 1 3 0 6666666 6 11 0 0 444444 222222 88 0 0 0 77
consensus : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-AAAAAGGG-ATAAG---------AA-C------GAAAGC-ATAA-------TGCTTATGAAATTCTTCTC------A--GTCGTAC-TATAA--ATTACACATTCGTGGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGAT-A-ATTT-T-T---TAAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
Reference ( family-5905 ) : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-AAAAAGGG-ATAAG---------AA-C------GAAAGC-ATAA-----AATGCTTATGAAATTCTTCTC------A--GTCGTAC-TATAA--ATTACACATTCGTGGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGAT-A-ATTT-T-T---TAAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
gi|1 : ATACAATAT-GTTAACAAAACATG----AGTGCAAAATAAT-TG-AAAT-TGG-ATAAG---------AC-C------AAAAGC-ATAC-------TGTCTATGGCATTATTCTC------CTTGTCATAT-TACAA--ATTGCACATCTATGGC-AAA-A-----AGTAATCCATAGATACATATGTGAAA-TTA--AAT-TAATGG----GAAAA---AAAGATATGATTAC-AATGGTGGTTATTACTGATTGATACA---GT--T-G-CTTA-C-T---TAAACTAATCAT-GAATTTGA-ATTAA-AACCA-GAAATAAATGCTGGAATAAAACAAAGGTGGATGGG-AAAGGT-GAC
gi|1 : aaaacatactagttgatttctcaatacatataggcttAAGGTGGATGGGAAAGGT-GACATATTATATACTTTCAACAATGT-AAGAAATATCTACT-TGAACC-T-TTTCGTGTTTTTT-TATCAAAGTTTGAA-------CTGTATCCGAAATTGAAATATTTGTCTC--------AAATATTGTTTTCCAATGAGAATGCAATTTAG------GTTTATATT------GTCCAAGTCAGAGAA-TGA-AAA-atattatatactttcaacaatgtaagaaatatctacttgaaccttttcgtgtttttttatcaaagtttgaactgtatccgaaattgaaatatttgtctcaaatattgttttccaatgagaatgcaatttaggtttatattgtccaagtcagagaatgaaaattagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : aaaacatactagttgatttctcaatacatataggcttatacaatatgttaacaaaacatgagtgcaaaataattgaaattggataagaccaaaagcatactgtctatggcattattctccttgtcatattacaaattgcacatctatggcaaaaagtaatccatagatacatatgtgaaattaaattaatgggaaaaaaagatatgattacaatggtggttattactgattgatacagttgcttacttaaactaatcatgaatttgaattaaaaccagaaataaatgctggaataaaaca-GAATATGA-AAGAA-AATTATAAAATTAATGTTAGG-TGACACAGGGGTAGAGGGG-GGAttagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : AGGGGTAGAGGGGGGACCAACA--AC-AATATAC-ATGTACTCTTAACAACAT-A-TATAGGTCTACT-TGAACCATGTT--GTG-TTCCT-T------------A-------CTGCATGAAAGATTTGAATATTTGTATC--AAGTCAAAATGTTGTTGTCCAAATGGTAAAATATTAAG------GTTTATATccaacaacaatatacatgtactcttaacaacatatataggtctacttgaaccatgttgtgttccttactgcatgaaagatttgaatatttgtatcaagtcaaaatgttgttgtccaaatggtaaaatattaaggtttatatct
gi|11 : gaatatgaaagaaaattataaaattaatgttaggtgacacATGCAATGT-ATAAACTAAACACT----GGTGAACAATAAT--G-TAACGGGG-ATAAG---------A--C------GA------TA--------TG--TATG--------------------------C-TATGA--ATTCTACAT----GGC-AAA-ACGTATACTAATTTATACATAAATACGTGACA-ATA--AAT-AAGTGATAATGAAAAGAGAAAGACATGATTGC-AATGATG-TC-ACATAAATTGTTACATACct
gi|12 : aattctgtataaatTACAATGT-GTTAACAAAACATT----GGTGAACAATAAT-AG-AGAAAGG--ATAAG---------AA-T------GAAAAC-ATAA-------TGCTTATAAAGTTCTTCTCCT----A--GTTAAAC-TATAA--TGTAC----CCGTGGC-AAA-A-GTAAACTAATTCATATATAAATACGGGAAA-ATA--AAT-TAGC-ATAA-AAGAATAGAGA
gi|13 : catagtttatttctggatatttgATACAAAGT-GTAAACAAAACATT----GGTGAACAACAAT-AG-AAAA-GGG-ATAAG---------AA-CTAATTTAAAAGC-ATAA-------TGTTTGTGGTGTTCTTCTCCA----A--GTCATAC-TATAA--ATAACACAT----GGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAACGATAAa
gi|14 : ttaaacatcttatttctgaatttatGAAA--GC-GAC----GACATACTCTCGACAATAT-A-AATAGGTTTATT-TGAACC-T-TTCTGTG-CTCTT-TATAAAAGTATGAA-------CTGCATCGAAAATTGGAATATTTGTCTCAAAAGTCAAAATATTGTTCTCCACAGACAATAGTATCGAG------GTTTATATT------GT
gi|16 : gataaaggtgcagtagaG-ATAA----------AA-C------GAAAGC-ACAA-------TGCTTAAGAAGTTCTTCTCCT----A--ATCGTGC-TATAA--GTTACACA---G-GGC-ATA-A-GTGAACTAATTTATAAGTAAATATGTGAAATATACGAGTATAATGGTg
gi|17 : gtT-GAATTTGATAAGAA-AACTG-AAAATCAAT------GTGACACATGGGTTGAgttaaactgattgttacctatgtg
gi|17 : aATATGATATACTCTCCGCAATAT-GTGATAGCTCAATTCTAAAC---ATTTTGTG-TTCTT-TATAAAaaagttgaatatgatatactctccgcaatatgtgatagctcaattctaaacattttgtgttctttataaatgaag
gi|18 : atgaatttgataagaaaactgaaaatcaatgtgacacatgggttgaaaagttgaAACACAATGT-GTAAACAAAACATTTTTTGGTGA-CGATTAT-AG-AAAAAGG--ATAAT---------AA-C------GAAAGC-AT-------AATGCTtgaag
gi|19 : gtttaaatatatcttatttcggaatatatat-AATGGT--TA-TCACTGTTTCATACAGATGTGAC-A-GTTTCT-T---TAAAATAA------------------A-AA-TA-GAAATAAATGTTGGGGTGACACA
gi|2 : atacataAATACAATGT-GTAAACAAAACATT----GGTGAACAATAAT-AG-AACA---G-ATCAGTTCTTTAATAA-CAG----AAAAGCAATAAGAACGAATGCTTTTGAAATTCTTCT-------A--GTCGTATATATAA--ATGATACATTCGTAACAAAA-A-GTAAATTATTTTATACATAAACAGGTTAAC-ATA--ATT-TAGTGGTAATGAAAAGAGAAAGGTATGGTTAC-AATAGTG-TT-TTACTGATTGATATATACTTGAT-G-ATTT-T-TTTCTAAAATAACCTT-GAATTTGA-AAGAA-AACTA-GCAATAATTGTTAGGGTTACACAGAAGTAGAGGGG-GAGGGG-GACCTGGTTGGGGGGGGAGGGGGGGGGGGGGGTTCGGGA--GC-GATA-ACTATATACTATCAACAATAT-A-GATAGGTCTACT-TGAATT-TGTTTTGTG-TTCTT-TATAAAAGTATGTA-------CTGCATCGAAAATTGGAATATTTCTCTC-AAAGTCCAAATGTTGTTCTCCAATGAGAGGAGTATTAAT------GTTTATATT------GTC--AGCCAGTGCGTTGA-AAA------GCCTCGCGACaattttaataacaaa
gi|20 : gATACAATGT-GTCAATAAAACATT----GATGAAAAATAATCAGTAGAAAGGGAATAAG---------AA-C------GAAAAC---AG-----AATGTTTGTGAAATTC
gi|21 : tatttatatatATACAATGT-GGCAACAAAACATT----GATGTACAATAAT-AT-AAAAA
gi|22 : attaaaaagcatgttagtttaaacatagtttatgcttcattaatgcACACAATGT-GTAAACAAAACACT----GGTGAATAATAa
gi|23 : tactatatgaaacatattttatacctgaatatatatataaatatatacacacTTTATACATAAATGTGTGAAA-ATA--AAT-CGATGATAATGAAAATATAAAGATATTATTAC-AA-AGTGTTT-TTGCTGATGGATGCA
gi|24 : tATGCAATGT-G---------CATT----TGTGAACTATACT-AG-AA-AAGGG-AAAAG---------AA-
gi|3 : aacatattttattttttaatatatTACAACGT-GTTAACAAAACATC----ATTAACCAACAGT-AT-ACATCGG--ATAAA---------AAAC------GAAAGC-ATTA-------TGCTTATGAAATTCTTCTC------CTTGTCATAA-TATAA--ATTACACATTTATGGC-AAA-ATGTA---T--TTTATTCATAAATATGTGAAA-TTA--AAT-TAATGCTAGCGATATTAGAAAGATGTGATAACAAATGTCG-TTATTTCTGATTAATACATACGTGAC-A-GTTTCT-T---TAAATTAACCATAAAATTTGA-ATGAACAATTA-GAAATACATGTTAGGGTGACACAGAGGT-GAAGAA-AAAAGCAGACttaat
gi|3 : AA--GCAGAC-TAC--TATATTATCAACAATATTA-GGTATTTCTACT-TTAATC--ATTTCGTA-TTCTT-TACGAAACTATTTG-------CTTCATCGAAAATTCTATTATTTGCCTC-AAAGTCAAAATGTCGTTCTCAAAAGAGAATGGACTTAAG------GTTTATTTT------GTtactatattatcaacaatattaggtatttctactttaatcatttcgtattctttacgaaactatttgcttcatcgaaaattctattatttgcctcaaagtcaaaatgtcgttctcaaaagagaatggacttaaggtttattttgtat
gi|30 : tacaacgtgttaacaaaacatcattaaccaacagtatacatcggataaaaaacgaaagcattatgcttatgaaattcttctccttgtcataatataaattacacatttatggcaaaatgtattttattcataaatatgtgaaattaaattaatgctagcgatattagaaagatgtgataacaaatgtcgttatttctgattaatacatacgtgacagtttctttaaattaaccataaaatttgaatgaacaattagaaatacatgttagggtgacacagaggtgaagaaaaA-C------GAGAGC-ATAA-------CGCTCATGAAATTCTTCTC------at
gi|4 : TACGATATAGTCTCAACAATATCA-AATGTGTCTACC-TGAAG--TGTTTAGTG-TTCTT-TATAAAAGTATGAA-------CTGCATCGA----T----TATTTGTCTA-AAAGTCAAAATGTTGTTCTGCAAAGAGAAAAAAATTAAT------GTTTATATTATGCAAGTC--AGACAGTGCACTGA-AAAGCACTTGCCTCACGACcttg
gi|5 : aggtaaacATACAATGA-GTAAACAAA-CATT----GGTGAACAACTAT-AG-AAAA-GGG-ATAAG---------AA-C------GAAAGT-ATAA-------TGCTTATAGAG--CTTCGT------A--GTCGTTC-TATAA--ATTGCACAT----GGC-AAA-ATGGAAGTTAATTTGTACATAGATATCTGAAA-ATT--AAT-AAGTGACAATGAAAAGCGAAAGATATGATTTC-AATGGTA-TT-TAACTGACGGTTTCTTATGTGGT-AGATTT-T-T---TAAAATAACTGT-GTGTTTGA-A-GAA-AACT----------TGTTAGGGTAACACAGGGGTAGAGGGGAGAAATC-GACtctatatttattacagcgaaaacaaagtgctatcagttttctatacacgagcgcagaggaggctcaaccgtatttttcaaaaacacgattttgattgagagatctacaactcgtacggagtctcgcaagctggacttgcttctttaccaaagttaaaatacttcgacactttacttt
gi|5 : taaacatattttatttatatAGGGGTAGAGGGGAGA----AA--TC-GACA-ACGATATACACTCAACAATAT-A-AACAGTTTCCCT-TAAGCaacgatatacactcaacaatataaacagtttcccttaagcaattgtat
gi|6 : taaacatattttatttatatatacaatgagtaaacaaacattggtgaacaactatagaaaagggataagaacgaaagtataatgcttatagagcttcgtagtcgttctataaattgcacatggcaaaatggaagttaatttgtacatagatatctgaaaattaataagtgacaatgaaaagcgaaagatatgatttcaatggtatttaactgacggtttcttatgtggtagattttttaaaataactgtgtgtttgaagaaaacttgttagggtaacacTACAATGT-GTAAACAAAACATT----GGTGGACAATACT-AG-AAAAATGG-ATAAT---------AA-C------GAAAGC-ATAATT---AATGCCAATGAAGTTCTTCTCTTATTTA--GTCTTAC-TATAAATATTACACA---------------------TAATTTAT--ATAAATATGTGAAA-ATA--AAT-CAAT--TAA-GAG---AGAAAGATACGATTAC-AATGCTG-----TA-TAATTG-TAC--ACGTGATAA-ATTT-TGT---TTAAATAACTAT-GAATTTGA-ATAAT-AATTA-GAAATAAATGTaattgtat
gi|7 : ctttaaacatatttcatttctgaatacatgATACAATGTTGTTAATGA--CAGT----GATGTACAAAAAT-AA-CAAAAGG--ATATG---------AA-T------GAAAGC-ATAA-------TGCTGAAGGAAATCTTCTC------ATAGTTATATATACAA--ATTATATATTTGTGGT-AAATA-ATAAACTGATTTATCAATAAGTATATGAAA-ATA--AAT-TAATGATAGTGAAAATAGAAGTGT-TTATCAC------TG-TT-TTA
gi|8 : taaacatatgttattttgcaatatatatTACAATGT-ATTACCCAAACACT----GGTGAACAATACT-AG-AGAAAGG--ATTAG---------GA-T------GAAAGC-ATAA-------TGCATATAAAATTCT----------A--GTTGTAC-TATAA--ATTGCACATTTGTTGC-AAA-TTGTAAACTGATTTATACATAAATATATGAAA-GTT--AAT-T-ATTATAGTGAAAATAGAAATCCATGATTAC-AAta
gi|9 : aaacatattttatttctcagtaactatatTATGATGAAATATCTGCAATAT-A---T-GATCTACT-TGAAA--TGTTTCGTG-TTCTTGTCAAAAAATGTGTAAACTCTTCTGCATGGAAAATTCGAATGTT------------CAATTTATT-TTCTCTAAAAAGAAATGAATCAAGATAAATGTTTTTTTA------ATC--AAACAGTGCGTTGATAAT-CACTTGACTTGCGAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAAGCACTTGCCTTGCAACTCTATATTTTTTTAATGAATACAGGAAAAAAAATTAAATGCTGTGCGTGTTCCATAACACAACGCAGACACAAGAGAGACACAACCAGTTAACACTTGAAAAAAAAAATGATTGAGATGACTAGAACTTCGGTTCGGTGTTT
Unaligned ( gi|25 ): TCTAAAATTTGATCTTGGTTGAGAGAACTACATTTAGTTCGGAATCTCGCATGCTGAATTTAAATACTTCT
Unaligned ( gi|26 ): CGCATGGTCGTAGGAGCGTTTCAATTATTATTTGGGGGAGGGGGTGCTCCTACGCCTATGTT
Unaligned ( gi|27 ): AATGAATATTTTATACATGGCAGGAATATATTGTTACAATACTTATTCACA
Unaligned ( gi|28 ): TACACACGGTCGTAGGAGCGTTTCAATTACAATTATTTGGGA
Unaligned ( gi|29 ): TAACATTTTTATTTCTCAGTATATACATGTATATATA
Alignments
lowQualScore : 22222222222222222222222 333333333 2222 111 111 1111111 11 1111 2222 1111111 11 111111 111111 11 1 11
lowQualScore : 2 1 5555 2 2 66666666666666666666666 55 44 2 888888 6666 555555555 1 7 55 7777 3 333 2 1 3 44 3 0 4 5 4 0 8 99 3 8 333 6666666 666 5 5 7 5 2 5 0 6 8 00 99 1 99 6 99 6 0 4444 1 4 2222 2 5 5 0 0 3 8888888 6 44 1 1 666666 999999 33 1 7 0 66
lowQualScore : . . .... . . ....................... .. .. . ...... .... ......... . . .. .... . ... . . . .. . . . . . . . .. . . ... ....... ... . . . . . . . . . .. .. . .. . .. . . .... . . .... . . . . . . ....... . .. . . ...... ...... .. . . . ..
lowQualScore : 7 9 7777 9 9 44444444444444444444444 88 77 7 222222 1111 999999999 8 3 00 1111 6 777 2 8 3 66 3 4 7 5 0 1 9 99 6 4 333 2222222 888 0 0 6 0 2 0 2 0 0 22 55 4 22 7 66 7 1 1111 9 4 4444 2 0 0 1 3 0 6666666 6 11 0 0 444444 222222 88 0 0 0 77
consensus : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-A-----------------------AAAAGGG-ATAAGAA-C------GAAAGCATAAT----GCTTATGAAATTCTTCTC------A--GTCGTAC-TATAAAT--TACACATTCGTGGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGATA-A-TTT-T-T---TAAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
Reference ( family-5905 ) : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-A-----------------------AAAAGGG-ATAAGAA-C------GAAAGCATAAT----GCTTATGAAATTCTTCTC------A--GTCGTAC-TATAAAT--TACACATTCGTGGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGATA-A-TTT-T-T---TAAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
gi|1 : ATACAATAT-GTTAACAAAACATG----AGTGCAAAATAAT-TG-A-----------------------AAT-TGG-ATAAGAC-C------AAAAGCATACT----GTCTATGGCATTATTCTC------CTTGTCATAT-TACAAAT--TGCACATCTATGGC-AAA-A-----AGTAATCCATAGATACATATGTGAAA-TTA--AAT-TAATGG----GAAAA---AAAGATATGATTAC-AATGGTGGTTATTACTGATTGATACA---GT--TG-C-TTA-C-T---TAAACTAATCAT-GAATTTGA-ATTAA-AACCA-GAAATAAATGCTGGAATAAAACAAAGGTGGATGGG-AAAGGT-GAC
gi|1 : aaaacatactagttgatttctcaatacatataggcttAAGGTGGATGGGAAAGGT-GACATATTATATACTTTCAACAATGT-AAGAAATATCTACT-TGAACC-T-TTTCGTGTTTTTT-TATCAAAGTTTGAA-------CTGTATCCGAAATTGAAATATTTGTCTC--------AAATATTGTTTTCCAATGAGAATGCAATTTAG------GTTTATATT------GTCCAAGTCAGAGAA-TGA-AAA-atattatatactttcaacaatgtaagaaatatctacttgaaccttttcgtgtttttttatcaaagtttgaactgtatccgaaattgaaatatttgtctcaaatattgttttccaatgagaatgcaatttaggtttatattgtccaagtcagagaatgaaaattagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : aaaacatactagttgatttctcaatacatataggcttatacaatatgttaacaaaacatgagtgcaaaataattgaaattggataagaccaaaagcatactgtctatggcattattctccttgtcatattacaaattgcacatctatggcaaaaagtaatccatagatacatatgtgaaattaaattaatgggaaaaaaagatatgattacaatggtggttattactgattgatacagttgcttacttaaactaatcatgaatttgaattaaaaccagaaataaatgctggaataaaaca-GAATATGA-AAGAA-AATTATAAAATTAATGTTAGG-TGACACAGGGGTAGAGGGG-GGAttagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : AGGGGTAGAGGGGGGACCAACA--AC-AATATAC-ATGTACTCTTAACAACAT-A-TATAGGTCTACT-TGAACCATGTT--GTG-TTCCT-T------------A-------CTGCATGAAAGATTTGAATATTTGTATC--AAGTCAAAATGTTGTTGTCCAAATGGTAAAATATTAAG------GTTTATATccaacaacaatatacatgtactcttaacaacatatataggtctacttgaaccatgttgtgttccttactgcatgaaagatttgaatatttgtatcaagtcaaaatgttgttgtccaaatggtaaaatattaaggtttatatct
gi|11 : gaatatgaaagaaaattataaaattaatgttaggtgacacATGCAATGT-ATAAACTAAACACT----GGTGAACAATAAT--G-T-----------------------AACGGGG-ATAAGA--C------GA-----TA-T----G--TATG--------------------------C-TATGAAT--TCTACAT----GGC-AAA-ACGTATACTAATTTATACATAAATACGTGACA-ATA--AAT-AAGTGATAATGAAAAGAGAAAGACATGATTGC-AATGATG-TC-ACATAAATTGTTACATACct
gi|12 : aattctgtataaatTACAATGT-GTTAACAAAACATT----GGTGAACAATAAT-AG-A-----------------------GAAA-GG-ATAAGAA-T------GAAAACATAAT----GCTTATAAAGTTCTTCTCCT----A--GTTAAAC-TATAATG--TAC----CCGTGGC-AAA-A-GTAAACTAATTCATATATAAATACGGGAAA-ATA--AAT-TAGC-ATAA-AAGAATAGAGA
gi|13 : catagtttatttctggatatttgATACAAAGT-GTAAACAAAACATT----GGTGAACAACAAT-AG-A-----------------------AAA-GGG-ATAAGAA-CTAATTTAAAAGCATAAT----GTTTGTGGTGTTCTTCTCCA----A--GTCATAC-TATAAAT--AACACAT----GGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAACGATAAa
gi|14 : ttaaacatcttatttctgaatttatGAAA--GC-GAC----GACATACTCTCGACAATAT-A-AATAGGTTTATT-TGAACC-T-TTCTGTG-CTCTT-TATAAAAGTATGAA-------CTGCATCGAAAATTGGAATATTTGTCTCAAAAGTCAAAATATTGTTCTCCACAGACAATAGTATCGAG------GTTTATATT------GT
gi|16 : gataaaggtgcagtagaG-ATAA-AA-C------GAAAGCACAAT----GCTTAAGAAGTTCTTCTCCT----A--ATCGTGC-TATAAGT--TACACA---G-GGC-ATA-A-GTGAACTAATTTATAAGTAAATATGTGAAATATACGAGTATAATGGTg
gi|17 : gtT-GAATTTGATAAGAA-AACTG-AAAATCAAT------GTGACACATGGGTTGAgttaaactgattgttacctatgtg
gi|17 : aATATGATATACTCTCCGCAATAT-GTGATAGCTCAATTCTAAAC---ATTTTGTG-TTCTT-TATAAAaaagttgaatatgatatactctccgcaatatgtgatagctcaattctaaacattttgtgttctttataaatgaag
gi|18 : atgaatttgataagaaaactgaaaatcaatgtgacacatgggttgaaaagttgaAACACAATGT-GTAAACAAAACATTTTTTGGTGA-CGATTAT-AG-A-----------------------AAAAGG--ATAATAA-C------GAAAGCATAAT----GCTtgaag
gi|19 : gtttaaatatatcttatttcggaatatatat-AATGGT--TA-TCACTGTTTCATACAGATGTGACA-G-TTTCT-T---TAAAATAA------------------A-AA-TA-GAAATAAATGTTGGGGTGACACA
gi|2 : atacataAATACAATGT-GTAAACAAAACATT----GGTGAACAATAAT-AG-AACAGATCAGTTCTTTAATAACAGAAAAGCA-ATAAGAA-C------G-------AAT----GCTTTTGAAATTCTTCT-------A--GTCGTATATATAAAT--GATACATTCGTAACAAAA-A-GTAAATTATTTTATACATAAACAGGTTAAC-ATA--ATT-TAGTGGTAATGAAAAGAGAAAGGTATGGTTAC-AATAGTG-TT-TTACTGATTGATATATACTTGATG-A-TTT-T-TTTCTAAAATAACCTT-GAATTTGA-AAGAA-AACTA-GCAATAATTGTTAGGGTTACACAGAAGTAGAGGGG-GAGGGG-GACCTGGTTGGGGGGGGAGGGGGGGGGGGGGGTTCGGGA--GC-GATA-ACTATATACTATCAACAATAT-A-GATAGGTCTACT-TGAATT-TGTTTTGTG-TTCTT-TATAAAAGTATGTA-------CTGCATCGAAAATTGGAATATTTCTCTC-AAAGTCCAAATGTTGTTCTCCAATGAGAGGAGTATTAAT------GTTTATATT------GTC--AGCCAGTGCGTTGA-AAA------GCCTCGCGACaattttaataacaaa
gi|20 : gATACAATGT-GTCAATAAAACATT----GATGAAAAATAATCAGTA-----------------------GAAAGGGAATAAGAA-C------GAAAACAGAAT----GTTTGTGAAATTC
gi|21 : tatttatatatATACAATGT-GGCAACAAAACATT----GATGTACAATAAT-AT-A-----------------------AAAA
gi|22 : attaaaaagcatgttagtttaaacatagtttatgcttcattaatgcACACAATGT-GTAAACAAAACACT----GGTGAATAATAa
gi|23 : tactatatgaaacatattttatacctgaatatatatataaatatatacacacTTTATACATAAATGTGTGAAA-ATA--AAT-CGATGATAATGAAAATATAAAGATATTATTAC-AA-AGTGTTT-TTGCTGATGGATGCA
gi|24 : tATGCAATGT-G---------CATT----TGTGAACTATACT-AG-A-----------------------A-AAGGG-AAAAGAA-
gi|3 : aacatattttattttttaatatatTACAACGT-GTTAACAAAACATC----ATTAACCAACAGT-AT-A-----------------------CATCGG--ATAAAAAAC------GAAAGCATTAT----GCTTATGAAATTCTTCTC------CTTGTCATAA-TATAAAT--TACACATTTATGGC-AAA-ATGTA---T--TTTATTCATAAATATGTGAAA-TTA--AAT-TAATGCTAGCGATATTAGAAAGATGTGATAACAAATGTCG-TTATTTCTGATTAATACATACGTGACA-G-TTTCT-T---TAAATTAACCATAAAATTTGA-ATGAACAATTA-GAAATACATGTTAGGGTGACACAGAGGT-GAAGAA-AAAAGCAGACttaat
gi|3 : AA--GCAGAC-TAC--TATATTATCAACAATATTA-GGTATTTCTACT-TTAATC--ATTTCGTA-TTCTT-TACGAAACTATTTG-------CTTCATCGAAAATTCTATTATTTGCCTC-AAAGTCAAAATGTCGTTCTCAAAAGAGAATGGACTTAAG------GTTTATTTT------GTtactatattatcaacaatattaggtatttctactttaatcatttcgtattctttacgaaactatttgcttcatcgaaaattctattatttgcctcaaagtcaaaatgtcgttctcaaaagagaatggacttaaggtttattttgtat
gi|30 : tacaacgtgttaacaaaacatcattaaccaacagtatacatcggataaaaaacgaaagcattatgcttatgaaattcttctccttgtcataatataaattacacatttatggcaaaatgtattttattcataaatatgtgaaattaaattaatgctagcgatattagaaagatgtgataacaaatgtcgttatttctgattaatacatacgtgacagtttctttaaattaaccataaaatttgaatgaacaattagaaatacatgttagggtgacacagaggtgaagaaaaA-C------GAGAGCATAAC----GCTCATGAAATTCTTCTC------at
gi|4 : TACGATATAGTCTCAACAATATCA-AATGTGTCTACC-TGAAG--TGTTTAGTG-TTCTT-TATAAAAGTATGAA-------CTGCATCGA----T----TATTTGTCTA-AAAGTCAAAATGTTGTTCTGCAAAGAGAAAAAAATTAAT------GTTTATATTATGCAAGTC--AGACAGTGCACTGA-AAAGCACTTGCCTCACGACcttg
gi|5 : aggtaaacATACAATGA-GTAAACAAA-CATT----GGTGAACAACTAT-AG-A-----------------------AAA-GGG-ATAAGAA-C------GAAAGTATAAT----GCTTATAGAG--CTTCGT------A--GTCGTTC-TATAAAT--TGCACAT----GGC-AAA-ATGGAAGTTAATTTGTACATAGATATCTGAAA-ATT--AAT-AAGTGACAATGAAAAGCGAAAGATATGATTTC-AATGGTA-TT-TAACTGACGGTTTCTTATGTGGTAGA-TTT-T-T---TAAAATAACTGT-GTGTTTGA-A-GAA-AACT----------TGTTAGGGTAACACAGGGGTAGAGGGGAGAAATC-GACtctatatttattacagcgaaaacaaagtgctatcagttttctatacacgagcgcagaggaggctcaaccgtatttttcaaaaacacgattttgattgagagatctacaactcgtacggagtctcgcaagctggacttgcttctttaccaaagttaaaatacttcgacactttacttt
gi|5 : taaacatattttatttatatAGGGGTAGAGGGGAGA----AA--TC-GACA-ACGATATACACTCAACAATAT-A-AACAGTTTCCCT-TAAGCaacgatatacactcaacaatataaacagtttcccttaagcaattgtat
gi|6 : taaacatattttatttatatatacaatgagtaaacaaacattggtgaacaactatagaaaagggataagaacgaaagtataatgcttatagagcttcgtagtcgttctataaattgcacatggcaaaatggaagttaatttgtacatagatatctgaaaattaataagtgacaatgaaaagcgaaagatatgatttcaatggtatttaactgacggtttcttatgtggtagattttttaaaataactgtgtgtttgaagaaaacttgttagggtaacacTACAATGT-GTAAACAAAACATT----GGTGGACAATACT-AG-A-----------------------AAAATGG-ATAATAA-C------GAAAGCATAATTAATGCCAATGAAGTTCTTCTCTTATTTA--GTCTTAC-TATAAATATTACACAT---------------------AATTTATA--TAAATATGTGAAA-ATA--AAT-CAAT--TAA-GAGA---GAAAGATACGATTAC-AATGCTG-T----A-TAATTG-TACA--CGTGATA-AATTT-TGT---TTAAATAACTAT-GAATTTGA-ATAAT-AATTA-GAAATAAATGTaattgtat
gi|7 : ctttaaacatatttcatttctgaatacatgATACAATGTTGTTAATGA--CAGT----GATGTACAAAAAT-AA-C-----------------------AAAAGG--ATATGAA-T------GAAAGCATAAT----GCTGAAGGAAATCTTCTC------ATAGTTATATATACAAAT--TATATATTTGTGGT-AAATA-ATAAACTGATTTATCAATAAGTATATGAAA-ATA--AAT-TAATGATAGTGAAAATAGAAGTGT-TTATCAC------TG-TT-TTA
gi|8 : taaacatatgttattttgcaatatatatTACAATGT-ATTACCCAAACACT----GGTGAACAATACT-AG-A-----------------------GAAA-GG-ATTAGGA-T------GAAAGCATAAT----GCATATAAAATTCT----------A--GTTGTAC-TATAAAT--TGCACATTTGTTGC-AAATT-GTAAACTGATTTATACATAAATATATGAAA-GTT--AAT-T-ATTATAGTGAAAATAGAAATCCATGATTAC-AAta
gi|9 : aaacatattttatttctcagtaactatatTATGATGAAATATCTGCAATAT-A---T-GATCTACT-TGAAA--TGTTTCGTG-TTCTTGTCAAAAAATGTGTAAACTCTTCTGCATGGAAAATTCGAATGTT------------CAATTTATT-TTCTCTAAAAAGAAATGAATCAAGATAAATGTTTTTTTA------ATC--AAACAGTGCGTTGATAAT-CACTTGACTTGCGAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAAGCACTTGCCTTGCAACTCTATATTTTTTTAATGAATACAGGAAAAAAAATTAAATGCTGTGCGTGTTCCATAACACAACGCAGACACAAGAGAGACACAACCAGTTAACACTTGAAAAAAAAAATGATTGAGATGACTAGAACTTCGGTTCGGTGTTT
Unaligned ( gi|25 ): TCTAAAATTTGATCTTGGTTGAGAGAACTACATTTAGTTCGGAATCTCGCATGCTGAATTTAAATACTTCT
Unaligned ( gi|26 ): CGCATGGTCGTAGGAGCGTTTCAATTATTATTTGGGGGAGGGGGTGCTCCTACGCCTATGTT
Unaligned ( gi|27 ): AATGAATATTTTATACATGGCAGGAATATATTGTTACAATACTTATTCACA
Unaligned ( gi|28 ): TACACACGGTCGTAGGAGCGTTTCAATTACAATTATTTGGGA
Unaligned ( gi|29 ): TAACATTTTTATTTCTCAGTATATACATGTATATATA
Alignments
lowQualScore : 22222222222222222222222 333333333 2222 111 111 1111111 11 1111 2222 1111111 11 111111 111111 11 1 11
lowQualScore : 2 1 5555 2 2 66666666666666666666666 55 44 2 888888 6666 555555555 1 7 55 7777 3 333 2 1 3 44 3 0 4 5 4 0 8 99 3 8 333 6666666 666 5 5 7 5 2 5 0 6 8 00 99 1 99 6 99 6 0 4444 1 4 2222 2 5 5 0 0 3 8888888 6 44 1 1 666666 999999 33 1 7 0 66
lowQualScore : . . .... . . ....................... .. .. . ...... .... ......... . . .. .... . ... . . . .. . . . . . . . .. . . ... ....... ... . . . . . . . . . .. .. . .. . .. . . .... . . .... . . . . . . ....... . .. . . ...... ...... .. . . . ..
lowQualScore : 7 9 7777 9 9 44444444444444444444444 88 77 7 222222 1111 999999999 8 3 00 1111 6 777 2 8 3 66 3 4 7 5 0 1 9 99 6 4 333 2222222 888 0 0 6 0 2 0 2 0 0 22 55 4 22 7 66 7 1 1111 9 4 4444 2 0 0 1 3 0 6666666 6 11 0 0 444444 222222 88 0 0 0 77
consensus : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-A-----------------------AAAAGGG-ATAAGAA-C------GAAAGCATAAT----GCTTATGAAATTCTTCTC------A--GTCGTAC-TATAAAT--TACACATTCGTGGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGATA-A-TTT-T-T---TAAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
Reference ( family-5905 ) : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-A-----------------------AAAAGGG-ATAAGAA-C------GAAAGCATAAT----GCTTATGAAATTCTTCTC------A--GTCGTAC-TATAAAT--TACACATTCGTGGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGATA-A-TTT-T-T---TAAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
gi|1 : ATACAATAT-GTTAACAAAACATG----AGTGCAAAATAAT-TG-A-----------------------AAT-TGG-ATAAGAC-C------AAAAGCATACT----GTCTATGGCATTATTCTC------CTTGTCATAT-TACAAAT--TGCACATCTATGGC-AAA-A-----AGTAATCCATAGATACATATGTGAAA-TTA--AAT-TAATGG----GAAAA---AAAGATATGATTAC-AATGGTGGTTATTACTGATTGATACA---GT--TG-C-TTA-C-T---TAAACTAATCAT-GAATTTGA-ATTAA-AACCA-GAAATAAATGCTGGAATAAAACAAAGGTGGATGGG-AAAGGT-GAC
gi|1 : aaaacatactagttgatttctcaatacatataggcttAAGGTGGATGGGAAAGGT-GACATATTATATACTTTCAACAATGT-AAGAAATATCTACT-TGAACC-T-TTTCGTGTTTTTT-TATCAAAGTTTGAA-------CTGTATCCGAAATTGAAATATTTGTCTC--------AAATATTGTTTTCCAATGAGAATGCAATTTAG------GTTTATATT------GTCCAAGTCAGAGAA-TGA-AAA-atattatatactttcaacaatgtaagaaatatctacttgaaccttttcgtgtttttttatcaaagtttgaactgtatccgaaattgaaatatttgtctcaaatattgttttccaatgagaatgcaatttaggtttatattgtccaagtcagagaatgaaaattagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : aaaacatactagttgatttctcaatacatataggcttatacaatatgttaacaaaacatgagtgcaaaataattgaaattggataagaccaaaagcatactgtctatggcattattctccttgtcatattacaaattgcacatctatggcaaaaagtaatccatagatacatatgtgaaattaaattaatgggaaaaaaagatatgattacaatggtggttattactgattgatacagttgcttacttaaactaatcatgaatttgaattaaaaccagaaataaatgctggaataaaaca-GAATATGA-AAGAA-AATTATAAAATTAATGTTAGG-TGACACAGGGGTAGAGGGG-GGAttagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : AGGGGTAGAGGGGGGACCAACA--AC-AATATAC-ATGTACTCTTAACAACAT-A-TATAGGTCTACT-TGAACCATGTT--GTG-TTCCT-T------------A-------CTGCATGAAAGATTTGAATATTTGTATC--AAGTCAAAATGTTGTTGTCCAAATGGTAAAATATTAAG------GTTTATATccaacaacaatatacatgtactcttaacaacatatataggtctacttgaaccatgttgtgttccttactgcatgaaagatttgaatatttgtatcaagtcaaaatgttgttgtccaaatggtaaaatattaaggtttatatct
gi|11 : gaatatgaaagaaaattataaaattaatgttaggtgacacATGCAATGT-ATAAACTAAACACT----GGTGAACAATAAT--G-T-----------------------AACGGGG-ATAAGA--C------GA-----TA-T----G--TATG--------------------------C-TATGAAT--TCTACAT----GGC-AAA-ACGTATACTAATTTATACATAAATACGTGACA-ATA--AAT-AAGTGATAATGAAAAGAGAAAGACATGATTGC-AATGATG-TC-ACATAAATTGTTACATACct
gi|12 : aattctgtataaatTACAATGT-GTTAACAAAACATT----GGTGAACAATAAT-AG-A-----------------------GAAA-GG-ATAAGAA-T------GAAAACATAAT----GCTTATAAAGTTCTTCTCCT----A--GTTAAAC-TATAATG--TAC----CCGTGGC-AAA-A-GTAAACTAATTCATATATAAATACGGGAAA-ATA--AAT-TAGC-ATAA-AAGAATAGAGA
gi|13 : catagtttatttctggatatttgATACAAAGT-GTAAACAAAACATT----GGTGAACAACAAT-AG-A-----------------------AAA-GGG-ATAAGAA-CTAATTTAAAAGCATAAT----GTTTGTGGTGTTCTTCTCCA----A--GTCATAC-TATAAAT--AACACAT----GGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAACGATAAa
gi|14 : ttaaacatcttatttctgaatttatGAAA--GC-GAC----GACATACTCTCGACAATAT-A-AATAGGTTTATT-TGAACC-T-TTCTGTG-CTCTT-TATAAAAGTATGAA-------CTGCATCGAAAATTGGAATATTTGTCTCAAAAGTCAAAATATTGTTCTCCACAGACAATAGTATCGAG------GTTTATATT------GT
gi|16 : gataaaggtgcagtagaG-ATAA-AA-C------GAAAGCACAAT----GCTTAAGAAGTTCTTCTCCT----A--ATCGTGC-TATAAGT--TACACA---G-GGC-ATA-A-GTGAACTAATTTATAAGTAAATATGTGAAATATACGAGTATAATGGTg
gi|17 : gtT-GAATTTGATAAGAA-AACTG-AAAATCAAT------GTGACACATGGGTTGAgttaaactgattgttacctatgtg
gi|17 : aATATGATATACTCTCCGCAATAT-GTGATAGCTCAATTCTAAAC---ATTTTGTG-TTCTT-TATAAAaaagttgaatatgatatactctccgcaatatgtgatagctcaattctaaacattttgtgttctttataaatgaag
gi|18 : atgaatttgataagaaaactgaaaatcaatgtgacacatgggttgaaaagttgaAACACAATGT-GTAAACAAAACATTTTTTGGTGA-CGATTAT-AG-A-----------------------AAAAGG--ATAATAA-C------GAAAGCATAAT----GCTtgaag
gi|19 : gtttaaatatatcttatttcggaatatatat-AATGGT--TA-TCACTGTTTCATACAGATGTGACA-G-TTTCT-T---TAAAATAA------------------A-AA-TA-GAAATAAATGTTGGGGTGACACA
gi|2 : atacataAATACAATGT-GTAAACAAAACATT----GGTGAACAATAAT-AG-AACAGATCAGTTCTTTAATAACAGAAAAGCA-ATAAGAA-C------G-------AAT----GCTTTTGAAATTCTTCT-------A--GTCGTATATATAAAT--GATACATTCGTAACAAAA-A-GTAAATTATTTTATACATAAACAGGTTAAC-ATA--ATT-TAGTGGTAATGAAAAGAGAAAGGTATGGTTAC-AATAGTG-TT-TTACTGATTGATATATACTTGATG-A-TTT-T-TTTCTAAAATAACCTT-GAATTTGA-AAGAA-AACTA-GCAATAATTGTTAGGGTTACACAGAAGTAGAGGGG-GAGGGG-GACCTGGTTGGGGGGGGAGGGGGGGGGGGGGGTTCGGGA--GC-GATA-ACTATATACTATCAACAATAT-A-GATAGGTCTACT-TGAATT-TGTTTTGTG-TTCTT-TATAAAAGTATGTA-------CTGCATCGAAAATTGGAATATTTCTCTC-AAAGTCCAAATGTTGTTCTCCAATGAGAGGAGTATTAAT------GTTTATATT------GTC--AGCCAGTGCGTTGA-AAA------GCCTCGCGACaattttaataacaaa
gi|20 : gATACAATGT-GTCAATAAAACATT----GATGAAAAATAATCAGTA-----------------------GAAAGGGAATAAGAA-C------GAAAACAGAAT----GTTTGTGAAATTC
gi|21 : tatttatatatATACAATGT-GGCAACAAAACATT----GATGTACAATAAT-AT-A-----------------------AAAA
gi|22 : attaaaaagcatgttagtttaaacatagtttatgcttcattaatgcACACAATGT-GTAAACAAAACACT----GGTGAATAATAa
gi|23 : tactatatgaaacatattttatacctgaatatatatataaatatatacacacTTTATACATAAATGTGTGAAA-ATA--AAT-CGATGATAATGAAAATATAAAGATATTATTAC-AA-AGTGTTT-TTGCTGATGGATGCA
gi|24 : tATGCAATGT-G---------CATT----TGTGAACTATACT-AG-A-----------------------A-AAGGG-AAAAGAA-
gi|3 : aacatattttattttttaatatatTACAACGT-GTTAACAAAACATC----ATTAACCAACAGT-AT-A-----------------------CATCGG--ATAAAAAAC------GAAAGCATTAT----GCTTATGAAATTCTTCTC------CTTGTCATAA-TATAAAT--TACACATTTATGGC-AAA-ATGTA---T--TTTATTCATAAATATGTGAAA-TTA--AAT-TAATGCTAGCGATATTAGAAAGATGTGATAACAAATGTCG-TTATTTCTGATTAATACATACGTGACA-G-TTTCT-T---TAAATTAACCATAAAATTTGA-ATGAACAATTA-GAAATACATGTTAGGGTGACACAGAGGT-GAAGAA-AAAAGCAGACttaat
gi|3 : AA--GCAGAC-TAC--TATATTATCAACAATATTA-GGTATTTCTACT-TTAATC--ATTTCGTA-TTCTT-TACGAAACTATTTG-------CTTCATCGAAAATTCTATTATTTGCCTC-AAAGTCAAAATGTCGTTCTCAAAAGAGAATGGACTTAAG------GTTTATTTT------GTtactatattatcaacaatattaggtatttctactttaatcatttcgtattctttacgaaactatttgcttcatcgaaaattctattatttgcctcaaagtcaaaatgtcgttctcaaaagagaatggacttaaggtttattttgtat
gi|30 : tacaacgtgttaacaaaacatcattaaccaacagtatacatcggataaaaaacgaaagcattatgcttatgaaattcttctccttgtcataatataaattacacatttatggcaaaatgtattttattcataaatatgtgaaattaaattaatgctagcgatattagaaagatgtgataacaaatgtcgttatttctgattaatacatacgtgacagtttctttaaattaaccataaaatttgaatgaacaattagaaatacatgttagggtgacacagaggtgaagaaaaA-C------GAGAGCATAAC----GCTCATGAAATTCTTCTC------at
gi|4 : TACGATATAGTCTCAACAATATCA-AATGTGTCTACC-TGAAG--TGTTTAGTG-TTCTT-TATAAAAGTATGAA-------CTGCATCGA----T----TATTTGTCTA-AAAGTCAAAATGTTGTTCTGCAAAGAGAAAAAAATTAAT------GTTTATATTATGCAAGTC--AGACAGTGCACTGA-AAAGCACTTGCCTCACGACcttg
gi|5 : aggtaaacATACAATGA-GTAAACAAA-CATT----GGTGAACAACTAT-AG-A-----------------------AAA-GGG-ATAAGAA-C------GAAAGTATAAT----GCTTATAGAG--CTTCGT------A--GTCGTTC-TATAAAT--TGCACAT----GGC-AAA-ATGGAAGTTAATTTGTACATAGATATCTGAAA-ATT--AAT-AAGTGACAATGAAAAGCGAAAGATATGATTTC-AATGGTA-TT-TAACTGACGGTTTCTTATGTGGTAGA-TTT-T-T---TAAAATAACTGT-GTGTTTGA-A-GAA-AACT----------TGTTAGGGTAACACAGGGGTAGAGGGGAGAAATC-GACtctatatttattacagcgaaaacaaagtgctatcagttttctatacacgagcgcagaggaggctcaaccgtatttttcaaaaacacgattttgattgagagatctacaactcgtacggagtctcgcaagctggacttgcttctttaccaaagttaaaatacttcgacactttacttt
gi|5 : taaacatattttatttatatAGGGGTAGAGGGGAGA----AA--TC-GACA-ACGATATACACTCAACAATAT-A-AACAGTTTCCCT-TAAGCaacgatatacactcaacaatataaacagtttcccttaagcaattgtat
gi|6 : taaacatattttatttatatatacaatgagtaaacaaacattggtgaacaactatagaaaagggataagaacgaaagtataatgcttatagagcttcgtagtcgttctataaattgcacatggcaaaatggaagttaatttgtacatagatatctgaaaattaataagtgacaatgaaaagcgaaagatatgatttcaatggtatttaactgacggtttcttatgtggtagattttttaaaataactgtgtgtttgaagaaaacttgttagggtaacacTACAATGT-GTAAACAAAACATT----GGTGGACAATACT-AG-A-----------------------AAAATGG-ATAATAA-C------GAAAGCATAATTAATGCCAATGAAGTTCTTCTCTTATTTA--GTCTTAC-TATAAATATTACACAT---------------------AATTTATA--TAAATATGTGAAA-ATA--AAT-CAAT--TAA-GAGA---GAAAGATACGATTAC-AATGCTG-T----A-TAATTG-TACA--CGTGATA-AATTT-TGT---TTAAATAACTAT-GAATTTGA-ATAAT-AATTA-GAAATAAATGTaattgtat
gi|7 : ctttaaacatatttcatttctgaatacatgATACAATGTTGTTAATGA--CAGT----GATGTACAAAAAT-AA-C-----------------------AAAAGG--ATATGAA-T------GAAAGCATAAT----GCTGAAGGAAATCTTCTC------ATAGTTATATATACAAAT--TATATATTTGTGGT-AAATA-ATAAACTGATTTATCAATAAGTATATGAAA-ATA--AAT-TAATGATAGTGAAAATAGAAGTGT-TTATCAC------TG-TT-TTA
gi|8 : taaacatatgttattttgcaatatatatTACAATGT-ATTACCCAAACACT----GGTGAACAATACT-AG-A-----------------------GAAA-GG-ATTAGGA-T------GAAAGCATAAT----GCATATAAAATTCT----------A--GTTGTAC-TATAAAT--TGCACATTTGTTGC-AAATT-GTAAACTGATTTATACATAAATATATGAAA-GTT--AAT-T-ATTATAGTGAAAATAGAAATCCATGATTAC-AAta
gi|9 : aaacatattttatttctcagtaactatatTATGATGAAATATCTGCAATAT-A---T-GATCTACT-TGAAA--TGTTTCGTG-TTCTTGTCAAAAAATGTGTAAACTCTTCTGCATGGAAAATTCGAATGTT------------CAATTTATT-TTCTCTAAAAAGAAATGAATCAAGATAAATGTTTTTTTA------ATC--AAACAGTGCGTTGATAAT-CACTTGACTTGCGAC
blockSeqs : T A TTTT C T ACAGATCAGTTCTTTAATAACAG GG GA A TAATTT TAAT TTATTTA A A AT CCGT A AC T C T CG A T G A T TA T T GA TTTTC CCT A T A C T T A A CA CC A . A AT G GTG G C CATG T . G A AACTCTT T AA A T ATAAAT ATGCAA . C T T GC
blockSeqs : . T . . . . AG G . . . CTA A A . TCGT . AT A T . . . T T . . C A G AA CTT CCA . . A . C . T . G TC A . . AT G TAG G . TTG T . . T . G A T T . . . A C . C
blockSeqs : . A . . . . AG G . . . CAA G . . TTAT . AT A C . . . T G . . A A T G CTT CTG . . A . C . A . C . G . . A T CAA C . CT T . . T . G A G T . . . A T .
blockSeqs : . A . . . . AG G . . . CTA G . . TTGT . TA A A . . . C T . . T A T A TGT CTA . . T . T . A . . . . T G AT G . CA C . . A . C A T A . .
blockSeqs : . A . . . . AG G . . . CTT A . . TTGT . TT A C . . . T T . . T A T G TT . . . T . C . . . . A G AA T . TG A . . T . C . A A . .
blockSeqs : . C . . . . CG A . . . ATA G . . G . A A C . . . T G . . T T . . . . . T . . G AG G . TG C . . . . . . A A .
blockSeqs : . C . . . . AT G . . . A T . . . . A A C . . . T T . . T . . . . . . . . AA T . A . . .
blockSeqs : . A . . . . AG G . . . A A . . . . A A C . . . . T . . . . A A .
blockSeqs : . T . . . . A G . . . A G . . . . A . A . . . . . .
blockSeqs : . A . . . . G G . . . . . . . . . . . C . . .
blockSeqs : . A . . . . G . . . . . . . .
blockSeqs : . T . . . . A . . . .
blockSeqs : . T . . . . . . . .
blockSeqs : . . . .
blockSeqCons : AG A** T* CTT**** ** AT AG** A*
originalCons : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-A-----------------------AAAAGGG-ATAAGAA-C------GAAAGCATAAT----GCTTATGAAATTCTTCTC------A--GTCGTAC-TATAAAT--TACACATTCGTGGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGATA-A-TTT-T-T---TAAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
finalCons : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-A-----------------------AAAAGGG-ATAAGAA-C------GAAAGCATAAT----GCTTATGAAATTCTTCTC------A--GTCGTAC-TATAAAT--TACACATTCGTGGC-AAAA--GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGATA-A-TTTCTT----TAAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATATAG--ATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTCA-AAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAAGCACTTGCCTTGCAACTCTATATTTTTTTAATGAATACAGGAAAAAAAATTAAATGCTGTGCGTGTTCCATAACACAACGCAGACACAAGAGAGACACAACCAGTTAACACTTGAAAAAAAAAATGATTGAGATGACTAGAACTTCGGTTCGGTGTTT
Unaligned ( gi|25 ): TCTAAAATTTGATCTTGGTTGAGAGAACTACATTTAGTTCGGAATCTCGCATGCTGAATTTAAATACTTCT
Unaligned ( gi|26 ): CGCATGGTCGTAGGAGCGTTTCAATTATTATTTGGGGGAGGGGGTGCTCCTACGCCTATGTT
Unaligned ( gi|27 ): AATGAATATTTTATACATGGCAGGAATATATTGTTACAATACTTATTCACA
Unaligned ( gi|28 ): TACACACGGTCGTAGGAGCGTTTCAATTACAATTATTTGGGA
Unaligned ( gi|29 ): TAACATTTTTATTTCTCAGTATATACATGTATATATA
Alignments
lowQualScore : 22222222222222222222222 333333333 22222 1 1111 111 11 1111 2222 1111111 11 111111 111111 11 1 11
lowQualScore : 2 1 5555 2 2 66666666666666666666666 4 9 2 2 888888 6666 555555555 1 7 55 66666 3 3 4 2 3 44 3 0 4 5 4 0 2222 3 55 111 99 666 5 5 7 5 2 5 0 6 8 00 99 1 99 6 99 6 0 4444 1 4 2222 2 5 5 0 0 3 8888888 6 44 1 1 666666 999999 33 1 7 0 66
lowQualScore : . . .... . . ....................... . . . . ...... .... ......... . . .. ..... . . . . . .. . . . . . . .... . .. ... .. ... . . . . . . . . . .. .. . .. . .. . . .... . . .... . . . . . . ....... . .. . . ...... ...... .. . . . ..
lowQualScore : 7 9 7777 9 9 44444444444444444444444 3 0 9 7 222222 1111 999999999 8 3 00 99999 6 6 5 2 3 66 3 4 7 5 0 1 4444 6 22 777 22 888 0 0 6 0 2 0 2 0 0 22 55 4 22 7 66 7 1 1111 9 4 4444 2 0 0 1 3 0 6666666 6 11 0 0 444444 222222 88 0 0 0 77
consensus : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-A-----------------------AAAAGGGA-TAAGAA-C------GAAAGCA----TAATGCTTATGAAATTCTTCTC------A--GTCGTAC-TATAA--ATTACACATTCGTGGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGATAG--TTTCTT--TAAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
Reference ( family-5905 ) : NAATACAATGT-GTNAACAAAACATT----GGTGAACAATAAT-AG-A-----------------------AAAAGGGA-TAAGAA-C------GAAAGCA----TAATGCTTATGAAATTCTTCTC------A--GTCGTAC-TATAA--ATTACACATTCGTGGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAATGATAATGAAAATAGAAAGATATGATTAC-AATGGTG-TT-TTACTGATTGATACATACGTGATAA--TTTCTT--TAAAATAACCGT-GAATTTGA-ANGAA-AACTA-GAAATAAATGTTAGGGTGACACAGGGGTAGAGGGG-GAAGGC-GACCTGGTTGGGGGGGGAGGGGTAGAGGGGGGATCGGAA--GC-GACATACGATATACTCTCAACAATAT-A-GATAGGTCTACT-TGAACC-TGTTTCGTG-TTCTT-TATAAAAGTATGNA-------CTGCATCGAAAATTNGAATATTTGTCTC-AAAGTCAAAATGTTGTTCTCCAAAGAGAANAGNATTAAG------GTTTATATT------GTC--AGNCAGTGCGTTGA-AAA-CACTTGCCTCGCGAC
gi|1 : ATACAATAT-GTTAACAAAACATG----AGTGCAAAATAAT-TG-A-----------------------AAT-TGGA-TAAGAC-C------AAAAGCA----TACTGTCTATGGCATTATTCTC------CTTGTCATAT-TACAA--ATTGCACATCTATGGC-AAA-A-----AGTAATCCATAGATACATATGTGAAA-TTA--AAT-TAATGG----GAAAA---AAAGATATGATTAC-AATGGTGGTTATTACTGATTGATACA---GT--TGC--TTACTT---AAACTAATCAT-GAATTTGA-ATTAA-AACCA-GAAATAAATGCTGGAATAAAACAAAGGTGGATGGG-AAAGGT-GAC
gi|1 : aaaacatactagttgatttctcaatacatataggcttAAGGTGGATGGGAAAGGT-GACATATTATATACTTTCAACAATGT-AAGAAATATCTACT-TGAACC-T-TTTCGTGTTTTTT-TATCAAAGTTTGAA-------CTGTATCCGAAATTGAAATATTTGTCTC--------AAATATTGTTTTCCAATGAGAATGCAATTTAG------GTTTATATT------GTCCAAGTCAGAGAA-TGA-AAA-atattatatactttcaacaatgtaagaaatatctacttgaaccttttcgtgtttttttatcaaagtttgaactgtatccgaaattgaaatatttgtctcaaatattgttttccaatgagaatgcaatttaggtttatattgtccaagtcagagaatgaaaattagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : aaaacatactagttgatttctcaatacatataggcttatacaatatgttaacaaaacatgagtgcaaaataattgaaattggataagaccaaaagcatactgtctatggcattattctccttgtcatattacaaattgcacatctatggcaaaaagtaatccatagatacatatgtgaaattaaattaatgggaaaaaaagatatgattacaatggtggttattactgattgatacagttgcttacttaaactaatcatgaatttgaattaaaaccagaaataaatgctggaataaaaca-GAATATGA-AAGAA-AATTATAAAATTAATGTTAGG-TGACACAGGGGTAGAGGGG-GGAttagtatcaaaacacaagaacagagaactgtttttttaaacaaataagtttgagagaattacaaatgcacggagcctcgcatatacgaccaaagtttaagagcttcggcactttactt
gi|10 : AGGGGTAGAGGGGGGACCAACA--AC-AATATAC-ATGTACTCTTAACAACAT-A-TATAGGTCTACT-TGAACCATGTT--GTG-TTCCT-T------------A-------CTGCATGAAAGATTTGAATATTTGTATC--AAGTCAAAATGTTGTTGTCCAAATGGTAAAATATTAAG------GTTTATATccaacaacaatatacatgtactcttaacaacatatataggtctacttgaaccatgttgtgttccttactgcatgaaagatttgaatatttgtatcaagtcaaaatgttgttgtccaaatggtaaaatattaaggtttatatct
gi|11 : gaatatgaaagaaaattataaaattaatgttaggtgacacATGCAATGT-ATAAACTAAACACT----GGTGAACAATAAT--G-T-----------------------AACGGGGA-TAAGA--C------GA---------TA-TG--TATG--------------------------C-TATGA--ATTCTACAT----GGC-AAA-ACGTATACTAATTTATACATAAATACGTGACA-ATA--AAT-AAGTGATAATGAAAAGAGAAAGACATGATTGC-AATGATG-TC-ACATAAATTGTTACATACct
gi|12 : aattctgtataaatTACAATGT-GTTAACAAAACATT----GGTGAACAATAAT-AG-A-----------------------GAAAGG-A-TAAGAA-T------GAAAACA----TAATGCTTATAAAGTTCTTCTCCT----A--GTTAAAC-TATAA--TGTAC----CCGTGGC-AAA-A-GTAAACTAATTCATATATAAATACGGGAAA-ATA--AAT-TAGC-ATAA-AAGAATAGAGA
gi|13 : catagtttatttctggatatttgATACAAAGT-GTAAACAAAACATT----GGTGAACAACAAT-AG-A-----------------------AAA-GGGA-TAAGAA-CTAATTTAAAAGCA----TAATGTTTGTGGTGTTCTTCTCCA----A--GTCATAC-TATAA--ATAACACAT----GGC-AAA-A-GTAAACTAATTTATACATAAATATGTGAAA-ATA--AAT-TAACGATAAa
gi|14 : ttaaacatcttatttctgaatttatGAAA--GC-GAC----GACATACTCTCGACAATAT-A-AATAGGTTTATT-TGAACC-T-TTCTGTG-CTCTT-TATAAAAGTATGAA-------CTGCATCGAAAATTGGAATATTTGTCTCAAAAGTCAAAATATTGTTCTCCACAGACAATAGTATCGAG------GTTTATATT------GT
gi|16 : gataaaggtgcagtagaGA-TAA-AA-C------GAAAGCA----CAATGCTTAAGAAGTTCTTCTCCT----A--ATCGTGC-TATAA--GTTACACA---G-GGC-ATA-A-GTGAACTAATTTATAAGTAAATATGTGAAATATACGAGTATAATGGTg
gi|17 : gtT-GAATTTGATAAGAA-AACTG-AAAATCAAT------GTGACACATGGGTTGAgttaaactgattgttacctatgtg
gi|17 : aATATGATATACTCTCCGCAATAT-GTGATAGCTCAATTCTAAAC---ATTTTGTG-TTCTT-TATAAAaaagttgaatatgatatactctccgcaatatgtgatagctcaattctaaacattttgtgttctttataaatgaag
gi|18 : atgaatttgataagaaaactgaaaatcaatgtgacacatgggttgaaaagttgaAACACAATGT-GTAAACAAAACATTTTTTGGTGA-CGATTAT-AG-A-----------------------AAAAGG-A-TAATAA-C------GAAAGCA----TAATGCTtgaag
gi|19 : gtttaaatatatcttatttcggaatatatat-AATGGT--TA-TCACTGTTTCATACAGATGTGACAG--TTTCTT--TAAAATAA------------------A-AA-TA-GAAATAAATGTTGGGGTGACACA
gi|2 : atacataAATACAATGT-GTAAACAAAACATT----GGTGAACAATAAT-AG-AACAGATCAGTTCTTTAATAACAGAAAAGCAA-TAAGAA-C------G-----------AATGCTTTTGAAATTCTTCT-------A--GTCGTATATATAA--ATGATACATTCGTAACAAAA-A-GTAAATTATTTTATACATAAACAGGTTAAC-ATA--ATT-TAGTGGTAATGAAAAGAGAAAGGTATGGTTAC-AATAGTG-TT-TTACTGATTGATATATACTTGATGA--TTTTTTTCTAAAATAACCTT-GAATTTGA-AAGAA-AACTA-GCAATAATTGTTAGGGTTACACAGAAGTAGAGGGG-GAGGGG-GACCTGGTTGGGGGGGGAGGGGGGGGGGGGGGTTCGGGA--GC-GATA-ACTATATACTATCAACAATAT-A-GATAGGTCTACT-TGAATT-TGTTTTGTG-TTCTT-TATAAAAGTATGTA-------CTGCATCGAAAATTGGAATATTTCTCTC-AAAGTCCAAATGTTGTTCTCCAATGAGAGGAGTATTAAT------GTTTATATT------GTC--AGCCAGTGCGTTGA-AAA------GCCTCGCGACaattttaataacaaa
gi|20 : gATACAATGT-GTCAATAAAACATT----GATGAAAAATAATCAGTA-----------------------GAAAGGGAATAAGAA-C------GAAAACA----GAATGTTTGTGAAATTC
gi|21 : tatttatatatATACAATGT-GGCAACAAAACATT----GATGTACAATAAT-AT-A-----------------------AAAA
gi|22 : attaaaaagcatgttagtttaaacatagtttatgcttcattaatgcACACAATGT-GTAAACAAAACACT----GGTGAATAATAa
gi|23 : tactatatgaaacatattttatacctgaatatatatataaatatatacacacTTTATACATAAATGTGTGAAA-ATA--AAT-CGATGATAATGAAAATATAAAGATATTATTAC-AA-AGTGTTT-TTGCTGATGGATGCA
gi|24 : tATGCAATGT-G---------CATT----TGTGAACTATACT-AG-A-----------------------A-AAGGGA-AAAGAA-
gi|3 : aacatattttattttttaatatatTACAACGT-GTTAACAAAACATC----ATTAACCAACAGT-AT-A-----------------------CATCGG-A-TAAAAAAC------GAAAGCA----TTATGCTTATGAAATTCTTCTC------CTTGTCATAA-TATAA--ATTACACATTTATGGC-AAA-ATGTA---T--TTTATTCATAAATATGTGAAA-TTA--AAT-TAATGCTAGCGATATTAGAAAGATGTGATAACAAATGTCG-TTATTTCTGATTAATACATACGTGACAG--TTTCTT--TAAATTAACCATAAAATTTGA-ATGAACAATTA-GAAATACATGTTAGGGTGACACAGAGGT-GAAGAA-AAAAGCAGACttaat
gi|3 : AA--GCAGAC-TAC--TATATTATCAACAATATTA-GGTATTTCTACT-TTAATC--ATTTCGTA-TTCTT-TACGAAACTATTTG-------CTTCATCGAAAATTCTATTATTTGCCTC-AAAGTCAAAATGTCGTTCTCAAAAGAGAATGGACTTAAG------GTTTATTTT------GTtactatattatcaacaatattaggtatttctactttaatcatttcgtattctttacgaaactatttgcttcatcgaaaattctattatttgcctcaaagtcaaaatgtcgttctcaaaagagaatggacttaaggtttattttgtat
gi|30 : tacaacgtgttaacaaaacatcattaaccaacagtatacatcggataaaaaacgaaagcattatgcttatgaaattcttctccttgtcataatataaattacacatttatggcaaaatgtattttattcataaatatgtgaaattaaattaatgctagcgatattagaaagatgtgataacaaatgtcgttatttctgattaatacatacgtgacagtttctttaaattaaccataaaatttgaatgaacaattagaaatacatgttagggtgacacagaggtgaagaaaaA-C------GAGAGCA----TAACGCTCATGAAATTCTTCTC------at
gi|4 : TACGATATAGTCTCAACAATATCA-AATGTGTCTACC-TGAAG--TGTTTAGTG-TTCTT-TATAAAAGTATGAA-------CTGCATCGA----T----TATTTGTCTA-AAAGTCAAAATGTTGTTCTGCAAAGAGAAAAAAATTAAT------GTTTATATTATGCAAGTC--AGACAGTGCACTGA-AAAGCACTTGCCTCACGACcttg
gi|5 : aggtaaacATACAATGA-GTAAACAAA-CATT----GGTGAACAACTAT-AG-A-----------------------AAA-GGGA-TAAGAA-C------GAAAGTA----TAATGCTTATAGAG--CTTCGT------A--GTCGTTC-TATAA--ATTGCACAT----GGC-AAA-ATGGAAGTTAATTTGTACATAGATATCTGAAA-ATT--AAT-AAGTGACAATGAAAAGCGAAAGATATGATTTC-AATGGTA-TT-TAACTGACGGTTTCTTATGTGGTAG--ATTTTT--TAAAATAACTGT-GTGTTTGA-A-GAA-AACT----------TGTTAGGGTAACACAGGGGTAGAGGGGAGAAATC-GACtctatatttattacagcgaaaacaaagtgctatcagttttctatacacgagcgcagaggaggctcaaccgtatttttcaaaaacacgattttgattgagagatctacaactcgtacggagtctcgcaagctggacttgcttctttaccaaagttaaaatacttcgacactttacttt
gi|5 : taaacatattttatttatatAGGGGTAGAGGGGAGA----AA--TC-GACA-ACGATATACACTCAACAATAT-A-AACAGTTTCCCT-TAAGCaacgatatacactcaacaatataaacagtttcccttaagcaattgtat
gi|6 : taaacatattttatttatatatacaatgagtaaacaaacattggtgaacaactatagaaaagggataagaacgaaagtataatgcttatagagcttcgtagtcgttctataaattgcacatggcaaaatggaagttaatttgtacatagatatctgaaaattaataagtgacaatgaaaagcgaaagatatgatttcaatggtatttaactgacggtttcttatgtggtagattttttaaaataactgtgtgtttgaagaaaacttgttagggtaacacTACAATGT-GTAAACAAAACATT----GGTGGACAATACT-AG-A-----------------------AAAATGGA-TAATAA-C------GAAAGCATAATTAATGCCAATGAAGTTCTTCTCTTATTTA--GTCTTAC-TATAAATATTACACA---------------------TAATTTAT--ATAAATATGTGAAA-ATA--AAT-CAAT--TAA-GAG---AGAAAGATACGATTAC-AATGCTG-----TA-TAATTG-TAC--ACGTGATAAATTTTGTT--T-AAATAACTAT-GAATTTGA-ATAAT-AATTA-GAAATAAATGTaattgtat
gi|7 : ctttaaacatatttcatttctgaatacatgATACAATGTTGTTAATGA--CAGT----GATGTACAAAAAT-AA-C-----------------------AAAAGG-A-TATGAA-T------GAAAGCA----TAATGCTGAAGGAAATCTTCTC------ATAGTTATATATACAA--ATTATATATTTGTGGT-AAATA-ATAAACTGATTTATCAATAAGTATATGAAA-ATA--AAT-TAATGATAGTGAAAATAGAAGTGT-TTATCAC------TG-TT-TTA
gi|8 : taaacatatgttattttgcaatatatatTACAATGT-ATTACCCAAACACT----GGTGAACAATACT-AG-A-----------------------GAAAGG-A-TTAGGA-T------GAAAGCA----TAATGCATATAAAATTCT----------A--GTTGTAC-TATAA--ATTGCACATTTGTTGC-AAA-TTGTAAACTGATTTATACATAAATATATGAAA-GTT--AAT-T-ATTATAGTGAAAATAGAAATCCATGATTAC-AAta
gi|9 : aaacatattttatttctcagtaactatatTATGATGAAATATCTGCAATAT-A---T-GATCTACT-TGAAA--TGTTTCGTG-TTCTTGTCAAAAAATGTGTAAACTCTTCTGCATGGAAAATTCGAATGTT------------CAATTTATT-TTCTCTAAAAAGAAATGAATCAAGATAAATGTTTTTTTA------ATC--AAACAGTGCGTTGATAAT-CACTTGACTTGCGAC
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AAAGCACTTGCCTTGCAACTCTATATTTTTTTAATGAATACAGGAAAAAAAATTAAATGCTGTGCGTGTTCCATAACACAACGCAGACACAAGAGAGACACAACCAGTTAACACTTGAAAAAAAAAATGATTGAGATGACTAGAACTTCGGTTCGGTGTTT
Unaligned ( gi|25 ): TCTAAAATTTGATCTTGGTTGAGAGAACTACATTTAGTTCGGAATCTCGCATGCTGAATTTAAATACTTCT
Unaligned ( gi|26 ): CGCATGGTCGTAGGAGCGTTTCAATTATTATTTGGGGGAGGGGGTGCTCCTACGCCTATGTT
Unaligned ( gi|27 ): AATGAATATTTTATACATGGCAGGAATATATTGTTACAATACTTATTCACA
Unaligned ( gi|28 ): TACACACGGTCGTAGGAGCGTTTCAATTACAATTATTTGGGA
Unaligned ( gi|29 ): TAACATTTTTATTTCTCAGTATATACATGTATATATA