lowQualScore : 1111111111111111111 22222222222222222222222222222222222222222222222
lowQualScore : 1 1 1 333333 11 7777777777777777777777777777777777777 333333333333 4444444444444444444 2 2 1 22222222222222222222222222222222222222222222222 1 1 3333333333333 22 22 11 1 1 2222 1 222 22222 1 1 1 1 333333333 1 2222222222222222 11111 222 1111 22222222222222 1111 4444444444444444444444444444444444444444 1
lowQualScore : 7 1 4 0 3 888888 2 6 6 6 00 7777777777777777777777777777777777777 3 3 2 6 666666666666 4 3 4 3333333333333333333 3 0 4 6 3 77777777777777777777777777777777777777777777777 8 3 1 6 5 8 4 6 2 0 0 4 2 0000000000000 00 9 6 11 33 4 6 0 4 3 4 8888 3 6 7 777 6 8 22222 1 0 1 9 9 2 6 7 1 1 5 8 1 1 6 333333333 1 99 1 3 1 5 5 5 00 8888888888888888 33333 000 66 0000 6 5 66666666666666 7 77 0 4444 5555555555555555555555555555555555555555 6 5
lowQualScore : . . . . . ...... . . . . .. ..................................... . . . . ............ . . . ................... . . . . . ............................................... . . . . . . . . . . . . . ............. .. . . .. .. . . . . . . .... . . . ... . . ..... . . . . . . . . . . . . . . . ......... . .. . . . . . . .. ................ ..... ... .. .... . . .............. . .. . .... ........................................ . .
lowQualScore : 0 5 0 5 0 333333 5 0 0 0 00 5555555555555555555555555555555555555 0 0 5 0 000000000000 0 0 0 5555555555555555555 0 0 0 7 3 00000000000000000000000000000000000000000000000 3 7 0 0 0 3 7 7 3 7 7 0 5 3333333333333 33 7 0 00 55 0 0 5 0 0 0 3333 3 7 0 777 0 0 66666 2 7 7 2 1 1 0 0 6 4 7 1 7 0 7 777777777 7 22 7 2 9 7 3 1 66 1111111111111111 88888 444 44 6666 5 0 44444444444444 3 99 7 3333 0000000000000000000000000000000000000000 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAATGAAAAATACCGTCATATTCCCNTATNAATTACANAGTACAGAACTTAGANCAACAAAAAATGCAAAATACCT------ANGCGCCACACTCAGTCATGNCTTCAACTTCTCAANNCACATTTGGTAATGTGGCATCCAAGNCNAACANCACNCTCAAACTTATTGAGCGAGACGNACAAACNANTGATAAAGAAATTAAAGAAAC--CCTACAACACTTATTGTNAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAATCATACAAANTAGAAAGAGTACAGAGGGCAGCAGCTAGATACGTACTNAATAATTACGATTTTACAAGCAGTGTCNCCNAGATNGNATCAAAT-TTAAAC-TGGCAAACCCTTCATCAGAGAAGAANNAACNCATCACTCATCNTNCTNTNTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACCACCATCTAATTCCAATAAAAAAT-CTAAAT--TNTCATGTNCCTTTTTCTCGAACCCTATATCATCAGAACTCGTTCTTCCCTAGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTCAATCAGTTTACGGCTGGTCTG-GC--CA--GTAAAATTCTAAA--CAAGTCTTG-TTTTTAACACTAGAAATGTAG----TT-A--------TTTTTAAATGAAA----ATAT--ATGTATAGCTT----TGTTGTTTTT-AAA--TTTCAT-ATATCATATTTCA--TTTTTTACTATTTCTTTTGCTGTTCC-C-CGACAGCGCCTCCCAGTAATAATCAGAAATTGATTGTTGCTAGCAATATGAAGATGTAG
Reference ( gi|1 ) : CACCATAGTGTACCTAACAATAAATACAATATCTGATCCCCAAATTCTCCAAAATGATCTTAACACCATAGAAAATTCGGAAGAAAACTGGTGTATAGAATTCAATGCAGATAAATGTGAAATCAGAAGAATAACAAAAAAGAAAAATACCGTCATATTCCCTTATAAATTACAGAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGTGTCACACTCAGCCACGATTTTAATTTCTCAACACATATA-GACAACATAACATCAAAAGCAAACAACACCCTTAAATTCATTAAACGTTACATACAAACAAATAATAAAAAGATGAAAGAAACGGCATACAACACCTAT-GTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAAACATACAAAGTAGAAAGAATACAAAGGGAAGCAGCTTGATATGTACTCAATAATTATGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAATCTTAAAA-TGGCAAATCCTCCATCAAAGACAAATAAATTCATCACTAATCCTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACAACCATCTAATCCGAATAAAAAAT-CTAAAT--TTTCATGTACCTTTTTCTCGGACCCTATAGCATCAGAACTCATTCTTCCCCAGAACAACTAGAAATTGGAAAAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTAAATCAGTTTATGGTTGGTCTG-GC--CA--GTTAAATTCTAAA--CAAGTCTTG-TTTTTAACACTATAAATGTAG----TT-A--------TTTTTAAATGAAA----GTAA--ATGTATGACTT----TGTTGTTTTT-AAA--TTTCAT-ATATCATGTTTCA--TTTTTTACTATTTCTTTTGCTGTTCC-C-TGACAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAGGTTTAGTCTG
gi|16 : ACAAAAATGAAAAATACCGTCATATTCCCCTATAAATTACACAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------A
gi|2 : CCCATATTAATTACAAAGTACAGAACTTAGACCAACAAAAAGTGCAGTGCACTTCTCTAGAGGCGCCACACTCAGTCATGACTTTA------CAAATCACATT-GGTAATGTAGCATCCAAGTCAAACACCACCCTCAAAC-----GAACGAGACGTACAAACAATTAATAAAGAAATTAAAG------CCTACAACACTTAT-GTAAGACCACAATTAGTAAAC-TGCTCCTCTGTCTGGCA--------------------------AAA-ATACACAATCATACAAACTAGAAAGAGTACAGAGGGCAGCTGCTAGATACATGCTAAATAATTATTATATTACAAGCAGTGTCTCCAAAA-AGAATC-AATC-TAAAC-TAGCAAAACCTTTATCAAAGAAGAAGGAACACATCACTCATCTTATTGTATAAAATAAAATACCAACCAATCTAGCTGCTGTACAT--CAACCATCTAATTCTAATAAAATTT-CTAAAA--TGTCATGTTCCCTTTTCTCGAATCTT-TACCATCACAGCTC--CCT--CCTAGAACATTTAGAAATTGGAATGGCATCCC-----------AAGCCAAGTACCAGTCTCAATCAATTTAtg
gi|5 : ACAAAAAATGCAAAATACCT------ATGTc
gi|8 : GTCATGTCTTCAACTTCTCAACAC-TATTTGATAATATG---------GCCAATAACACACTCAAATTTATTAAGCGAAACAAACAAACCAATGATAA----------GAAAC----TACAACAC-TATTGTTAGACCACCATTAGAATAC-TA------------GTACTGCTCCTTTATCAGACATTCCTGACAAAAG-ACACAATCACACAAAATAGAAAGAGTACAGAGGGCAGTAGCTAGATAAGTATTGAATacttttttctcggacactatatcatcagaacgcgttcttccctagaacaattagaaattggaatagcctaccaagatgtgttaaagccattaccagcctaaatcagtttatggttggtctggccacagtaaaattctaaacaagtcttgtttttatcactagaattgtaattatttttaaatgaaagtatatgtataactttgttgtttttaaatttcacatatcatatttcattttttactattttttttgctgttcctcgacaacgcctcccagtaataatatgtagatgtagacatatttatctgaa
gi|13 : AGACAA-AATGAAAATATATG-------------------------------------------A-G-ACACAAACATACAAAGTAGAAAGAATACAGAATGCAGCAGCTTCATATGTACTCAATAAGTA-GACTTCACAAACA
gi|19 : TTACGATTTTACCAGCAGTGTCACTCAGATTGTA-CAGAT-TTAAAATTGGCAAACCCT
gi|3 : AATATTAAAC-TGGCAAGCCCTTCATCAGAGAAGAATCAATTCATTACTTATCGTTCTTTTTAAAATAGAA----AA-CAACATAGTTGCTGTAGATCACCTCTATTTAATT--AAAAAAAAAT-CTAAAA--TATGATGTACATTTTTCTCGGACCCTGTATCATCAGAACTTCTTCTTCCCTAGAACAATTACAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTATCAGCCTAAATCAGTTTAT-GTTGGTTTGCACA-CA--GTCAAGTTCTAAA--CAAGTCTTG-ATTTTAACACTAGAAATGTAG----TA-A--------TTTTTAAATGAAA----ATAT--ATGTATAGCTT----TTTTGTTTTTAAAA--TTTCAT-ATATCATATTTCATTTTTTTTTCTATTTCCTTTGCTTTTCC-C-CGACAGC
gi|4 : TGAAATAACA----AA-TAACCTAGTTGCTGTAGATCACCACCATCAAATCTCAATACAAA-T-CTCACT--GACCACTT-CCTTTTTCTCGAACCCTATATGACCAGAACCCATTCTTCCGTAGAACAATCCGAAATTGGAATAGCCTCCCAAGTTATGTTAAAGTC-AGTACCAGCCTCGATCAGTTTACGGCTGGTTTG-GC--CACTATAAAATTCTAAA--CAAGTCCAGTTTTTTTATATTATAATTATAG----TTCA--------GTTTTAAATGAA------TAAACATGTATAGCTT----TGTTGTTTTT-AAAG-TTTTAA-AT-T--TATTTCA--TTTTTTACTATTATTTTTACTGTTTC-C-AGATAGCgcctcccagtaataatcagaaattgtttgttgggagtagtatgtagatgta
gi|5 : ACAAAAAATGCAAAAT--ACCTATGTACTTTTTTCTCGGACACTATATCATCAGAACGCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGATGTGTTAAAGCC-ATTACCAGCCTAAATCAGTTTATGGTTGGTCTG-GC--CACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTATCACTAGAATTGTAA----TT-A--------TTTTTAAATGAAA----GTAT--ATGTATAACTT----TGTTGTTTTT-AAA--TTTCAC-ATATCATATTTCA--TTTTTTACTATTTTTTTTGCTGTTCC-T-CGACAAC
gi|7 : ATAAAGAAT-TTAAATATTTTCATGTTCCTTTTTCTCGAACCATATA-------------TTCTTCCT-AGAACAATCAGAAATTGGAATAGCCTACCAAGTTTTAT-AAAGCC-AGTACCAGCCTCAGTCAGTTTACGGCTGATCTT-GC--CA----CAG----TAAA--C---------TTCTTAA------AAATGTAA-------A--------TATTTAAATGAAA----ATAT--ATGTATAGCTT----TGTTG-TTTT-AAA-----------ACCATAATTCA--TTTTTCACCATTTCTTTTTCTGTTCCGC-AGACAGTGCCTCCCAGTAATAATCAGAAATTGATTGTTGCTAGCAATATGAAGATGTAGgcctcccagtaataatatgtagatgtagacatatttatctgaa
gi|6 : TTTTCTTGAACCCAATATCATCAGAACTCGTTCTTCCAAAGAACAATCCGAAATTGGAATAGCCTATCAGGTTGTGCTAAATCC-AGTACCAGCCTCAATCAGTTAACGGCTGGTCTG-CCCACA--GTAAAATTCTAAA--CGAGTTTAG-CCTTTAAAACTAGAAATGTAGATATTT-AATAATATTTTTTTAAATGAAA----ATAT--ATGTATAGCTC----TGTTGTTTTT-AAA-----CA-------ATATTTCA--TTTTTTACTCTTTTATTTGCTGTTTC-C-CGACAGCa
gi|14 : CATCAGAACTCATTCTTCCCTAAAACAATTAGAAATTGGAATAGCCTTCCAAGTTGTGTTAAAGCC-AGTACCAGTCTCAGTCAGTTTACGgcccccagcaataatcaaattgattaatgggagtcatatgtagatgta
gi|9 : cAGTTAATTTACAGCTGGTCTG-GCCTCA--GTAAAATTCTAAAATCAGG-CCTG-TTAT--ATACTA-A-------------------------TTTAAATGAGACAATATAC--ATGTATAAAATATAGTTTTGATTTT-AAACCCTTCATCATTTCATt
gi|15 : TG-TTTTTAACACTAGACATGTAG----TT-A--------TTTTTAAATAAAA----GTAT--ATGTATAACTT----TGTTGTTTTT-AAA--TTTCAT-ATATCATATTTCA--TTTTtgacatgtttacaacacctcgcagttatgatcagtaattgattgttggagtaccatgtagatgtag
gi|12 : AAATATAG----TT-A--------TTTCTAAATGAAA----ATAT--ATGTATAGCTT----TGTTG---TT-ACA--TTTTA--A----------------TTTTACTATTTCTTTTGCT-TTCC-CAGGACAG
gi|18 : TTTCTTTCGCTGTTCC-T-TGACAGCtgtcttccagcaaag
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TTTTAAATCAAAATAGAGGACATAGTTTTCTTGTTGATTTTAAACCAGTCTTCATTTTCTAATGTCCCTCGACAGCGCCTCCCAGTTATAATCAGTAACTGACTGCTGGGAGCACCATGTAGATATA
Unaligned ( gi|11 ): GAAATAAAAACGGCCTACATCACCAATGTAAGTCTGATTGTCTGTCTGGCATCTCTAGCAAACCTCACAATCACGCAAACAAATGAAAGGGTATAGAGGGCA
Unaligned ( gi|17 ): TTTTGCTTTCGCTGTTCCCTGACAGTGCCACTCAGTTATAACAAGCAATTGATTGTTGGGACCTGAGCACCATGTAG
Unaligned ( gi|20 ): CCTCCCAGTAGTCATCAGAAATTGATGTATGGGAGTATTATGTAGATGTATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 333333 11 2 11111111 111 4444444444444444444 2 11111111111111111111111111111111111111111111111 11 1 22 2 1 2222 1 11 111 222222 1111111111111111 11111111111 3333333 1
lowQualScore : 4 1 1 1 0 0 1 888888 1 1 0 11 22 88 3 0 0 0 88888888 1 1 1 222 0 0 3 11 1 1 0 1111111111111111111 7 3 1 2 8 99999999999999999999999999999999999999999999999 1 1 11 4 4 1 0 1 11 0 11 1 7 7 0 0 0 0 0 22 11 3 1 1 1 1 1111 0 55 33 3 333 1 6 1 0 8 2 0 0 5 5 666666 77 1 0 5 00 0 0 6666666666666666 8888 4 0 99 88888888888 55 3 888 7777 0 4 2222222 0 4 1
lowQualScore : . . . . . . . ...... . . . .. .. .. . . . . ........ . . . ... . . . .. . . . ................... . . . . . ............................................... . . .. . . . . . .. . .. . . . . . . . . .. .. . . . . . .... . .. .. . ... . . . . . . . . . . ...... .. . . . .. . . ................ .... . . .. ........... .. . ... .... . . ....... . . .
lowQualScore : 0 0 0 0 7 7 0 333333 0 0 7 00 00 00 7 7 7 7 77777777 0 0 0 000 7 7 7 77 0 0 7 3333333333333333333 3 7 0 5 0 66666666666666666666666666666666666666666666666 4 0 00 0 2 0 5 0 77 7 33 0 3 3 0 0 2 2 7 00 77 7 0 0 0 0 2222 0 00 00 5 222 0 7 0 1 5 5 2 1 0 7 000000 99 4 5 0 44 2 2 8888888888888888 5555 0 8 66 22222222222 55 6 555 7777 6 4 7777777 1 7 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAANGAAAAATACCGTCATATTCCCNTATAAATTACANAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGCGCCACACTCAGTCACGACTTTAACTTCTCAACACATATT-GATAATATAGCATC-AAG-CAAACAACACCCTCAAATTCATTAAACGANACGTACAAACAAATAATAAAGAGAT-AAAGAAAC--C-TACAACACTTAT-GTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAATCATACAAANTA--GAAAGAGTACAGAGGGCAGCAGCTNGATACGTACTNAATAATTACGACTTCACAAGCAGTGTCACTCAAAT-GTATCAAAT-TT-AAACTGGCAAACCCTTCATCAAAGAAGAATNAATTCATCACTNATCNTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACCACCATCTAATCCNAATAAAAAATCTAAAN--TNTC-ATGTNCCTTTTTCTCGGACCCTATATCATCAGAACTCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTCAATCAGTTTACGGCTGGTCTG-GC--CAC-GTAAAATTCTAAA--CAAGTCTTG-TTTTTAACACTAGAAATGTAG----TT-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TG----GG-AGTANTATGTAGATGTAG
Reference ( family-5839 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAATGAAAAATACCGTCATATTCCCNTATNAATTACANAGTACAGAACTTAGANCAACAAAAAATGCAAAATACCT------ANGCGCCACACTCAGTCATGNCTTCAACTTCTCAANNCACATTTGGTAATGTGGCATCCAAGNCNAACANCACNCTCAAACTTATTGAGCGAGACGNACAAACNANTGATAAAGAAATTAAAGAAAC--CCTACAACACTTATTGTNAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAATCATACAAANTA--GAAAGAGTACAGAGGGCAGCAGCTAGATACGTACTNAATAATTACGATTTTACAAGCAGTGTCNCCNAGATNGNATCAAAT-TT-AAACTGGCAAACCCTTCATCAGAGAAGAANNAACNCATCACTCATCNTNCTNTNTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACCACCATCTAATTCCAATAAAAAATCTAAAT--TNTC-ATGTNCCTTTTTCTCGAACCCTATATCATCAGAACTCGTTCTTCCCTAGAACAATCAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTCAATCAGTTTACGGCTGGTCTG-GC--CA--GTAAAATTCTAAA--CAAGTCTTG-TTTTTAACACTAGAAATGTAG----TT-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TG----CT-AGCAATATGAAGATGTAG
gi|1 : ACAAAAAAGAAAAATACCGTCATATTCCCTTATAAATTACAGAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGTGTCACACTCAGCCACGATTTTAATTTCTCAACACATATA-GACAACATAACATCAAAAGCAAACAACACCCTTAAATTCATTAAACGTTACATACAAACAAATAATAAAAAGATGAAAGAAACGGCATACAACACCTAT-GTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAAACATACAAAGTA--GAAAGAATACAAAGGGAAGCAGCTTGATATGTACTCAATAATTATGACTTCACAAGCAGTGTCACTCAAAT-GTATCAAATCTT-AAAATGGCAAATCCTCCATCAAAGACAAATAAATTCATCACTAATCCTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACAACCATCTAATCCGAATAAAAAATCTAAAT--TTTC-ATGTACCTTTTTCTCGGACCCTATAGCATCAGAACTCATTCTTCCCCAGAACAACTAGAAATTGGAAAAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTAAATCAGTTTATGGTTGGTCTG-GC--CA--GTTAAATTCTAAA--CAAGTCTTG-TTTTTAACACTATAAATGTAG----TT-A--------TTTTTAAATGAAA----GTAAATG-TATGACTTTGTTGTTTTT-AAA-TTTCATATATCATGTTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-T-GACAGCANNNNNNNNNN----NNNNNNNNNNNNNNNNNNN-NN----NN-NNNNNNATGAAGGTTTAG
gi|10 : caccatagtgtacctaacaataaatacaatatctgatccccaaattctccaaaatgatcttaacaccatagaaaattcggaagaaaactggtgtatagaattcaatgcagataaatgtgaaatcagaagaataTTTTAAATCAAA----ATAGAGGACATAGTTTTCTTGTT-----GA-TTT--TAAACCAGTCTTCA--TTTTCTA--AT-----------GTCCCT-C-GACAGCGCCTCCCAGTT----ATAATCAGTAACTGACTGC-TG----GG-AGCACCATGTAGATATAtctg
gi|11 : C-TA------------GCA--------------------------AAC-C-TCACAATCACGCAAACAAATGAAAGGGTATAGAGGGCA
gi|12 : gaaataaaaacggcctacatcaccaatgtaagtctgattgtctgtctggcatctAAATATAG----TT-A--------TTTCTAAATGAAA----ATATATG-TATAGCTTTGTTGTT-------------------ACATTTTA---ATTTTACTATTTCTTTTGC-T-TTCCCAG-GACAGTGTCTTCCAGCA----A
gi|13 : AGACAA-AATGAAAATATATG-------------------------------------------A-G-ACACAAACATACAAAGTA--GAAAGAATACAGAATGCAGCAGCTTCATATGTACTCAATAAGTA-GACTTCACAAACAag
gi|14 : CATCAGAACTCATTCTTCCCTAAAACAATTAGAAATTGGAATAGCCTTCCAAGTTGTGTTAAAGCC-AGTACCAGTCTCAGTCAGTTTACG
gi|15 : cTG-TTTTTAACACTAGACATGTAG----TT-A--------TTTTTAAATAAAA----GTATATG-TATAACTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTt
gi|16 : ACAAAAATGAAAAATACCGTCATATTCCCCTATAAATTACACAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------ATG
gi|17 : TTGCTTTCGC-TGTTCCC-T-GACAGTGCCACTCAGTT----ATAACAAGCAATTGATTGT-TGGGACCTGAGCACCATGTAG
gi|18 : ttTTTCTTTCGC-TGTTCCT-T-GACAGCGCCTCCCAGTATTATATAATCAGAAATTGATTGT-TG----GG-AGTAATATGTAGA
gi|19 : TTACGATTTTACCAGCAGTGTCACTCAGATTGTA-CAGAT-TTAAAATTGGCAAACCCT
gi|2 : CCCATATTAATTACAAAGTACAGAACTTAGACCAACAAAAAGTGCAGTGCACTTCTCTAGAGGCGCCACACTCAGTCATGACTTTA------CAAATCACATT-GGTAATGTAGCATCCAAGTCAAACACCACCCTCAAAC-----GAACGAGACGTACAAACAATTAATAAAGAAATTAAAG------CCTACAACACTTAT-GTAAGACCACAATTAGTAAAC-TGCTCCTCTGTCTGGCA--------------------------AAA-ATACACAATCATACAAACTA--GAAAGAGTACAGAGGGCAGCTGCTAGATACATGCTAAATAATTATTATATTACAAGCAGTGTCTCCAAAA-AGAATC-AAT-CT-AAACTAGCAAAACCTTTATCAAAGAAGAAGGAACACATCACTCATCTTATTGTATAAAATAAAATACCAACCAATCTAGCTGCTGTACATCA--ACCATCTAATTCTAATAAAATTTCTAAAA--TGTC-ATGTTCCCTTTTCTCGAATCTT-TACCATCACAGCTC--CCT--CCTAGAACATTTAGAAATTGGAATGGCATCCC-----------AAGCCAAGTACCAGTCTCAATCAATTTAC
gi|20 : CCTCCCAGTA----GTCATCAGAAATTGA-TGTATG----GG-AGTATTATGTAGATGTA
gi|3 : AATATT-AAACTGGCAAGCCCTTCATCAGAGAAGAATCAATTCATTACTTATCGTTCTTTTTAAAATAGAA----AA-CAACATAGTTGCTGTAGATCACCTCTATTTAATT--AAAAAAAAATCTAAAA--TATG-ATGTACATTTTTCTCGGACCCTGTATCATCAGAACTTCTTCTTCCCTAGAACAATTACAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTATCAGCCTAAATCAGTTTAT-GTTGGTTTGCACA-CA--GTCAAGTTCTAAA--CAAGTCTTG-ATTTTAACACTAGAAATGTAG----TA-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTTTTGTTTTTAAAA-TTTCATATATCATATTTCATTTTTTTTTCTATTTCCTTTGC-TTTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGTTTGT-TG----GG-AGTAGTATGTAGATGTAtg
gi|4 : TGAAATAACA----AA-TAACCTAGTTGCTGTAGATCACCACCATCAAATCTCAATACAAA-TCTCACT--GACC-AC-TTCCTTTTTCTCGAACCCTATATGACCAGAACCCATTCTTCCGTAGAACAATCCGAAATTGGAATAGCCTCCCAAGTTATGTTAAAGTC-AGTACCAGCCTCGATCAGTTTACGGCTGGTTTG-GC--CACTATAAAATTCTAAA--CAAGTCCAGTTTTTTTATATTATAATTATAG----TTCA--------GTTTTAAATGAAT----AAACATG-TATAGCTTTGTTGTTTTT-AAAGTTTTAAAT-T--TATTTCA--TTTTTTACTATTATTTTTAC-TGTTTCC-A-GATAGC
gi|5 : ACAAAAAATGCAAAA--TACCTATGTACTTTTTTCTCGGACACTATATCATCAGAACGCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGATGTGTTAAAGCC-ATTACCAGCCTAAATCAGTTTATGGTTGGTCTG-GC--CACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTATCACTAGAATTGTAA----TT-A--------TTTTTAAATGAAA----GTATATG-TATAACTTTGTTGTTTTT-AAA-TTTCACATATCATATTTCA--TTTTTTACTATTTTTTTTGC-TGTTCCT-C-GACAACGCCTCCCAGTA----ATAAT
gi|6 : TTTTCTTGAACCCAATATCATCAGAACTCGTTCTTCCAAAGAACAATCCGAAATTGGAATAGCCTATCAGGTTGTGCTAAATCC-AGTACCAGCCTCAATCAGTTAACGGCTGGTCTG-CCCACA--GTAAAATTCTAAA--CGAGTTTAG-CCTTTAAAACTAGAAATGTAGATATTT-AATAATATTTTTTTAAATGAAA----ATATATG-TATAGCTCTGTTGTTTTT-AAA----CA------ATATTTCA--TTTTTTACTCTTTTATTTGC-TGTTTCC-C-GACAGCGCC-CCCAGCA----ATAATC--AAATTGATTAA-TG----GG-AGTCATATGTAGATGTAatgtagatgtagacatatttatctgaa
gi|7 : ATAAAGAATTTAAATATTTTC-ATGTTCCTTTTTCTCGAACCATATAT-------------TCTTCC-TAGAACAATCAGAAATTGGAATAGCCTACCAAGTTTTAT-AAAGCC-AGTACCAGCCTCAGTCAGTTTACGGCTGATCTT-GC--CACAGTAAACTTCT-------------------------TAAAAATGTAA----AT-A--------TTT--AAATGAAA----ATATATG-TATAGCTTTGTTGTTTT--AAA---------ACCATAATTCA--TTTTTCACCATTTCTTTTTC-TGTTCCG-CAGACAGTGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TG----CT-AGCAATATGAAGATGTAG
gi|8 : GTCATGTCTTCAACTTCTCAACAC-TATTTGATAATATGGC---------CAATAACACACTCAAATTTATTAAGCGAAACAAACAAACCAATGATAA----------GAAAC----TACAACACT-ATTGTTAGACCACCATTAGAATAC-TA------------GTACTGCTCCTTTATCAGACATTCCTGACAAAAG-ACACAATCACACAAAATA--GAAAGAGTACAGAGGGCAGTAGCTAGATAAGTATTGAATa
gi|9 : AGTTAATTTACAGCTGGTCTG-GCCTCA--GTAAAATTCTAAAATCAGG-CCTG-TTAT--ATACTAA--------------------------TTTAAATGAGACAATATACATG-TATAAA-ATATAGTTTT---GA-TTT--TAAACC---CTTCA--T-------CATTTCATTGACATGTTT------ACAACACCTCGCAGTT----ATGATCAGTAATTGATTGT-TG-----G-AGTACCATGTAGATGTAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 333333 11 1 4444444444 11 444444444444444444444 11111111111111111111111111111111111111111111111 11 1 1 2 1 2222 1 111 3 1111111111111111 11111111111 11111
lowQualScore : 1 1 1 888888 0 11 3 7 6666666666 7 11 1 0 111111111111111111111 2 8 99999999999999999999999999999999999999999999999 1 1 11 1 4 1 0 3 7 7 0 0 0 0 1 1 1 1111 0 55 777 3 000 1 6 1 0 8 2 0 0 5 4 77 6 5 00 0 0 6666666666666666 8888 4 0 99 88888888888 55 3 888 7777 0 4 11111 1
lowQualScore : . . . ...... . .. . . .......... . .. . . ..................... . . ............................................... . . .. . . . . . . . . . . . . . . .... . .. ... . ... . . . . . . . . . . .. . . .. . . ................ .... . . .. ........... .. . ... .... . . ..... .
lowQualScore : 0 0 0 333333 7 00 3 3 0000000000 3 00 0 7 000000000000000000000 5 0 66666666666666666666666666666666666666666666666 4 0 00 0 2 0 5 3 3 3 0 0 2 2 0 0 0 2222 0 00 888 5 222 0 7 0 1 5 5 2 1 0 3 99 6 0 44 2 2 8888888888888888 5555 0 8 66 22222222222 55 6 555 7777 6 4 11111 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAANGAAAAATACCGTCATATTCCCNTATAAATTACANAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGCGCCACACTCAGTCACGACTTTAACTTCTCAACAC-ATATTGATAATATAGCATC-AA--G-CAAACAACACCCTCAAATTCATTAAACGANACGTACAAACAAATAATAAAGAGAT-AAAGAAAC--C-TACAACACTTATGTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAATCATACAAANTA--GAAAGAGTACAGAGGGCAGCAGCTNGATACGTACTNAATAATTACGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAAT-TT-AAACTGGCAAACCCTTCATCAAAGAAGAATNAATTCATCACTNATCNTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACCACCATCTAATCCTAATAAAAAATCTAAAN--TNTC-ATGTNCCTTTTTCTCGGACCCTATATCATCAGAACTCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTCAATCAGTTTACGGCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTAACACTAGAAATGTAG----TT-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TGG-----GAGTANTATGTAGATGTAG
Reference ( family-5839 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAANGAAAAATACCGTCATATTCCCNTATAAATTACANAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGCGCCACACTCAGTCACGACTTTAACTTCTCAACAC-ATATTGATAATATAGCATC-AA--G-CAAACAACACCCTCAAATTCATTAAACGANACGTACAAACAAATAATAAAGAGAT-AAAGAAAC--C-TACAACACTTATGTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAATCATACAAANTA--GAAAGAGTACAGAGGGCAGCAGCTNGATACGTACTNAATAATTACGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAAT-TT-AAACTGGCAAACCCTTCATCAAAGAAGAATNAATTCATCACTNATCNTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACCACCATCTAATCCNAATAAAAAATCTAAAN--TNTC-ATGTNCCTTTTTCTCGGACCCTATATCATCAGAACTCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTCAATCAGTTTACGGCTGGTCTGGCCAC-GTAAAATTCTAAA--CAAGTCTTG-TTTTTAACACTAGAAATGTAG----TT-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TGG-----GAGTANTATGTAGATGTAG
gi|1 : ACAAAAAAGAAAAATACCGTCATATTCCCTTATAAATTACAGAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGTGTCACACTCAGCCACGATTTTAATTTCTCAACAC-ATATAGACAACATAACATC-AAAAG-CAAACAACACCCTTAAATTCATTAAACGTTACATACAAACAAATAATAAAAAGATGAAAGAAACGGCATACAACACCTATGTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAAACATACAAAGTA--GAAAGAATACAAAGGGAAGCAGCTTGATATGTACTCAATAATTATGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAATCTT-AAAATGGCAAATCCTCCATCAAAGACAAATAAATTCATCACTAATCCTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACAACCATCTAATCCGAATAAAAAATCTAAAT--TTTC-ATGTACCTTTTTCTCGGACCCTATAGCATCAGAACTCATTCTTCCCCAGAACAACTAGAAATTGGAAAAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTAAATCAGTTTATGGTTGGTCTGGCCA--GTTAAATTCTAAA--CAAGTCTTG-TTTTTAACACTATAAATGTAG----TT-A--------TTTTTAAATGAAA----GTAAATG-TATGACTTTGTTGTTTTT-AAA-TTTCATATATCATGTTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-T-GACAGCANNNNNNNNNN----NNNNNNNNNNNNNNNNNNN-NNN-----NNNNNNNATGAAGGTTTAG
gi|10 : caccatagtgtacctaacaataaatacaatatctgatccccaaattctccaaaatgatcttaacaccatagaaaattcggaagaaaactggtgtatagaattcaatgcagataaatgtgaaatcagaagaataTTTTAAATCAAA----ATAGAGGACATAGTTTTCTTGTT-----GA-TTT--TAAACCAGTCTTCA--TTTTCTA--AT-----------GTCCCT-C-GACAGCGCCTCCCAGTT----ATAATCAGTAACTGACTGC-TGG-----GAGCACCATGTAGATATAtctg
gi|11 : C-TA------------GCA--------------------------AAC-C-TCACAATCACGCAAACAAATGAAAGGGTATAGAGGGCA
gi|12 : gaaataaaaacggcctacatcaccaatgtaagtctgattgtctgtctggcatctAAATATAG----TT-A--------TTTCTAAATGAAA----ATATATG-TATAGCTTTGTTGTT-------------------ACATTTTA---ATTTTACTATTTCTTTTGC-T-TTCCCAG-GACAGTGTCTTCCAGCA----A
gi|13 : AGACAA-AATGAAAATATATG-------------------------------------------A-G-ACACAAACATACAAAGTA--GAAAGAATACAGAATGCAGCAGCTTCATATGTACTCAATAAGTA-GACTTCACAAACAag
gi|14 : CATCAGAACTCATTCTTCCCTAAAACAATTAGAAATTGGAATAGCCTTCCAAGTTGTGTTAAAGCC-AGTACCAGTCTCAGTCAGTTTACG
gi|15 : cTG-TTTTTAACACTAGACATGTAG----TT-A--------TTTTTAAATAAAA----GTATATG-TATAACTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTt
gi|16 : ACAAAAATGAAAAATACCGTCATATTCCCCTATAAATTACACAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------A
gi|17 : TTGCTTTCGC-TGTTCCC-T-GACAGTGCCACTCAGTT----ATAACAAGCAATTGATTGT-TGGGACCTGAGCACCATGTAGtg
gi|18 : ttTTTCTTTCGC-TGTTCCT-T-GACAGCGCCTCCCAGTATTATATAATCAGAAATTGATTGT-TGG-----GAGTAATATGTAGA
gi|19 : TTACGATTTTACCAGCAGTGTCACTCAGATTGTA-CAGAT-TTAAAATTGGCAAACCCT
gi|2 : CCCATATTAATTACAAAGTACAGAACTTAGACCAACAAAAAGTGCAGTGCACTTCTCTAGAGGCGCCACACTCAGTCATGACTTTA------CAAATC-ACATTGGTAATGTAGCATCCAA--GTCAAACACCACCCTCAAAC-----GAACGAGACGTACAAACAATTAATAAAGAAATTAAAG---C--C-TACAACACTTATGTAAGACCACAATTAGTAAAC-TGCTCCTCTGTCTGGCA--------------------------AAA-ATACACAATCATACAAACTA--GAAAGAGTACAGAGGGCAGCTGCTAGATACATGCTAAATAATTATTATATTACAAGCAGTGTCTCCAAAA-AGAATC-AAT-CT-AAACTAGCAAAACCTTTATCAAAGAAGAAGGAACACATCACTCATCTTATTGTATAAAATAAAATACCAACCAATCTAGCTGCTGTACATCA--ACCATCTAATTCTAATAAAATTTCTAAAA--TGTC-ATGTTCCCTTTTCTCGAATCTT-TACCATCACAGCTC--CCT--CCTAGAACATTTAGAAATTGGAATGGCATCCC-----------AAGCCAAGTACCAGTCTCAATCAATTTAC
gi|20 : CCTCCCAGTA----GTCATCAGAAATTGA-TGTATGG-----GAGTATTATGTAGATGTA
gi|3 : AATATT-AAACTGGCAAGCCCTTCATCAGAGAAGAATCAATTCATTACTTATCGTTCTTTTTAAAATAGAA----AA-CAACATAGTTGCTGTAGATCACCTCTATTTAAT--TAAAAAAAAATCTAAAA--TATG-ATGTACATTTTTCTCGGACCCTGTATCATCAGAACTTCTTCTTCCCTAGAACAATTACAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTATCAGCCTAAATCAGTTTAT-GTTGGTTTGCACACAGTCAAGTTCTAAA--CAAGTCTTG-ATTTTAACACTAGAAATGTAG----TA-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTTTTGTTTTTAAAA-TTTCATATATCATATTTCATTTTTTTTTCTATTTCCTTTGC-TTTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGTTTGT-TGG-----GAGTAGTATGTAGATGTAtg
gi|4 : TGAAATAACA----AA-TAACCTAGTTGCTGTAGATCACCACCATCAAATCTCAATACAAA-TCTCACT--GACC-AC-TTCCTTTTTCTCGAACCCTATATGACCAGAACCCATTCTTCCGTAGAACAATCCGAAATTGGAATAGCCTCCCAAGTTATGTTAAAGTC-AGTACCAGCCTCGATCAGTTTACGGCTGGTTTGGCCACTATAAAATTCTAAA--CAAGTCCAGTTTTTTTATATTATAATTATAG----TTCA--------GTTTTAAATGAAT----AAACATG-TATAGCTTTGTTGTTTTT-AAAGTTTTAAAT-T--TATTTCA--TTTTTTACTATTATTTTTAC-TGTTTCC-A-GATAGC
gi|5 : ACAAAAAATGCAAAA--TACCTATGTACTTTTTTCTCGGACACTATATCATCAGAACGCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGATGTGTTAAAGCC-ATTACCAGCCTAAATCAGTTTATGGTTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTATCACTAGAATTGTAA----TT-A--------TTTTTAAATGAAA----GTATATG-TATAACTTTGTTGTTTTT-AAA-TTTCACATATCATATTTCA--TTTTTTACTATTTTTTTTGC-TGTTCCT-C-GACAACGCCTCCCAGTA----ATAAT
gi|6 : TTTTCTTGAACCCAATATCATCAGAACTCGTTCTTCCAAAGAACAATCCGAAATTGGAATAGCCTATCAGGTTGTGCTAAATCC-AGTACCAGCCTCAATCAGTTAACGGCTGGTCTGCCCACAGTAAAATTCTAAA--CGAGTTTAG-CCTTTAAAACTAGAAATGTAGATATTT-AATAATATTTTTTTAAATGAAA----ATATATG-TATAGCTCTGTTGTTTTT-AAA----CA------ATATTTCA--TTTTTTACTCTTTTATTTGC-TGTTTCC-C-GACAGCGCC-CCCAGCA----ATAATC--AAATTGATTAA-TGG-----GAGTCATATGTAGATGTAatgtagatgtagacatatttatctgaa
gi|7 : ATAAAGAATTTAAATATTTTC-ATGTTCCTTTTTCTCGAACCATATAT-------------TCTTCC-TAGAACAATCAGAAATTGGAATAGCCTACCAAGTTTTAT-AAAGCC-AGTACCAGCCTCAGTCAGTTTACGGCTGATCTTGCCACAGTAAACTTCT-------------------------TAAAAATGTAA----AT-A--------TTT--AAATGAAA----ATATATG-TATAGCTTTGTTGTTTT--AAA---------ACCATAATTCA--TTTTTCACCATTTCTTTTTC-TGTTCCG-CAGACAGTGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TGC-----TAGCAATATGAAGATGTAG
gi|8 : GTCATGTCTTCAACTTCTCAACACTAT-TTGATAATATGGC----------CAA-TAACACACTCAAATTTATTAAGCGAAACAAACAAACCAATGAT----------AAGAAA---C-TACAACACTATTGTTAGACCACCATTAGAATAC-TA------------GTACTGCTCCTTTATCAGACATTCCTGACAAAAG-ACACAATCACACAAAATA--GAAAGAGTACAGAGGGCAGTAGCTAGATAAGTATTGAATa
gi|9 : AGTTAATTTACAGCTGGTCTGGCCTCAGTAAAATTCTAAAATCAGGCCT-G-TTAT--ATACTAA--------------------------TTTAAATGAGACAATATACATG-TATAAAAT-ATAGTTTT---GA-TTT--TAAACC---CTTCA--TC-------ATTTCATTGACATGTTT------ACAACACCTCGCAGTT----ATGATCAGTAATTGATTGT-T-G-----GAGTACCATGTAGATGTAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 333333 11 1 4444444444 11 444444444444444444444 11111111111111111111111111111111111111111111111 11 1 1 2 1 2222 1 111 1111111111111111 11111111111 11111
lowQualScore : 1 1 1 888888 0 11 3 7 6666666666 7 11 1 0 111111111111111111111 2 8 99999999999999999999999999999999999999999999999 1 1 11 1 4 1 0 3 7 7 0 0 0 0 1 1 1 1111 0 55 777 3 000 1 6 1 0 8 2 0 0 5 77 6 5 00 0 0 6666666666666666 8888 4 0 99 88888888888 55 3 888 7777 0 4 11111 1
lowQualScore : . . . ...... . .. . . .......... . .. . . ..................... . . ............................................... . . .. . . . . . . . . . . . . . . .... . .. ... . ... . . . . . . . . . .. . . .. . . ................ .... . . .. ........... .. . ... .... . . ..... .
lowQualScore : 0 0 0 333333 7 00 3 3 0000000000 3 00 0 7 000000000000000000000 5 0 66666666666666666666666666666666666666666666666 4 0 00 0 2 0 5 3 3 3 0 0 2 2 0 0 0 2222 0 00 555 5 222 0 7 0 1 5 5 2 1 0 99 6 0 44 2 2 8888888888888888 5555 0 8 66 22222222222 55 6 555 7777 6 4 11111 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAANGAAAAATACCGTCATATTCCCNTATAAATTACANAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGCGCCACACTCAGTCACGACTTTAACTTCTCAACAC-ATATTGATAATATAGCATC-AA--G-CAAACAACACCCTCAAATTCATTAAACGANACGTACAAACAAATAATAAAGAGAT-AAAGAAAC--C-TACAACACTTATGTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAATCATACAAANTA--GAAAGAGTACAGAGGGCAGCAGCTNGATACGTACTNAATAATTACGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAAT-TT-AAACTGGCAAACCCTTCATCAAAGAAGAATNAATTCATCACTNATCNTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACCACCATCTAATCCTAATAAAAAATCTAAAN--TNTC-ATGTNCCTTTTTCTCGGACCCTATATCATCAGAACTCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTCAATCAGTTTACGGCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTAACACTAGAAATGTAG----TT-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TGG-----GAGTANTATGTAGATGTAG
Reference ( family-5839 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAANGAAAAATACCGTCATATTCCCNTATAAATTACANAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGCGCCACACTCAGTCACGACTTTAACTTCTCAACAC-ATATTGATAATATAGCATC-AA--G-CAAACAACACCCTCAAATTCATTAAACGANACGTACAAACAAATAATAAAGAGAT-AAAGAAAC--C-TACAACACTTATGTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAATCATACAAANTA--GAAAGAGTACAGAGGGCAGCAGCTNGATACGTACTNAATAATTACGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAAT-TT-AAACTGGCAAACCCTTCATCAAAGAAGAATNAATTCATCACTNATCNTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACCACCATCTAATCCTAATAAAAAATCTAAAN--TNTC-ATGTNCCTTTTTCTCGGACCCTATATCATCAGAACTCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTCAATCAGTTTACGGCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTAACACTAGAAATGTAG----TT-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TGG-----GAGTANTATGTAGATGTAG
gi|1 : ACAAAAAAGAAAAATACCGTCATATTCCCTTATAAATTACAGAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGTGTCACACTCAGCCACGATTTTAATTTCTCAACAC-ATATAGACAACATAACATC-AAAAG-CAAACAACACCCTTAAATTCATTAAACGTTACATACAAACAAATAATAAAAAGATGAAAGAAACGGCATACAACACCTATGTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAAACATACAAAGTA--GAAAGAATACAAAGGGAAGCAGCTTGATATGTACTCAATAATTATGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAATCTT-AAAATGGCAAATCCTCCATCAAAGACAAATAAATTCATCACTAATCCTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACAACCATCTAATCCGAATAAAAAATCTAAAT--TTTC-ATGTACCTTTTTCTCGGACCCTATAGCATCAGAACTCATTCTTCCCCAGAACAACTAGAAATTGGAAAAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTAAATCAGTTTATGGTTGGTCTGGC--CAGTTAAATTCTAAA--CAAGTCTTG-TTTTTAACACTATAAATGTAG----TT-A--------TTTTTAAATGAAA----GTAAATG-TATGACTTTGTTGTTTTT-AAA-TTTCATATATCATGTTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-T-GACAGCANNNNNNNNNN----NNNNNNNNNNNNNNNNNNN-NNN-----NNNNNNNATGAAGGTTTAG
gi|10 : caccatagtgtacctaacaataaatacaatatctgatccccaaattctccaaaatgatcttaacaccatagaaaattcggaagaaaactggtgtatagaattcaatgcagataaatgtgaaatcagaagaataTTTTAAATCAAA----ATAGAGGACATAGTTTTCTTGTT-----GA-TTT--TAAACCAGTCTTCA--TTTTCTA--AT-----------GTCCCT-C-GACAGCGCCTCCCAGTT----ATAATCAGTAACTGACTGC-TGG-----GAGCACCATGTAGATATAtctg
gi|11 : C-TA------------GCA--------------------------AAC-C-TCACAATCACGCAAACAAATGAAAGGGTATAGAGGGCA
gi|12 : gaaataaaaacggcctacatcaccaatgtaagtctgattgtctgtctggcatctAAATATAG----TT-A--------TTTCTAAATGAAA----ATATATG-TATAGCTTTGTTGTT-------------------ACATTTTA---ATTTTACTATTTCTTTTGC-T-TTCCCAG-GACAGTGTCTTCCAGCA----A
gi|13 : AGACAA-AATGAAAATATATG-------------------------------------------A-G-ACACAAACATACAAAGTA--GAAAGAATACAGAATGCAGCAGCTTCATATGTACTCAATAAGTA-GACTTCACAAACAag
gi|14 : CATCAGAACTCATTCTTCCCTAAAACAATTAGAAATTGGAATAGCCTTCCAAGTTGTGTTAAAGCC-AGTACCAGTCTCAGTCAGTTTACG
gi|15 : cTG-TTTTTAACACTAGACATGTAG----TT-A--------TTTTTAAATAAAA----GTATATG-TATAACTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTt
gi|16 : ACAAAAATGAAAAATACCGTCATATTCCCCTATAAATTACACAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------A
gi|17 : TTGCTTTCGC-TGTTCCC-T-GACAGTGCCACTCAGTT----ATAACAAGCAATTGATTGT-TGGGACCTGAGCACCATGTAGtg
gi|18 : ttTTTCTTTCGC-TGTTCCT-T-GACAGCGCCTCCCAGTATTATATAATCAGAAATTGATTGT-TGG-----GAGTAATATGTAGA
gi|19 : TTACGATTTTACCAGCAGTGTCACTCAGATTGTA-CAGAT-TTAAAATTGGCAAACCCT
gi|2 : CCCATATTAATTACAAAGTACAGAACTTAGACCAACAAAAAGTGCAGTGCACTTCTCTAGAGGCGCCACACTCAGTCATGACTTTA------CAAATC-ACATTGGTAATGTAGCATCCAA--GTCAAACACCACCCTCAAAC-----GAACGAGACGTACAAACAATTAATAAAGAAATTAAAG---C--C-TACAACACTTATGTAAGACCACAATTAGTAAAC-TGCTCCTCTGTCTGGCA--------------------------AAA-ATACACAATCATACAAACTA--GAAAGAGTACAGAGGGCAGCTGCTAGATACATGCTAAATAATTATTATATTACAAGCAGTGTCTCCAAAA-AGAATC-AAT-CT-AAACTAGCAAAACCTTTATCAAAGAAGAAGGAACACATCACTCATCTTATTGTATAAAATAAAATACCAACCAATCTAGCTGCTGTACATCA--ACCATCTAATTCTAATAAAATTTCTAAAA--TGTC-ATGTTCCCTTTTCTCGAATCTT-TACCATCACAGCTC--CCT--CCTAGAACATTTAGAAATTGGAATGGCATCCC-----------AAGCCAAGTACCAGTCTCAATCAATTTAC
gi|20 : CCTCCCAGTA----GTCATCAGAAATTGA-TGTATGG-----GAGTATTATGTAGATGTA
gi|3 : AATATT-AAACTGGCAAGCCCTTCATCAGAGAAGAATCAATTCATTACTTATCGTTCTTTTTAAAATAGAA----AA-CAACATAGTTGCTGTAGATCACCTCTATTTAAT--TAAAAAAAAATCTAAAA--TATG-ATGTACATTTTTCTCGGACCCTGTATCATCAGAACTTCTTCTTCCCTAGAACAATTACAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTATCAGCCTAAATCAGTTTAT-GTTGGTTTGCACACAGTCAAGTTCTAAA--CAAGTCTTG-ATTTTAACACTAGAAATGTAG----TA-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTTTTGTTTTTAAAA-TTTCATATATCATATTTCATTTTTTTTTCTATTTCCTTTGC-TTTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGTTTGT-TGG-----GAGTAGTATGTAGATGTAtg
gi|4 : TGAAATAACA----AA-TAACCTAGTTGCTGTAGATCACCACCATCAAATCTCAATACAAA-TCTCACT--GACC-AC-TTCCTTTTTCTCGAACCCTATATGACCAGAACCCATTCTTCCGTAGAACAATCCGAAATTGGAATAGCCTCCCAAGTTATGTTAAAGTC-AGTACCAGCCTCGATCAGTTTACGGCTGGTTTGGCCACTATAAAATTCTAAA--CAAGTCCAGTTTTTTTATATTATAATTATAG----TTCA--------GTTTTAAATGAAT----AAACATG-TATAGCTTTGTTGTTTTT-AAAGTTTTAAAT-T--TATTTCA--TTTTTTACTATTATTTTTAC-TGTTTCC-A-GATAGC
gi|5 : ACAAAAAATGCAAAA--TACCTATGTACTTTTTTCTCGGACACTATATCATCAGAACGCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGATGTGTTAAAGCC-ATTACCAGCCTAAATCAGTTTATGGTTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTATCACTAGAATTGTAA----TT-A--------TTTTTAAATGAAA----GTATATG-TATAACTTTGTTGTTTTT-AAA-TTTCACATATCATATTTCA--TTTTTTACTATTTTTTTTGC-TGTTCCT-C-GACAACGCCTCCCAGTA----ATAAT
gi|6 : TTTTCTTGAACCCAATATCATCAGAACTCGTTCTTCCAAAGAACAATCCGAAATTGGAATAGCCTATCAGGTTGTGCTAAATCC-AGTACCAGCCTCAATCAGTTAACGGCTGGTCTGCCCACAGTAAAATTCTAAA--CGAGTTTAG-CCTTTAAAACTAGAAATGTAGATATTT-AATAATATTTTTTTAAATGAAA----ATATATG-TATAGCTCTGTTGTTTTT-AAA----CA------ATATTTCA--TTTTTTACTCTTTTATTTGC-TGTTTCC-C-GACAGCGCC-CCCAGCA----ATAATC--AAATTGATTAA-TGG-----GAGTCATATGTAGATGTAatgtagatgtagacatatttatctgaa
gi|7 : ATAAAGAATTTAAATATTTTC-ATGTTCCTTTTTCTCGAACCATATAT-------------TCTTCC-TAGAACAATCAGAAATTGGAATAGCCTACCAAGTTTTAT-AAAGCC-AGTACCAGCCTCAGTCAGTTTACGGCTGATCTTGCCACAGTAAACTTCT-------------------------TAAAAATGTAA----AT-A--------TTT--AAATGAAA----ATATATG-TATAGCTTTGTTGTTTT--AAA---------ACCATAATTCA--TTTTTCACCATTTCTTTTTC-TGTTCCG-CAGACAGTGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TGC-----TAGCAATATGAAGATGTAG
gi|8 : GTCATGTCTTCAACTTCTCAACACTAT-TTGATAATATGGC----------CAA-TAACACACTCAAATTTATTAAGCGAAACAAACAAACCAATGAT----------AAGAAA---C-TACAACACTATTGTTAGACCACCATTAGAATAC-TA------------GTACTGCTCCTTTATCAGACATTCCTGACAAAAG-ACACAATCACACAAAATA--GAAAGAGTACAGAGGGCAGTAGCTAGATAAGTATTGAATa
gi|9 : AGTTAATTTACAGCTGGTCTGGCCTCAGTAAAATTCTAAAATCAGGCCT-G-TTAT--ATACTAA--------------------------TTTAAATGAGACAATATACATG-TATAAAAT-ATAGTTTT---GA-TTT--TAAACC---CTTCA--TC-------ATTTCATTGACATGTTT------ACAACACCTCGCAGTT----ATGATCAGTAATTGATTGT-T-G-----GAGTACCATGTAGATGTAG
blockSeqs : T C C CTCTAG AC T A ATCCAAGT A TT G AAAGAAATTAAAGCC C A GTACTGCTCCTTTATCAGACATTCCTGACAAAAG T C AT T T C C T T A A A G C T TACC C CC TCT T TAT G T T A C A AT T T ATATTTAATAATATT CAAT A TA TTTCATATAT TT A AG TTAT A GACCT C
blockSeqs : A A . . . . . . . A AAGAAAC C . CTCCTCTGTCTGGCAAAAAT A G . A C A T . . . . . C T G . . CC CTC A A A . A C C . . T . TTCA . . T TTTCATATAT . . CA . . . C
blockSeqs : . . GCAAACC T C . A A G . . . . . . T A A A . T A C . . A . TTA . . T GTTTTAAATT . . C . . . A
blockSeqs : . AG T A . A T A . A G G . . T . TTA . . T TTTCACATAT . . T . . . T
blockSeqs : . A T . T G C . . A . TAA . . T TTTTAAAC . . T . . . G
blockSeqs : . A . . . . TTA . . . TTTTAAAC . . C . . . A
blockSeqs : . . . . . ATA . . . CA . . A . . . A
blockSeqs : . . . . AC . . C . . . C
blockSeqs : . . . . . . C .
blockSeqs : . . .
blockSeqCons :
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAANGAAAAATACCGTCATATTCCCNTATAAATTACANAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGCGCCACACTCAGTCACGACTTTAACTTCTCAACAC-ATATTGATAATATAGCATC-AA--G-CAAACAACACCCTCAAATTCATTAAACGANACGTACAAACAAATAATAAAGAGAT-AAAGAAAC--C-TACAACACTTATGTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAATCATACAAANTA--GAAAGAGTACAGAGGGCAGCAGCTNGATACGTACTNAATAATTACGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAAT-TT-AAACTGGCAAACCCTTCATCAAAGAAGAATNAATTCATCACTNATCNTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACCACCATCTAATCCTAATAAAAAATCTAAAN--TNTC-ATGTNCCTTTTTCTCGGACCCTATATCATCAGAACTCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTCAATCAGTTTACGGCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTAACACTAGAAATGTAG----TT-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TGG-----GAGTANTATGTAGATGTAG
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAANGAAAAATACCGTCATATTCCCNTATAAATTACANAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGCGCCACACTCAGTCACGACTTTAACTTCTCAACAC-ATATTGATAATATAGCATC-AA--G-CAAACAACACCCTCAAATTCATTAAACGANACGTACAAACAAATAATAAAGAGAT-AAAGAAAC--C-TACAACACTTATGTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAATCATACAAANTA--GAAAGAGTACAGAGGGCAGCAGCTNGATACGTACTNAATAATTACGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAAT-TT-AAACTGGCAAACCCTTCATCAAAGAAGAATNAATTCATCACTNATCNTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACCACCATCTAATCCTAATAAAAAATCTAAAN--TNTC-ATGTNCCTTTTTCTCGGACCCTATATCATCAGAACTCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTCAATCAGTTTACGGCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTAACACTAGAAATGTAG----TT-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TGG-----GAGTANTATGTAGATGTAG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 333333 11 1 4444444444 11 444444444444444444444 11111111111111111111111111111111111111111111111 11 1 1 2 1 2222 1 111 1111111111111111 11111111111 11111
lowQualScore : 1 1 1 888888 0 11 3 7 6666666666 7 11 1 0 111111111111111111111 2 8 99999999999999999999999999999999999999999999999 1 1 11 1 4 1 0 3 7 7 0 0 0 0 1 1 1 1111 0 55 777 3 000 1 6 1 0 8 2 0 0 5 77 6 5 00 0 0 6666666666666666 8888 4 0 99 88888888888 55 3 888 7777 0 4 11111 1
lowQualScore : . . . ...... . .. . . .......... . .. . . ..................... . . ............................................... . . .. . . . . . . . . . . . . . . .... . .. ... . ... . . . . . . . . . .. . . .. . . ................ .... . . .. ........... .. . ... .... . . ..... .
lowQualScore : 0 0 0 333333 7 00 3 3 0000000000 3 00 0 7 000000000000000000000 5 0 66666666666666666666666666666666666666666666666 4 0 00 0 2 0 5 3 3 3 0 0 2 2 0 0 0 2222 0 00 555 5 222 0 7 0 1 5 5 2 1 0 99 6 0 44 2 2 8888888888888888 5555 0 8 66 22222222222 55 6 555 7777 6 4 11111 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAANGAAAAATACCGTCATATTCCCNTATAAATTACANAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGCGCCACACTCAGTCACGACTTTAACTTCTCAACAC-ATATTGATAATATAGCATC-AA--G-CAAACAACACCCTCAAATTCATTAAACGANACGTACAAACAAATAATAAAGAGAT-AAAGAAAC--C-TACAACACTTATGTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAATCATACAAANTA--GAAAGAGTACAGAGGGCAGCAGCTNGATACGTACTNAATAATTACGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAAT-TT-AAACTGGCAAACCCTTCATCAAAGAAGAATNAATTCATCACTNATCNTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACCACCATCTAATCCTAATAAAAAATCTAAAN--TNTC-ATGTNCCTTTTTCTCGGACCCTATATCATCAGAACTCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTCAATCAGTTTACGGCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTAACACTAGAAATGTAG----TT-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TGG-----GAGTANTATGTAGATGTAG
Reference ( family-5839 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAANGAAAAATACCGTCATATTCCCNTATAAATTACANAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGCGCCACACTCAGTCACGACTTTAACTTCTCAACAC-ATATTGATAATATAGCATC-AA--G-CAAACAACACCCTCAAATTCATTAAACGANACGTACAAACAAATAATAAAGAGAT-AAAGAAAC--C-TACAACACTTATGTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAATCATACAAANTA--GAAAGAGTACAGAGGGCAGCAGCTNGATACGTACTNAATAATTACGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAAT-TT-AAACTGGCAAACCCTTCATCAAAGAAGAATNAATTCATCACTNATCNTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACCACCATCTAATCCTAATAAAAAATCTAAAN--TNTC-ATGTNCCTTTTTCTCGGACCCTATATCATCAGAACTCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTCAATCAGTTTACGGCTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTAACACTAGAAATGTAG----TT-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TGG-----GAGTANTATGTAGATGTAG
gi|1 : ACAAAAAAGAAAAATACCGTCATATTCCCTTATAAATTACAGAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------AGGTGTCACACTCAGCCACGATTTTAATTTCTCAACAC-ATATAGACAACATAACATC-AAAAG-CAAACAACACCCTTAAATTCATTAAACGTTACATACAAACAAATAATAAAAAGATGAAAGAAACGGCATACAACACCTATGTTAGACCACAATTAGAATAC-TG------------GCA--------------------------AAA-G-ACACAAACATACAAAGTA--GAAAGAATACAAAGGGAAGCAGCTTGATATGTACTCAATAATTATGACTTCACAAGCAGTGTCACTCAAA-TGTATCAAATCTT-AAAATGGCAAATCCTCCATCAAAGACAAATAAATTCATCACTAATCCTACTTTTTAAAATAAAA----AA-CAACCTAGTTGCTGTAGATCACAACCATCTAATCCGAATAAAAAATCTAAAT--TTTC-ATGTACCTTTTTCTCGGACCCTATAGCATCAGAACTCATTCTTCCCCAGAACAACTAGAAATTGGAAAAGCCTACCAAGTTGTGTTAAAGCC-AGTACCAGCCTAAATCAGTTTATGGTTGGTCTGGC--CAGTTAAATTCTAAA--CAAGTCTTG-TTTTTAACACTATAAATGTAG----TT-A--------TTTTTAAATGAAA----GTAAATG-TATGACTTTGTTGTTTTT-AAA-TTTCATATATCATGTTTCA--TTTTTTACTATTTCTTTTGC-TGTTCCC-T-GACAGCANNNNNNNNNN----NNNNNNNNNNNNNNNNNNN-NNN-----NNNNNNNATGAAGGTTTAG
gi|10 : caccatagtgtacctaacaataaatacaatatctgatccccaaattctccaaaatgatcttaacaccatagaaaattcggaagaaaactggtgtatagaattcaatgcagataaatgtgaaatcagaagaataTTTTAAATCAAA----ATAGAGGACATAGTTTTCTTGTT-----GA-TTT--TAAACCAGTCTTCA--TTTTCTA--AT-----------GTCCCT-C-GACAGCGCCTCCCAGTT----ATAATCAGTAACTGACTGC-TGG-----GAGCACCATGTAGATATAtctg
gi|11 : C-TA------------GCA--------------------------AAC-C-TCACAATCACGCAAACAAATGAAAGGGTATAGAGGGCA
gi|12 : gaaataaaaacggcctacatcaccaatgtaagtctgattgtctgtctggcatctAAATATAG----TT-A--------TTTCTAAATGAAA----ATATATG-TATAGCTTTGTTGTT-------------------ACATTTTA---ATTTTACTATTTCTTTTGC-T-TTCCCAG-GACAGTGTCTTCCAGCA----A
gi|13 : AGACAA-AATGAAAATATATG-------------------------------------------A-G-ACACAAACATACAAAGTA--GAAAGAATACAGAATGCAGCAGCTTCATATGTACTCAATAAGTA-GACTTCACAAACAag
gi|14 : CATCAGAACTCATTCTTCCCTAAAACAATTAGAAATTGGAATAGCCTTCCAAGTTGTGTTAAAGCC-AGTACCAGTCTCAGTCAGTTTACG
gi|15 : cTG-TTTTTAACACTAGACATGTAG----TT-A--------TTTTTAAATAAAA----GTATATG-TATAACTTTGTTGTTTTT-AAA-TTTCATATATCATATTTCA--TTTTt
gi|16 : ACAAAAATGAAAAATACCGTCATATTCCCCTATAAATTACACAATACAGAACTTAAAACAACAAAAAATGCAAAATACCT------A
gi|17 : TTGCTTTCGC-TGTTCCC-T-GACAGTGCCACTCAGTT----ATAACAAGCAATTGATTGT-TGGGACCTGAGCACCATGTAGtg
gi|18 : ttTTTCTTTCGC-TGTTCCT-T-GACAGCGCCTCCCAGTATTATATAATCAGAAATTGATTGT-TGG-----GAGTAATATGTAGA
gi|19 : TTACGATTTTACCAGCAGTGTCACTCAGATTGTA-CAGAT-TTAAAATTGGCAAACCCT
gi|2 : CCCATATTAATTACAAAGTACAGAACTTAGACCAACAAAAAGTGCAGTGCACTTCTCTAGAGGCGCCACACTCAGTCATGACTTTA------CAAATC-ACATTGGTAATGTAGCATCCAA--GTCAAACACCACCCTCAAAC-----GAACGAGACGTACAAACAATTAATAAAGAAATTAAAG---C--C-TACAACACTTATGTAAGACCACAATTAGTAAAC-TGCTCCTCTGTCTGGCA--------------------------AAA-ATACACAATCATACAAACTA--GAAAGAGTACAGAGGGCAGCTGCTAGATACATGCTAAATAATTATTATATTACAAGCAGTGTCTCCAAAA-AGAATC-AAT-CT-AAACTAGCAAAACCTTTATCAAAGAAGAAGGAACACATCACTCATCTTATTGTATAAAATAAAATACCAACCAATCTAGCTGCTGTACATCA--ACCATCTAATTCTAATAAAATTTCTAAAA--TGTC-ATGTTCCCTTTTCTCGAATCTT-TACCATCACAGCTC--CCT--CCTAGAACATTTAGAAATTGGAATGGCATCCC-----------AAGCCAAGTACCAGTCTCAATCAATTTAC
gi|20 : CCTCCCAGTA----GTCATCAGAAATTGA-TGTATGG-----GAGTATTATGTAGATGTA
gi|3 : AATATT-AAACTGGCAAGCCCTTCATCAGAGAAGAATCAATTCATTACTTATCGTTCTTTTTAAAATAGAA----AA-CAACATAGTTGCTGTAGATCACCTCTATTTAAT--TAAAAAAAAATCTAAAA--TATG-ATGTACATTTTTCTCGGACCCTGTATCATCAGAACTTCTTCTTCCCTAGAACAATTACAAATTGGAATAGCCTACCAAGTTGTGTTAAAGCC-AGTATCAGCCTAAATCAGTTTAT-GTTGGTTTGCACACAGTCAAGTTCTAAA--CAAGTCTTG-ATTTTAACACTAGAAATGTAG----TA-A--------TTTTTAAATGAAA----ATATATG-TATAGCTTTTTTGTTTTTAAAA-TTTCATATATCATATTTCATTTTTTTTTCTATTTCCTTTGC-TTTTCCC-C-GACAGCGCCTCCCAGTA----ATAATCAGAAATTGTTTGT-TGG-----GAGTAGTATGTAGATGTAtg
gi|4 : TGAAATAACA----AA-TAACCTAGTTGCTGTAGATCACCACCATCAAATCTCAATACAAA-TCTCACT--GACC-AC-TTCCTTTTTCTCGAACCCTATATGACCAGAACCCATTCTTCCGTAGAACAATCCGAAATTGGAATAGCCTCCCAAGTTATGTTAAAGTC-AGTACCAGCCTCGATCAGTTTACGGCTGGTTTGGCCACTATAAAATTCTAAA--CAAGTCCAGTTTTTTTATATTATAATTATAG----TTCA--------GTTTTAAATGAAT----AAACATG-TATAGCTTTGTTGTTTTT-AAAGTTTTAAAT-T--TATTTCA--TTTTTTACTATTATTTTTAC-TGTTTCC-A-GATAGC
gi|5 : ACAAAAAATGCAAAA--TACCTATGTACTTTTTTCTCGGACACTATATCATCAGAACGCGTTCTTCCCTAGAACAATTAGAAATTGGAATAGCCTACCAAGATGTGTTAAAGCC-ATTACCAGCCTAAATCAGTTTATGGTTGGTCTGGCCACAGTAAAATTCTAAA--CAAGTCTTG-TTTTTATCACTAGAATTGTAA----TT-A--------TTTTTAAATGAAA----GTATATG-TATAACTTTGTTGTTTTT-AAA-TTTCACATATCATATTTCA--TTTTTTACTATTTTTTTTGC-TGTTCCT-C-GACAACGCCTCCCAGTA----ATAAT
gi|6 : TTTTCTTGAACCCAATATCATCAGAACTCGTTCTTCCAAAGAACAATCCGAAATTGGAATAGCCTATCAGGTTGTGCTAAATCC-AGTACCAGCCTCAATCAGTTAACGGCTGGTCTGCCCACAGTAAAATTCTAAA--CGAGTTTAG-CCTTTAAAACTAGAAATGTAGATATTT-AATAATATTTTTTTAAATGAAA----ATATATG-TATAGCTCTGTTGTTTTT-AAA----CA------ATATTTCA--TTTTTTACTCTTTTATTTGC-TGTTTCC-C-GACAGCGCC-CCCAGCA----ATAATC--AAATTGATTAA-TGG-----GAGTCATATGTAGATGTAatgtagatgtagacatatttatctgaa
gi|7 : ATAAAGAATTTAAATATTTTC-ATGTTCCTTTTTCTCGAACCATATAT-------------TCTTCC-TAGAACAATCAGAAATTGGAATAGCCTACCAAGTTTTAT-AAAGCC-AGTACCAGCCTCAGTCAGTTTACGGCTGATCTTGCCACAGTAAACTTCT-------------------------TAAAAATGTAA----AT-A--------TTT--AAATGAAA----ATATATG-TATAGCTTTGTTGTTTT--AAA---------ACCATAATTCA--TTTTTCACCATTTCTTTTTC-TGTTCCG-CAGACAGTGCCTCCCAGTA----ATAATCAGAAATTGATTGT-TGC-----TAGCAATATGAAGATGTAG
gi|8 : GTCATGTCTTCAACTTCTCAACACTAT-TTGATAATATGGC----------CAA-TAACACACTCAAATTTATTAAGCGAAACAAACAAACCAATGAT----------AAGAAA---C-TACAACACTATTGTTAGACCACCATTAGAATAC-TA------------GTACTGCTCCTTTATCAGACATTCCTGACAAAAG-ACACAATCACACAAAATA--GAAAGAGTACAGAGGGCAGTAGCTAGATAAGTATTGAATa
gi|9 : AGTTAATTTACAGCTGGTCTGGCCTCAGTAAAATTCTAAAATCAGGCCT-G-TTAT--ATACTAA--------------------------TTTAAATGAGACAATATACATG-TATAAAAT-ATAGTTTT---GA-TTT--TAAACC---CTTCA--TC-------ATTTCATTGACATGTTT------ACAACACCTCGCAGTT----ATGATCAGTAATTGATTGT-T-G-----GAGTACCATGTAGATGTAG