lowQualScore : 111 33333333 111111 1 11111111111111 1111111111111111111 1111111111111111
lowQualScore : 3333 22 888888 1 22 5 666 1 1 1 777777777777 444 6 1 444 77777777 222 1 7 3 3 1 3333 22 3 77777 3333 22 22 1 1 555555 333333 2 6 55555 4 66666666666666 333 7777777777777777777 5555555555555555 1 3
lowQualScore : .... .. ...... . .. . ... . . . ............ ... . . ... ........ ... . . . . . .... .. . ..... .... .. .. . . ...... ...... . . ..... . .............. ... ................... ................ . .
lowQualScore : 3333 11 888888 5 00 4 888 5 5 5 666666666666 666 0 5 444 00000000 666 5 4 1 2 6 4444 22 0 22222 7777 44 44 7 7 555555 999999 0 5 00000 0 44444444444444 999 2222222222222222222 6666666666666666 9 5
consensus : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATCAC--AA-TAT-C-C------------TGTGTAT---TATA-TTTT--CACT---CCNN-TG---CA-ATTTGTTGTAAAAACAAACT-A-ATT-G----ACA--CTGCGAA-----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGA------AACTTT----C-AACGTGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCGCCGAAACAACGATA
Reference ( gi|2 ) : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----TGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATTAC--TA-TAT-C-C------------TGTGTAT---TGTA-TTTT--TACT---CCCCCTG---CA-ATTTATTGTAAAAACAAACT-A-ATT-G----ACA--CTGTGAA-----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGA------AACTGT----C-AGCGTGATTACA-----CACGAGAGGTGTTACTATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCACCGAAACAACGATA
gi|1 : GAACTCTCCTGCATTGTGC----GGAAGTCTCCCGGAATCAAAGAGAAATTCT--G-----CGACTCCC-AGACGGGAGTCAAA--ATCTCCCGCAATTAC--TT-TAT-C-C------------TGTGTAT---TGTA-TTTT--TACT---CCCCCTG---CA-ATTTGTTGTAAAAACAAACT-A-ATT-G----ACA--CTGCGAA-----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGA------AACTTT----C-AACGTTATTACA-----CACGAAAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ACATA----------------TCTCGTAATCTTATCGGTTTTCATATAGTTTACCGCCAAAACAACGATA
gi|5 : tgtGAACTCTCCCGCATTGTGC----GGGAGTCTCACGGAATCAAAGAGAAAACCT--G-----TGACTCCT-GGACGAGAGTCAAA--ATCTCCCGCAATCAC--AA-TAT-C-C------------TGTGTAT---TATA-TTTT--CACT---CCAG-TG---CA-ATTTGTTGTAAAAACAAACT-T-ACT-G----ACA--CTGCGAA-----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAGATACATAAGTTCCGCCTTTATTGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGA------AACTTT----C-AACGTGATTACA-----CATGAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCTTGTAGTTTACCCCAAAAACAACGATA
gi|9 : tgtGAACTCTCCTGCATTGTGC----AGGAGTCTCCCGGAGTCAAAGAGAAAATCC--G-----CGACTCTCAGGACGGGAGTCAAA--ATCTCCCGCAATCAC--AA-TAT-C-C------------TGTGTAT---TATA-TTTT--CACT---CTAG-TG---CA-ATTTGTTGTAAAAACAAACA-A-ATT-G----ACA--CCGCGAA-----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGA------AACTTT----C-AACGTGATTACA-----CACGACAGGTGTTACAATCAA--------------GACT---AACTGGC-------------------ATATA----------------TCTCGTAG-----TTGGTTTTCATGTAGTTTACCGCTGAAACAAAGAT
gi|4 : gtGAACCTTCCTGCATTGTGC----AGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----CGACTTCC-AGATGGGAGTCAAA--ATCTCCCGCAATCAG--AA-TAT-C-C------------TGTGTAG---TATA-TTTT--CGCT----CCACTG---CA-ATTTGTTGTAA----AAACT-A-ATT-G----ACA--CTGCGAA-----TGTCAATTAT----TT--TCCTAAACA--TGACCAAGATACATAAGCTCTGCCTTTATCGGTTGAAAGCCATTC-AGAT-TGCAGATGA---CAGA------AACGTT----C-AATGTGATTTCA-----CATGAGAGGTGTTACAATAAAATTCGAAGCAGCACGACT---TACTGGC-------------------ATATA----------------TCTCGTAGTCTTATCAGTTTTCATATAGTTTATCGCCGAAACAATGGT
gi|6 : tGAACTCTTCTGCATTGTGT----GGGAGTCTCCCGGAATCAAAGAGAAAACTC--G-----CAACTCCT-AGATGGGAGTCAAA--ATTTTC-GCAATCAC--AA-TAT-C-C------------TGTGTAT---TATA-TTTT--CACT---CCAG-TG---CA-ATTTGT-GTAAAAACAAACT-A-ATT-G----ACA--TTGCGAA-----TGTCAATCAT----TG--TCTTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCTGTTGTAAGCCAATC-AGAC-TGCAGAAGATATCAGA------AACTTT----C-AACGTGATTACA-----CACAAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTCATAGTCTTATCGATTTTCATGTAGTTTACCTCCAAAACAATGATA
gi|11 : tgtGAACTCTCCCGCATTGTGT----GGGAGTCTCCCGGAATTGAAGAGAAAACCC--G-----CGACTCCC-AGACCGGAGTCAAA--ATCTCCCTCAATCAC--AA-TAT-A-C------------TGGGTAT---TATA-TTTT--CACT---CCAG-TG---CA-ATTTGTTGTAAAAACAAACT-A-ATT-G----AAA--CTGCGAA-----TATCAATGAT----TG--TCCTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGA------AACTTT----C-AATGTGATTACA-----CATGAGAGGTGTTACT----------------------T---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTGTCGGTTTTCACATAGTTTACCGCCAAAATAATGA
gi|13 : gtGAACTCCCCTGCATTGTGC----GGGAGTCTCCCGGAATTAAAGAGAAAATCT--G-----CGACTTCC-AGATGGGAGTCAAA--ATCTCCTGCAATCAC--AA-TAT-C-C------------TGTGTAT---TATA-TTTT--CACT---CCAC-TA---CA-GTTTGTTGTA--------------TT-G----ACA--CTGCGAA-----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAG---------CTCCACCTTTATCTGTTGTAAGCCAATC-AGAT-TCCAGATGATATCAGA------AACCTT----C-AACATAATTACA-----CACGAGAGGTGTTACAATCAAATT-GACACAGAACGACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCATATAGTTAACTGCCGAAACAg
gi|12 : gtGAACTCTCCCGTATTGTGA----GGGAGTCTCCTGGAATCAAAGAGAAAACCT--G-----CGACTCCT-GGACA-------------------CAATCAC--AG-TAT-C-C------------AGTGTAT---TAAA-TTTT--CGCT---CCAG-TG---CA-GTTCGTTGTAAAAACAAACT-A-GTT-G----ACA--CTGCGAA-----TGTCAAACAT----TG--TCCTAAACA--TGACCAAGATACATGAGC-----CTTTATCGGTTGTAAGTCAAAC-AGAT-TGCAGATGATATCAGA------AACTTT----C-AACGTGATTACA-----CACGAGAGGTGTTACAATTAAATTCGACACAGCAAGACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCATATAGTTTACTGCTGAAACAACAAggg
gi|15 : gtGAATTCTCACGCATTGTGC----GGGAGTCTTCCAGAATCAAAGAGAAAACCC--G-----CGACTCCC-AAACGGGAGTCCAA--ATCTCCCGCAATCAC--AA-TAT-C-C------------TGTGTAT---TATA-TTTT--CGCT----CCAGTG---CA-GTTTGTTGTAAAAACAAACT-A-ATT-G----ACA--CTGCGAA-----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCACCTTTCTCGGTTGTATG----TC-AGAT-TGCAGATAATATAAG-------AACTTT----C-AAAATGATTACA-----CACGAGAAGTGTTACAATCAAATTTGAAACAGCACAACC---AATTGGC-------------------ATA
gi|3 : tGAACTCTCCCGCATTGTGC----GAGAGTCTCCAGGAATCAAAGAGAAAACCT--G-----CAACTTCC-GGACGGGAGTCAAA--ATCTCCCACAATCAC--AA-TAT-C-C------------TGTGTAT---TATA-TTTT--CACT----CAAATG---CA-ATTTGTTGTAAAAA-AAACT-A-ATT-G----ACC--CTGCGAA-----TGTCAATTA-----TG--TCCTTAACA--TG-------T-----AGCTCGGCCTTTATTAGTAGTAAGCCAATC-AGAT-TGCAGATAATAT--------------------------TGATTACACATGTCATGATAGGTGTTAAAATAAAATTCCACACAGCACGACT---GATTGGC-------------------ATACATTGCTTTGTCGCAAATTCTCATAGTCTTATCGGTTTTCAT-TAGTTTACCGCCGAAAAAACGATAaa
gi|16 : gtGAAATCTCCCACATTGTGT----GGGAGTCTCCCTGTATCAAACAGAACACCT--GCGACTCGACTCCC-TGACAGGAGTCAGA--ATCTCCCGCAATCACAGTA-TATGC-CCATCCCTGATTATGTGTAT---TATA-TTTT--TACT----CCAGTG---CA-ATTTGTTGTAAAAACAAACT-A-ATT-G----ACA--TTGCAGA-----TG
gi|28 : catgtGAACCCTTCCGCATTGTTG----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACAACC-AGAAGGGAGTCAAA--ATCTCCCGCAATCAC--AC-TTT-C-C------------TCTGTAT---TATA-TTTT--CACT----CCAGTG---CA-ATTTGCTATAAAAACAAACT-atatcggaaactttcaaagtgattacacacaaggtgttaaaatcaaattcgacacagcatgactaattgacatatatctcgtagtcatattggttttcatatagtttaccaccgaaacaacgata
gi|23 : tgtGAACTCTCCTTCATTGTGT----GCGAGTCTCACGGAATCAAACAGAAAACCT--G-----CAAGTCCT-GGACAGGAGTCAAA--TCCTTCCACAATCAC--AA-TAT-C-T------------TGTGTAT---TATA-TTCC--AACT-------CTA---C------------ACAACAAA--------------------TGT-----------CAATCAT----GG--TCGTAAACA--TGACCCAGATATATAAGCTCCACCCTTg
gi|29 : gtGAACTCTCCCACATTGTGCTGGTGGGAGTCTCCTGGAATCCAAGATAAAATC-----------A------GGACAGAAGTC-AA--ATCTTTCGCAGTCAC--AA-AAT-C-C------------TGTGTAT---T----TCTT--TTCT---TC--------------TGTTGTAAAATCAAACT-GTATT-G----ACA--CTGTAAA-----TG
gi|31 : gtGAACTCTTCTGCATTGTGC----GGGAGTCTCCCGGAATC-----GAAGATCT--------T--CTTC---------AATCAGA--ATATCC---------------------------------TGTATAT---TCTA-TTTT--CACT----CCAATG---CA-ATTTGCTGTAAAA
gi|34 : tGAACTCTCCCGCATTGTGC----GAGTGTCTCCCTGAATCAAAGAGAAAATC
gi|18 : tgtGAACACTCCAGGCTTGTGT----GGAAGTCTTCAAGATTCAGA--------CT--G-----T----CCC-AGACATG--TTACATTATCTCATGCAAATGC--AAATAT-C--------------TGCATATAA-CGCAAGTTC--TA-T---C-----G----G-ATTTGTTTTAAAAACAAATT-T-ATTTG----ATA--CAGTTAAG----TGTCGGTCAT----GG-------ATCA--TAATTA---TACACAAGCTCCGCCCATATTTGTTTTCAACCAATC-AACT-TACTACTGATTTCA
gi|30 : cacgtAACTTTTCCGCATTGTTC----AGGAGTCTTCCGGAATCAAAGAGAAAACCT--G-----TGACTCTC-GGACGGGAGTCAAA--ATCTCCTGCAATTAC--TA-TAT-C-C------------TGTGTAC---TGTA-TTTT--TACT---ACCCCTG---CA-ATTTatcgtctcagataaatgccatgctcaatttttatcattccaatcagtcttgtggt
gi|22 : AACTCTCTCGCATTGTGT----GGGAGTCTCTCAGAAACAAAGTCTCAACCC--A-----TAAGTCAC-AGACGGGAGTCAAA--ATTTCCAA-AATCAC--AA-AAT-C-C------------TGT-TAA---GGT----TT--T--------CCATG-----------TTGTAAAAAAAAACTTA-ATT-G----ACA--CTGCTAG-----TGTCAATCAT----GA--TTCTAAACA--TGAACTATACATATAAACT-AGTCATTATGGGTAGTAAGCCAATC-AGAT-TGCAGAT
gi|20 : AACTTCCCCAAATTTTGT----GGGGGTCTCTTAGGTTCAAAGTTAAAA----------------------ATAGGTTACACA--ATCTTCCACAATCAC--AA-AGC-T-C------------T-----T---TGTA-TTTA--TGCA---TTGCCTG---TACATTTGTTGTAAAAACAGACT-TTCTT-G----ACA----GTCAAACTTTTGTCAGTCAC-----GAATTATAAACAAGTGTC--GGAAACATTAGCTCCTCCT--ATCAAATGTCAGCCAATC-AAAC-TGTTGCTGATTTAAGA------AA
gi|8 : gtaACTCTCCCGCATTGTGC----GGTAGTCTCCCGGAATCAAAGAGAAAACCC--G-----GGACTCCC-GTATGGGAGTCAAA--ATCTCCCACAATCAG--AA-TAT-C-C------------TGTGCAT---T------TT--CACT---CCAC-TG---CA-GTTTGTTGTAAAA-CAAACT-A-ATT-G----ACA--CTGCGAA-----TGTCAATCAT----TG--TTCTAAACA--TTACCAAGATACATAAGCTCCGCCTTTATTGGTTGTAAGCCAATC-AGAT-TGCAGATGAT---AGA------AA--------------TGATTTCA-----CACGGGAGGTGTTACAATCAAATTAGACACAGCACGACTATAAATTGGC-------------------ATATA----------------TCTCGTAGTTGTATCGGTTTTCATATAGTTTACCACCGAAACAAa
gi|14 : gtgtTCTCCCGCAGTGTGC----GGGAGTCTCC-GGGATCAAAGAGAAAACCT--G-----TGACTCCC-AGACGGGAGTCAGA--ATCTCCCGCAATCAC--AA-TAT-C-C------------TGTGCAT---TATA-ATTT--CACTTAACCCAGTG---CA-ATTTGTTGTAAAAACAAACT-A-ATT-G----ACA--CTGCAAA-----TGTCAATCAT----TG--ACCTAAAAA--TGACCAAGATACATAAGCTCTGCCATTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGA------AACTTT----C-AAC----TTTCA-----CACGAGAAGTGTTACAATCAA--------------GACT---TTTTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCTTGTAGTTTACCGCCGAAACAAaggt
gi|7 : CTTCCGCATTTCGG----GGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----CGACTTCC-AGACAGGAGTCAAA--ATCTCCCGCAATCAT--AA-TAT-C-C------------TGTGTAT---TATA-T------------------G---CA-ATTTGTTGTAAAAACAAACT-A-ATT-G----ACA--CTGCAAA-----TGTCAATTAT----TG--TCCTAAACA--TGAACAAGATACATAAGCTCCGCCTTTATTGGTTGTAAGTTTATC-AGAT-TGCAATTAATATCAGA------AACTTT----C-AACGTGATTACA-----C----------------TCAAATTCGACAGCGCACAACC---AAATGGCATCAATTGCTTTAACGCAAATATA----------------TCTCATAGTCTAATCGGTTTTCATTTG--TTACCATCAAAACGA
gi|19 : tgtgaaCTCCCGTATTGTGC----GGGAGTCTCTTGGAATCAGAGAGAAAATCA--G-----TGAGTCCC-GGACGGGAATCTAA--ATCTCTCCCAGTCAC--AA-TAT-C-C------------TATGTGT---TATA-TTTT--CACT---CCAC-TG---CA-ATTTGTTGTAAAAATAAACT-A-ATT-G----ATA--CTGCGAA-----TGTCAATCAT----TG--TCATAAACA--TGACCCAGACACATAAACTCCACCATTACCGGTTGCAAGCCAATC-AGAT-TGCAGATGATATCAGA------CAATCT----CAAACGTGATTACA-----CAAGAGAGGTGTTAta
gi|21 : CCTGCATTGTGC----TGGAGTCTCCTGGATTGAAAGTTAAAACCT--GCT---TG--TCCT-GGACAGGTTACATA--ATCTCCTGCAGTCAC---A-GAT-CTT------------TATGTATCAGTGCA-TTT-------------CCTGTGTTA-ATTTGTTATAAAAGCA---T-A-TCT-GTCACACA--CAGTAAAG----TGTCAGTCACAAAATG-----TAAAGA--TGAACCAGAAAAACTAGTTCCTCCAATATCAGTTATAAGCCATTC-
gi|10 : aCATAATGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--A-----AGTCTACT-GGACGGGAGTAAAT--ATCTCCCGCAATTAC--AA-TAT-C-C------------TGTGTAT---TGTA-TTTT--TACT---CCCCCTG---CA-ATTCGTTGTAAAAACAAACT-A-ATT-G----ACA--ATGCGAA-----TGTCAATC-----------------C---TGACCAAGATACATAAGCTCCACCTTAATCGGGTGTAAGCCAATC-TGAT-TGCAGATGATATCAGA------AACTTA----C-AACATGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGAACGACT---AACTGGC-------------------ATATT----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCAATGAAACAATGATA
gi|26 : ttGGAGTCTCCCAGAATCAAAGAGAAAACCCGAG-----CGA--CCC-AAATGGGATTCAAA--ATCTCCTGCAGTCAC--GG-TAT-T-G------------TGTGCAT---TATA-TT----------------------A-AC---------AAAC----T-A-ATT-G----ACA--CTGCGAA-----TGTCAGACAT----TG--TCGTAAACA--TAGCCCAGATACAAAAGCTCC
gi|17 : -GGATGGGAGTCAAA--ATCTCCCACAAT------------C-T------------TGTGTAT---T-TA-TAATAATGTT---TCACCTG-----------TTGTAAAAACAAACTTA-ATT-G----ACAAGTTGCAAA-----TGTCAATCAT----TA--TTGCAAACA--TGAACTGCATACATAAACTCCACCATTATCAGTTGTAAGCCAATC-AAAT-TGCAGATAATATCAGA------AG-TGTTGGAC-AACATGATTACA-----CACAAGA--TGTT-TTATCA------ACACAACATA--T---AATTGGC-------------------ATAAA----------------T
gi|24 : t-A-ATT-G----ACA--CTGCGAA-----TGTCAGTCTT----TG--TCCTAAACA--TGACCAAAATACATAAGCT--------------------CCAATC-AGATATGCAGATAATATCAG-------AACTTT----C-AACGTGTTCACA-----TGCGAGAGGTGTTtgctcaaacatatcataaaaaattatagttttaaggttttcacac
gi|25 : CCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAAATGATATCAGATTACACAA--G-------AGAG-GATTACA-----CACAAGAGGTGTTACAATCAAATTTGACACAGCATGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTTTTATCAGTTTTCATCTAGTTTACCGCCGAAACAACGATttttttgtggacaaaatcacactcacatggttggatttttacaaacaaaataaaa
gi|27 : TTTATTGGTTGTAAGCCAATC-AGAT-TGCAGACGATATCAGA------AACTTT----C-ATCGTGATTACA-----CACGAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCTTGTAGTTTAGTGCCGAAACAACGATA
gi|16 : AAACTAATTGACAT-TGCAGATGATATCGGA------AACTTT----C-AAAGTGATTACA-----CACAAG--GTGTTAAAATCAAATTCGACACAGCATGACT---AATTGAC-------------------ATATA----------------TCTCGTAGTCATATTGGTTTTCATATAGTTTACCACCGAAACAACGATA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|32 ): TGGAGTTCCCTAGATTGAAAGTGAAAATCCCATTTGTCCCAGAATGTTAGATAGTCTCTCGCAATCACACATCTCT
Unaligned ( gi|33 ): TGTTCCATTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 111 1111111111111111111 1111111111111111
lowQualScore : 3333 555 333333 0 1 33 1 222 1 777777777777 222 1 4444444 5555 222 1 0 3 1 1 1 3333 22 6666 3333 22 22 0 1 1 333 1 4444 44444 88888 0 0 1 333 6666666666666666666 4444444444444444 1
lowQualScore : .... ... ...... . . .. . ... . ............ ... . ....... .... ... . . . . . . .... .. .... .... .. .. . . . ... . .... ..... ..... . . . ... ................... ................ .
lowQualScore : 1111 000 777777 2 4 44 4 555 4 333333333333 555 5 6666666 9999 333 4 1 1 5 5 5 3333 11 3333 5555 33 33 3 6 7 333 9 0000 88888 44444 5 5 7 777 3333333333333333333 7777777777777777 2
consensus : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-CAATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCGCCGAAACAACGATA
Reference ( family-5681 ) : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCNN-TG-CAATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCGCCGAAACAACGATA
gi|1 : GAACTCTCCTGCATTGTGC----GGAAGTCTCCCGGAATCAAAGAGAAATTCT--G-----CGACTCCC-AGACGGGAGTCAAA--ATCTCCCGCAATTACTT-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-CAATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTTATTACA-----CACGAAAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ACATA----------------TCTCGTAATCTTATCGGTTTTCATATAGTTTACCGCCAAAACAACGATA
gi|10 : tgtCATAATGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--A-----AGTCTACT-GGACGGGAGTAAAT--ATCTCCCGCAATTACAA-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-CAATTCGTTGTAAAAACAAAC-T-A-ATT-G----ACA--ATGCGAA----TGTCAATC-----------------C---TGACCAAGATACATAAGCTCCACCTTAATCGGGTGTAAGCCAATC-TGAT-TGCAGATGATATCAGAAACTTA---C-A----ACATGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGAACGACT---AACTGGC-------------------ATATT----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCAATGAAACAATGATA
gi|11 : ttGAACTCTCCCGCATTGTGT----GGGAGTCTCCCGGAATTGAAGAGAAAACCC--G-----CGACTCCC-AGACCGGAGTCAAA--ATCTCCCTCAATCACAA-TAT---A-C------------TGGGTAT---TATAT-------TTTCACT----CCAG-TG-CAATTTGTTGTAAAAACAAAC-T-A-ATT-G----AAA--CTGCGAA----TATCAATGAT----TG--TCCTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ATGTGATTACA-----CATGAGAGGTGTTAC----------------------TT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTGTCGGTTTTCACATAGTTTACCGCCAAAATAATGA
gi|12 : gtGAACTCTCCCGTATTGTGA----GGGAGTCTCCTGGAATCAAAGAGAAAACCT--G-----CGACTCCT-GGACA-------------------CAATCACAG-TAT---C-C------------AGTGTAT---TAAAT-------TTTCGCT----CCAG-TG-CAGTTCGTTGTAAAAACAAAC-T-A-GTT-G----ACA--CTGCGAA----TGTCAAACAT----TG--TCCTAAACA--TGACCAAGATACATGAGC-----CTTTATCGGTTGTAAGTCAAAC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATTAAATTCGACACAGCAAGACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCATATAGTTTACTGCTGAAACAACAAg
gi|13 : gtGAACTCCCCTGCATTGTGC----GGGAGTCTCCCGGAATTAAAGAGAAAATCT--G-----CGACTTCC-AGATGGGAGTCAAA--ATCTCCTGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAC-TA-CAGTTTGTTGTA---------------TT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAG---------CTCCACCTTTATCTGTTGTAAGCCAATC-AGAT-TCCAGATGATATCAGAAACCTT---C-A----ACATAATTACA-----CACGAGAGGTGTTACAATCAAATT-GACACAGAACGACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCATATAGTTAACTGCCGAAACA
gi|14 : gtTCTCCCGCAGTGTGC----GGGAGTCTCC-GGGATCAAAGAGAAAACCT--G-----TGACTCCC-AGACGGGAGTCAGA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGCAT---TATAA-------TTTCACTTAACCCAG-TG-CAATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCAAA----TGTCAATCAT----TG--ACCTAAAAA--TGACCAAGATACATAAGCTCTGCCATTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----AC----TTTCA-----CACGAGAAGTGTTACAATCAA--------------GACT---TTTTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCTTGTAGTTTACCGCCGAAACAAggg
gi|15 : GAATTCTCACGCATTGTGC----GGGAGTCTTCCAGAATCAAAGAGAAAACCC--G-----CGACTCCC-AAACGGGAGTCCAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCGCT----CCAG-TG-CAGTTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCACCTTTCTCGGTTGTATG----TC-AGAT-TGCAGATAATATAAG-AACTTT---C-A----AAATGATTACA-----CACGAGAAGTGTTACAATCAAATTTGAAACAGCACAACC---AATTGGC-------------------ATA
gi|16 : tGAAATCTCCCACATTGTGT----GGGAGTCTCCCTGTATCAAACAGAACACCT--GCGACTCGACTCCC-TGACAGGAGTCAGA--ATCTCCCGCAATCACAG-TATATGC-CCATCCCTGATTATGTGTAT---TATAT-------TTTTACT----CCAG-TG-CAATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--TTGCAGA----TGaa
gi|16 : catgtAAACTAATTGACAT-TGCAGATGATATCGGAAACTTT---C-A----AAGTGATTACA-----CACAAG--GTGTTAAAATCAAATTCGACACAGCATGACT---AATTGAC-------------------ATATA----------------TCTCGTAGTCATATTGGTTTTCATATAGTTTACCACCGAAACAACGATAatatcggaaactttcaaagtgattacacacaaggtgttaaaatcaaattcgacacagcatgactaattgacatatatctcgtagtcatattggttttcatatagtttaccaccgaaacaacgata
gi|17 : catgtgaaatctcccacattgtgtgggagtctccctgtatcaaacagaacacctgcgactcgactccctgacaggagtcagaatctcccgcaatcacagtatatgcccatccctgattatgtgtattatatttttactccagtgcaatttgttgtaaaaac-GGATGGGAGTCAAA--ATCTCCCACAATC-------------T------------TGTGTAT---T-TATAATAATGTTTCACC-----------------TGTTGTAAAAACAAAC-TTA-ATT-G----ACAAGTTGCAAA----TGTCAATCAT----TA--TTGCAAACA--TGAACTGCATACATAAACTCCACCATTATCAGTTGTAAGCCAATC-AAAT-TGCAGATAATATCAGAAGTGTTGGAC-A----ACATGATTACA-----CACAAGATGTTTTA---------TCAACACAACATA--T---AATTGGC-------------------ATAAA----------------T
gi|18 : tGAACACTCCAGGCTTGTGT----GGAAGTCTTCAAGATTCAGA--------CT--G---------TCCC-AGACATG--TTACATTATCTCATGCAAATGCAAATAT---C----------------TGCAT----ATAA-------CGCAAGT----TCTA-TC-GGATTTGTTTTAAAAACAAAT-T-T-ATTTG----ATA--CAGTTAAG---TGTCGGTCAT----GG-------ATCA--TAATTA---TACACAAGCTCCGCCCATATTTGTTTTCAACCAATC-AACT-TACTACTGATTTCAtgctcaaacatatcataaaaaattatagttttaaggttttcacac
gi|19 : cacgtCTCCCGTATTGTGC----GGGAGTCTCTTGGAATCAGAGAGAAAATCA--G-----TGAGTCCC-GGACGGGAATCTAA--ATCTCTCCCAGTCACAA-TAT---C-C------------TATGTGT---TATAT-------TTTCACT----CCAC-TG-CAATTTGTTGTAAAAATAAAC-T-A-ATT-G----ATA--CTGCGAA----TGTCAATCAT----TG--TCATAAACA--TGACCCAGACACATAAACTCCACCATTACCGGTTGCAAGCCAATC-AGAT-TGCAGATGATATCAGACAATCT---CAA----ACGTGATTACA-----CAAGAGAGGTGTTAatcgtctcagataaatgccatgctcaatttttatcattccaatcagtcttgtggt
gi|2 : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----TGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATTACTA-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-CAATTTATTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGTGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTGT---C-A----GCGTGATTACA-----CACGAGAGGTGTTACTATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCACCGAAACAACGATA
gi|20 : AACTTCCCCAAATTTTGT----GGGGGTCTCTTAGGTTCAAAGTTAAAA----------------------ATAGGTTACACA--ATCTTCCACAATCACAA-AGC---T-C------------TTTGTAT---T-TAT-------G--CATTG---CCTG-TA-CA-TTTGTTGTAAAAACAGACTT-T-CTT-G----ACA--GT-CAAACTTTTGTCAGTCA-----CGAATTATAAACAAGTGTC--GGAAACATTAGCTCCTCC--TATCAAATGTCAGCCAATC-AAAC-TGTTGCTGATTTAAGAAA
gi|21 : gtaCCTGCATTGTGC----TGGAGTCTCCTGGATTGAAAGTTAAAACCT--G-----CTTGTCCT-GGACAGGTTACATA--ATCTCCTGCAGTCACAG--AT---CTT------------TATGTATCAGTGCAT-------T-----T----CCTG-TGTTAATTTGTTATAAAAGCA----T-A-TCT-GTCACACA--CAGTAAAG---TGTCAGTCACAAAATG-----TAAAGA--TGAACCAGAAAAACTAGTTCCTCCAATATCAGTTATAAGCCATTC-a
gi|22 : aAACTCTCTCGCATTGTGT----GGGAGTCTCTCAGAAACAAAGTCTCAACCC--A-----TAAGTCAC-AGACGGGAGTCAAA--AT-TTCCAAAATCACAA-AAT---C-C------------TGT-TA-----AGGT-------TTTC---------------CA---TGTTGTAAAAAAAAACTT-A-ATT-G----ACA--CTGCTAG----TGTCAATCAT----GA--TTCTAAACA--TGAACTATACATATAAACT-AGTCATTATGGGTAGTAAGCCAATC-AGAT-TGCAGAT
gi|23 : GAACTCTCCTTCATTGTGT----GCGAGTCTCACGGAATCAAACAGAAAACCT--G-----CAAGTCCT-GGACAGGAGTCAAA--TCCTTCCACAATCACAA-TAT---C-T------------TGTGTAT---TATAT-------TCCAACT----C----TA-C-----------ACAACAAA---------------------TGTCAA----T------CAT----GG--TCGTAAACA--TGACCCAGATATATAAGCTCCACCCTT
gi|24 : gt-A-ATT-G----ACA--CTGCGAA----TGTCAGTCTT----TG--TCCTAAACA--TGACCAAAATACATAAGCT--------------------CCAATC-AGATATGCAGATAATATCAG-AACTTT---C-A----ACGTGTTCACA-----TGCGAGAGGTGTT
gi|25 : CCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAAATGATATCAGA---TTA---C-ACAAGAGAGGATTACA-----CACAAGAGGTGTTACAATCAAATTTGACACAGCATGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTTTTATCAGTTTTCATCTAGTTTACCGCCGAAACAACGATttttttgtggacaaaatcacactcacatggttggatttttacaaacaaaataaaa
gi|26 : GGAGTCTCCCAGAATCAAAGAGAAAACCCGAG-----CGA--CCC-AAATGGGATTCAAA--ATCTCCTGCAGTCACGG-TAT---T-G------------TGTGCAT---TATAT-------T--------------------------------AACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAGACAT----TG--TCGTAAACA--TAGCCCAGATACAAAAGCTCC
gi|27 : TTTATTGGTTGTAAGCCAATC-AGAT-TGCAGACGATATCAGAAACTTT---C-A----TCGTGATTACA-----CACGAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCTTGTAGTTTAGTGCCGAAACAACGATA
gi|28 : GAACCCTTCCGCATTGTTG----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACAACC-AGAAGGGAGTCAAA--ATCTCCCGCAATCACAC-TTT---C-C------------TCTGTAT---TATAT-------TTTCACT----CCAG-TG-CAATTTGCTATAAAAACAAAC-T-
gi|29 : tgtGAACTCTCCCACATTGTGCTGGTGGGAGTCTCCTGGAATCCAAGATAAAATC-----------A------GGACAGAAGTC-AA--ATCTTTCGCAGTCACAA-AAT---C-C------------TGTGTAT---T-TCT-------TTTC-TT----C------------TGTTGTAAAATCAAAC-T-GTATT-G----ACA--CTGTAAA----TGg
gi|3 : gtGAACTCTCCCGCATTGTGC----GAGAGTCTCCAGGAATCAAAGAGAAAACCT--G-----CAACTTCC-GGACGGGAGTCAAA--ATCTCCCACAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CAAA-TG-CAATTTGTTGTAAAAA-AAAC-T-A-ATT-G----ACC--CTGCGAA----TGTCAATTA-----TG--TCCTTAACA--TG-------T-----AGCTCGGCCTTTATTAGTAGTAAGCCAATC-AGAT-TGCAGATAATAT-----------------------TGATTACACATGTCATGATAGGTGTTAAAATAAAATTCCACACAGCACGACT---GATTGGC-------------------ATACATTGCTTTGTCGCAAATTCTCATAGTCTTATCGGTTTTCAT-TAGTTTACCGCCGAAAAAACGATA
gi|30 : gtAACTTTTCCGCATTGTTC----AGGAGTCTTCCGGAATCAAAGAGAAAACCT--G-----TGACTCTC-GGACGGGAGTCAAA--ATCTCCTGCAATTACTA-TAT---C-C------------TGTGTAC---TGTAT-------TTTTACTA---CCCC-TG-CAATTT
gi|31 : GAACTCTTCTGCATTGTGC----G----------GGAGTC-------------------------TCCC-GGA-----ATCGAAG-ATCTTCTTCAATCAGAA-TAT---C-C------------TGTATAT---TCTAT-------TTTCACT----CCAA-TG-CAATTTGCTGTAAAA
gi|34 : tGAACTCTCCCGCATTGTGC----GAGTGTCTCCCTGAATCAAAGAGAAAATC
gi|4 : tgtGAACCTTCCTGCATTGTGC----AGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----CGACTTCC-AGATGGGAGTCAAA--ATCTCCCGCAATCAGAA-TAT---C-C------------TGTGTAG---TATAT-------TTTCGCT----CCAC-TG-CAATTTGTTGTAA----AAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATTAT----TT--TCCTAAACA--TGACCAAGATACATAAGCTCTGCCTTTATCGGTTGAAAGCCATTC-AGAT-TGCAGATGA---CAGAAACGTT---C-A----ATGTGATTTCA-----CATGAGAGGTGTTACAATAAAATTCGAAGCAGCACGACT---TACTGGC-------------------ATATA----------------TCTCGTAGTCTTATCAGTTTTCATATAGTTTATCGCCGAAACAATGGT
gi|5 : tGAACTCTCCCGCATTGTGC----GGGAGTCTCACGGAATCAAAGAGAAAACCT--G-----TGACTCCT-GGACGAGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-CAATTTGTTGTAAAAACAAAC-T-T-ACT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAGATACATAAGTTCCGCCTTTATTGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CATGAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCTTGTAGTTTACCCCAAAAACAACGATA
gi|6 : tgtGAACTCTTCTGCATTGTGT----GGGAGTCTCCCGGAATCAAAGAGAAAACTC--G-----CAACTCCT-AGATGGGAGTCAAA--ATTTTC-GCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-CAATTTGT-GTAAAAACAAAC-T-A-ATT-G----ACA--TTGCGAA----TGTCAATCAT----TG--TCTTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCTGTTGTAAGCCAATC-AGAC-TGCAGAAGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACAAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTCATAGTCTTATCGATTTTCATGTAGTTTACCTCCAAAACAATGATA
gi|7 : tgtCTTCCGCATTTCGG----GGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----CGACTTCC-AGACAGGAGTCAAA--ATCTCCCGCAATCATAA-TAT---C-C------------TGTGTAT---TATA------------------------TG-CAATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCAAA----TGTCAATTAT----TG--TCCTAAACA--TGAACAAGATACATAAGCTCCGCCTTTATTGGTTGTAAGTTTATC-AGAT-TGCAATTAATATCAGAAACTTT---C-A----ACGTGATTACA-----C----------------TCAAATTCGACAGCGCACAACC---AAATGGCATCAATTGCTTTAACGCAAATATA----------------TCTCATAGTCTAATCGGTTTTCATTTG--TTACCATCAAAACGA
gi|8 : tgtgaaACTCTCCCGCATTGTGC----GGTAGTCTCCCGGAATCAAAGAGAAAACCC--G-----GGACTCCC-GTATGGGAGTCAAA--ATCTCCCACAATCAGAA-TAT---C-C------------TGTGCAT---T------------TTCACT----CCAC-TG-CAGTTTGTTGTAAAA-CAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TTCTAAACA--TTACCAAGATACATAAGCTCCGCCTTTATTGGTTGTAAGCCAATC-AGAT-TGCAGATGAT---AGAAA-----------------TGATTTCA-----CACGGGAGGTGTTACAATCAAATTAGACACAGCACGACTATAAATTGGC-------------------ATATA----------------TCTCGTAGTTGTATCGGTTTTCATATAGTTTACCACCGAAACAAta
gi|9 : gtgtGAACTCTCCTGCATTGTGC----AGGAGTCTCCCGGAGTCAAAGAGAAAATCC--G-----CGACTCTCAGGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CTAG-TG-CAATTTGTTGTAAAAACAAAC-A-A-ATT-G----ACA--CCGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGACAGGTGTTACAATCAA--------------GACT---AACTGGC-------------------ATATA----------------TCTCGTAG-----TTGGTTTTCATGTAGTTTACCGCTGAAACAAAGATaggt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): TGGAGTTCCCTAGATTGAAAGTGAAAATCCCATTTGTCCCAGAATGTTAGATAGTCTCTCGCAATCACACATCTCT
Unaligned ( gi|33 ): TGTTCCATTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1111111111111111111 1111111111111111
lowQualScore : 3333 555 333333 0 1 33 1 222 1 777777777777 222 1 4444444 5555 888 1 33333 3 1 1 1 3333 22 6666 3333 22 22 0 1 1 333 1 4444 44444 88888 0 0 1 333 6666666666666666666 4444444444444444 1
lowQualScore : .... ... ...... . . .. . ... . ............ ... . ....... .... ... . ..... . . . . .... .. .... .... .. .. . . . ... . .... ..... ..... . . . ... ................... ................ .
lowQualScore : 1111 000 777777 2 4 44 4 555 4 333333333333 555 5 6666666 9999 555 4 66666 1 5 5 5 3333 11 3333 5555 33 33 3 6 7 333 9 0000 88888 44444 5 5 7 777 3333333333333333333 7777777777777777 2
consensus : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCGCCGAAACAACGATA
Reference ( family-5681 ) : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCGCCGAAACAACGATA
gi|1 : GAACTCTCCTGCATTGTGC----GGAAGTCTCCCGGAATCAAAGAGAAATTCT--G-----CGACTCCC-AGACGGGAGTCAAA--ATCTCCCGCAATTACTT-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTTATTACA-----CACGAAAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ACATA----------------TCTCGTAATCTTATCGGTTTTCATATAGTTTACCGCCAAAACAACGATA
gi|10 : tgtCATAATGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--A-----AGTCTACT-GGACGGGAGTAAAT--ATCTCCCGCAATTACAA-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-C-----AATTCGTTGTAAAAACAAAC-T-A-ATT-G----ACA--ATGCGAA----TGTCAATC-----------------C---TGACCAAGATACATAAGCTCCACCTTAATCGGGTGTAAGCCAATC-TGAT-TGCAGATGATATCAGAAACTTA---C-A----ACATGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGAACGACT---AACTGGC-------------------ATATT----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCAATGAAACAATGATA
gi|11 : ttGAACTCTCCCGCATTGTGT----GGGAGTCTCCCGGAATTGAAGAGAAAACCC--G-----CGACTCCC-AGACCGGAGTCAAA--ATCTCCCTCAATCACAA-TAT---A-C------------TGGGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----AAA--CTGCGAA----TATCAATGAT----TG--TCCTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ATGTGATTACA-----CATGAGAGGTGTTAC----------------------TT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTGTCGGTTTTCACATAGTTTACCGCCAAAATAATGA
gi|12 : gtGAACTCTCCCGTATTGTGA----GGGAGTCTCCTGGAATCAAAGAGAAAACCT--G-----CGACTCCT-GGACA-------------------CAATCACAG-TAT---C-C------------AGTGTAT---TAAAT-------TTTCGCT----CCAG-TG-C-----AGTTCGTTGTAAAAACAAAC-T-A-GTT-G----ACA--CTGCGAA----TGTCAAACAT----TG--TCCTAAACA--TGACCAAGATACATGAGC-----CTTTATCGGTTGTAAGTCAAAC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATTAAATTCGACACAGCAAGACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCATATAGTTTACTGCTGAAACAACAAg
gi|13 : gtGAACTCCCCTGCATTGTGC----GGGAGTCTCCCGGAATTAAAGAGAAAATCT--G-----CGACTTCC-AGATGGGAGTCAAA--ATCTCCTGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAC-TA-C-----AGTTTGTTGTA---------------TT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAG---------CTCCACCTTTATCTGTTGTAAGCCAATC-AGAT-TCCAGATGATATCAGAAACCTT---C-A----ACATAATTACA-----CACGAGAGGTGTTACAATCAAATT-GACACAGAACGACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCATATAGTTAACTGCCGAAACA
gi|14 : gtTCTCCCGCAGTGTGC----GGGAGTCTCC-GGGATCAAAGAGAAAACCT--G-----TGACTCCC-AGACGGGAGTCAGA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGCAT---TATAA-------TTTCACTTAACCCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCAAA----TGTCAATCAT----TG--ACCTAAAAA--TGACCAAGATACATAAGCTCTGCCATTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----AC----TTTCA-----CACGAGAAGTGTTACAATCAA--------------GACT---TTTTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCTTGTAGTTTACCGCCGAAACAAggg
gi|15 : GAATTCTCACGCATTGTGC----GGGAGTCTTCCAGAATCAAAGAGAAAACCC--G-----CGACTCCC-AAACGGGAGTCCAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCGCT----CCAG-TG-C-----AGTTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCACCTTTCTCGGTTGTATG----TC-AGAT-TGCAGATAATATAAG-AACTTT---C-A----AAATGATTACA-----CACGAGAAGTGTTACAATCAAATTTGAAACAGCACAACC---AATTGGC-------------------ATA
gi|16 : tGAAATCTCCCACATTGTGT----GGGAGTCTCCCTGTATCAAACAGAACACCT--GCGACTCGACTCCC-TGACAGGAGTCAGA--ATCTCCCGCAATCACAG-TATATGC-CCATCCCTGATTATGTGTAT---TATAT-------TTTTACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--TTGCAGA----TGaa
gi|16 : catgtAAACTAATTGACAT-TGCAGATGATATCGGAAACTTT---C-A----AAGTGATTACA-----CACAAG--GTGTTAAAATCAAATTCGACACAGCATGACT---AATTGAC-------------------ATATA----------------TCTCGTAGTCATATTGGTTTTCATATAGTTTACCACCGAAACAACGATAatatcggaaactttcaaagtgattacacacaaggtgttaaaatcaaattcgacacagcatgactaattgacatatatctcgtagtcatattggttttcatatagtttaccaccgaaacaacgata
gi|17 : catgtgaaatctcccacattgtgtgggagtctccctgtatcaaacagaacacctgcgactcgactccctgacaggagtcagaatctcccgcaatcacagtatatgcccatccctgattatgtgtattatatttttactccagtgcaatttgttgtaaaaac-GGATGGGAGTCAAA--ATCTCCCACAATC-------------T------------TGTGTAT---T-TATAATAATGTTTCACC----------------------TGTTGTAAAAACAAAC-TTA-ATT-G----ACAAGTTGCAAA----TGTCAATCAT----TA--TTGCAAACA--TGAACTGCATACATAAACTCCACCATTATCAGTTGTAAGCCAATC-AAAT-TGCAGATAATATCAGAAGTGTTGGAC-A----ACATGATTACA-----CACAAGATGTTTTA---------TCAACACAACATA--T---AATTGGC-------------------ATAAA----------------T
gi|18 : tGAACACTCCAGGCTTGTGT----GGAAGTCTTCAAGATTCAGA--------CT--G---------TCCC-AGACATG--TTACATTATCTCATGCAAATGCAAATAT---C----------------TGCAT----ATA------------ACG----CAAG-TT-CTATCGGATTTGTTTTAAAAACAAAT-T-T-ATTTG----ATA--CAGTTAAG---TGTCGGTCAT----GG-------ATCA--TAATTA---TACACAAGCTCCGCCCATATTTGTTTTCAACCAATC-AACT-TACTACTGATTTCAtgctcaaacatatcataaaaaattatagttttaaggttttcacac
gi|19 : cacgtCTCCCGTATTGTGC----GGGAGTCTCTTGGAATCAGAGAGAAAATCA--G-----TGAGTCCC-GGACGGGAATCTAA--ATCTCTCCCAGTCACAA-TAT---C-C------------TATGTGT---TATAT-------TTTCACT----CCAC-TG-C-----AATTTGTTGTAAAAATAAAC-T-A-ATT-G----ATA--CTGCGAA----TGTCAATCAT----TG--TCATAAACA--TGACCCAGACACATAAACTCCACCATTACCGGTTGCAAGCCAATC-AGAT-TGCAGATGATATCAGACAATCT---CAA----ACGTGATTACA-----CAAGAGAGGTGTTAatcgtctcagataaatgccatgctcaatttttatcattccaatcagtcttgtggt
gi|2 : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----TGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATTACTA-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-C-----AATTTATTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGTGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTGT---C-A----GCGTGATTACA-----CACGAGAGGTGTTACTATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCACCGAAACAACGATA
gi|20 : AACTTCCCCAAATTTTGT----GGGGGTCTCTTAGGTTCAAAGTTAAAA----------------------ATAGGTTACACA--ATCTTCCACAATCACAA-AGC---T-C------------TTTGTAT---T-TAT-------G--CATTG---CCTG-TA-C-----A-TTTGTTGTAAAAACAGACTT-T-CTT-G----ACA--GT-CAAACTTTTGTCAGTCA-----CGAATTATAAACAAGTGTC--GGAAACATTAGCTCCTCC--TATCAAATGTCAGCCAATC-AAAC-TGTTGCTGATTTAAGAAA
gi|21 : gtaCCTGCATTGTGC----TGGAGTCTCCTGGATTGAAAGTTAAAACCT--G-----CTTGTCCT-GGACAGGTTACATA--ATCTCCTGCAGTCACAG--AT---CTT------------TATGTATCAGTGCAT-------T-----T----CCTG-TGTT-----AATTTGTTATAAAAGCA----T-A-TCT-GTCACACA--CAGTAAAG---TGTCAGTCACAAAATG-----TAAAGA--TGAACCAGAAAAACTAGTTCCTCCAATATCAGTTATAAGCCATTC-a
gi|22 : aAACTCTCTCGCATTGTGT----GGGAGTCTCTCAGAAACAAAGTCTCAACCC--A-----TAAGTCAC-AGACGGGAGTCAAA--AT-TTCCAAAATCACAA-AAT---C-C------------TGT-TA-----AGGT-------TT----T----CCA---------------TGTTGTAAAAAAAAACTT-A-ATT-G----ACA--CTGCTAG----TGTCAATCAT----GA--TTCTAAACA--TGAACTATACATATAAACT-AGTCATTATGGGTAGTAAGCCAATC-AGAT-TGCAGAT
gi|23 : GAACTCTCCTTCATTGTGT----GCGAGTCTCACGGAATCAAACAGAAAACCT--G-----CAAGTCCT-GGACAGGAGTCAAA--TCCTTCCACAATCACA----------------------------------ATAT-------CTT-----------G-TG-T-----ATTATATT-------CCAAC-T----CT------ACA--CAACAAA----TGTCAATCAT----GG--TCGTAAACA--TGACCCAGATATATAAGCTCCACCCTT
gi|24 : gt-A-ATT-G----ACA--CTGCGAA----TGTCAGTCTT----TG--TCCTAAACA--TGACCAAAATACATAAGCT--------------------CCAATC-AGATATGCAGATAATATCAG-AACTTT---C-A----ACGTGTTCACA-----TGCGAGAGGTGTT
gi|25 : CCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAAATGATATCAGA---TTA---C-ACAAGAGAGGATTACA-----CACAAGAGGTGTTACAATCAAATTTGACACAGCATGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTTTTATCAGTTTTCATCTAGTTTACCGCCGAAACAACGATttttttgtggacaaaatcacactcacatggttggatttttacaaacaaaataaaa
gi|26 : GGAGTCTCCCAGAATCAAAGAGAAAACCCGAG-----CGA--CCC-AAATGGGATTCAAA--ATCTCCTGCAGTCACGG-TAT---T-G------------TGTGCAT---TATAT-------T-------------------------------------AACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAGACAT----TG--TCGTAAACA--TAGCCCAGATACAAAAGCTCC
gi|27 : TTTATTGGTTGTAAGCCAATC-AGAT-TGCAGACGATATCAGAAACTTT---C-A----TCGTGATTACA-----CACGAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCTTGTAGTTTAGTGCCGAAACAACGATA
gi|28 : GAACCCTTCCGCATTGTTG----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACAACC-AGAAGGGAGTCAAA--ATCTCCCGCAATCACAC-TTT---C-C------------TCTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGCTATAAAAACAAAC-T-
gi|29 : tgtGAACTCTCCCACATTGTGCTGGTGGGAGTCTCCTGGAATCCAAGATAAAATC-----------A------GGACAGAAGTC-AA--ATCTTTCGCAGTCACAA-AAT---C-C------------TGTGTAT---T-TCT-------TTTC-TT----C-----------------TGTTGTAAAATCAAAC-T-GTATT-G----ACA--CTGTAAA----TGg
gi|3 : gtGAACTCTCCCGCATTGTGC----GAGAGTCTCCAGGAATCAAAGAGAAAACCT--G-----CAACTTCC-GGACGGGAGTCAAA--ATCTCCCACAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CAAA-TG-C-----AATTTGTTGTAAAAA-AAAC-T-A-ATT-G----ACC--CTGCGAA----TGTCAATTA-----TG--TCCTTAACA--TG-------T-----AGCTCGGCCTTTATTAGTAGTAAGCCAATC-AGAT-TGCAGATAATAT-----------------------TGATTACACATGTCATGATAGGTGTTAAAATAAAATTCCACACAGCACGACT---GATTGGC-------------------ATACATTGCTTTGTCGCAAATTCTCATAGTCTTATCGGTTTTCAT-TAGTTTACCGCCGAAAAAACGATA
gi|30 : gtAACTTTTCCGCATTGTTC----AGGAGTCTTCCGGAATCAAAGAGAAAACCT--G-----TGACTCTC-GGACGGGAGTCAAA--ATCTCCTGCAATTACTA-TAT---C-C------------TGTGTAC---TGTAT-------TTTTACTA---CCCC-TG-C-----AATTT
gi|31 : GAACTCTTCTGCATTGTGC----G----------GGAGTC-------------------------TCCC-GGA-----ATCGAAG-ATCTTCTTCAATCAGAA-TAT---C-C------------TGTATAT---TCTAT-------TTTCACT----CCAA-TG-C-----AATTTGCTGTAAAA
gi|34 : tGAACTCTCCCGCATTGTGC----GAGTGTCTCCCTGAATCAAAGAGAAAATC
gi|4 : tgtGAACCTTCCTGCATTGTGC----AGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----CGACTTCC-AGATGGGAGTCAAA--ATCTCCCGCAATCAGAA-TAT---C-C------------TGTGTAG---TATAT-------TTTCGCT----CCAC-TG-C-----AATTTGTTGTAA----AAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATTAT----TT--TCCTAAACA--TGACCAAGATACATAAGCTCTGCCTTTATCGGTTGAAAGCCATTC-AGAT-TGCAGATGA---CAGAAACGTT---C-A----ATGTGATTTCA-----CATGAGAGGTGTTACAATAAAATTCGAAGCAGCACGACT---TACTGGC-------------------ATATA----------------TCTCGTAGTCTTATCAGTTTTCATATAGTTTATCGCCGAAACAATGGT
gi|5 : tGAACTCTCCCGCATTGTGC----GGGAGTCTCACGGAATCAAAGAGAAAACCT--G-----TGACTCCT-GGACGAGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-T-ACT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAGATACATAAGTTCCGCCTTTATTGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CATGAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCTTGTAGTTTACCCCAAAAACAACGATA
gi|6 : tgtGAACTCTTCTGCATTGTGT----GGGAGTCTCCCGGAATCAAAGAGAAAACTC--G-----CAACTCCT-AGATGGGAGTCAAA--ATTTTC-GCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGT-GTAAAAACAAAC-T-A-ATT-G----ACA--TTGCGAA----TGTCAATCAT----TG--TCTTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCTGTTGTAAGCCAATC-AGAC-TGCAGAAGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACAAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTCATAGTCTTATCGATTTTCATGTAGTTTACCTCCAAAACAATGATA
gi|7 : tgtCTTCCGCATTTCGG----GGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----CGACTTCC-AGACAGGAGTCAAA--ATCTCCCGCAATCATAA-TAT---C-C------------TGTGTAT---TATAT------------------------G-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCAAA----TGTCAATTAT----TG--TCCTAAACA--TGAACAAGATACATAAGCTCCGCCTTTATTGGTTGTAAGTTTATC-AGAT-TGCAATTAATATCAGAAACTTT---C-A----ACGTGATTACA-----C----------------TCAAATTCGACAGCGCACAACC---AAATGGCATCAATTGCTTTAACGCAAATATA----------------TCTCATAGTCTAATCGGTTTTCATTTG--TTACCATCAAAACGA
gi|8 : tgtgaaACTCTCCCGCATTGTGC----GGTAGTCTCCCGGAATCAAAGAGAAAACCC--G-----GGACTCCC-GTATGGGAGTCAAA--ATCTCCCACAATCAGAA-TAT---C-C------------TGTGCAT---T------------TTCACT----CCAC-TG-C-----AGTTTGTTGTAAAA-CAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TTCTAAACA--TTACCAAGATACATAAGCTCCGCCTTTATTGGTTGTAAGCCAATC-AGAT-TGCAGATGAT---AGAAA-----------------TGATTTCA-----CACGGGAGGTGTTACAATCAAATTAGACACAGCACGACTATAAATTGGC-------------------ATATA----------------TCTCGTAGTTGTATCGGTTTTCATATAGTTTACCACCGAAACAAta
gi|9 : gtgtGAACTCTCCTGCATTGTGC----AGGAGTCTCCCGGAGTCAAAGAGAAAATCC--G-----CGACTCTCAGGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CTAG-TG-C-----AATTTGTTGTAAAAACAAAC-A-A-ATT-G----ACA--CCGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGACAGGTGTTACAATCAA--------------GACT---AACTGGC-------------------ATATA----------------TCTCGTAG-----TTGGTTTTCATGTAGTTTACCGCTGAAACAAAGATaggt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): TGGAGTTCCCTAGATTGAAAGTGAAAATCCCATTTGTCCCAGAATGTTAGATAGTCTCTCGCAATCACACATCTCT
Unaligned ( gi|33 ): TGTTCCATTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1111111111111111111 1111111111111111
lowQualScore : 3333 555 333333 0 1 33 1 222 1 777777777777 222 1 4444444 5555 888 1 33333 3 1 1 1 3333 22 6666 3333 22 22 0 1 1 333 1 4444 44444 88888 0 0 1 333 6666666666666666666 4444444444444444 1
lowQualScore : .... ... ...... . . .. . ... . ............ ... . ....... .... ... . ..... . . . . .... .. .... .... .. .. . . . ... . .... ..... ..... . . . ... ................... ................ .
lowQualScore : 1111 000 777777 2 4 44 4 555 4 333333333333 555 5 6666666 9999 555 4 66666 1 5 5 5 3333 11 3333 5555 33 33 3 6 7 333 9 0000 88888 44444 5 5 7 777 3333333333333333333 7777777777777777 2
consensus : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCGCCGAAACAACGATA
Reference ( family-5681 ) : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCGCCGAAACAACGATA
gi|1 : GAACTCTCCTGCATTGTGC----GGAAGTCTCCCGGAATCAAAGAGAAATTCT--G-----CGACTCCC-AGACGGGAGTCAAA--ATCTCCCGCAATTACTT-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTTATTACA-----CACGAAAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ACATA----------------TCTCGTAATCTTATCGGTTTTCATATAGTTTACCGCCAAAACAACGATA
gi|10 : tgtCATAATGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--A-----AGTCTACT-GGACGGGAGTAAAT--ATCTCCCGCAATTACAA-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-C-----AATTCGTTGTAAAAACAAAC-T-A-ATT-G----ACA--ATGCGAA----TGTCAATC-----------------C---TGACCAAGATACATAAGCTCCACCTTAATCGGGTGTAAGCCAATC-TGAT-TGCAGATGATATCAGAAACTTA---C-A----ACATGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGAACGACT---AACTGGC-------------------ATATT----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCAATGAAACAATGATA
gi|11 : ttGAACTCTCCCGCATTGTGT----GGGAGTCTCCCGGAATTGAAGAGAAAACCC--G-----CGACTCCC-AGACCGGAGTCAAA--ATCTCCCTCAATCACAA-TAT---A-C------------TGGGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----AAA--CTGCGAA----TATCAATGAT----TG--TCCTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ATGTGATTACA-----CATGAGAGGTGTTAC----------------------TT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTGTCGGTTTTCACATAGTTTACCGCCAAAATAATGA
gi|12 : gtGAACTCTCCCGTATTGTGA----GGGAGTCTCCTGGAATCAAAGAGAAAACCT--G-----CGACTCCT-GGACA-------------------CAATCACAG-TAT---C-C------------AGTGTAT---TAAAT-------TTTCGCT----CCAG-TG-C-----AGTTCGTTGTAAAAACAAAC-T-A-GTT-G----ACA--CTGCGAA----TGTCAAACAT----TG--TCCTAAACA--TGACCAAGATACATGAGC-----CTTTATCGGTTGTAAGTCAAAC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATTAAATTCGACACAGCAAGACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCATATAGTTTACTGCTGAAACAACAAg
gi|13 : gtGAACTCCCCTGCATTGTGC----GGGAGTCTCCCGGAATTAAAGAGAAAATCT--G-----CGACTTCC-AGATGGGAGTCAAA--ATCTCCTGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAC-TA-C-----AGTTTGTTGTA---------------TT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAG---------CTCCACCTTTATCTGTTGTAAGCCAATC-AGAT-TCCAGATGATATCAGAAACCTT---C-A----ACATAATTACA-----CACGAGAGGTGTTACAATCAAATT-GACACAGAACGACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCATATAGTTAACTGCCGAAACA
gi|14 : gtTCTCCCGCAGTGTGC----GGGAGTCTCC-GGGATCAAAGAGAAAACCT--G-----TGACTCCC-AGACGGGAGTCAGA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGCAT---TATAA-------TTTCACTTAACCCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCAAA----TGTCAATCAT----TG--ACCTAAAAA--TGACCAAGATACATAAGCTCTGCCATTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----AC----TTTCA-----CACGAGAAGTGTTACAATCAA--------------GACT---TTTTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCTTGTAGTTTACCGCCGAAACAAggg
gi|15 : GAATTCTCACGCATTGTGC----GGGAGTCTTCCAGAATCAAAGAGAAAACCC--G-----CGACTCCC-AAACGGGAGTCCAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCGCT----CCAG-TG-C-----AGTTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCACCTTTCTCGGTTGTATG----TC-AGAT-TGCAGATAATATAAG-AACTTT---C-A----AAATGATTACA-----CACGAGAAGTGTTACAATCAAATTTGAAACAGCACAACC---AATTGGC-------------------ATA
gi|16 : tGAAATCTCCCACATTGTGT----GGGAGTCTCCCTGTATCAAACAGAACACCT--GCGACTCGACTCCC-TGACAGGAGTCAGA--ATCTCCCGCAATCACAG-TATATGC-CCATCCCTGATTATGTGTAT---TATAT-------TTTTACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--TTGCAGA----TGaa
gi|16 : catgtAAACTAATTGACAT-TGCAGATGATATCGGAAACTTT---C-A----AAGTGATTACA-----CACAAG--GTGTTAAAATCAAATTCGACACAGCATGACT---AATTGAC-------------------ATATA----------------TCTCGTAGTCATATTGGTTTTCATATAGTTTACCACCGAAACAACGATAatatcggaaactttcaaagtgattacacacaaggtgttaaaatcaaattcgacacagcatgactaattgacatatatctcgtagtcatattggttttcatatagtttaccaccgaaacaacgata
gi|17 : catgtgaaatctcccacattgtgtgggagtctccctgtatcaaacagaacacctgcgactcgactccctgacaggagtcagaatctcccgcaatcacagtatatgcccatccctgattatgtgtattatatttttactccagtgcaatttgttgtaaaaac-GGATGGGAGTCAAA--ATCTCCCACAATC-------------T------------TGTGTAT---T-TATAATAATGTTTCACC----------------------TGTTGTAAAAACAAAC-TTA-ATT-G----ACAAGTTGCAAA----TGTCAATCAT----TA--TTGCAAACA--TGAACTGCATACATAAACTCCACCATTATCAGTTGTAAGCCAATC-AAAT-TGCAGATAATATCAGAAGTGTTGGAC-A----ACATGATTACA-----CACAAGATGTTTTA---------TCAACACAACATA--T---AATTGGC-------------------ATAAA----------------T
gi|18 : tGAACACTCCAGGCTTGTGT----GGAAGTCTTCAAGATTCAGA--------CT--G---------TCCC-AGACATG--TTACATTATCTCATGCAAATGCAAATAT---C----------------TGCAT----ATA------------ACG----CAAG-TT-CTATCGGATTTGTTTTAAAAACAAAT-T-T-ATTTG----ATA--CAGTTAAG---TGTCGGTCAT----GG-------ATCA--TAATTA---TACACAAGCTCCGCCCATATTTGTTTTCAACCAATC-AACT-TACTACTGATTTCAtgctcaaacatatcataaaaaattatagttttaaggttttcacac
gi|19 : cacgtCTCCCGTATTGTGC----GGGAGTCTCTTGGAATCAGAGAGAAAATCA--G-----TGAGTCCC-GGACGGGAATCTAA--ATCTCTCCCAGTCACAA-TAT---C-C------------TATGTGT---TATAT-------TTTCACT----CCAC-TG-C-----AATTTGTTGTAAAAATAAAC-T-A-ATT-G----ATA--CTGCGAA----TGTCAATCAT----TG--TCATAAACA--TGACCCAGACACATAAACTCCACCATTACCGGTTGCAAGCCAATC-AGAT-TGCAGATGATATCAGACAATCT---CAA----ACGTGATTACA-----CAAGAGAGGTGTTAatcgtctcagataaatgccatgctcaatttttatcattccaatcagtcttgtggt
gi|2 : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----TGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATTACTA-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-C-----AATTTATTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGTGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTGT---C-A----GCGTGATTACA-----CACGAGAGGTGTTACTATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCACCGAAACAACGATA
gi|20 : AACTTCCCCAAATTTTGT----GGGGGTCTCTTAGGTTCAAAGTTAAAA----------------------ATAGGTTACACA--ATCTTCCACAATCACAA-AGC---T-C------------TTTGTAT---T-TAT-------G--CATTG---CCTG-TA-C-----A-TTTGTTGTAAAAACAGACTT-T-CTT-G----ACA--GT-CAAACTTTTGTCAGTCA-----CGAATTATAAACAAGTGTC--GGAAACATTAGCTCCTCC--TATCAAATGTCAGCCAATC-AAAC-TGTTGCTGATTTAAGAAA
gi|21 : gtaCCTGCATTGTGC----TGGAGTCTCCTGGATTGAAAGTTAAAACCT--G-----CTTGTCCT-GGACAGGTTACATA--ATCTCCTGCAGTCACAG--AT---CTT------------TATGTATCAGTGCAT-------T-----T----CCTG-TGTT-----AATTTGTTATAAAAGCA----T-A-TCT-GTCACACA--CAGTAAAG---TGTCAGTCACAAAATG-----TAAAGA--TGAACCAGAAAAACTAGTTCCTCCAATATCAGTTATAAGCCATTC-a
gi|22 : aAACTCTCTCGCATTGTGT----GGGAGTCTCTCAGAAACAAAGTCTCAACCC--A-----TAAGTCAC-AGACGGGAGTCAAA--AT-TTCCAAAATCACAA-AAT---C-C------------TGT-TA-----AGGT-------TT----T----CCA---------------TGTTGTAAAAAAAAACTT-A-ATT-G----ACA--CTGCTAG----TGTCAATCAT----GA--TTCTAAACA--TGAACTATACATATAAACT-AGTCATTATGGGTAGTAAGCCAATC-AGAT-TGCAGAT
gi|23 : GAACTCTCCTTCATTGTGT----GCGAGTCTCACGGAATCAAACAGAAAACCT--G-----CAAGTCCT-GGACAGGAGTCAAA--TCCTTCCACAATCACA----------------------------------ATAT-------CTT-----------G-TG-T-----ATTATATT-------CCAAC-T----CT------ACA--CAACAAA----TGTCAATCAT----GG--TCGTAAACA--TGACCCAGATATATAAGCTCCACCCTT
gi|24 : gt-A-ATT-G----ACA--CTGCGAA----TGTCAGTCTT----TG--TCCTAAACA--TGACCAAAATACATAAGCT--------------------CCAATC-AGATATGCAGATAATATCAG-AACTTT---C-A----ACGTGTTCACA-----TGCGAGAGGTGTT
gi|25 : CCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAAATGATATCAGA---TTA---C-ACAAGAGAGGATTACA-----CACAAGAGGTGTTACAATCAAATTTGACACAGCATGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTTTTATCAGTTTTCATCTAGTTTACCGCCGAAACAACGATttttttgtggacaaaatcacactcacatggttggatttttacaaacaaaataaaa
gi|26 : GGAGTCTCCCAGAATCAAAGAGAAAACCCGAG-----CGA--CCC-AAATGGGATTCAAA--ATCTCCTGCAGTCACGG-TAT---T-G------------TGTGCAT---TATAT-------T-------------------------------------AACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAGACAT----TG--TCGTAAACA--TAGCCCAGATACAAAAGCTCC
gi|27 : TTTATTGGTTGTAAGCCAATC-AGAT-TGCAGACGATATCAGAAACTTT---C-A----TCGTGATTACA-----CACGAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCTTGTAGTTTAGTGCCGAAACAACGATA
gi|28 : GAACCCTTCCGCATTGTTG----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACAACC-AGAAGGGAGTCAAA--ATCTCCCGCAATCACAC-TTT---C-C------------TCTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGCTATAAAAACAAAC-T-
gi|29 : tgtGAACTCTCCCACATTGTGCTGGTGGGAGTCTCCTGGAATCCAAGATAAAATC-----------A------GGACAGAAGTC-AA--ATCTTTCGCAGTCACAA-AAT---C-C------------TGTGTAT---T-TCT-------TTTC-TT----C-----------------TGTTGTAAAATCAAAC-T-GTATT-G----ACA--CTGTAAA----TGg
gi|3 : gtGAACTCTCCCGCATTGTGC----GAGAGTCTCCAGGAATCAAAGAGAAAACCT--G-----CAACTTCC-GGACGGGAGTCAAA--ATCTCCCACAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CAAA-TG-C-----AATTTGTTGTAAAAA-AAAC-T-A-ATT-G----ACC--CTGCGAA----TGTCAATTA-----TG--TCCTTAACA--TG-------T-----AGCTCGGCCTTTATTAGTAGTAAGCCAATC-AGAT-TGCAGATAATAT-----------------------TGATTACACATGTCATGATAGGTGTTAAAATAAAATTCCACACAGCACGACT---GATTGGC-------------------ATACATTGCTTTGTCGCAAATTCTCATAGTCTTATCGGTTTTCAT-TAGTTTACCGCCGAAAAAACGATA
gi|30 : gtAACTTTTCCGCATTGTTC----AGGAGTCTTCCGGAATCAAAGAGAAAACCT--G-----TGACTCTC-GGACGGGAGTCAAA--ATCTCCTGCAATTACTA-TAT---C-C------------TGTGTAC---TGTAT-------TTTTACTA---CCCC-TG-C-----AATTT
gi|31 : GAACTCTTCTGCATTGTGC----G----------GGAGTC-------------------------TCCC-GGA-----ATCGAAG-ATCTTCTTCAATCAGAA-TAT---C-C------------TGTATAT---TCTAT-------TTTCACT----CCAA-TG-C-----AATTTGCTGTAAAA
gi|34 : tGAACTCTCCCGCATTGTGC----GAGTGTCTCCCTGAATCAAAGAGAAAATC
gi|4 : tgtGAACCTTCCTGCATTGTGC----AGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----CGACTTCC-AGATGGGAGTCAAA--ATCTCCCGCAATCAGAA-TAT---C-C------------TGTGTAG---TATAT-------TTTCGCT----CCAC-TG-C-----AATTTGTTGTAA----AAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATTAT----TT--TCCTAAACA--TGACCAAGATACATAAGCTCTGCCTTTATCGGTTGAAAGCCATTC-AGAT-TGCAGATGA---CAGAAACGTT---C-A----ATGTGATTTCA-----CATGAGAGGTGTTACAATAAAATTCGAAGCAGCACGACT---TACTGGC-------------------ATATA----------------TCTCGTAGTCTTATCAGTTTTCATATAGTTTATCGCCGAAACAATGGT
gi|5 : tGAACTCTCCCGCATTGTGC----GGGAGTCTCACGGAATCAAAGAGAAAACCT--G-----TGACTCCT-GGACGAGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-T-ACT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAGATACATAAGTTCCGCCTTTATTGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CATGAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCTTGTAGTTTACCCCAAAAACAACGATA
gi|6 : tgtGAACTCTTCTGCATTGTGT----GGGAGTCTCCCGGAATCAAAGAGAAAACTC--G-----CAACTCCT-AGATGGGAGTCAAA--ATTTTC-GCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGT-GTAAAAACAAAC-T-A-ATT-G----ACA--TTGCGAA----TGTCAATCAT----TG--TCTTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCTGTTGTAAGCCAATC-AGAC-TGCAGAAGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACAAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTCATAGTCTTATCGATTTTCATGTAGTTTACCTCCAAAACAATGATA
gi|7 : tgtCTTCCGCATTTCGG----GGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----CGACTTCC-AGACAGGAGTCAAA--ATCTCCCGCAATCATAA-TAT---C-C------------TGTGTAT---TATAT------------------------G-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCAAA----TGTCAATTAT----TG--TCCTAAACA--TGAACAAGATACATAAGCTCCGCCTTTATTGGTTGTAAGTTTATC-AGAT-TGCAATTAATATCAGAAACTTT---C-A----ACGTGATTACA-----C----------------TCAAATTCGACAGCGCACAACC---AAATGGCATCAATTGCTTTAACGCAAATATA----------------TCTCATAGTCTAATCGGTTTTCATTTG--TTACCATCAAAACGA
gi|8 : tgtgaaACTCTCCCGCATTGTGC----GGTAGTCTCCCGGAATCAAAGAGAAAACCC--G-----GGACTCCC-GTATGGGAGTCAAA--ATCTCCCACAATCAGAA-TAT---C-C------------TGTGCAT---T------------TTCACT----CCAC-TG-C-----AGTTTGTTGTAAAA-CAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TTCTAAACA--TTACCAAGATACATAAGCTCCGCCTTTATTGGTTGTAAGCCAATC-AGAT-TGCAGATGAT---AGAAA-----------------TGATTTCA-----CACGGGAGGTGTTACAATCAAATTAGACACAGCACGACTATAAATTGGC-------------------ATATA----------------TCTCGTAGTTGTATCGGTTTTCATATAGTTTACCACCGAAACAAta
gi|9 : gtgtGAACTCTCCTGCATTGTGC----AGGAGTCTCCCGGAGTCAAAGAGAAAATCC--G-----CGACTCTCAGGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CTAG-TG-C-----AATTTGTTGTAAAAACAAAC-A-A-ATT-G----ACA--CCGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGACAGGTGTTACAATCAA--------------GACT---AACTGGC-------------------ATATA----------------TCTCGTAG-----TTGGTTTTCATGTAGTTTACCGCTGAAACAAAGATaggt
blockSeqs : TGGT CGA CGACTC A TT A ATG T CATCCCTGATTA CAG G AATAATG TAAC CCC T TATCG T T T T TCAC AG CTTT AAAA AA AG G A GGA A CAAG CATGT ATTCG C ATA ATCAATTGCTTTAACGCAA TTGCTTTGTCGCAAAT A
blockSeqs : . C A . G . . . . . A . G CCC . . T . . . . . G . . . . . . . . . ATTCG A . . . A
blockSeqs : . C C . . . . . . . A . A AG . . . . . . . . G . . . . . . . . . ATTTG C . . . A
blockSeqs : . T C . . . . . . . A . . AG . . . . . . . . . . . . . . . . . . ATTCG C . . . A
blockSeqs : . T C . . . . . . . A . . AC . . . . . . . . . . . . . . . . . . ATTCG T . . . G
blockSeqs : . T T . . . . . . . A . . AG . . . . . . . . . . . . . . . . . . ATTTG T . . . A
blockSeqs : . C C . . . . . . . A . . AG . . . . . . . . . . . . . . . . . . ATTCC C . . . A
blockSeqs : . T T . . . . . . . A . . AG . . . . . . . . . . . . . . . . . . ATTCG T . . . C
blockSeqs : . T T . . . . . . . A . . AG . . . . . . . . . . . . . . . . . . ATTCG C . . . G
blockSeqs : . A C . . . . . . . G . . AC . . . . . . . . . . . . . . . . . . ATTAG C . . . A
blockSeqs : . T T . . . . . . . G . . TG . . . . . . . . . . . . . . . . . . ATTG C . . . G
blockSeqs : . T C . . . . . . . A . . TG . . . . . . . . . . . . . . . . . . TCA C . . . G
blockSeqs : . C C . . . . . . . A . . AG . . . . . . . . . . . . . . . . . . . . . . . T
blockSeqs : . T C . . . . . . . A . . AA . . . . . . . . . . . . . . . . . . . . . . . A
blockSeqs : . C C . . . . . . . A . . CC . . . . . . . . . . . . . . . . . . . . . . . G
blockSeqs : . T T . . . . . . . A . . AA . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . T C . . . . . . . G . . AC . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . T T . . . . . . . C . . AG . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . T C . . . . . . . A . . AG . . . . . . . . . . . . . . . . . .
blockSeqs : . C C . . . . . . . A . . AC . . . . . . . . . . . . . . . . . .
blockSeqs : . T G . . . . . . . A . . AG . . . . . . . . . . . . . .
blockSeqs : . C C . . . . . . . A . . A . . . . . . . . . . . . . .
blockSeqs : . C . . . . . . . . A . . G . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : AG*
originalCons : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCGCCGAAACAACGATA
finalCons : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCGCCGAAACAACGATA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): TGGAGTTCCCTAGATTGAAAGTGAAAATCCCATTTGTCCCAGAATGTTAGATAGTCTCTCGCAATCACACATCTCT
Unaligned ( gi|33 ): TGTTCCATTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
Alignments
lowQualScore : 1111111111111111111 1111111111111111
lowQualScore : 3333 555 333333 0 1 33 1 222 1 777777777777 222 1 4444444 5555 888 1 33333 3 1 1 1 3333 22 6666 3333 22 22 0 1 1 333 1 4444 44444 88888 0 0 1 333 6666666666666666666 4444444444444444 1
lowQualScore : .... ... ...... . . .. . ... . ............ ... . ....... .... ... . ..... . . . . .... .. .... .... .. .. . . . ... . .... ..... ..... . . . ... ................... ................ .
lowQualScore : 1111 000 777777 2 4 44 4 555 4 333333333333 555 5 6666666 9999 555 4 66666 1 5 5 5 3333 11 3333 5555 33 33 3 6 7 333 9 0000 88888 44444 5 5 7 777 3333333333333333333 7777777777777777 2
consensus : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCGCCGAAACAACGATA
Reference ( family-5681 ) : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCGCCGAAACAACGATA
gi|1 : GAACTCTCCTGCATTGTGC----GGAAGTCTCCCGGAATCAAAGAGAAATTCT--G-----CGACTCCC-AGACGGGAGTCAAA--ATCTCCCGCAATTACTT-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTTATTACA-----CACGAAAGGTGTTACAATCAAATTCGACACAGCACGACT---AATTGGC-------------------ACATA----------------TCTCGTAATCTTATCGGTTTTCATATAGTTTACCGCCAAAACAACGATA
gi|10 : tgtCATAATGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--A-----AGTCTACT-GGACGGGAGTAAAT--ATCTCCCGCAATTACAA-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-C-----AATTCGTTGTAAAAACAAAC-T-A-ATT-G----ACA--ATGCGAA----TGTCAATC-----------------C---TGACCAAGATACATAAGCTCCACCTTAATCGGGTGTAAGCCAATC-TGAT-TGCAGATGATATCAGAAACTTA---C-A----ACATGATTACA-----CACGAGAGGTGTTACAATCAAATTCGACACAGAACGACT---AACTGGC-------------------ATATT----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCAATGAAACAATGATA
gi|11 : ttGAACTCTCCCGCATTGTGT----GGGAGTCTCCCGGAATTGAAGAGAAAACCC--G-----CGACTCCC-AGACCGGAGTCAAA--ATCTCCCTCAATCACAA-TAT---A-C------------TGGGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----AAA--CTGCGAA----TATCAATGAT----TG--TCCTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ATGTGATTACA-----CATGAGAGGTGTTAC----------------------TT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTGTCGGTTTTCACATAGTTTACCGCCAAAATAATGA
gi|12 : gtGAACTCTCCCGTATTGTGA----GGGAGTCTCCTGGAATCAAAGAGAAAACCT--G-----CGACTCCT-GGACA-------------------CAATCACAG-TAT---C-C------------AGTGTAT---TAAAT-------TTTCGCT----CCAG-TG-C-----AGTTCGTTGTAAAAACAAAC-T-A-GTT-G----ACA--CTGCGAA----TGTCAAACAT----TG--TCCTAAACA--TGACCAAGATACATGAGC-----CTTTATCGGTTGTAAGTCAAAC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGAGAGGTGTTACAATTAAATTCGACACAGCAAGACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCATATAGTTTACTGCTGAAACAACAAg
gi|13 : gtGAACTCCCCTGCATTGTGC----GGGAGTCTCCCGGAATTAAAGAGAAAATCT--G-----CGACTTCC-AGATGGGAGTCAAA--ATCTCCTGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAC-TA-C-----AGTTTGTTGTA---------------TT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAG---------CTCCACCTTTATCTGTTGTAAGCCAATC-AGAT-TCCAGATGATATCAGAAACCTT---C-A----ACATAATTACA-----CACGAGAGGTGTTACAATCAAATT-GACACAGAACGACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCATATAGTTAACTGCCGAAACA
gi|14 : gtTCTCCCGCAGTGTGC----GGGAGTCTCC-GGGATCAAAGAGAAAACCT--G-----TGACTCCC-AGACGGGAGTCAGA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGCAT---TATAA-------TTTCACTTAACCCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCAAA----TGTCAATCAT----TG--ACCTAAAAA--TGACCAAGATACATAAGCTCTGCCATTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----AC----TTTCA-----CACGAGAAGTGTTACAATCAA--------------GACT---TTTTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCTTGTAGTTTACCGCCGAAACAAggg
gi|15 : GAATTCTCACGCATTGTGC----GGGAGTCTTCCAGAATCAAAGAGAAAACCC--G-----CGACTCCC-AAACGGGAGTCCAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCGCT----CCAG-TG-C-----AGTTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCACCTTTCTCGGTTGTATG----TC-AGAT-TGCAGATAATATAAG-AACTTT---C-A----AAATGATTACA-----CACGAGAAGTGTTACAATCAAATTTGAAACAGCACAACC---AATTGGC-------------------ATA
gi|16 : tGAAATCTCCCACATTGTGT----GGGAGTCTCCCTGTATCAAACAGAACACCT--GCGACTCGACTCCC-TGACAGGAGTCAGA--ATCTCCCGCAATCACAG-TATATGC-CCATCCCTGATTATGTGTAT---TATAT-------TTTTACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--TTGCAGA----TGaa
gi|16 : catgtAAACTAATTGACAT-TGCAGATGATATCGGAAACTTT---C-A----AAGTGATTACA-----CACAAG--GTGTTAAAATCAAATTCGACACAGCATGACT---AATTGAC-------------------ATATA----------------TCTCGTAGTCATATTGGTTTTCATATAGTTTACCACCGAAACAACGATAatatcggaaactttcaaagtgattacacacaaggtgttaaaatcaaattcgacacagcatgactaattgacatatatctcgtagtcatattggttttcatatagtttaccaccgaaacaacgata
gi|17 : catgtgaaatctcccacattgtgtgggagtctccctgtatcaaacagaacacctgcgactcgactccctgacaggagtcagaatctcccgcaatcacagtatatgcccatccctgattatgtgtattatatttttactccagtgcaatttgttgtaaaaac-GGATGGGAGTCAAA--ATCTCCCACAATC-------------T------------TGTGTAT---T-TATAATAATGTTTCACC----------------------TGTTGTAAAAACAAAC-TTA-ATT-G----ACAAGTTGCAAA----TGTCAATCAT----TA--TTGCAAACA--TGAACTGCATACATAAACTCCACCATTATCAGTTGTAAGCCAATC-AAAT-TGCAGATAATATCAGAAGTGTTGGAC-A----ACATGATTACA-----CACAAGATGTTTTA---------TCAACACAACATA--T---AATTGGC-------------------ATAAA----------------T
gi|18 : tGAACACTCCAGGCTTGTGT----GGAAGTCTTCAAGATTCAGA--------CT--G---------TCCC-AGACATG--TTACATTATCTCATGCAAATGCAAATAT---C----------------TGCAT----ATA------------ACG----CAAG-TT-CTATCGGATTTGTTTTAAAAACAAAT-T-T-ATTTG----ATA--CAGTTAAG---TGTCGGTCAT----GG-------ATCA--TAATTA---TACACAAGCTCCGCCCATATTTGTTTTCAACCAATC-AACT-TACTACTGATTTCAtgctcaaacatatcataaaaaattatagttttaaggttttcacac
gi|19 : cacgtCTCCCGTATTGTGC----GGGAGTCTCTTGGAATCAGAGAGAAAATCA--G-----TGAGTCCC-GGACGGGAATCTAA--ATCTCTCCCAGTCACAA-TAT---C-C------------TATGTGT---TATAT-------TTTCACT----CCAC-TG-C-----AATTTGTTGTAAAAATAAAC-T-A-ATT-G----ATA--CTGCGAA----TGTCAATCAT----TG--TCATAAACA--TGACCCAGACACATAAACTCCACCATTACCGGTTGCAAGCCAATC-AGAT-TGCAGATGATATCAGACAATCT---CAA----ACGTGATTACA-----CAAGAGAGGTGTTAatcgtctcagataaatgccatgctcaatttttatcattccaatcagtcttgtggt
gi|2 : GAACTCTCCCGCATTGTGC----GGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----TGACTCCC-GGACGGGAGTCAAA--ATCTCCCGCAATTACTA-TAT---C-C------------TGTGTAT---TGTAT-------TTTTACT----CCCCCTG-C-----AATTTATTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGTGAA----TGTCAATCAT----TG--TCCTAAACA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTGT---C-A----GCGTGATTACA-----CACGAGAGGTGTTACTATCAAATTCGACACAGCACGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCATATAGTTTACCACCGAAACAACGATA
gi|20 : AACTTCCCCAAATTTTGT----GGGGGTCTCTTAGGTTCAAAGTTAAAA----------------------ATAGGTTACACA--ATCTTCCACAATCACAA-AGC---T-C------------TTTGTAT---T-TAT-------G--CATTG---CCTG-TA-C-----A-TTTGTTGTAAAAACAGACTT-T-CTT-G----ACA--GT-CAAACTTTTGTCAGTCA-----CGAATTATAAACAAGTGTC--GGAAACATTAGCTCCTCC--TATCAAATGTCAGCCAATC-AAAC-TGTTGCTGATTTAAGAAA
gi|21 : gtaCCTGCATTGTGC----TGGAGTCTCCTGGATTGAAAGTTAAAACCT--G-----CTTGTCCT-GGACAGGTTACATA--ATCTCCTGCAGTCACAG--AT---CTT------------TATGTATCAGTGCAT-------T-----T----CCTG-TGTT-----AATTTGTTATAAAAGCA----T-A-TCT-GTCACACA--CAGTAAAG---TGTCAGTCACAAAATG-----TAAAGA--TGAACCAGAAAAACTAGTTCCTCCAATATCAGTTATAAGCCATTC-a
gi|22 : aAACTCTCTCGCATTGTGT----GGGAGTCTCTCAGAAACAAAGTCTCAACCC--A-----TAAGTCAC-AGACGGGAGTCAAA--AT-TTCCAAAATCACAA-AAT---C-C------------TGT-TA-----AGGT-------TT----T----CCA---------------TGTTGTAAAAAAAAACTT-A-ATT-G----ACA--CTGCTAG----TGTCAATCAT----GA--TTCTAAACA--TGAACTATACATATAAACT-AGTCATTATGGGTAGTAAGCCAATC-AGAT-TGCAGAT
gi|23 : GAACTCTCCTTCATTGTGT----GCGAGTCTCACGGAATCAAACAGAAAACCT--G-----CAAGTCCT-GGACAGGAGTCAAA--TCCTTCCACAATCACA----------------------------------ATAT-------CTT-----------G-TG-T-----ATTATATT-------CCAAC-T----CT------ACA--CAACAAA----TGTCAATCAT----GG--TCGTAAACA--TGACCCAGATATATAAGCTCCACCCTT
gi|24 : gt-A-ATT-G----ACA--CTGCGAA----TGTCAGTCTT----TG--TCCTAAACA--TGACCAAAATACATAAGCT--------------------CCAATC-AGATATGCAGATAATATCAG-AACTTT---C-A----ACGTGTTCACA-----TGCGAGAGGTGTT
gi|25 : CCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAAATGATATCAGA---TTA---C-ACAAGAGAGGATTACA-----CACAAGAGGTGTTACAATCAAATTTGACACAGCATGACT---AATTGGC-------------------ATATA----------------TCTCGTAGTTTTATCAGTTTTCATCTAGTTTACCGCCGAAACAACGATttttttgtggacaaaatcacactcacatggttggatttttacaaacaaaataaaa
gi|26 : GGAGTCTCCCAGAATCAAAGAGAAAACCCGAG-----CGA--CCC-AAATGGGATTCAAA--ATCTCCTGCAGTCACGG-TAT---T-G------------TGTGCAT---TATAT-------T-------------------------------------AACAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAGACAT----TG--TCGTAAACA--TAGCCCAGATACAAAAGCTCC
gi|27 : TTTATTGGTTGTAAGCCAATC-AGAT-TGCAGACGATATCAGAAACTTT---C-A----TCGTGATTACA-----CACGAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTTGTAGTCTTATCGGTTTTCTTGTAGTTTAGTGCCGAAACAACGATA
gi|28 : GAACCCTTCCGCATTGTTG----GGGAGTCTCCCGGAATCAAAGAGAAAACCC--G-----CGACAACC-AGAAGGGAGTCAAA--ATCTCCCGCAATCACAC-TTT---C-C------------TCTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGCTATAAAAACAAAC-T-
gi|29 : tgtGAACTCTCCCACATTGTGCTGGTGGGAGTCTCCTGGAATCCAAGATAAAATC-----------A------GGACAGAAGTC-AA--ATCTTTCGCAGTCACAA-AAT---C-C------------TGTGTAT---T-TCT-------TTTC-TT----C-----------------TGTTGTAAAATCAAAC-T-GTATT-G----ACA--CTGTAAA----TGg
gi|3 : gtGAACTCTCCCGCATTGTGC----GAGAGTCTCCAGGAATCAAAGAGAAAACCT--G-----CAACTTCC-GGACGGGAGTCAAA--ATCTCCCACAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CAAA-TG-C-----AATTTGTTGTAAAAA-AAAC-T-A-ATT-G----ACC--CTGCGAA----TGTCAATTA-----TG--TCCTTAACA--TG-------T-----AGCTCGGCCTTTATTAGTAGTAAGCCAATC-AGAT-TGCAGATAATAT-----------------------TGATTACACATGTCATGATAGGTGTTAAAATAAAATTCCACACAGCACGACT---GATTGGC-------------------ATACATTGCTTTGTCGCAAATTCTCATAGTCTTATCGGTTTTCAT-TAGTTTACCGCCGAAAAAACGATA
gi|30 : gtAACTTTTCCGCATTGTTC----AGGAGTCTTCCGGAATCAAAGAGAAAACCT--G-----TGACTCTC-GGACGGGAGTCAAA--ATCTCCTGCAATTACTA-TAT---C-C------------TGTGTAC---TGTAT-------TTTTACTA---CCCC-TG-C-----AATTT
gi|31 : GAACTCTTCTGCATTGTGC----G----------GGAGTC-------------------------TCCC-GGA-----ATCGAAG-ATCTTCTTCAATCAGAA-TAT---C-C------------TGTATAT---TCTAT-------TTTCACT----CCAA-TG-C-----AATTTGCTGTAAAA
gi|34 : tGAACTCTCCCGCATTGTGC----GAGTGTCTCCCTGAATCAAAGAGAAAATC
gi|4 : tgtGAACCTTCCTGCATTGTGC----AGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----CGACTTCC-AGATGGGAGTCAAA--ATCTCCCGCAATCAGAA-TAT---C-C------------TGTGTAG---TATAT-------TTTCGCT----CCAC-TG-C-----AATTTGTTGTAA----AAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATTAT----TT--TCCTAAACA--TGACCAAGATACATAAGCTCTGCCTTTATCGGTTGAAAGCCATTC-AGAT-TGCAGATGA---CAGAAACGTT---C-A----ATGTGATTTCA-----CATGAGAGGTGTTACAATAAAATTCGAAGCAGCACGACT---TACTGGC-------------------ATATA----------------TCTCGTAGTCTTATCAGTTTTCATATAGTTTATCGCCGAAACAATGGT
gi|5 : tGAACTCTCCCGCATTGTGC----GGGAGTCTCACGGAATCAAAGAGAAAACCT--G-----TGACTCCT-GGACGAGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGTTGTAAAAACAAAC-T-T-ACT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAGATACATAAGTTCCGCCTTTATTGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CATGAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTCGTAGTCTTATCGGTTTTCTTGTAGTTTACCCCAAAAACAACGATA
gi|6 : tgtGAACTCTTCTGCATTGTGT----GGGAGTCTCCCGGAATCAAAGAGAAAACTC--G-----CAACTCCT-AGATGGGAGTCAAA--ATTTTC-GCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CCAG-TG-C-----AATTTGT-GTAAAAACAAAC-T-A-ATT-G----ACA--TTGCGAA----TGTCAATCAT----TG--TCTTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCTGTTGTAAGCCAATC-AGAC-TGCAGAAGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACAAGAGGTGTTACAATCAA--------------GACT---AATTGGC-------------------ATATA----------------TCTCATAGTCTTATCGATTTTCATGTAGTTTACCTCCAAAACAATGATA
gi|7 : tgtCTTCCGCATTTCGG----GGGAGTCTCCCGGAATCAAAGAGAAAACCT--G-----CGACTTCC-AGACAGGAGTCAAA--ATCTCCCGCAATCATAA-TAT---C-C------------TGTGTAT---TATAT------------------------G-C-----AATTTGTTGTAAAAACAAAC-T-A-ATT-G----ACA--CTGCAAA----TGTCAATTAT----TG--TCCTAAACA--TGAACAAGATACATAAGCTCCGCCTTTATTGGTTGTAAGTTTATC-AGAT-TGCAATTAATATCAGAAACTTT---C-A----ACGTGATTACA-----C----------------TCAAATTCGACAGCGCACAACC---AAATGGCATCAATTGCTTTAACGCAAATATA----------------TCTCATAGTCTAATCGGTTTTCATTTG--TTACCATCAAAACGA
gi|8 : tgtgaaACTCTCCCGCATTGTGC----GGTAGTCTCCCGGAATCAAAGAGAAAACCC--G-----GGACTCCC-GTATGGGAGTCAAA--ATCTCCCACAATCAGAA-TAT---C-C------------TGTGCAT---T------------TTCACT----CCAC-TG-C-----AGTTTGTTGTAAAA-CAAAC-T-A-ATT-G----ACA--CTGCGAA----TGTCAATCAT----TG--TTCTAAACA--TTACCAAGATACATAAGCTCCGCCTTTATTGGTTGTAAGCCAATC-AGAT-TGCAGATGAT---AGAAA-----------------TGATTTCA-----CACGGGAGGTGTTACAATCAAATTAGACACAGCACGACTATAAATTGGC-------------------ATATA----------------TCTCGTAGTTGTATCGGTTTTCATATAGTTTACCACCGAAACAAta
gi|9 : gtgtGAACTCTCCTGCATTGTGC----AGGAGTCTCCCGGAGTCAAAGAGAAAATCC--G-----CGACTCTCAGGACGGGAGTCAAA--ATCTCCCGCAATCACAA-TAT---C-C------------TGTGTAT---TATAT-------TTTCACT----CTAG-TG-C-----AATTTGTTGTAAAAACAAAC-A-A-ATT-G----ACA--CCGCGAA----TGTCAATCAT----TG--TCCTAAAAA--TGACCAAGATACATAAGCTCCGCCTTTATCGGTTGTAAGCCAATC-AGAT-TGCAGATGATATCAGAAACTTT---C-A----ACGTGATTACA-----CACGACAGGTGTTACAATCAA--------------GACT---AACTGGC-------------------ATATA----------------TCTCGTAG-----TTGGTTTTCATGTAGTTTACCGCTGAAACAAAGATaggt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): TGGAGTTCCCTAGATTGAAAGTGAAAATCCCATTTGTCCCAGAATGTTAGATAGTCTCTCGCAATCACACATCTCT
Unaligned ( gi|33 ): TGTTCCATTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC