lowQualScore : 111111 111111111111111111111 11111111 111 11 1 1 11 555 22 66666666666666
lowQualScore : 1 1 1 000000 99999999 1 555555555555555555555 2 0 7 99999999 000 11 7 3 5 99 77 333 3 6 0 33 44444444444444 1 9
lowQualScore : . . . ...... ........ . ..................... . . . ........ ... .. . . . .. .. ... . . . .. .............. . .
lowQualScore : 4 1 0 333333 00000000 3 333333333333333333333 2 8 6 44444444 000 00 3 3 0 55 00 555 0 0 7 33 00000000000000 0 0
consensus : NTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAA-TTTGGGT----C-TGTCC--------GTCC-GT--CC--GTC------------CGTCCGTCACACTT------TTGGTTTCC---GTGCAATAA-CTTAAG-AATGTCTGANTCANNTCTTTNGAAATTCGAACACAATGTTTATAATGACAAAACACAGGCTAAGTTCGATTTTCGGGGTTGTGACTTTTGTCGT-GGACAGTTGTGCCCCTTTA
Reference ( gi|3 ) : GTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAA-TTTGGGT----T-TGTCC--------GTCC-GT--TT--GCC------------TGTTCGTCGCACTT------TTGGTTTCC---ATGCAATAA-TTTAAG-AATGTATGATTCAAATCTTC--AAATTTTAATACAATGTTTATAATGACAAAGCACAGGCTAAGTTCGATTTTATGGGTTGTGGCAATTGTCGTTCTACAATTATGCCCCTTTAT
gi|29 : TTTTGTCCCCC-----C-TGCTTTGCAAAAG-GCTAGAGACACTAA-TTTGGGT----C-TCTCT--------GT
gi|10 : ctctttaaataaagatctaatGTCCCC-CGCTTTGTGTAAA-GCGGGAGACACTAA-TTTTGGT----C-TGTCT--------GTC------TT--GTC------------TGTCCATTACAC-T------TTGGTTTCC---ATGCAgca
gi|10 : tatgtactgtcatgtgaagctagaaatgtaatagtttaatcatagcttgttgtttattGTCTCC-CGCTTTACACAAA-GCGGGGGACAATAA-
gi|21 : tatgtactgtcatgtgaagctagaaatgtaatagtttaatcatagcttgttgtGTCCCC-CGCTTTGCGAAAA-GCCGGAGATACTAA-TTTGGGT----C-TGTCC--------GTCT-GT--actaattttggtctgtctgtcttgtctgtccattacactttggtttccatgca
gi|20 : gcatttgtttggggatcgtccatttgttctactgaaaccatcattattGTCCCC-CGTTTTGCGAAAA-GTGGGAGACACTAA-TTTCGAT----C-TGTCT--------GTCT-GT--CT--GTC------------TGTc
gi|14 : aattgggtagggggtggggtgcatgctcccacatacatttttGTCCCC-TGCTTTGCGAAAA-GCTGGAGACACTAA-TTTGGGT----C-GGTCT--------GTCG-AT--------C------------TGTTCATCACAc
gi|5 : tctgtacactgtagaaggtcattgaataatattattatacaactttacaatgtttttaatGTCTAC-GGCTTCGCGAAAA-GCGAGATACACTAA-TTTGGGT----C-TGTACGTATGTATGTCC-GT--CT--GTC------------TGTCCGTCAAAC-T------TTGGTGTACGTTATG-AATAACTCTAAGTAAGGTCTG
gi|7 : gtatctgtggtggagcgtcaacatattgttatcaagattcttctttttGTCTTC-TGCTTTGCGAAAA-GCAGGAGACACTAA-TTTAGGT----C-CGTCCATCT----GTCC-GT--CC--GTC------------TGTCCATCtgatagcagaatgttt
gi|17 : tgatcaaatcccattggccgtcatgtttgataactgttctgtttacaccgccttgcatacagttgggtctgtgaaaggaatttttGTCCCC-TGCTTTGCGGAAA-GCGGCAGACACTAA-TT----T----T-TGTCC--------GTCC-GT--CC--GTC------------CGTCCtgtctgtctg
gi|6 : aacatttttatgttgagagtttattttagttctttgcgaaaacgacggtcggtttttGTCCCC-CTCTTTGCTAAAA-GCGGGGGACACTAA-TTTTGTT----C-CGTCC--------GTCCAGT--CA--GTC------------TGTCCGTC
gi|6 : gacacattaagtgtttggtcaaatcagtggctattaatgtccaatgtcgataagtgtagaacgctacatttgggtcataacaaccaggaaatagtttataattGTCCCC-CGCTTTTAGCAAA-GAGGGGGACAcgtccatct
gi|18 : gacacattaagtgtttggtcaaatcagtggctattaatgtccaatgtcgataagtgtagaacgctacatttgggtcataacaaccaggaaatagtttataatGTCCTC-CGCTTTGCGAAAA-GCGGGAAATAGTTA-TTTTGGT----A-TGTCC--------GTGT-GC--CT--GTC------------TGTTCATCactaattttgttccgtccgtccagtcagtctgtccgtccgtccatct
gi|27 : gaatgaaatgtgttaatacatttttGTCCCC-CGCTTTGCGAAAA-GCGAGAGACCCTAA-TTTGGGTAGACA-TGTCT--------GTCA-GT--tgtctttctgtctgtcggtccgt
gi|27 : ttaagtgctttctgtttttGTCTCT-CGCTTTTCGCAAA-GCGGGGGACAccatc
gi|23 : ttaagtgctttctgttttGTCCCC-CGATTTGCGAAAA---------CACTAA-TCTG---------TGTCC--------GTCC-GT--CA--ATC------------CGTCCATCACAC-T------TTGGTTTCC---GTGCcctaatttgggtagacatgtctgtcagtccatc
gi|12 : cattacatttttGTCCCT-GGCGTTGCGAAAA-GTGGGAGACAC-AA-TTT---T----T-TGTAT--------GTCC-GT--CT--GTC------------TGTCC-TCGCctgaaccaaatctttt
gi|15 : tggatttgtgcataatgaggaggttaaaatctgtcttcaaaatctgtttattttttGTCCCC-CGTTTTACGAAAA-GTAGGATACACTTA-TTTGAGT----A-TGTCC--------GTCtgtctgtctgtcac
gi|26 : ttcagtatatcgaaaatatattatcgtgtcattGTCCAC-CAATATGCGAAAA-GTGG-AGACAATAA-TTTGGGT----C-TGTCC--------GCCT-GT--CT--Gtttccgtatataagtcagtctgccagtccgtccgtcaca
gi|24 : ttaaatctgttgatggatgatgatgataattGTCCCC-CGCTTTGCAAAAA-GCAGGAGGCACTAA-T
gi|24 : aaataatggctttgccataacaatagataatgcagattggtgctaagtagttttaatgctttaatGCCTCC-TGCTTTTTGCAAA-GCGGGGGACATTAA-
gi|19 : aaataatggctttgccataacaatagataatgcagattggtgctaagtagttttaatgctGCCCTC-TGCTTTGCGAAAAAGCAGGAGATACCAA-TTTGGGTG---T-CATCT--------GTCT-Gactaat
gi|2 : atatcttttgcaaagttatttacattttcacctattattcatccatatttttTCTCCACGCTTTGCAAAAA-GCAGGAGACATTAA-TTTGGGT----C-CGTCTATCT----GTCC-AT--AC--GTC------------TGTTTGTC---CTTCAAAATTTGGTTTCC---ATGCAATAA-CCTAAG-AATTCCTGAT-CACTTCTTTTGAAATTCTAATATAATGTTTATAATGACAAAACACAGGCCAAGTTCAATTTTCAAGGTTGTGACTTTTGGCATTGGTCAGTTGTGCTTCTTTA
gi|21 : tcaaatgttaatttatgtaatgtttttTCTCC-GGCTTTTCGCAAA-GCGGGGGACAATAA-T
gi|30 : gcatttgtttggggatcgtccatttgttctactgaaaccatcTTCCT-CACTTTGCGAAAA-GCGGGAG--ACTAA-TTTGGGT----C-CGTCT--------GTCtactaatttgggtctgtccgtctgtc
gi|1 : ttataataaagcatgtacaaactttttttaCCCC-CGCATTGCAAAAA-TCGGGAGACACTAA-TTTGGGT----C-TGTCC--------GTCC-GTCCTTCCGTC------------CGTCCGTCACACa
gi|13 : gctattgttaattgtaaaatgatttcaattgcaaactgcagagggcctttgttaagaaataaaaggaagcaaacaatgtttccgaaaatacatcacagttcatcttttaagtatctaaaggttgaatgacgatacacaattctttttacataaaaataagaatttatctatcaatatatcagcagtcattttaagttgcaatttcattactgtcCCCC-CGCTTTGCGATCA-ACGGGACACACTTA-TTTGGGT----C-CGTCC--------GTCC-GT--------C------------CGTCCATCAC
gi|25 : cataacaatggatcaagaattgttttaattttaattaaagtatttgacggtcaattttcgtcattttcCCCC-CGCTTTCAGAAAT-ATGGGAGACGCTAACTTTG----------GTCC--------CTCC-AT--AT--GTC------------CGTCCATC
gi|22 : aatttaagctattaatattatacatgtttttaCC-CAATTTGCGAAAA-GTGGGAGACACTAA-TTTGGGT----C-TGTCT--------GCCC-GC--TC--ACC------------TGcatccaa
gi|35 : taaataaacaatttgaaaaatggttccttttgaaaaaaaatttaGTTTTGCGAAAA-GCGGGCGACACTAA-TTTGGAT----C-CGTGT--------GTCT-GT--CT--GTC------------CGTTCGTc
gi|32 : GCTTTGAGAAAA-GCCAAAGACACTAA-TTTGGGT----C-TGTC
gi|28 : aaatcaatgtattacaatgtacttcgaaatTTTGCGAAAA-G----AGACACTAA-TTTGGGT----C-TGTCC--------ATCC-------------------------ATCCATCACA-TT------TTGGTTTCC---AGGCAATAA-CTT
gi|33 : tgttcctatgTTTGTGAAAA-GCGGGAGACACTAA-TTTGGGT----C-TGTCC--------ATCC-AT--CT--G
gi|31 : tcctgctttgcaaaTTTCCCGAAA-GCGCGAGACACTAA-TTTGGGT----C-TGTCT--------GTCC-GT--
gi|37 : caaatttgggaatttccataaatgttttTGTGGAAA-GCGG-AGACACTAA-TTTGGGT----C-TGTCT--------GTCT-GT--acgt
gi|4 : AAA-GTGGGAGACACTAA-TTTTGGT----C-TGTAC--------GTCC-GT--AT--GTCCGTATGTCCGTCTGTCCATCACACTT------TTGGTTGCT---GTGCAATAA-CTT--G-AATGTCTGAATCAAATCTTTG-AAATTTGAACACAATGTTTATTATGATAAAACACAGGCTAAGTTTGATTTTCAGGGTTGTG---ATTCT-----TAGTATTCTGCCCCTTTAcag
gi|11 : cccctatgttcacAAA-GTGGGAGACATTAA-TTTGGGT----C-TGTCA--------GTCG-GT--CG--GTC------------TGTCTGTCACACTT------TTGGTTTCC---GTGCAATAA-CTT
gi|16 : aaattaccagttaaaacatgttttttgtttttaataaagttatttcaatgtttcacAAA-GTGGGAGACACTAA-TTTGGGT----C-TGTCC--------GTCC-GT--CC--GTC------------CGTT
gi|34 : caaatacacatacagaccatttcaatagaatagttttaattggtgattataaaagaaatgttttgtccccGGGAAACACTAA-TTTGGGT----C-TGTCC--------ATCT-GT--
gi|9 : gtaaatcttctttatgtcccccatgGGGAGACATTGT-TTTATGT----TCTGTCT--------GTCC-AT--CT--GTC------------TGCCAGTCc
gi|38 : ttataatataccaaaagttagttctctataattattattcaGAAGACACTAA-TTTGGGT----C-TGTCC--------ATCC-aatccatccatctgtctgttaaaaactttgtccatacaaatcctcctaaaatgttcataaaatggg
gi|36 : acaaatttggtaatAGACACTTA-TTTGGGT----C-TGTCC--------TTCC-GT--TC--ATC------------CGTCCGTC
gi|8 : ataaaataaCGCTAA-TTTGGGT----C-TGTCC--------GTCcgtctg
gi|8 : gttcatatgtcagttgtattgttttgttccccagGTTTATAATGGCAAAACACAGGCTAAGTTTGAATTAAGGGGTGGTGACTTTTGTTGTAAGACAGTTGTGCCCCTTTAtaataccgtgcaataactttagtttataatggcaaaacacaggctaagtttgaattaaggggtggtgacttttgttgtaagacagttgtgcccctttaatttttga
Alignments
lowQualScore : 1 1 2 444444444
lowQualScore : 1 1 111 55555555 44444444 333333 2222 666666666666 9 888 6 3 0 4 22 7 77 0 66 1 333333333 0
lowQualScore : . . ... ........ ........ ...... .... ............ . ... . . . . .. . .. . .. . ......... .
lowQualScore : 7 2 999 11111111 11111111 333333 7777 888888888888 4 888 7 2 0 0 00 0 33 7 88 2 222222222 2
consensus : NTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTGGGT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTCCGTCACACTTTTGGTTTCCG---TGCAATAACT-TAAG-AATGTCTGA-TCAAATCTTC-GAAATTTTAATACAATGTTTATAATGACAAAACACAGGCTAAGTTCGATTTTCGGGGTTGTGACTTTTGTCGTT-NGACAGTTGTGCCCCTTTA
Reference ( family-563 ) : NTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTGGGT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTCCGTCACACTTTTGGTTTCCG---TGCAATAACT-TAAG-AATGTCTGANTCANNTCTTTNGAAATTCGAACACAATGTTTATAATGACAAAACACAGGCTAAGTTCGATTTTCGGGGTTGTGACTTTTGTCG-T-GGACAGTTGTGCCCCTTTA
gi|1 : CCCC-CGCATTGCAAAAA-TCGGGAGACACTAATTTGGGT---C--------TGTCC--------GTCC-----GTCCTT------------CCGTCCGTCCGTCACAC
gi|10 : gctattgttaattgtaaaatgatttcaattgcaaactgcagagggcctttgttaagaaataaaaggaagcaaacaatgtttccgaaaatacatcacagttcatcttttaagtatctaaaggttgaatgacgatacacaattctttttacataaaaataagaatttatctatcaatatatcagcagtcattttaagttgcaatttcattactgtcGTCCCC-CGCTTTGTGTAAA-GCGGGAGACACTAATTTTGGT---C--------TGTCT--------GTC------------------------TTGTCTGTCCATTACAC-TTTGGTTTCCA---TGCA
gi|11 : tatgtactgtcatgtgaagctagaaatgtaatagtttaatcatagcttgttgtttattAAA-GTGGGAGACATTAATTTGGGT---C--------TGTCA--------GTCG-----G----T------------CGGTCTGTCTGTCACACTTTTGGTTTCCG---TGCAATAACT-T
gi|12 : aaattaccagttaaaacatgttttttgtttttaataaagttatttcaatgtttcacGTCCCT-GGCGTTGCGAAAA-GTGGGAGACAC-AATTT---T---T--------TGTAT--------GTCC-----G----T------------CTGTCTGTCC
gi|13 : tggatttgtgcataatgaggaggttaaaatctgtcttcaaaatctgtttattttttCCCC-CGCTTTGCGATCA-ACGGGACACACTTATTTGGGT---C--------CGTCC--------GTCC-----G----T------------CCGTCCATCtcgctgtctgtctgtcac
gi|14 : cataacaatggatcaagaattgttttaattttaattaaagtatttgacggtcaattttcgtcattttcGTCCCC-TGCTTTGCGAAAA-GCTGGAGACACTAATTTGGGT---C--------GGTCT--------GTCG-----A----T------------CTGTTCATCac
gi|15 : tctgtacactgtagaaggtcattgaataatattattatacaactttacaatgtttttaatGTCCCC-CGTTTTACGAAAA-GTAGGATACACTTATTTGAGT---A--------TGTCC--------GTCT-----T----T------------CCGTaca
gi|16 : ttcagtatatcgaaaatatattatcgtgtcattAAA-GTGGGAGACACTAATTTGGGT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTatataagtcagtctgccagtccgtccgtcaca
gi|17 : caaatacacatacagaccatttcaatagaatagttttaattggtgattataaaagaaatgttttgtccccGTCCCC-TGCTTTGCGGAAA-GCGGCAGACACTAATTTTTGT---C--------CGTCC--------GTCC-----G----T------------CCGTCCt
gi|18 : aacatttttatgttgagagtttattttagttctttgcgaaaacgacggtcggtttttGTCCTC-CGCTTTGCGAAAA-GCGGGAAATAGTTATTTTGGT---A--------TGTCC--------GTGT-----G----C------------CTGTCTGTTCATC
gi|19 : gaatgaaatgtgttaatacatttttGCCCTC-TGCTTTGCGAAAAAGCAGGAGATACCAATTTGGG-------------TGT-C--------ATCT-----G----T------------CTGtgtctttctgtctgtcggtccgt
gi|2 : atatcttttgcaaagttatttacattttcacctattattcatccatatttttTCTCCACGCTTTGCAAAAA-GCAGGAGACATTAATTTGGGT---CCGTCTATCTGTCC--------ATAC-----G----T------------CTGTTTGTCCTTCAAAATTT-GGTTTCCA---TGCAATAACC-TAAG-AATTCCTGA-TCACTTCTTTTGAAATTCTAATATAATGTTTATAATGACAAAACACAGGCCAAGTTCAATTTTCAAGGTTGTGACTTTTGGCATT-GGTCAGTTGTGCTTCTTTA
gi|20 : tcaaatgttaatttatgtaatgtttttGTCCCC-CGTTTTGCGAAAA-GTGGGAGACACTAATTTCGAT---C--------TGTCT--------GTCT-----G----T------------CTGTCTGTC
gi|21 : aattgggtagggggtggggtgcatgctcccacatacatttttGTCCCC-CGCTTTGCGAAAA-GCCGGAGATACTAATTTGGGT---C--------TGTCC--------GTCT-----G----T------------C
gi|22 : gcatttgtttggggatcgtccatttgttctactgaaaccatcattattCC-CAATTTGCGAAAA-GTGGGAGACACTAATTTGGGT---C--------TGTCT--------GCCC-----G----
gi|23 : taaataaacaatttgaaaaatggttccttttgaaaaaaaatttaGTCCCC-CGATTTGCGAAAA---------CACTAATCTG---------------TGTCC--------GTCC-----G----T------------CAATCCGTCCATCACAC-TTTGGTTTCCG---TGCctcacctgc
gi|24 : cattacatttttGTCCCC-CGCTTTGCAAAAA-GCAGGAGGCACTAATctgaaccaaatctttt
gi|25 : aaataatggctttgccataacaatagataatgcagattggtgctaagtagttttaatgctttaatCCCC-CGCTTTCAGAAAT-ATGGGAGACGCTAACTTTGGT---C--------CCTCC--------ATAT-----G----T------------CCGTCCATCCATC
gi|26 : aatttaagctattaatattatacatgtttttaGTCCAC-CAATATGCGAAAA-GTGG-AGACAATAATTTGGGT---C--------TGTCC--------GCCT-----G----T------------CTGcaa
gi|27 : ttaaatctgttgatggatgatgatgataattGTCCCC-CGCTTTGCGAAAA-GCGAGAGACCCTAATTTGGGTAGACA-------TGTCT--------GTCA-----G----T------------CCATC
gi|28 : ttaagtgctttctgtttttTTTGCGAAAA-G----AGACACTAATTTGGGT---C--------T---------------------G----T------------CCATCCATCCATCACA-TTTTGGTTTCCA---GGCAATAACT-T
gi|29 : tgttcctatgTTTTGTCCCCC-----C-TGCTTTGCAAAAG-GCTAGAGACACTAATTTGGGT---C--------TCTCT--------GT
gi|3 : ctctttaaataaagatctaatTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTGGGT---T--------TGTCC--------GTCC-----G----T------------TTGCCTGTTCGTCGCACTTTTGGTTTCCA---TGCAATAATT-TAAG-AATGTATGATTCAAATCTTC--AAATTTTAATACAATGTTTATAATGACAAAGCACAGGCTAAGTTCGATTTTATGGGTTGTGGCAATTGTCGTT-CTACAATTATGCCCCTTTAgca
gi|30 : gTTCCT-CACTTTGCGAAAA-GCGGGAG--ACTAATTTGGGT---C--------CGTCT--------GTCt
gi|31 : ttataataaagcatgtacaaactttttttaTTTCCCGAAA-GCGCGAGACACTAATTTGGGT---C--------TGTCT--------GTCC-----G----T------------ACGTa
gi|32 : caaatttgggaatttccataaatgttttGCTTTGAGAAAA-GCCAAAGACACTAATTTGGGT---C--------TGTC
gi|33 : aaatcaatgtattacaatgtacttcgaaatTTTGTGAAAA-GCGGGAGACACTAATTTGGGT---C--------TGTCC--------ATCC-----A----T------------CTG
gi|34 : tcctgctttgcaaaGGGAAACACTAATTTGGGT---C--------TGTCC--------ATCT-----G----T------------C
gi|35 : gtaaatcttctttatgtcccccatgGTTTTGCGAAAA-GCGGGCGACACTAATTTGGAT---C--------CGTGT--------GTCT-----G----T------------CTGTCCGTTCGT
gi|36 : AGACACTTATTTGGGT---C--------TGTCC--------TTCC-----G----T------------TCATCCGTCCGTC
gi|37 : ataaaataaTGTGGAAA-GCGG-AGACACTAATTTGGGT---C--------TGTCT--------GTCT-----G----T------------Ccgtctg
gi|38 : GAAGACACTAATTTGGGT---C--------TGTCC--------ATCC-----ag
gi|4 : acaaatttggtaatAAA-GTGGGAGACACTAATTTTGGT---C--------TGTAC--------GTCC-----G----TATGTCCGTATGTCCGTCTGTCCATCACACTTTTGGTTGCTG---TGCAATAACT-T--G-AATGTCTGAATCAAATCTTT-GAAATTTGAACACAATGTTTATTATGATAAAACACAGGCTAAGTTTGATTTTCAGGGTTGTGATTCTTA--G-T------ATTCTGCCCCTTTA
gi|5 : cccctatgttcacGTCTAC-GGCTTCGCGAAAA-GCGAGATACACTAATTTGGGT---C--------TGTACGTATGTATGTCC-----G----T------------CTGTCTGTCCGTCAAAC-TTTGGTGTACGTTATG-AATAACTCTAAGTAAGGTCTG
gi|6 : gtatctgtggtggagcgtcaacatattgttatcaagattcttctttttGTCCCC-CTCTTTGCTAAAA-GCGGGGGACACTAATTTTGTT---C--------CGTCC--------GTCCAGTCAG----T------------CTGTCCGTCCGTCtgatagcagaatgttt
gi|7 : gacacattaagtgtttggtcaaatcagtggctattaatgtccaatgtcgataagtgtagaacgctacatttgggtcataacaaccaggaaatagtttataattGTCTTC-TGCTTTGCGAAAA-GCAGGAGACACTAATTTAGGT---C--------CGTCC--------ATCT-----G----T------------CCGTCCGTCTGTCcatct
gi|8 : tgatcaaatcccattggccgtcatgtttgataactgttctgtttacaccgccttgcatacagttgggtctgtgaaaggaatttttCGCTAATTTGGGT---C--------TGTCC--------GTCcatctgtctgtctg
gi|8 : gttcatatgtcagttgtattgttttgttccccagGTTTATAATGGCAAAACACAGGCTAAGTTTGAATTAAGGGGTGGTGACTTTTGTTG-TAAGACAGTTGTGCCCCTTTAtaataccgtgcaataactttagtttataatggcaaaacacaggctaagtttgaattaaggggtggtgacttttgttgtaagacagttgtgcccctttaatttttga
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TTATAATATACCAAAAGTTAGTTCTCTATAATTATTATTCAGGGAGACATTGTTTTATGTTCTGTCTGTCCATCTGTCTGCCAGTCAATCCATCCATCTGTCTGTTAAAAACTTTGTCCATACAAATCCTCCTAAAATGTTCATAAAATGGG
Alignments
lowQualScore : 11111 1111 11 11 22222 2222
lowQualScore : 1 1 1 2222 111 55555555 44444444 333333 2222 666666666666 55555 777 5 2222 66 8 11 99999 8 0 3 66 1 99 0000 0
lowQualScore : . . . .... ... ........ ........ ...... .... ............ ..... ... . .... .. . .. ..... . . . .. . .. .... .
lowQualScore : 7 2 1 4444 999 11111111 11111111 333333 6666 444444444444 66666 000 0 2222 88 0 00 88888 0 8 2 88 2 55 2222 2
consensus : NTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTCCGTCACA--CT-TTTGGTTTCCG---TGCAATAACT-TAAG-AATGTCCGA-T-CAAAT--CTT-C--GA-AATTTTAATACAATGTTTATAATGACAAAACACAGGCTAAGTTCGATTTTCGGGGTTGTGACTTTTGTCGTTNGACAGTTGTGCCCCTTTA
Reference ( family-563 ) : NTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTCCGTCACA--CT-TTTGGTTTCCG---TGCAATAACT-TAAG-AATGTCTGA-T-CAAAT--CTT-C--GA-AATTTTAATACAATGTTTATAATGACAAAACACAGGCTAAGTTCGATTTTCGGGGTTGTGACTTTTGTCGTTNGACAGTTGTGCCCCTTTA
gi|1 : CCCC-CGCATTGCAAAAA-TCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----GTCCTT------------CCGTCCGTCCGTCACA--C
gi|10 : gctattgttaattgtaaaatgatttcaattgcaaactgcagagggcctttgttaagaaataaaaggaagcaaacaatgtttccgaaaatacatcacagttcatcttttaagtatctaaaggttgaatgacgatacacaattctttttacataaaaataagaatttatctatcaatatatcagcagtcattttaagttgcaatttcattactgtcGTCCCC-CGCTTTGTGTAAA-GCGGGAGACACTAATTTT-G----GT---C--------TGTCT--------GTC------------------------TTGTCTGTCCATTACA--C--TTTGGTTTCCA---TGCA
gi|11 : tatgtactgtcatgtgaagctagaaatgtaatagtttaatcatagcttgttgtttattAAA-GTGGGAGACATTAATTTG-G----GT---C--------TGTCA--------GTCG-----G----T------------CGGTCTGTCTGTCACA--CT-TTTGGTTTCCG---TGCAATAACT-T
gi|12 : aaattaccagttaaaacatgttttttgtttttaataaagttatttcaatgtttcacGTCCCT-GGCGTTGCGAAAA-GTGGGAGACAC-AATTT--------T---T--------TGTAT--------GTCC-----G----T------------CTGTCTGTCC
gi|13 : tggatttgtgcataatgaggaggttaaaatctgtcttcaaaatctgtttattttttCCCC-CGCTTTGCGATCA-ACGGGACACACTTATTTG-G----GT---C--------CGTCC--------GTCC-----G----T------------CCGTCCATCtcgctgtctgtctgtcac
gi|14 : cataacaatggatcaagaattgttttaattttaattaaagtatttgacggtcaattttcgtcattttcGTCCCC-TGCTTTGCGAAAA-GCTGGAGACACTAATTTG-G----GT---C--------GGTCT--------GTCG-----A----T------------CTGTTCATCac
gi|15 : tctgtacactgtagaaggtcattgaataatattattatacaactttacaatgtttttaatGTCCCC-CGTTTTACGAAAA-GTAGGATACACTTATTTG-A----GT---A--------TGTCC--------GTCT-----T----T------------CCGTaca
gi|16 : ttcagtatatcgaaaatatattatcgtgtcattAAA-GTGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTatataagtcagtctgccagtccgtccgtcaca
gi|17 : caaatacacatacagaccatttcaatagaatagttttaattggtgattataaaagaaatgttttgtccccGTCCCC-TGCTTTGCGGAAA-GCGGCAGACACTAATTTT-T----GT---C--------CGTCC--------GTCC-----G----T------------CCGTCCt
gi|18 : aacatttttatgttgagagtttattttagttctttgcgaaaacgacggtcggtttttGTCCTC-CGCTTTGCGAAAA-GCGGGAAATAGTTATTTT-G----GT---A--------TGTCC--------GTGT-----G----C------------CTGTCTGTTCATC
gi|19 : gaatgaaatgtgttaatacatttttGCCCTC-TGCTTTGCGAAAAAGCAGGAGATACCAATTTG-G----G-------------TGT-C--------ATCT-----G----T------------CTGtgtctttctgtctgtcggtccgt
gi|2 : atatcttttgcaaagttatttacattttcacctattattcatccatatttttTCTCCACGCTTTGCAAAAA-GCAGGAGACATTAATTTG-G----GT---CCGTCTATCTGTCC--------ATAC-----G----T------------CTGTTTGTCCTTCAAA--AT-TT-GGTTTCCA---TGCAATAACC-TAAG-AATTCCTGA-T-CACTT--CTT-TT-GA-AATTCTAATATAATGTTTATAATGACAAAACACAGGCCAAGTTCAATTTTCAAGGTTGTGACTTTTGGCATTGGTCAGTTGTGCTTCTTTA
gi|20 : tcaaatgttaatttatgtaatgtttttGTCCCC-CGTTTTGCGAAAA-GTGGGAGACACTAATTTC-G----AT---C--------TGTCT--------GTCT-----G----T------------CTGTCTGTC
gi|21 : aattgggtagggggtggggtgcatgctcccacatacatttttGTCCCC-CGCTTTGCGAAAA-GCCGGAGATACTAATTTG-G----GT---C--------TGTCC--------GTCT-----G----T------------C
gi|22 : gcatttgtttggggatcgtccatttgttctactgaaaccatcattattCC-CAATTTGCGAAAA-GTGGGAGACACTAATTTG-G----GT---C--------TGTCT--------GCCC-----G----
gi|23 : taaataaacaatttgaaaaatggttccttttgaaaaaaaatttaGTCCCC-CGATTTGCGAAAA---------CACTAATCTG--------------------TGTCC--------GTCC-----G----T------------CAATCCGTCCATCACA--C--TTTGGTTTCCG---TGCctcacctgc
gi|24 : cattacatttttGTCCCC-CGCTTTGCAAAAA-GCAGGAGGCACTAATctgaaccaaatctttt
gi|25 : aaataatggctttgccataacaatagataatgcagattggtgctaagtagttttaatgctttaatCCCC-CGCTTTCAGAAAT-ATGGGAGACGCTAACTTT-G----GT---C--------CCTCC--------ATAT-----G----T------------CCGTCCATCCATC
gi|26 : aatttaagctattaatattatacatgtttttaGTCCAC-CAATATGCGAAAA-GTGG-AGACAATAATTTG-G----GT---C--------TGTCC--------GCCT-----G----T------------CTGcaa
gi|27 : ttaaatctgttgatggatgatgatgataattGTCCCC-CGCTTTGCGAAAA-GCGAGAGACCCTAATTTG-G----GTAGACA-------TGTCT--------GTCA-----G----T------------CCATC
gi|28 : ttaagtgctttctgtttttTTTGCGAAAA-G----AGACACTAATTTG-G----GT---C--------T---------------------G----T------------CCATCCATCCATCACA---T-TTTGGTTTCCA---GGCAATAACT-T
gi|29 : tgttcctatgTTTTGTCCCCC-----C-TGCTTTGCAAAAG-GCTAGAGACACTAATTTG-G----GT---C--------TCTCT--------GT
gi|3 : ctctttaaataaagatctaatTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTG-G----GT---T--------TGTCC--------GTCC-----G----T------------TTGCCTGTTCGTCGCA--CT-TTTGGTTTCCA---TGCAATAATT-TAAG-AATGTATGATT-CAAAT--CTT-C---A-AATTTTAATACAATGTTTATAATGACAAAGCACAGGCTAAGTTCGATTTTATGGGTTGTGGCAATTGTCGTTCTACAATTATGCCCCTTTAgca
gi|30 : gTTCCT-CACTTTGCGAAAA-GCGGGAG--ACTAATTTG-G----GT---C--------CGTCT--------GTCt
gi|31 : ttataataaagcatgtacaaactttttttaTTTCCCGAAA-GCGCGAGACACTAATTTG-G----GT---C--------TGTCT--------GTCC-----G----T------------ACGTa
gi|32 : caaatttgggaatttccataaatgttttGCTTTGAGAAAA-GCCAAAGACACTAATTTG-G----GT---C--------TGTC
gi|33 : aaatcaatgtattacaatgtacttcgaaatTTTGTGAAAA-GCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------ATCC-----A----T------------CTG
gi|34 : tcctgctttgcaaaGGGAAACACTAATTTG-G----GT---C--------TGTCC--------ATCT-----G----T------------C
gi|35 : gtaaatcttctttatgtcccccatgGTTTTGCGAAAA-GCGGGCGACACTAATTTG-G----AT---C--------CGTGT--------GTCT-----G----T------------CTGTCCGTTCGT
gi|36 : AGACACTTATTTG-G----GT---C--------TGTCC--------TTCC-----G----T------------TCATCCGTCCGTC
gi|37 : ataaaataaTGTGGAAA-GCGG-AGACACTAATTTG-G----GT---C--------TGTCT--------GTCT-----G----T------------Ccgtctg
gi|38 : GAAGACACTAATTTG-G----GT---C--------TGTCC--------ATCC-----ag
gi|4 : acaaatttggtaatAAA-GTGGGAGACACTAATTTT-G----GT---C--------TGTAC--------GTCC-----G----TATGTCCGTATGTCCGTCTGTCCATCACA--CT-TTTGGTTGCTG---TGCAATAACT-T--G-AATGTCTGAAT-CAAAT--CTT-T--GA-AATTTGAACACAATGTTTATTATGATAAAACACAGGCTAAGTTTGATTTTCAGGGTTGTGATTCTTA--GT------ATTCTGCCCCTTTA
gi|5 : cccctatgttcacGTCTAC-GGCTTCGCGAAAA-GCGAGATACACTAATTTG-G----GT---C--------TGTACGTATGTATGTCC-----G----T------------CTGTCTGTCCGTCAAA--C--TTTGGTGTACGTTATG-AATAACTCTAAGTAAGGTCTG
gi|6 : gtatctgtggtggagcgtcaacatattgttatcaagattcttctttttGTCCCC-CTCTTTGCTAAAA-GCGGGGGACACTAATTTT-G----TT---C--------CGTCC--------GTCCAGTCAG----T------------CTGTCCGTCCGTCtgatagcagaatgttt
gi|7 : gacacattaagtgtttggtcaaatcagtggctattaatgtccaatgtcgataagtgtagaacgctacatttgggtcataacaaccaggaaatagtttataattGTCTTC-TGCTTTGCGAAAA-GCAGGAGACACTAATTTA-G----GT---C--------CGTCC--------ATCT-----G----T------------CCGTCCGTCTGTCcatct
gi|8 : tgatcaaatcccattggccgtcatgtttgataactgttctgtttacaccgccttgcatacagttgggtctgtgaaaggaattttt-----G----T------------TCATATGTCAGTTGTA--TTGTTTTGTTCCCC---AGCGCTAATT-TGGG-TCTGTCCG--T-CTAATACCGTGC--AATAACTTTA-------GTTTATAATGGCAAAACACAGGCTAAGTTTGAATTAAGGGGTGGTGACTTTTGTTGTAAGACAGTTGTGCCCCTTTAcatctgtctgtctg
gi|9 : GGGAGACATTGTTTTATGTTCTGT---C--------TGTCC--------ATCT-----G----T------------CTGCCAGTCAATC-CATCCA-TCTG---TCTG---T-TAAAAACT-T------TGTCC-A-TACAAAT--CCT-CCTAA-AATGTTCATAAAATGatttttga
Alignments
lowQualScore : 11111 1111 11 11 22222 2222
lowQualScore : 1 1 1 2222 111 55555555 44444444 333333 2222 666666666666 55555 777 5 2222 0 66 8 11 99999 8 0 3 66 1 99 0000 0
lowQualScore : . . . .... ... ........ ........ ...... .... ............ ..... ... . .... . .. . .. ..... . . . .. . .. .... .
lowQualScore : 7 2 1 4444 999 11111111 11111111 333333 6666 444444444444 66666 000 0 2222 7 88 0 00 88888 0 8 2 88 2 55 2222 2
consensus : NTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTCCGTCACA--CT-TTTGGTTTCCG---TGCAATAACT-TAAG-AATGTCCGA-T-CAAAT--CTT-C--GA-AATTTTAATACAATGTTTATAATGACAAAACACAGGCTAAGTTCGATTTTCGGGGTTGTGACTTTTGTCGTTNGACAGTTGTGCCCCTTTA
Reference ( family-563 ) : NTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTCCGTCACA--CT-TTTGGTTTCCG---TGCAATAACT-TAAG-AATGTCCGA-T-CAAAT--CTT-C--GA-AATTTTAATACAATGTTTATAATGACAAAACACAGGCTAAGTTCGATTTTCGGGGTTGTGACTTTTGTCGTTNGACAGTTGTGCCCCTTTA
gi|1 : CCCC-CGCATTGCAAAAA-TCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----GTCCTT------------CCGTCCGTCCGTCACA--C
gi|10 : gctattgttaattgtaaaatgatttcaattgcaaactgcagagggcctttgttaagaaataaaaggaagcaaacaatgtttccgaaaatacatcacagttcatcttttaagtatctaaaggttgaatgacgatacacaattctttttacataaaaataagaatttatctatcaatatatcagcagtcattttaagttgcaatttcattactgtcGTCCCC-CGCTTTGTGTAAA-GCGGGAGACACTAATTTT-G----GT---C--------TGTCT--------GTC------------------------TTGTCTGTCCATTACA--C--TTTGGTTTCCA---TGCA
gi|11 : tatgtactgtcatgtgaagctagaaatgtaatagtttaatcatagcttgttgtttattAAA-GTGGGAGACATTAATTTG-G----GT---C--------TGTCA--------GTCG-----G----T------------CGGTCTGTCTGTCACA--CT-TTTGGTTTCCG---TGCAATAACT-T
gi|12 : aaattaccagttaaaacatgttttttgtttttaataaagttatttcaatgtttcacGTCCCT-GGCGTTGCGAAAA-GTGGGAGACAC-AATTT--------T---T--------TGTAT--------GTCC-----G----T------------CTGTCTGTCC
gi|13 : tggatttgtgcataatgaggaggttaaaatctgtcttcaaaatctgtttattttttCCCC-CGCTTTGCGATCA-ACGGGACACACTTATTTG-G----GT---C--------CGTCC--------GTCC-----G----T------------CCGTCCATCtcgctgtctgtctgtcac
gi|14 : cataacaatggatcaagaattgttttaattttaattaaagtatttgacggtcaattttcgtcattttcGTCCCC-TGCTTTGCGAAAA-GCTGGAGACACTAATTTG-G----GT---C--------GGTCT--------GTCG-----A----T------------CTGTTCATCac
gi|15 : tctgtacactgtagaaggtcattgaataatattattatacaactttacaatgtttttaatGTCCCC-CGTTTTACGAAAA-GTAGGATACACTTATTTG-A----GT---A--------TGTCC--------GTCT-----T----T------------CCGTaca
gi|16 : ttcagtatatcgaaaatatattatcgtgtcattAAA-GTGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTatataagtcagtctgccagtccgtccgtcaca
gi|17 : caaatacacatacagaccatttcaatagaatagttttaattggtgattataaaagaaatgttttgtccccGTCCCC-TGCTTTGCGGAAA-GCGGCAGACACTAATTTT-T----GT---C--------CGTCC--------GTCC-----G----T------------CCGTCCt
gi|18 : aacatttttatgttgagagtttattttagttctttgcgaaaacgacggtcggtttttGTCCTC-CGCTTTGCGAAAA-GCGGGAAATAGTTATTTT-G----GT---A--------TGTCC--------GTGT-----G----C------------CTGTCTGTTCATC
gi|19 : gaatgaaatgtgttaatacatttttGCCCTC-TGCTTTGCGAAAAAGCAGGAGATACCAATTTG-G----G-------------TGT-C--------ATCT-----G----T------------CTGtgtctttctgtctgtcggtccgt
gi|2 : atatcttttgcaaagttatttacattttcacctattattcatccatatttttTCTCCACGCTTTGCAAAAA-GCAGGAGACATTAATTTG-G----GT---CCGTCTATCTGTCC--------ATAC-----G----T------------CTGTTTGTCCTTCAAA--AT-TT-GGTTTCCA---TGCAATAACC-TAAG-AATTCCTGA-T-CACTT--CTT-TT-GA-AATTCTAATATAATGTTTATAATGACAAAACACAGGCCAAGTTCAATTTTCAAGGTTGTGACTTTTGGCATTGGTCAGTTGTGCTTCTTTA
gi|20 : tcaaatgttaatttatgtaatgtttttGTCCCC-CGTTTTGCGAAAA-GTGGGAGACACTAATTTC-G----AT---C--------TGTCT--------GTCT-----G----T------------CTGTCTGTC
gi|21 : aattgggtagggggtggggtgcatgctcccacatacatttttGTCCCC-CGCTTTGCGAAAA-GCCGGAGATACTAATTTG-G----GT---C--------TGTCC--------GTCT-----G----T------------C
gi|22 : gcatttgtttggggatcgtccatttgttctactgaaaccatcattattCC-CAATTTGCGAAAA-GTGGGAGACACTAATTTG-G----GT---C--------TGTCT--------GCCC-----G----
gi|23 : taaataaacaatttgaaaaatggttccttttgaaaaaaaatttaGTCCCC-CGATTTGCGAAAA---------CACTAATCTG--------------------TGTCC--------GTCC-----G----T------------CAATCCGTCCATCACA--C--TTTGGTTTCCG---TGCctcacctgc
gi|24 : cattacatttttGTCCCC-CGCTTTGCAAAAA-GCAGGAGGCACTAATctgaaccaaatctttt
gi|25 : aaataatggctttgccataacaatagataatgcagattggtgctaagtagttttaatgctttaatCCCC-CGCTTTCAGAAAT-ATGGGAGACGCTAACTTT-G----GT---C--------CCTCC--------ATAT-----G----T------------CCGTCCATCCATC
gi|26 : aatttaagctattaatattatacatgtttttaGTCCAC-CAATATGCGAAAA-GTGG-AGACAATAATTTG-G----GT---C--------TGTCC--------GCCT-----G----T------------CTGcaa
gi|27 : ttaaatctgttgatggatgatgatgataattGTCCCC-CGCTTTGCGAAAA-GCGAGAGACCCTAATTTG-G----GTAGACA-------TGTCT--------GTCA-----G----T------------CCATC
gi|28 : ttaagtgctttctgtttttTTTGCGAAAA-G----AGACACTAATTTG-G----GT---C--------T---------------------G----T------------CCATCCATCCATCACA---T-TTTGGTTTCCA---GGCAATAACT-T
gi|29 : tgttcctatgTTTTGTCCCCC-----C-TGCTTTGCAAAAG-GCTAGAGACACTAATTTG-G----GT---C--------TCTCT--------GT
gi|3 : ctctttaaataaagatctaatTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTG-G----GT---T--------TGTCC--------GTCC-----G----T------------TTGCCTGTTCGTCGCA--CT-TTTGGTTTCCA---TGCAATAATT-TAAG-AATGTATGATT-CAAAT--CTT-C---A-AATTTTAATACAATGTTTATAATGACAAAGCACAGGCTAAGTTCGATTTTATGGGTTGTGGCAATTGTCGTTCTACAATTATGCCCCTTTAgca
gi|30 : gTTCCT-CACTTTGCGAAAA-GCGGGAG--ACTAATTTG-G----GT---C--------CGTCT--------GTCt
gi|31 : ttataataaagcatgtacaaactttttttaTTTCCCGAAA-GCGCGAGACACTAATTTG-G----GT---C--------TGTCT--------GTCC-----G----T------------ACGTa
gi|32 : caaatttgggaatttccataaatgttttGCTTTGAGAAAA-GCCAAAGACACTAATTTG-G----GT---C--------TGTC
gi|33 : aaatcaatgtattacaatgtacttcgaaatTTTGTGAAAA-GCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------ATCC-----A----T------------CTG
gi|34 : tcctgctttgcaaaGGGAAACACTAATTTG-G----GT---C--------TGTCC--------ATCT-----G----T------------C
gi|35 : gtaaatcttctttatgtcccccatgGTTTTGCGAAAA-GCGGGCGACACTAATTTG-G----AT---C--------CGTGT--------GTCT-----G----T------------CTGTCCGTTCGT
gi|36 : AGACACTTATTTG-G----GT---C--------TGTCC--------TTCC-----G----T------------TCATCCGTCCGTC
gi|37 : ataaaataaTGTGGAAA-GCGG-AGACACTAATTTG-G----GT---C--------TGTCT--------GTCT-----G----T------------Ccgtctg
gi|38 : GAAGACACTAATTTG-G----GT---C--------TGTCC--------ATCC-----ag
gi|4 : acaaatttggtaatAAA-GTGGGAGACACTAATTTT-G----GT---C--------TGTAC--------GTCC-----G----TATGTCCGTATGTCCGTCTGTCCATCACA--CT-TTTGGTTGCTG---TGCAATAACT-T--G-AATGTCTGAAT-CAAAT--CTT-T--GA-AATTTGAACACAATGTTTATTATGATAAAACACAGGCTAAGTTTGATTTTCAGGGTTGTGATTCTTA--GT------ATTCTGCCCCTTTA
gi|5 : cccctatgttcacGTCTAC-GGCTTCGCGAAAA-GCGAGATACACTAATTTG-G----GT---C--------TGTACGTATGTATGTCC-----G----T------------CTGTCTGTCCGTCAAA--C--TTTGGTGTACGTTATG-AATAACTCTAAGTAAGGTCTG
gi|6 : gtatctgtggtggagcgtcaacatattgttatcaagattcttctttttGTCCCC-CTCTTTGCTAAAA-GCGGGGGACACTAATTTT-G----TT---C--------CGTCC--------GTCCAGTCAG----T------------CTGTCCGTCCGTCtgatagcagaatgttt
gi|7 : gacacattaagtgtttggtcaaatcagtggctattaatgtccaatgtcgataagtgtagaacgctacatttgggtcataacaaccaggaaatagtttataattGTCTTC-TGCTTTGCGAAAA-GCAGGAGACACTAATTTA-G----GT---C--------CGTCC--------ATCT-----G----T------------CCGTCCGTCTGTCcatct
gi|8 : tgatcaaatcccattggccgtcatgtttgataactgttctgtttacaccgccttgcatacagttgggtctgtgaaaggaattttt-----G----T------------TCATATGTCAGTTGTA--TTGTTTTGTTCCCC---AGCGCTAATT-TGGG-TCTGTCCG--T-CTAATACCGTGC--AATAACTTTA-------GTTTATAATGGCAAAACACAGGCTAAGTTTGAATTAAGGGGTGGTGACTTTTGTTGTAAGACAGTTGTGCCCCTTTAcatctgtctgtctg
gi|9 : GGGAGACATTGTTTTATGTTCTGT---C--------TGTCC--------ATCT-----G----T------------CTGCCAGTCAATC-CATCCA-TCTG---TCTG---T-TAAAAACT-T------TGTCC-A-TACAAAT--CCT-CCTAA-AATGTTCATAAAATGatttttga
blockSeqs : A A T TTCT AGA CGTCTATC GTATGTAT CAGTCA . ATGTCCGTATGT TCCA TTA C AAGT AT A AC CCTA T C AT A TC TCTA
blockSeqs : . . . . . A . G . . TTG . . AAG AA . . GCA . C CA C TT AAGA
blockSeqs : . . . . . . . C . . CT . . GGG A . . TG . A AG T . .
blockSeqs : . . . . . . . C . . AT . . G . . . C . .
blockSeqs : . . . . . . . G . . CT . . .
blockSeqs : . . . . . . . T . . CT . .
blockSeqs : . . . . . . . C . . C . .
blockSeqs : . . . . . . . C . . T .
blockSeqs : . . . . . . . T . . C .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . C . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . C . .
blockSeqs : . . . . . . . C . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . A . .
blockSeqs : . . . . . . . C . .
blockSeqs : . . . . . . . C . .
blockSeqs : . . . . . . . C . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . C . .
blockSeqs : . . . . . . T . .
blockSeqs : . . . . . . C . .
blockSeqs : . . . . . . C . .
blockSeqs : . . . . . . C . .
blockSeqs : . . . . . . T . .
blockSeqs : . . . . . . T . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqCons : **** CT*** ** G****
originalCons : NTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTCCGTCACA--CT-TTTGGTTTCCG---TGCAATAACT-TAAG-AATGTCCGA-T-CAAAT--CTT-C--GA-AATTTTAATACAATGTTTATAATGACAAAACACAGGCTAAGTTCGATTTTCGGGGTTGTGACTTTTGTCGTTNGACAGTTGTGCCCCTTTA
finalCons : NTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTCCGTCACACT---TTTGGTTTCCG---TGCAATAACT-TAAG-AATGTCCG--T-CAAAT--CTTG----A-AATTTTAATACAATGTTTATAATGACAAAACACAGGCTAAGTTCGATTTTCGGGGTTGTGACTTTTGTCGTTNGACAGTTGTGCCCCTTTA
Alignments
lowQualScore : 11111 1111 22 111111 11 111 2222
lowQualScore : 1 1 1 2222 111 55555555 44444444 333333 2222 666666666666 55555 777 5 2222 0 55 6 666666 99 444 0 3 66 1 99 0000 0
lowQualScore : . . . .... ... ........ ........ ...... .... ............ ..... ... . .... . .. . ...... .. ... . . .. . .. .... .
lowQualScore : 7 2 1 4444 999 11111111 11111111 333333 6666 444444444444 66666 000 0 2222 7 00 7 000000 00 000 8 2 88 2 55 2222 2
consensus : NTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTCCGTCACA--CT-TTTGGTTTCCG---TGCAATAACT-TAAG-AATGTCCGA-T-CAAA---T--CTTT-GAAAT---TTTAATACAATGTTTATAATGACAAAACACAGGCTAAGTTCGATTTTCGGGGTTGTGACTTTTGTCGTTNGACAGTTGTGCCCCTTTA
Reference ( family-563 ) : NTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTCCGTCACA--CT-TTTGGTTTCCG---TGCAATAACT-TAAG-AATGTCCG--T-CAAA---T--CTT--GAAAT---TTTAATACAATGTTTATAATGACAAAACACAGGCTAAGTTCGATTTTCGGGGTTGTGACTTTTGTCGTTNGACAGTTGTGCCCCTTTA
gi|1 : CCCC-CGCATTGCAAAAA-TCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----GTCCTT------------CCGTCCGTCCGTCACA--C
gi|10 : gctattgttaattgtaaaatgatttcaattgcaaactgcagagggcctttgttaagaaataaaaggaagcaaacaatgtttccgaaaatacatcacagttcatcttttaagtatctaaaggttgaatgacgatacacaattctttttacataaaaataagaatttatctatcaatatatcagcagtcattttaagttgcaatttcattactgtcGTCCCC-CGCTTTGTGTAAA-GCGGGAGACACTAATTTT-G----GT---C--------TGTCT--------GTC------------------------TTGTCTGTCCATTACA--C--TTTGGTTTCCA---TGCA
gi|11 : tatgtactgtcatgtgaagctagaaatgtaatagtttaatcatagcttgttgtttattAAA-GTGGGAGACATTAATTTG-G----GT---C--------TGTCA--------GTCG-----G----T------------CGGTCTGTCTGTCACA--CT-TTTGGTTTCCG---TGCAATAACT-T
gi|12 : aaattaccagttaaaacatgttttttgtttttaataaagttatttcaatgtttcacGTCCCT-GGCGTTGCGAAAA-GTGGGAGACAC-AATTT--------T---T--------TGTAT--------GTCC-----G----T------------CTGTCTGTCC
gi|13 : tggatttgtgcataatgaggaggttaaaatctgtcttcaaaatctgtttattttttCCCC-CGCTTTGCGATCA-ACGGGACACACTTATTTG-G----GT---C--------CGTCC--------GTCC-----G----T------------CCGTCCATCtcgctgtctgtctgtcac
gi|14 : cataacaatggatcaagaattgttttaattttaattaaagtatttgacggtcaattttcgtcattttcGTCCCC-TGCTTTGCGAAAA-GCTGGAGACACTAATTTG-G----GT---C--------GGTCT--------GTCG-----A----T------------CTGTTCATCac
gi|15 : tctgtacactgtagaaggtcattgaataatattattatacaactttacaatgtttttaatGTCCCC-CGTTTTACGAAAA-GTAGGATACACTTATTTG-A----GT---A--------TGTCC--------GTCT-----T----T------------CCGTaca
gi|16 : ttcagtatatcgaaaatatattatcgtgtcattAAA-GTGGGAGACACTAATTTG-G----GT---C--------TGTCC--------GTCC-----G----T------------CCGTCCGTatataagtcagtctgccagtccgtccgtcaca
gi|17 : caaatacacatacagaccatttcaatagaatagttttaattggtgattataaaagaaatgttttgtccccGTCCCC-TGCTTTGCGGAAA-GCGGCAGACACTAATTTT-T----GT---C--------CGTCC--------GTCC-----G----T------------CCGTCCt
gi|18 : aacatttttatgttgagagtttattttagttctttgcgaaaacgacggtcggtttttGTCCTC-CGCTTTGCGAAAA-GCGGGAAATAGTTATTTT-G----GT---A--------TGTCC--------GTGT-----G----C------------CTGTCTGTTCATC
gi|19 : gaatgaaatgtgttaatacatttttGCCCTC-TGCTTTGCGAAAAAGCAGGAGATACCAATTTG-G----G-------------TGT-C--------ATCT-----G----T------------CTGtgtctttctgtctgtcggtccgt
gi|2 : atatcttttgcaaagttatttacattttcacctattattcatccatatttttTCTCCACGCTTTGCAAAAA-GCAGGAGACATTAATTTG-G----GT---CCGTCTATCTGTCC--------ATAC-----G----T------------CTGTTTGTCCTTCAAA--AT-TT-GGTTTCCA---TGCAATAACC-TAAG-AATTCCTGA-T-CACT---T--CTTTTGAAAT---TCTAATATAATGTTTATAATGACAAAACACAGGCCAAGTTCAATTTTCAAGGTTGTGACTTTTGGCATTGGTCAGTTGTGCTTCTTTA
gi|20 : tcaaatgttaatttatgtaatgtttttGTCCCC-CGTTTTGCGAAAA-GTGGGAGACACTAATTTC-G----AT---C--------TGTCT--------GTCT-----G----T------------CTGTCTGTC
gi|21 : aattgggtagggggtggggtgcatgctcccacatacatttttGTCCCC-CGCTTTGCGAAAA-GCCGGAGATACTAATTTG-G----GT---C--------TGTCC--------GTCT-----G----T------------C
gi|22 : gcatttgtttggggatcgtccatttgttctactgaaaccatcattattCC-CAATTTGCGAAAA-GTGGGAGACACTAATTTG-G----GT---C--------TGTCT--------GCCC-----G----
gi|23 : taaataaacaatttgaaaaatggttccttttgaaaaaaaatttaGTCCCC-CGATTTGCGAAAA---------CACTAATCTG--------------------TGTCC--------GTCC-----G----T------------CAATCCGTCCATCACA--C--TTTGGTTTCCG---TGCctcacctgc
gi|24 : cattacatttttGTCCCC-CGCTTTGCAAAAA-GCAGGAGGCACTAATctgaaccaaatctttt
gi|25 : aaataatggctttgccataacaatagataatgcagattggtgctaagtagttttaatgctttaatCCCC-CGCTTTCAGAAAT-ATGGGAGACGCTAACTTT-G----GT---C--------CCTCC--------ATAT-----G----T------------CCGTCCATCCATC
gi|26 : aatttaagctattaatattatacatgtttttaGTCCAC-CAATATGCGAAAA-GTGG-AGACAATAATTTG-G----GT---C--------TGTCC--------GCCT-----G----T------------CTGcaa
gi|27 : ttaaatctgttgatggatgatgatgataattGTCCCC-CGCTTTGCGAAAA-GCGAGAGACCCTAATTTG-G----GTAGACA-------TGTCT--------GTCA-----G----T------------CCATC
gi|28 : ttaagtgctttctgtttttTTTGCGAAAA-G----AGACACTAATTTG-G----GT---C--------T---------------------G----T------------CCATCCATCCATCACA---T-TTTGGTTTCCA---GGCAATAACT-T
gi|29 : tgttcctatgTTTTGTCCCCC-----C-TGCTTTGCAAAAG-GCTAGAGACACTAATTTG-G----GT---C--------TCTCT--------GT
gi|3 : ctctttaaataaagatctaatTTTTGTCCCCCGTCCCC-CGCTTTGCGAAAA-GCGGGAGACACTAATTTG-G----GT---T--------TGTCC--------GTCC-----G----T------------TTGCCTGTTCGTCGCA--CT-TTTGGTTTCCA---TGCAATAATT-TAAG-AATGTATGATT-CAAA---T--CTT--CAAAT---TTTAATACAATGTTTATAATGACAAAGCACAGGCTAAGTTCGATTTTATGGGTTGTGGCAATTGTCGTTCTACAATTATGCCCCTTTAgca
gi|30 : gTTCCT-CACTTTGCGAAAA-GCGGGAG--ACTAATTTG-G----GT---C--------CGTCT--------GTCt
gi|31 : ttataataaagcatgtacaaactttttttaTTTCCCGAAA-GCGCGAGACACTAATTTG-G----GT---C--------TGTCT--------GTCC-----G----T------------ACGTa
gi|32 : caaatttgggaatttccataaatgttttGCTTTGAGAAAA-GCCAAAGACACTAATTTG-G----GT---C--------TGTC
gi|33 : aaatcaatgtattacaatgtacttcgaaatTTTGTGAAAA-GCGGGAGACACTAATTTG-G----GT---C--------TGTCC--------ATCC-----A----T------------CTG
gi|34 : tcctgctttgcaaaGGGAAACACTAATTTG-G----GT---C--------TGTCC--------ATCT-----G----T------------C
gi|35 : gtaaatcttctttatgtcccccatgGTTTTGCGAAAA-GCGGGCGACACTAATTTG-G----AT---C--------CGTGT--------GTCT-----G----T------------CTGTCCGTTCGT
gi|36 : AGACACTTATTTG-G----GT---C--------TGTCC--------TTCC-----G----T------------TCATCCGTCCGTC
gi|37 : ataaaataaTGTGGAAA-GCGG-AGACACTAATTTG-G----GT---C--------TGTCT--------GTCT-----G----T------------Ccgtctg
gi|38 : GAAGACACTAATTTG-G----GT---C--------TGTCC--------ATCC-----ag
gi|4 : acaaatttggtaatAAA-GTGGGAGACACTAATTTT-G----GT---C--------TGTAC--------GTCC-----G----TATGTCCGTATGTCCGTCTGTCCATCACA--CT-TTTGGTTGCTG---TGCAATAACT-T--G-AATGTCTGAAT-CAAA---T--CTTT-GAAAT---TTGAACACAATGTTTATTATGATAAAACACAGGCTAAGTTTGATTTTCAGGGTTGTGATTCTTA--GT------ATTCTGCCCCTTTA
gi|5 : cccctatgttcacGTCTAC-GGCTTCGCGAAAA-GCGAGATACACTAATTTG-G----GT---C--------TGTACGTATGTATGTCC-----G----T------------CTGTCTGTCCGTCAAA--C--TTTGGTGTACGTTATG-AATAACTCTAAGTAAGGTCTG--T-
gi|6 : gtatctgtggtggagcgtcaacatattgttatcaagattcttctttttGTCCCC-CTCTTTGCTAAAA-GCGGGGGACACTAATTTT-G----TT---C--------CGTCC--------GTCCAGTCAG----T------------CTGTCCGTCCGTCgatagcagaatgttt
gi|7 : gacacattaagtgtttggtcaaatcagtggctattaatgtccaatgtcgataagtgtagaacgctacatttgggtcataacaaccaggaaatagtttataattGTCTTC-TGCTTTGCGAAAA-GCAGGAGACACTAATTTA-G----GT---C--------CGTCC--------ATCT-----G----T------------CCGTCCGTCTGTCcatct
gi|8 : tgatcaaatcccattggccgtcatgtttgataactgttctgtttacaccgccttgcatacagttgggtctgtgaaaggaattttt-----G----T------------TCATATGTCAGTTGTA--TTGTTTTGTTCCCC---AGCGCTAATT-TGGG-TCTGTCCG--T-CTAA---TACCGT--GCAATAACTTTA-------GTTTATAATGGCAAAACACAGGCTAAGTTTGAATTAAGGGGTGGTGACTTTTGTTGTAAGACAGTTGTGCCCCTTTAcatctgtctgtctg
gi|9 : GGGAGACATTGTTTTATGTTCTGT---C--------TGTCC--------ATCT-----G----T------------CTGCCAGTCAATC-CATCCA-TCTG---TCTG---T-TAAAAACT-T------TGTCCA--TACAAATCCT--CCT--AAAAT---GTTCATAAAATGatttttga