lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333 11 11 11111111 111 00000000000000000000000000000000000000000000000000000000000000000000 1 11 5555555 1 222 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 11 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111111111 1 1
lowQualScore : 3 7 1 22222 77 33 7777 1 888 2 0 00 55555555 111 7 44444444444444444444444444444444444444444444444444444444444444444444 0 33 2 2222222 0 2 1 333 4444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 33 1 3 1 999999 8888 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0000000000 5 5
lowQualScore : . . . ..... .. .. .... . ... . . .. ........ ... . .................................................................... . .. . ....... . . . ... .................................................................................. . .. . . . ...... .... . ................................................................................................................................. .......... . .
lowQualScore : 3 3 7 66666 99 44 0000 4 888 5 2 44 11111111 222 7 55555555555555555555555555555555555555555555555555555555555555555555 0 88 5 5555555 7 5 5 333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 88 0 2 0 555555 6666 4 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0000000000 0 0
consensus : NNNNTACAAATAAAGCTATTTTATAAACTTTTTGTTNAN--AAA--CATGTNTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCGATCAGA--A----TGTGAANTNTTGTTGNTGCC---TANATCGC-CC-CGCTCTAAATTCNTCAACAACAACCGTCCTAAATATCACGGGCNA----AGA-ATG--AATGCGCANAGC-----CAAAATTTCAAANCAAAAACATGGCTTCCCAAGNGAAGATGTTGAAACGGG---GTC--------GTC----------ATACTCTTTTTCTAAACTACTTTGTTCTATTTTTAGATGGAACCTNNNNNNNNNNNNNNNNTTTATAACTTTATAAATTTGGGACAATGAAAGCACGAGTTCCCTGTGTAAGTTGTGCACTT-ACTTGGTATAAAATGACTAGATAAATNTGCTATCACACT---ATTT---AAAATNCACCCGTAGTG----AACGNAGTGCATTCANAAANTGTTNGGAANTGGNTTCACAAAATATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCGAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATATCATCTT
Reference ( gi|1 ) : ACCATACAAATAAAGCTATTTTACAAACTTTTTGTTCAC--AAA--CATGTGTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCATTCAGA--A----TGTGAAGTGTTATTGATGTCAAATATATTGCGTCTTGCTCTGAATGCTACAACAACAACTAT-TTAAAT----CAGATAA----AGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGAGAAGATGTTGAAACGGG---GTC--------ATC----------ATACGCGATTGTGAAACTACATCATTTTATCCTAAGATTTAACCTACCATACTAAGGGTGTTTTATAGTTTTATCAATTTGAGGCAATGAAAGCATGAGTTCCCTGTGTAAGTTGTGCACTT-ATTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTTCGGTAATTTTCCGGTAATA----AGCAAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAA-ATCAATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAGTTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCCAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATAGCATCTTG
gi|6 : TATAAATAAAGTTATTTTATGAACTTTTTGTCCAG--AAA--CATGTTTTCA--TTTCTGTTCCTGTA---ATGCGTGTTTTACAGTCAGA--A----TGT----TCTTGTCGAT------TAAATCGCTTCGCGCGATAAATTCATTAGCAACAACTGTCCTAAATATCACAG-CAA----GGATATGATAATGTACATAAT-----CAAAATATCAAA
gi|5 : gTATGAATAAAGCTATGCTGTAAACTGTTTATG-ACG-AAA--CTTGTCTT-T--TTTCTACTTCTGTA---ATA-----TTTGTGGTCAGA--A----GATGAAGAGCTGTTGTTGCC---TACATTGC----CGCTCCCAATACCAC-ACA-----CAT-TT--AT----CGGGTCATTCTTCA-ATG--AATGTGCACAG
gi|10 : gtaagtccaatagtttaggataaattgtgaatgttatttTACAAATAAAGCTATTTTACAAACTTTTTTGTAATG-AAA--CATG----CCAATTTTTG-TTTTGTA---ATATGTAAATTGCGTTTGGAG-A----TG
gi|18 : ctaaatctACAAACAAGGCTATTTTATGAACTTTCTGTT
gi|12 : cAATAAAGCAATTTTATAA---TTTCCTTAAT--AAAAGCATGCATTTT--TTTCCGCTTTTGTA---ATATGGATGTTGCAATCAGA--A----tctgtaatgagtgttttt
gi|9 : atcatAATAAAGTAATTTTATAA---TTTTATTTAATGAAG--CATGCCTTTT--CTCCCGCTTATGTT---ATATGGATGTTGCAATCAGA--AGAACTGTGGACT-TTACTG
gi|7 : TTTTGTTTGA--AAA---ATGTATTCT--TTCTTGCTCCTGTATTCATATTTATTTTGCGTTCAGA--A----AGTGAAGTTTTGTTGCTGTCTACTTTATCGTGCTCCATTCTAAAGTTTTCAACAAC
gi|11 : taatcgtaaatataaaacaatttgatgttta--AAA--TATGTATTTT--GTTCTGGTTCTGTT---ATATAGATTTTGAGATCAGATGA----TGT
gi|15 : tgcaaccttataaatcgaaatctattgtaataT--TTTCTGCATCTGTA---TTATGGATTTTGAGATCAGA--A----GGTGAATTGTTATT
gi|2 : ----AGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGGGAAGATGTTGAAACGGG---GTC--------ATC----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATCAATTTCAGGCAATGAAAGCATGAGTTCCCTGTGTAAGTTGTGCATTT-ATTTGGTATAGAATGACTAGATAAATCTGCTATCACACT---NNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCGAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATATCATCTTa
gi|3 : taccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn----AGA-ATG--AATGCACAGA----------AATTACAAAATAAAAACATGGTTTCCCAAGTGAAGATGTTGTAATGAG---GTT--------GTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAATTTGGGACAATAAAAGCATGAGTTGCTTGTGTAAGTTGTGCACTT-ACTTGGTATAAAATGACTAGATAATTATGCTATCACACT---A-------AAATACACCCATAGTACAGTAATAAAGTGCATTCAGAAACTGTTGAGAAATGGTTTCAC
gi|4 : tttaaatattaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaatgggccTGTTAAAACGGGACCGTCCTAAAAATATT----------ATACTCTTTTTCTAAACTACTTTGTTCTATTTTTAGATGGAACCT----------------TTTATAACTTTA--------AGGTAATGAAAGCACCAGTTTCCTGTGTCA----TGCTCTT-ACTAGGGAGAAAATGACTTAATAAACCTGCTTTCATACTTAAATTT---AAAATT----GG-AATG----A-CGTAGT---TTCACAAAA---TTGG-ATTGGATTTATAAAATATCGA
gi|16 : TATAATTTTATGAATTTAGGACAATGAAAGAACGAGATCCCTTTGTACGTattctactaa
gi|8 : TTACAAAATTGGGACAATAAGAGCACAAGATCCCTTTGTAAGTTATGCACTT-------TCTACGACGACTAGATAGATATGCTTTTACACC---AT
gi|17 : AAAACACGAGTTTCCCGTGGTAGTTGTGCACTTGATTT-GTATAAAATGACaaaacaccccatatacgg
gi|14 : AGTCGTGCACTC-ACTAGGTATAAAATGACTATATA----TGCTATCATACT---
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): GGCATCACCTGTTAGTCCAATAATTAAAGGATAAAATATTTAATACCGATTATCTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111
lowQualScore : 111111 11111111 2222222222222222222222 11 1 222222 1 11 55555555 99999999999 7777777777777777 333333333333333333333333333333333 1 0000000000000000000000000000000000000000000000000 1111111111
lowQualScore : 0 4 0 333333 66 33 2 66 0 777 1 3 11111111 3 1 1 5555555555555555555555 33 0 1 6 5 777777 1 7 0 33 1 33333333 1 1 11111111111 2 44 333 2 2 33 8888888888888888 0 77 1 11 1 1 3 111111111111111111111111111111111 11 777 1 66 1 5 1 1 0 2222222222222222222222222222222222222222222222222 0000000000 2 3
lowQualScore : . . . ...... .. .. . .. . ... . . ........ . . . ...................... .. . . . . ...... . . . .. . ........ . . ........... . .. ... . . .. ................ . .. . .. . . . ................................. .. ... . .. . . . . . ................................................. .......... . .
lowQualScore : 8 8 9 000000 99 66 2 11 1 888 1 0 33333333 3 0 0 2222222222222222222222 88 8 0 0 0 333333 0 0 0 88 0 00000000 0 0 22222222222 0 55 555 5 5 55 2222222222222222 8 22 0 99 9 7 3 777777777777777777777777777777777 88 555 0 88 0 8 0 0 7 0000000000000000000000000000000000000000000000000 0000000000 5 0
consensus : NNNNTACAAATAAAGCTATTTTATAAACTTTTTGTTNA-G--AAA--CATGTNTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCGNTCAGA--A----TGTGAAGTNTTGTTGNTGTC---TA---TATC--GC--TCCGCTC--TAAATTCTTCAACAACAACTGTCCTAAATATCACGGGCAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGNGAAGATGTTGAAACGGGGTCGTCCTAAAAATAT-ATACNCNNTTNCGAAACTACNTCGTTCTATCCTNAGATNNAACCTACCATACTAAGGGTGTTTTATAATTTTATNAATTTGGGGCAATGAAAGCACGAGTTCCCTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTT---AAAATNC-CCCGTAATA----AACGAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAATATCGATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAGTTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCNAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATANCATCTT
Reference ( family-576 ) : NNNNTACAAATAAAGCTATTTTATAAACTTTTTGTTNA-N--AAA--CATGTNTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCGATCAGA--A----TGTGAANTNTTGTTGNTGCC---TA---NATC--GC--CCCGCTC--TAAATTCNTCAACAACAACCGTCCTAAATATCACGGGCNAAGA-ATG--AATGCGCANAGCC-----AAAATTTCAAANCAAAAACATGGCTTCCCAAGNGAAGATGTTGAAACGGGGTCGTC-----------ATACTCTTTTTCTAAACTACTTTGTTCTATTTTTAGATGGAACCTNNNNNNNNNNNNNNNNTTTATAACTTTATAAATTTGGGACAATGAAAGCACGAGTTCCCTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAAATNTGCTATCACACT---ATTT---AAAATNCACCCGTAGTG----AACGNAGTGCATTCANAAANTGTTNGGAANTGGNTTCACAAAATATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCGAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATATCATCTT
gi|1 : TACAAATAAAGCTATTTTACAAACTTTTTGTTCA-C--AAA--CATGTGTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCATTCAGA--A----TGTGAAGTGTTATTGATGTCAAATA---TATT--GCGTCTTGCTC--TGAATGCTACAACAACAACTATT-TAAAT----CAGATAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGAGAAGATGTTGAAACGGGGTCATC-----------ATACGCGATTGTGAAACTACATCATTTTATCCTAAGATTTAACCTACCATACTAAGGGTGTTTTATAGTTTTATCAATTTGAGGCAATGAAAGCATGAGTTCCCTGTGTAAGTTGTGCACTTATTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTTCGGTAATTTTCCGGTAATA----AGCAAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAA-ATCAATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAGTTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCCAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATAGCATCTT
gi|10 : accaTACAAATAAAGCTATTTTACAAACTTTTTTGTAATG--AAA--CATG----CCAATTTTTG-TTTTGTA---ATATGTAAATTGCGTTTGGAG-A----TGg
gi|11 : ctaaatctAAATCTATTGTAAT-A--AAA--TATGTATTTT--GTTCTGGTTCTGTT---ATATAGATTTTGAGATCAGATGA----TGT
gi|12 : tgcaaccttataaatcgAATAAAGCAATTTTATAA---TTTCCTTAA-T--AAAAGCATGCATTTT--TTTCCGCTTTTGTA---ATATGGATGTTGCAATCAGA--A----
gi|14 : atcatAGTCGTGCACTCACTAGGTATAAAATGACTATATA----TGCTATCATACT---
gi|15 : tcT--TTTCTGCATCTGTA---TTATGGATTTTGAGATCAGA--A----GGTGAATTGTTATTtca
gi|16 : TATAATTTTATGAATTTAGGACAATGAAAGAACGAGATCCCTTTGTACGTa
gi|17 : AAAACACGAGTTTCCCGTGGTAGTTGTGCACTTGATTTGTATAAAATGAC
gi|18 : ACAAACAAGGCTATTTTATGAACTTTCTGTT
gi|2 : cAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGGGAAGATGTTGAAACGGGGTCATC-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATCAATTTCAGGCAATGAAAGCATGAGTTCCCTGTGTAAGTTGTGCATTTATTTGGTATAGAATGACTAGATAAATCTGCTATCACACT---NNNN---NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCGAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATATCATCTTtctgtaatgagtgttttt
gi|3 : taccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGGCCA-GA-ATG--AATGCACAGA----------AATTACAAAATAAAAACATGGTTTCCCAAGTGAAGATGTTGTAATGAGGTTGTCTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAATTTGGGACAATAAAAGCATGAGTTGCTTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAATTATGCTATCACAC-------T---AAAATACACCCATAGTACAGTAATAAAGTGCATTCAGAAACTGTTGAGAAATGGTTTCAC
gi|4 : tttaaatattaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaTGTTAAAACGGGACCGTCCTAAAAATATTATACTCTTTTTCTAAACTACTTTGTTCTATTTTTAGATGGAACCT----------------TTTATAACTTTA--------AGGTAATGAAAGCACCAGTTTCCTGTGTCA----TGCTCTTACTAGGGAGAAAATGACTTAATAAACCTGCTTTCATACTTAAATTT---AAAATT-----GGAATG-----ACGTAGT---TTCACAAAA---TTGG-ATTGGATTTATAAAATATCGA
gi|5 : TATGAATAAAGCTATGCTGTAAACTGTTTATGAC-G--AAA--CTTGTCTT-T--TTTCTACTTCTGTA---ATA-----TTTGTGGTCAGA--A----GATGAAGAGCTGTTGTTGCC---TA---CATT--G----CCGCTC--CCAATattctactaa
gi|6 : gtaagtccaatagtttaggataaattgtgaatgttatttTATAAATAAAGTTATTTTATGAACTTTTTGTCCA-G--AAA--CATGTTTTCA--TTTCTGTTCCTGTA---ATGCGTGTTTTACAGTCAGA--A----TGT----TCTTGTCGAT------TA---AATC--GC--TTCGCGCGATAAATTCATTAGCAACAACTGTCCTAAATATCAC-AGCAAGGATATGATAATGTACATAATC-----AAAATATCAAAaccacacacatttatcgggtcattcttcaatgaatgtgcacag
gi|7 : gATAAAACAATTTGATGTTTATTTTGTTTG-A--AAA---ATGTATTCT--TTCTTGCTCCTGTATTCATATTTATTTTGCGTTCAGA--A----AGTGAAGTTTTGTTGCTGTC---TACTTTATCGTGC--TCCATTC--TAAAGTTTTCAACAAC
gi|8 : taatcgtaaatTTACAAAATTGGGACAATAAGAGCACAAGATCCCTTTGTAAGTTATGCACTT------TCTACGACGACTAGATAGATATGCTTTTACACC---A--T---AAAACAC-CCCATA
gi|9 : AATAAAGTAATTTTATAA---TTTTATTTA-ATGAAG--CATGCCTTTT--CTCCCGCTTATGTT---ATATGGATGTTGCAATCAGA--AGAACTGTGGACTTTtacgg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGCATCACCTGTTAGTCCAATAATTAAAGGATAAAATATTTAATACCGATTATCTA
Alignments
lowQualScore : 1111 11111111 111 1111 11111 1 11 1 222222 1 11 2222222 33333333333 4444444444444444 333333333333 111 22222 1 2 1111111111
lowQualScore : 0 4 0 6666 66 33 2 66 0 777 1 1 11111111 2 1 1 33 777 8888 66666 0 33 0 5 777777 7 0 33 6666666 1 77777777777 1 22 222 1 1 22 9999999999999999 11 55 1 11 1 1 2 777777777777 444 2 77777 0 777 5 5 0 0 0000000000 1 1
lowQualScore : . . . .... .. .. . .. . ... . . ........ . . . .. ... .... ..... . .. . . ...... . . .. ....... . ........... . .. ... . . .. ................ .. .. . .. . . . ............ ... . ..... . ... . . . . .......... . .
lowQualScore : 8 8 9 2222 99 66 2 11 1 888 1 0 33333333 5 0 0 22 555 8888 22222 0 88 8 0 333333 0 0 88 5555555 0 22222222222 0 00 222 0 0 00 8888888888888888 66 00 0 99 9 7 5 777777777777 444 2 00000 8 222 8 8 7 0 0000000000 0 0
consensus : NNNNTACAAATAAAGCTATTTTATAAACTTTTTGTTNA--GAAA--CATGTNTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCGNTCAGA--A----TGTGAAGTNTTGTTGNTGTC---TA---TATC--GC-TCC-GCTC--TAAATTCTTCAACAACAACTGTCCTAAATATCACGGGCAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGNGAAGATGTTGAAACGGGGTCGTCCTAAAAATAT-ATACNCNNTTNCGAAACTACNTCGTTCTATCCTNAGATNNAACCTACCATACTAAGGGTGTTTTATAATTTTATNAATTTGGGGCAATGAAAGCACGAGTTCCCTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTA----AAATNC-CCCGTAATA----AACGAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAATATCGATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAG-TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCNAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATANCATCTT
Reference ( family-576 ) : NNNNTACAAATAAAGCTATTTTATAAACTTTTTGTTNA--GAAA--CATGTNTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCGNTCAGA--A----TGTGAAGTNTTGTTGNTGTC---TA---TATC--GC-TCC-GCTC--TAAATTCTTCAACAACAACTGTCCTAAATATCACGGGCAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGNGAAGATGTTGAAACGGGGTCGTCCTAAAAATAT-ATACNCNNTTNCGAAACTACNTCGTTCTATCCTNAGATNNAACCTACCATACTAAGGGTGTTTTATAATTTTATNAATTTGGGGCAATGAAAGCACGAGTTCCCTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTA----AAATNC-CCCGTAATA----AACGAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAATATCGATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAG-TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCNAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATANCATCTT
gi|1 : TACAAATAAAGCTATTTTACAAACTTTTTGTTCA--CAAA--CATGTGTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCATTCAGA--A----TGTGAAGTGTTATTGATGTCAAATA---TATT--GCGTCTTGCTC--TGAATGCTACAACAACAACTATT-TAAAT----CAGATAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGAGAAGATGTTGAAACGGGGTCATC-----------ATACGCGATTGTGAAACTACATCATTTTATCCTAAGATTTAACCTACCATACTAAGGGTGTTTTATAGTTTTATCAATTTGAGGCAATGAAAGCATGAGTTCCCTGTGTAAGTTGTGCACTTATTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTTCGGTAATTTT-CCGGTAATA----AGCAAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAA-ATCAATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAG-TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCCAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATAGCATCTT
gi|10 : accaTACAAATAAAGCTATTTTACAAACTTTTTTGTAAT-GAAA--CATG----CCAATTTTTG-TTTTGTA---ATATGTAAATTGCGTTTGGAG-A----TGg
gi|11 : ctaaatctAAATCTATTGTAAT--AAAA--TATGTATTTT--GTTCTGGTTCTGTT---ATATAGATTTTGAGATCAGATGA----TGT
gi|12 : tgcaaccttataaatcgAATAAAGCAATTTTATAA---TTTCCTTAA--TAAAAGCATGCATTTT--TTTCCGCTTTTGTA---ATATGGATGTTGCAATCAGA--A----
gi|14 : atcatAGTCGTGCACTCACTAGGTATAAAATGACTATATA----TGCTATCATACT---
gi|15 : tcT--TTTCTGCATCTGTA---TTATGGATTTTGAGATCAGA--A----GGTGAATTGTTATTtca
gi|16 : TATAATTTTATGAATTTAGGACAATGAAAGAACGAGATCCCTTTGTACGTa
gi|17 : AAAACACGAGTTTCCCGTGGTAGTTGTGCACTTGATTTGTATAAAATGAC
gi|18 : ACAAACAAGGCTATTTTATGAACTTTCTGTT
gi|2 : cAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGGGAAGATGTTGAAACGGGGTCATCNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------TTTATCAATTTCAGGCAATGAAAGCATGAGTTCCCTGTGTAAGTTGTGCATTTATTTGGTATAGAATGACTAGATAAATCTGCTATCACACT---NNNNN----NNNNNN-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCGAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATATCATCTTtctgtaatgagtgttttt
gi|3 : taccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGGCCA-GA-ATG--AATGCACAGA----------AATTACAAAATAAAAACATGGTTTCCCAAGTGAAGATGTTGTAATGAGGTTGTCTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAATTTGGGACAATAAAAGCATGAGTTGCTTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAATTATGCTATCACACT---A--------AAATACACCCATAGTACAGTAATAAAGTGCATTCAGAAACTGTTGAGAAATGGTTTCAC
gi|4 : tttaaatattaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaTGTTAAAACGGGACCGTCCTAAAAATATTATACTCTTTTTCTAAACTACTTTGTTCTATTTTTAGATGGAACCT----------------TTTATAACTTTA--------AGGTAATGAAAGCACCAGTTTCCTGTGTCA----TGCTCTTACTAGGGAGAAAATGACTTAATAAACCTGCTTTCATACTTAAATTTA----AAATT-----GGAAT-----GACGTAGT---TTCACAAAA---TTGG-ATTGGATTTATAAAATATCGA
gi|5 : TATGAATAAAGCTATGCTGTAAACTGTTTATGAC--GAAA--CTTGTCTT-T--TTTCTACTTCTGTA---ATA-----TTTGTGGTCAGA--A----GATGAAGAGCTGTTGTTGCC---TA---CATT--G---CC-GCTC--CCAATattctactaa
gi|6 : gtaagtccaatagtttaggataaattgtgaatgttatttTATAAATAAAGTTATTTTATGAACTTTTTGTCCA--GAAA--CATGTTTTCA--TTTCTGTTCCTGTA---ATGCGTGTTTTACAGTCAGA--A----TGT----TCTTGTCGAT------TA---AATC--GC-TTC-GCGCGATAAATTCATTAGCAACAACTGTCCTAAATATCAC-AGCAAGGATATGATAATGTACATAAT-----CAAAATATCAAAaccacacacatttatcgggtcattcttcaatgaatgtgcacag
gi|7 : gATAAAACAATTTGATGTTTATTTTGTTT---GAAA--AATGTATTCT--TTCTTGCTCCTGTATTCATATTTATTTTGCGTTCAGA--A----AGTGAAGTTTTGTTGCTGTC---TACTTTATCGTGC-TCC-ATTC--TAAAGTTTTCAACAAC
gi|8 : taatcgtaaatTTACAAAATTGGGACAATAAGAGCACAAGATCCCTTTGTAAGTTATGCACTT------TCTACGACGACTAGATAGATATGCTTTTACACC---A--TA----AAACAC-CCCATA
gi|9 : AATAAAGTAATTTTATAA---TTTTATTTAATGAAG--CATGCCTTTT--CTCCCGCTTATGTT---ATATGGATGTTGCAATCAGA--AGAACTGTGGACTTTtacgg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGCATCACCTGTTAGTCCAATAATTAAAGGATAAAATATTTAATACCGATTATCTA
Alignments
lowQualScore : 1111 11111111 111 1111 11111 1 11 1 222222 1 11 2222222 33333333333 4444444444444444 333333333333 111 22222 1 2 1111111111
lowQualScore : 0 4 0 6666 66 33 2 66 0 777 1 1 11111111 2 1 1 33 777 8888 66666 0 33 0 5 777777 7 0 33 6666666 1 77777777777 1 22 222 1 1 22 9999999999999999 11 55 1 11 1 1 2 777777777777 444 2 77777 0 777 5 5 0 0 0000000000 1 1
lowQualScore : . . . .... .. .. . .. . ... . . ........ . . . .. ... .... ..... . .. . . ...... . . .. ....... . ........... . .. ... . . .. ................ .. .. . .. . . . ............ ... . ..... . ... . . . . .......... . .
lowQualScore : 8 8 9 2222 99 66 2 11 1 888 1 0 33333333 5 0 0 22 555 8888 22222 0 88 8 0 333333 0 0 88 5555555 0 22222222222 0 00 222 0 0 00 8888888888888888 66 00 0 99 9 7 5 777777777777 444 2 00000 8 222 8 8 7 0 0000000000 0 0
consensus : NNNNTACAAATAAAGCTATTTTATAAACTTTTTGTTNA--GAAA--CATGTNTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCGNTCAGA--A----TGTGAAGTNTTGTTGNTGTC---TA---TATC--GC-TCC-GCTC--TAAATTCTTCAACAACAACTGTCCTAAATATCACGGGCAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGNGAAGATGTTGAAACGGGGTCGTCCTAAAAATAT-ATACNCNNTTNCGAAACTACNTCGTTCTATCCTNAGATNNAACCTACCATACTAAGGGTGTTTTATAATTTTATNAATTTGGGGCAATGAAAGCACGAGTTCCCTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTA----AAATNC-CCCGTAATA----AACGAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAATATCGATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAG-TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCNAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATANCATCTT
Reference ( family-576 ) : NNNNTACAAATAAAGCTATTTTATAAACTTTTTGTTNA--GAAA--CATGTNTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCGNTCAGA--A----TGTGAAGTNTTGTTGNTGTC---TA---TATC--GC-TCC-GCTC--TAAATTCTTCAACAACAACTGTCCTAAATATCACGGGCAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGNGAAGATGTTGAAACGGGGTCGTCCTAAAAATAT-ATACNCNNTTNCGAAACTACNTCGTTCTATCCTNAGATNNAACCTACCATACTAAGGGTGTTTTATAATTTTATNAATTTGGGGCAATGAAAGCACGAGTTCCCTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTA----AAATNC-CCCGTAATA----AACGAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAATATCGATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAG-TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCNAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATANCATCTT
gi|1 : TACAAATAAAGCTATTTTACAAACTTTTTGTTCA--CAAA--CATGTGTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCATTCAGA--A----TGTGAAGTGTTATTGATGTCAAATA---TATT--GCGTCTTGCTC--TGAATGCTACAACAACAACTATT-TAAAT----CAGATAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGAGAAGATGTTGAAACGGGGTCATC-----------ATACGCGATTGTGAAACTACATCATTTTATCCTAAGATTTAACCTACCATACTAAGGGTGTTTTATAGTTTTATCAATTTGAGGCAATGAAAGCATGAGTTCCCTGTGTAAGTTGTGCACTTATTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTTCGGTAATTTT-CCGGTAATA----AGCAAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAA-ATCAATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAG-TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCCAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATAGCATCTT
gi|10 : accaTACAAATAAAGCTATTTTACAAACTTTTTTGTAAT-GAAA--CATG----CCAATTTTTG-TTTTGTA---ATATGTAAATTGCGTTTGGAG-A----TGg
gi|11 : ctaaatctAAATCTATTGTAAT--AAAA--TATGTATTTT--GTTCTGGTTCTGTT---ATATAGATTTTGAGATCAGATGA----TGT
gi|12 : tgcaaccttataaatcgAATAAAGCAATTTTATAA---TTTCCTTAA--TAAAAGCATGCATTTT--TTTCCGCTTTTGTA---ATATGGATGTTGCAATCAGA--A----
gi|14 : atcatAGTCGTGCACTCACTAGGTATAAAATGACTATATA----TGCTATCATACT---
gi|15 : tcT--TTTCTGCATCTGTA---TTATGGATTTTGAGATCAGA--A----GGTGAATTGTTATTtca
gi|16 : TATAATTTTATGAATTTAGGACAATGAAAGAACGAGATCCCTTTGTACGTa
gi|17 : AAAACACGAGTTTCCCGTGGTAGTTGTGCACTTGATTTGTATAAAATGAC
gi|18 : ACAAACAAGGCTATTTTATGAACTTTCTGTT
gi|2 : cAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGGGAAGATGTTGAAACGGGGTCATCNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------TTTATCAATTTCAGGCAATGAAAGCATGAGTTCCCTGTGTAAGTTGTGCATTTATTTGGTATAGAATGACTAGATAAATCTGCTATCACACT---NNNNN----NNNNNN-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCGAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATATCATCTTtctgtaatgagtgttttt
gi|3 : taccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGGCCA-GA-ATG--AATGCACAGA----------AATTACAAAATAAAAACATGGTTTCCCAAGTGAAGATGTTGTAATGAGGTTGTCTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAATTTGGGACAATAAAAGCATGAGTTGCTTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAATTATGCTATCACACT---A--------AAATACACCCATAGTACAGTAATAAAGTGCATTCAGAAACTGTTGAGAAATGGTTTCAC
gi|4 : tttaaatattaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaTGTTAAAACGGGACCGTCCTAAAAATATTATACTCTTTTTCTAAACTACTTTGTTCTATTTTTAGATGGAACCT----------------TTTATAACTTTA--------AGGTAATGAAAGCACCAGTTTCCTGTGTCA----TGCTCTTACTAGGGAGAAAATGACTTAATAAACCTGCTTTCATACTTAAATTTA----AAATT-----GGAAT-----GACGTAGT---TTCACAAAA---TTGG-ATTGGATTTATAAAATATCGA
gi|5 : TATGAATAAAGCTATGCTGTAAACTGTTTATGAC--GAAA--CTTGTCTT-T--TTTCTACTTCTGTA---ATA-----TTTGTGGTCAGA--A----GATGAAGAGCTGTTGTTGCC---TA---CATT--G---CC-GCTC--CCAATattctactaa
gi|6 : gtaagtccaatagtttaggataaattgtgaatgttatttTATAAATAAAGTTATTTTATGAACTTTTTGTCCA--GAAA--CATGTTTTCA--TTTCTGTTCCTGTA---ATGCGTGTTTTACAGTCAGA--A----TGT----TCTTGTCGAT------TA---AATC--GC-TTC-GCGCGATAAATTCATTAGCAACAACTGTCCTAAATATCAC-AGCAAGGATATGATAATGTACATAAT-----CAAAATATCAAAaccacacacatttatcgggtcattcttcaatgaatgtgcacag
gi|7 : gATAAAACAATTTGATGTTTATTTTGTTT---GAAA--AATGTATTCT--TTCTTGCTCCTGTATTCATATTTATTTTGCGTTCAGA--A----AGTGAAGTTTTGTTGCTGTC---TACTTTATCGTGC-TCC-ATTC--TAAAGTTTTCAACAAC
gi|8 : taatcgtaaatTTACAAAATTGGGACAATAAGAGCACAAGATCCCTTTGTAAGTTATGCACTT------TCTACGACGACTAGATAGATATGCTTTTACACC---A--TA----AAACAC-CCCATA
gi|9 : AATAAAGTAATTTTATAA---TTTTATTTAATGAAG--CATGCCTTTT--CTCCCGCTTATGTT---ATATGGATGTTGCAATCAGA--AGAACTGTGGACTTTtacgg
blockSeqs : A TAAT AG TA C AA TTC T T AGAACT T G T GC . CTTT GTGC . GA C ATCAC A T AT GCCTGCA G CTAAAAATATT N NN NNN N N NN NNNNNNNNNNNNNNNN AT TG A AC A A C TAAATTTA ACA N ACAGT NNN N N N N NNNNNNNNNN G T
blockSeqs : A AAT . CA T . . G A TGAT G G A GT . C GC . . G . . AT T NNNNNNNNNN N NN NNN N N NN NNNNNNNNNNNNNN NN TC C GA T A A NNNNN NN C N GCA T A T
blockSeqs : A AT . TC T . . G A GAT G C C . . A G . . . . . . TNNNNNNNNN T TT TCT T T GG . AC TA G AT T A C ATA AC C . . . .
blockSeqs : A AA . TT C . . G A AG C T . CA G AC T G A A T .
blockSeqs : A AC . TA C . . T G AG . T . . AC A . .
blockSeqs : T CA . CC T . . T G AT . .
blockSeqs : . T . . . . . G T AA
blockSeqs : . . . . A
blockSeqCons : ATTTA*******
originalCons : NNNNTACAAATAAAGCTATTTTATAAACTTTTTGTTNA--GAAA--CATGTNTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCGNTCAGA--A----TGTGAAGTNTTGTTGNTGTC---TA---TATC--GC-TCC-GCTC--TAAATTCTTCAACAACAACTGTCCTAAATATCACGGGCAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGNGAAGATGTTGAAACGGGGTCGTCCTAAAAATAT-ATACNCNNTTNCGAAACTACNTCGTTCTATCCTNAGATNNAACCTACCATACTAAGGGTGTTTTATAATTTTATNAATTTGGGGCAATGAAAGCACGAGTTCCCTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTA----AAATNC-CCCGTAATA----AACGAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAATATCGATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAG-TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCNAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATANCATCTT
finalCons : NNNNTACAAATAAAGCTATTTTATAAACTTTTTGTTNA--GAAA--CATGTNTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCGNTCAGA--A----TGTGAAGTNTTGTTGNTGTC---TA---TATC--GC-TCC-GCTC--TAAATTCTTCAACAACAACTGTCCTAAATATCACGGGCAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGNGAAGATGTTGAAACGGGGTCGTCCTAAAAATAT-ATACNCNNTTNCGAAACTACNTCGTTCTATCCTNAGATNNAACCTACCATACTAAGGGTGTTTTATAATTTTATNAATTTGGGGCAATGAAAGCACGAGTTCCCTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAAATCTGCTATCACACTATTTA-------AAATNC-CCCGTAATA----AACGAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAATATCGATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAG-TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCNAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATANCATCTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGCATCACCTGTTAGTCCAATAATTAAAGGATAAAATATTTAATACCGATTATCTA
Alignments
lowQualScore : 1111 11111111 111 1111 11111 1 11 1 222222 1 11 2222222 33333333333 4444444444444444 333333333333 111 22222 1 2 1111111111
lowQualScore : 0 4 0 6666 66 33 2 66 0 777 1 1 11111111 2 1 1 33 777 8888 66666 0 33 0 5 777777 7 0 33 6666666 1 77777777777 1 22 222 1 1 22 9999999999999999 11 55 1 11 1 1 2 777777777777 444 2 77777 0 777 5 5 0 0 0000000000 1 1
lowQualScore : . . . .... .. .. . .. . ... . . ........ . . . .. ... .... ..... . .. . . ...... . . .. ....... . ........... . .. ... . . .. ................ .. .. . .. . . . ............ ... . ..... . ... . . . . .......... . .
lowQualScore : 8 8 9 2222 99 66 2 11 1 888 1 0 33333333 5 0 0 22 555 8888 22222 0 88 8 0 333333 0 0 88 5555555 0 22222222222 0 00 222 0 0 00 8888888888888888 66 00 0 99 9 7 5 777777777777 444 2 00000 8 222 8 8 7 0 0000000000 0 0
consensus : NNNNTACAAATAAAGCTATTTTATAAACTTTTTGTTNA--GAAA--CATGTNTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCGNTCAGA--A----TGTGAAGTNTTGTTGNTGTC---TA---TATC--GC-TCC-GCTC--TAAATTCTTCAACAACAACTGTCCTAAATATCACGGGCAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGNGAAGATGTTGAAACGGGGTCGTCCTAAAAATAT-ATACNCNNTTNCGAAACTACNTCGTTCTATCCTNAGATNNAACCTACCATACTAAGGGTGTTTTATAATTTTATNAATTTGGGGCAATGAAAGCACGAGTTCCCTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTA----AAATNC-CCCGTAATA----AACGAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAATATCGATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAG-TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCNAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATANCATCTT
Reference ( family-576 ) : NNNNTACAAATAAAGCTATTTTATAAACTTTTTGTTNA--GAAA--CATGTNTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCGNTCAGA--A----TGTGAAGTNTTGTTGNTGTC---TA---TATC--GC-TCC-GCTC--TAAATTCTTCAACAACAACTGTCCTAAATATCACGGGCAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGNGAAGATGTTGAAACGGGGTCGTCCTAAAAATAT-ATACNCNNTTNCGAAACTACNTCGTTCTATCCTNAGATNNAACCTACCATACTAAGGGTGTTTTATAATTTTATNAATTTGGGGCAATGAAAGCACGAGTTCCCTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTA----AAATNC-CCCGTAATA----AACGAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAATATCGATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAG-TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCNAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATANCATCTT
gi|1 : TACAAATAAAGCTATTTTACAAACTTTTTGTTCA--CAAA--CATGTGTTCT--TTTCTGCTTCTGTA---ATATGGATTTTGCATTCAGA--A----TGTGAAGTGTTATTGATGTCAAATA---TATT--GCGTCTTGCTC--TGAATGCTACAACAACAACTATT-TAAAT----CAGATAAAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGAGAAGATGTTGAAACGGGGTCATC-----------ATACGCGATTGTGAAACTACATCATTTTATCCTAAGATTTAACCTACCATACTAAGGGTGTTTTATAGTTTTATCAATTTGAGGCAATGAAAGCATGAGTTCCCTGTGTAAGTTGTGCACTTATTTGGTATAAAATGACTAGATAAATCTGCTATCACACT---ATTTTCGGTAATTTT-CCGGTAATA----AGCAAAGTGCGTTCAGAAACTGTTTGGAATTGGTTTCACAAAA-ATCAATCACAAATACCATTGTTTATAGACAACTTTTTTAAACACTTAATTCTAG-TTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCCAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATAGCATCTT
gi|10 : accaTACAAATAAAGCTATTTTACAAACTTTTTTGTAAT-GAAA--CATG----CCAATTTTTG-TTTTGTA---ATATGTAAATTGCGTTTGGAG-A----TGg
gi|11 : ctaaatctAAATCTATTGTAAT--AAAA--TATGTATTTT--GTTCTGGTTCTGTT---ATATAGATTTTGAGATCAGATGA----TGT
gi|12 : tgcaaccttataaatcgAATAAAGCAATTTTATAA---TTTCCTTAA--TAAAAGCATGCATTTT--TTTCCGCTTTTGTA---ATATGGATGTTGCAATCAGA--A----
gi|14 : atcatAGTCGTGCACTCACTAGGTATAAAATGACTATATA----TGCTATCATACT---
gi|15 : tcT--TTTCTGCATCTGTA---TTATGGATTTTGAGATCAGA--A----GGTGAATTGTTATTtca
gi|16 : TATAATTTTATGAATTTAGGACAATGAAAGAACGAGATCCCTTTGTACGTa
gi|17 : AAAACACGAGTTTCCCGTGGTAGTTGTGCACTTGATTTGTATAAAATGAC
gi|18 : ACAAACAAGGCTATTTTATGAACTTTCTGTT
gi|2 : cAGA-ATG--AATGCGCAGAGCCTGCACAAAACTTCAAACCAAAAACATGGCTTCCCAAGGGAAGATGTTGAAACGGGGTCATCNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------TTTATCAATTTCAGGCAATGAAAGCATGAGTTCCCTGTGTAAGTTGTGCATTTATTTGGTATAGAATGACTAGATAAATCTGCTATCACACT---NNNNN----NNNNNN-NNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAACAAATGATGATGTAGAAAATTGCAAGTGGAATACTTACAGTTTGAGATTCATCCCCTGGTACAGGTATGCCCCAATGCAGACGAGATTTTTGACGGGATACAGACAAGTCCGGAAGGATAGACACCCATCTACGCACCATGGGCTCAAACAAGCTGGGCTGGATTGCTGTCATTATTTATATAATTGCTCTTGTCTGATTTATTAACAACATAAATAACTGTTCTGAACCGCCTTATTTACAACATAAATAATTGTTCTGAACCAACTTATTTACAACANNNNNNNNNNACTTATTCACAACATGAATAATTGTTCTGAACTGACTTACATGTATTTACAACATAAATAACTGTTCTGAACCGACTAACATGTATTTACAACAAAAGTAAATGTTTTGATCCGTCTTATTTACAATATTATTCTGCGGATAAAGAGACAAGTGCTTCTTATGTACATTTGACAGAGGATAGAATCACGTTATCTTTCTTGAACCGAGAATCTTAGAAACTTCAGGTAAATGATATTAGGACAGCACTTTAGACGGCTATTTCATGGCGGTCACTGAAAGGTATATCATCTTtctgtaatgagtgttttt
gi|3 : taccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGGGCCA-GA-ATG--AATGCACAGA----------AATTACAAAATAAAAACATGGTTTCCCAAGTGAAGATGTTGTAATGAGGTTGTCTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAATTTGGGACAATAAAAGCATGAGTTGCTTGTGTAAGTTGTGCACTTACTTGGTATAAAATGACTAGATAATTATGCTATCACACT---A--------AAATACACCCATAGTACAGTAATAAAGTGCATTCAGAAACTGTTGAGAAATGGTTTCAC
gi|4 : tttaaatattaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaTGTTAAAACGGGACCGTCCTAAAAATATTATACTCTTTTTCTAAACTACTTTGTTCTATTTTTAGATGGAACCT----------------TTTATAACTTTA--------AGGTAATGAAAGCACCAGTTTCCTGTGTCA----TGCTCTTACTAGGGAGAAAATGACTTAATAAACCTGCTTTCATACTTAAATTTA----AAATT-----GGAAT-----GACGTAGT---TTCACAAAA---TTGG-ATTGGATTTATAAAATATCGA
gi|5 : TATGAATAAAGCTATGCTGTAAACTGTTTATGAC--GAAA--CTTGTCTT-T--TTTCTACTTCTGTA---ATA-----TTTGTGGTCAGA--A----GATGAAGAGCTGTTGTTGCC---TA---CATT--G---CC-GCTC--CCAATattctactaa
gi|6 : gtaagtccaatagtttaggataaattgtgaatgttatttTATAAATAAAGTTATTTTATGAACTTTTTGTCCA--GAAA--CATGTTTTCA--TTTCTGTTCCTGTA---ATGCGTGTTTTACAGTCAGA--A----TGT----TCTTGTCGAT------TA---AATC--GC-TTC-GCGCGATAAATTCATTAGCAACAACTGTCCTAAATATCAC-AGCAAGGATATGATAATGTACATAAT-----CAAAATATCAAAaccacacacatttatcgggtcattcttcaatgaatgtgcacag
gi|7 : gATAAAACAATTTGATGTTTATTTTGTTT---GAAA--AATGTATTCT--TTCTTGCTCCTGTATTCATATTTATTTTGCGTTCAGA--A----AGTGAAGTTTTGTTGCTGTC---TACTTTATCGTGC-TCC-ATTC--TAAAGTTTTCAACAAC
gi|8 : taatcgtaaatTTACAAAATTGGGACAATAAGAGCACAAGATCCCTTTGTAAGTTATGCACTT------TCTACGACGACTAGATAGATATGCTTTTACACC---A--TA----AAACAC-CCCATA
gi|9 : AATAAAGTAATTTTATAA---TTTTATTTAATGAAG--CATGCCTTTT--CTCCCGCTTATGTT---ATATGGATGTTGCAATCAGA--AGAACTGTGGACTTTtacgg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GGCATCACCTGTTAGTCCAATAATTAAAGGATAAAATATTTAATACCGATTATCTA