lowQualScore : 11111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 11 2 11111111111111111111111111111111 1 111 1 1 1 11 222222 1 1111 1 111 11 1 222222222 111 333333333333 222222 22222222 11 11 1 11111 111111 1 1 44444444444444444 22 1 1 000000000000000000000000000000000000000000000000000000000 4444444444 7777777777777777777777777 1 1 333
lowQualScore : 33 88 6 6 55555555555555555555555555555555 0 6 666 3 6 2 7 6 5 5 7 8 8 11 888888 7 6 6 0 7777 7 111 00 3 1 5 0 666666666 8 444 8 444444444444 333333 8 99999999 8 3 0 33 8 11 6 3 66666 5 1 444444 1 777 8888 4 6 4 4 8 4 0 5 3 3 4 3 0 66666666666666666 8888 77 3 2 2 66 111111111111111111111111111111111111111111111111111111111 9 0 1 5555555555 3333333333333333333333333 66 3 7 4 0 4 555
lowQualScore : .. .. . . ................................ . . ... . . . . . . . . . . .. ...... . . . . .... . ... .. . . . . ......... . ... . ............ ...... . ........ . . . .. . .. . . ..... . . ...... . ... .... . . . . . . . . . . . . . ................. .... .. . . . .. ......................................................... . . . .......... ......................... .. . . . . . ...
lowQualScore : 00 33 7 7 66666666666666666666666666666666 0 0 888 2 0 5 0 0 0 0 7 8 0 00 888888 0 0 0 6 0000 0 777 22 9 7 0 8 777777777 0 000 0 000000000000 000000 0 00000000 0 8 8 88 0 00 6 8 99999 7 4 444444 4 000 5555 0 2 9 0 0 0 3 0 6 3 6 3 2 11111111111111111 6666 55 2 5 3 11 555555555555555555555555555555555555555555555555555555555 6 3 4 3333333333 0000000000000000000000000 99 5 2 0 3 0 000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTCA--AATAAATGTTATAA---AT--AAG-----CTTGTGTAGGGAG----CTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGANCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGNTGTTTATCTTTTAAAGGTTCA-GTCTTTGTCACAG--CAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTTAAATAATAAACACATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGTCGG-GG-AAA-TAATAACAATAAAA-CAGTAT-CAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATTA-TA-------TTATAAGTAGAAAATTGCGGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATAAATCGATAAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------AT-------G--GCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTG-CACCTGCGAGTCT-CTGTGT---TATGTC
Reference ( gi|1 ) : ACAAGTAAGGCAAATGCAGTTGAATGTTTGAGATACTGGCATAATTATATTACGTAACGACTATTATGAACGGGAATGGATTCGTCGTCAACGTAACGTGCGTGTGCGGAAGTGCCGATGCGTTGAGCGTTGTTTATTGATGAATGAGTAAATGTTGATGAAGTGGAATAAACCA--AATAAAT-TTATCAC--GTTGAAG-----GTCACATACG-AG----CTTCGGAAAAA-TAAGTTTAAATTAAAATACCTTTTGCAGTACTTATTCCATGCTTTTTTGCAACATGAGCTCGGAATCCAGATGTTGTCTTTAGCTCTTTTGAACATGATTGACCCACATACAAACACAGTTGTTTATCTTTTAAAGGTTCA-GTCTTTGTCACAG--CAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAAAAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTGAATTCACGGCCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTTTAGG---TATAA-TTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTAATGTCACTTCACTCCACAATTGTCATATGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTAAAATAATAAACACATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGCCAG-GG-AAA-TAATAACAATCAAA-CAGTAT-CAAAACCC-GTTCATCAATATATTCTGTTTATATACCACAACAATATAATTA-TA---T---TTATAAGTAGAAAATTGCGGAAA--GCCGTCGCCACGTACACCAATATTATTGTTTAAACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATTAATCGATAAATCAACAATTTATTAAACATGCAAGGAAACC-------AG-------AT-------G--GCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGAGCTATCGCGAGAAGCACCTG-CACTTGCGAGTCT-CTGTGT--CTATGTCC
gi|10 : AATAATTCACTGATAAAT-CTATCATTAATTGAAAAGCATGTTATAAATA-AGTCTGCTTCGGAAAAA-TGAGTTAAAATTGAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCATGGAATCAAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACAT
gi|5 : atatttattctgatatctttactcaaagtggacttttgaaaaatgcagttgtgattgtaaaagattattgactgaactactgctctccacgaaaaaaaggacaaaaaatcattgtttttatcagcagaattaacataA--AATAAATGTTATAA---AT--AAG-----CTTGTGTAGGGAG----CTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTT-GTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGGTGTTTATCTTTTAAAGGTTCA-GTCTTTGTCACAG--CAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATACCACTGTGGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACATATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-TTTCTATTGGGCTAATAGGGTGACATCCCGCGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCTGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGGCAC-TTGTA---AATTT-GAA--------A---ATCTT------A-C-GTAAACAGGGA--------TGTCAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCAATGCTACAGAATA-AAAAAAA--TAAGCTCGCCACCTCTGAATTATGTTAAATGATAAACACATGATAT--AAAAAG-CA-CAGTAATTAAAT
gi|2 : aattgactggacttattcactgataaatctatcattaatcgaaaagcatgttatA--AATAAATGTTATAA---AT--AAG-----CTTGTGTAGGGAG----CTTCAGAAAAA-TGAGTTTAAATTA-----CCTTTTGCGGTACGTATTCCATGCTTTTTTGTAACATGACCACGGAATCCAGATATTGTCTTTAGCTCTTTTGTACATGATGGACACACATACAAACACAGTTGTTTATCTTTTAAAGGTTCA-GTCTTTGTCACAG--CAATGTCCTGGTCATTATTTTCAAAATCCATATA------TTCTCCCAAAAATTAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTTCCATTTTAAATTCACAACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGGTAATAT----GACTCCAAACTATAGG---TACAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTAACACATGACAC-TGGTA---AATTT-GAAAATGATTTA---ATCTT------ACC-GTAAACAGGGA--------T-TTAATGAGTAT-TCGGTGACTAAATTGCGTCATACATTAAACAG----AAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-TAAAAAA--TACGCTCGTCACTTCTGAATTATGT
gi|4 : atatttttttcattatcattataattagtatgttgaatgatgcatgtttaatttatctgctgggctaccgctctccacaaaaaaattaaaaaacattgtttttatcagctgaattaacataaattaattcactgataaatctgtcattaatcgaaaagcatgttatG-AG----CTTCAGAAAAAATGAGTTTAAATTAAATTACCTTTTGTAGTATTTATTCCATGCTTTTTTGTAACATGACCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGATGTTTATCTTTTAAAC-TTTA-GTCTTTGTCATAG--CAATTTGCTGGTCATTACTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCCAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCTCAAATTTATTTTGTTTAAAAGCAGGTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCGAACAGGGTGACATCTCGTGTATTGAGGATGGCAGTTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGGCTTTCGGAATGCATGTTCAATACACAGAGTGTCACTTCACTCCAC-AGTTGTCATCTGACACTTGGTACTGACTTTCGGA--------ATGCATGTTCATGGCACTGGTAAATTTGAAAATCTTACCGTAAACAGGGATGTTAATGAGTA--TT-CATCATACATTAAACAGTGtctgtatatataccacaacaatataattataagtagagaattgtggtaattgctgtcgccacgtaaaccaatattattgtttacacagttgcaggggcgcgcaactacaaaaccgcgtcatctggttccctaataaatcgggaaataaat
gi|11 : taattgataaaagatagttgattttatctgctagactcccgctctccacaaaaaatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttataaataagcttgtgtaggAGTTTCATGTCTTTGTCACAGTTCAATGTGtaa
gi|3 : atatctatgaattgacacatgacactggtaagtttgaaaatcttaccgtaaacagggatgttaatgagtattcagtgactggattgtatca-GTCTTTGTCAGAG--CAATGTGCTGGTCATTATTTGCATAATCCGTATACCGGTATTCTCCCAATAATAAGTCTAAATTTATATCACTATCGCCCCATGATAAGAACTCACTTGCAATTTTAAATTCACAACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATATATATGACTCTAAACTATAGG---TATAA-CTTTTATTTGGCTAATAGGGTGACATTCCGTGTTATGAGGAGGGCAATTCTGTGTATTCAGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGATTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCCGTGACTAAATTGCATCATTCATTGAACAGTGACAAATATATGAAATTGAACTCTCTCTCGTCGCTACAGAACA-AAAAAAA--TACACTTGTCACCTCTGAATTATGTTAAATAATAAACACGTG--ATAAAACAAA-CA-CAGTAATTAAATCACTGAGT------TGGC---A----ACAGT-TTGAGGTCGG-TG-AAA-TAATAACAATAAAA-CAGTAT-CAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATTATTA---T---TAGT-AGTAGAAAATTGTTGAAATTGCCGTCGCCACGTAAACAAATATTATTGTTTACACAGTTGCAGG--TGCG--------------CACAACTACAATATTG--------------CG-----------TCGTCTGGTTCCCTAATAAATCATTAAATCAACAATTTATTGAACG-GCGAGGAAACCATATCAAAT-------AT-------G--GCAGAGATCACGGTCACGTGATTGAGAACAAAAGGTGTTTATGTGCTCTCGCGAGAAGCACCTG-CATCTGCGAGTCTCCCATAT---TATGTCgaactctcccatcgctacagaacagaaaaaaatacgctcgtcatctctgaattatgttaaataataaacacatgatataaaaaaaaccacagtaattaaatcaccgtgtttgcaacagtgtgaggtcggggaaaattatcacaataaaacagtatcaatacaatatattttatt
gi|14 : AATTTATATCACTATCGTCCCATAATAAGAAATCACTTGCCATTTTAAATATACGACCTAATTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCTGACTATAGGTATTATAA-CTTTTATTGGGCTAGTATGATGACATTCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCA-AATTt
gi|21 : ATCACTATCATCCAATGATAAGAAATCAATTGCCATTTTAAATTCACGACTTTTTTGTAGCAC
gi|6 : cACTATAGG---TATAAACTTTTATTGGGCTAATAGGGTGACATCCCATG-----AGGATTGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACAC--AGTG---------TCTATGAATTGACACATAATAca
gi|6 : GCAA--CTGTGTAAACAATAATATTAGTTTATTCCACAATTTTCaacacgatataaaaacacagtaattaaatcaccgagatggcaacagtgtgaggtcggggaaataataacaataaaacagtatttaaacccgttcatccatattttatgtatatataccacaacaatttaattataatttaaattataagtagaaaattgtggaataaactaatattattgtttacacagttgcaggtgcgcgcaactacaccgcatcgtctagttccctaattaattgataaatcaacaatttattaaacggccacgaaaccagatcaaatatggcagagatcacggtcgcgtgaatgagaacaataggtgtttacgtactctcgcgagaaccatctacacctgcgagtctttgtattatgtctct
gi|11 : actataggtataaacttttattgggctaatagggtgacatcccatgaggattgcaattctgtgtattcggtgatgtcacttcactccacagttgtcatctgacacttggtactgactttcggaatgcatgttcaatacacagtgtctatgaattgacacataataaacacgatataaaaacacagtaattaaatcaccgagatggcaacagtgtgaggtcggggaaataataacaataaaacagtatttaaacccgttcatccatattttatgtatatataccacaacaatttaattataatttaaattataagtaTA---------TCTATGAATTGACACATGACAC-TGGTA---AGTTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTGGATTGTATCACACATTGAACTGTGACAAAGACATGAAACTGAA--CTCTCCCATCGCTACAGAACAGAAAAAAA--TACGCTCGTCATCTCTGAATTATGTTAAATAATAAACACATGATATAAAAAAAACCA-CAGTAATTAAATCACCGTGT------TTGC---A----ACAGT-GTGAGGTCGG-GGAAAA-TTATCACAATAAAA-CAGTAT-CAATA----------CAATATATTTTATTaggtgcgcgcaactacaccgcatcgtctagttccctaattaattgataaatcaacaatttattaaacggccacgaaaccagatcaaatatggcagagatcacggtcgcgtgaatgagaacaataggtgtttacgtactctcgcgagaaccatctacacctgcgagtctttgtattatgtctct
gi|7 : aGCTACAGAACA-AAAAAAAAATACGCTCGTCACCTCTGAATTATGTTAAATAATTAACACATGATATAAAAAAA--CA-CAGTAATTAAATCACTGCAT------TGGC---A----ACAGT-GTCAGGTCGG-GG-AAA-TAATAACAAT-AAA-CAGTAT-CAAAAGCC-GTTCATCAAAATATTCTGTATATATACCACAACAATATAATTA-AA---A---TTATAAGAAGAAAATTGCGGAAATTGCCGTCGCAACGTAAACCAATATTATTGTTTACACAGTTACAGG--TGCG--------------C--------------GCAACTACAATACCACA-----------TCATCTGGTTCTCTAATAAATTGATAAATCAACAATTTATTAAACA-GCCAGGAAACC-------AGATCAAATAT-------G--GCGGAGATCACGGTCACGTGATTGAGAATAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTG-CACCTGCGAGTCT-CTGTAT---TATGT
gi|6 : tCTATGAATT--GACACATAATAAACAC--GATATAAAAA----CA-CAGTAATTAAATCACCGAGA------TGGC---A----ACAGT-GTGAGGTCGG-GG-AAA-TAATAACAATAAAA-CAGTAT-TTAAACCC-GTTCATCCATATTTTATGTATATATACCACAACAATTTAATTA-TAATTTAAATTATAAGTAGAAAATTGTGGAA---------------TAAACTAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CAACTACACCGCATCGTCTAGTTCCCTAATTAATTGATAAATCAACAATTTATTAAACG-GCCACGAAACC-------AG-------ATCAAATATG--GCAGAGATCACGGTCGCGTGAATGAGAACAATAGGTGTTTACGTACTCTCGCGAGAACCATCTA-CACCTGCGAGTCT-TTGTAT---TATGTC
gi|18 : actataggtataaacttttattgggctaatagggtgacatcccatgaggattgcaattctgtgtattcggtgatgtcacttcactccacagttgtcatctgacacttggtactgactttcggaatgcatgttcaatacacagtgtGATATAAAC-----CA-CAGTAATTAAATCATTGATTCAAACATAAC---ATAAAGCAATAGTGA----AG-GG-AAA-TAATAATAATAAAAGCAATTT-C--ATCCCTGTTCATCAATATATTtct
gi|12 : AA-CATCAGTAATTACA-CACTGATT------CGGTTGTA----ACA-C-ATGACACCAGTGG-A---TGGAAACAGCCAAA--ATTATACCATACCT-GCCCATCAATATATTCTG--------CCATAACAATATAAT-------------------TAGAA----GCGTAAA------------------CCAATATTTTTGTTAAAACCATTGCAGG--TGTG--------------C--------------A--------------CA-----------ACGTC
gi|9 : cTAATTAAATCACTGAGT------TTGC---A----ACAGT-GTGAGGTCAG-GGAAAA-TTATCACATTAAAA-CAGTAT-CAATA----------CAATATATTTTATTattttcgcggagatcacgttcacgtgattgagaacaactggtgtttcagtgctactgatagaagcacctgatgctgcgagtctttgtattatagaccactggtttttgttttctaatattt
gi|8 : T------TTGC---A----ACAGT-GCGAGGTCGG-GG-AAAATTATTACAATAAAA-CAGTAT-CAATA----------CAATATATTTTATTcttttatcttttattcactcagttcattaaaacatgaaatcaaaacccgttcatcaatatattctgtatatataccacaacaatataattataagtagaaaattgcagaaattgccgtcgccacgtaaaccaatattattgtttacacagttgcaggtgcgcgcaactacaataccgcatcatctggttcccttataaattgataaatcaggaaaccagatcaaatatggtgcagatcacggtcacgtaattgagaacaataggtgttaacgcgattccgcgaggagcaccttgaccttcaagtctctgtgtattgag
gi|15 : cacaataaaacagtatcaatacaatatattttattctGC---A----ATAGT-G-GAA--C----G-AAA-TAATGATAA--AAA--ATTAC-CAAAGCCT-GTTTATCAGTATATTCTG--------CCATGACAGTATAA-------------TTATAAGCAGAAGAT-------A--GCCGCCGCCA-------CAA---TATTGTTTACACCGTTGCAGGTTTGTA--------------T--------------G--------------CG-----------Tcttttatcttttattcactcagttcaaaacccgttcatcaatatattttgtatatataccacaacaatataattgaaattataagtagaaaattgtggaaattgccgtcgcaatgtaaaccaattttattgtttacacagttgcaggtgcccgcgtagtattgttcccaaataaatcgattaatcaacaatttattaaacggccaggaaaccagatcaaataggcggagatcacggtcacgtgattgagaacaataggtgtttacgagttattgcgagaagcacctgcacctgcgagtctctgcgtctatgt
gi|19 : ctataaacggcatcgattaaatagctgatacgattgtaacataaaC---A----ACAGT-GTGAGGTCGG-GG-AAA-TAATAACAATAAAA-CATTAT-CAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATTA-Tatacattacatgtgtgtgcat
gi|8 : t-CAGT-T-CAAAACCC-GTTCATCAATATATTTTGTATATATACCACAACAATATAATTG-AA---A---TTATAAGTAGAAAATTGTGGAAATTGCCGTCGCAATGTAAACCAATTTTATTGTTTACACAGTTGCAGG--TGCC--------------C--------------G--------------CG-----------TAGTATTGTTCCCAAATAAATCGATTAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------ATCAAATA-G--GCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGAGTTATTGCGAGAAGCACCTG-CACCTGCGAGTCT-CTGCGT--CTATGT
gi|9 : cacaataaaacagtatcaatacaatatattttattcttttgcaacagtgcgaggtcggggaaaattattacaataaaacagtatcaatacaatatattttattcttttatcttttattcactAT-CAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAA-------------TTATAAGTAGAAAATTGCAGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCGCGCAACTACAATACC--------------G--------------CA-----------TCATCTGGTTCCCTTATAAATTGATAAATC--------------------AGGAAACC-------AGATCAAATAT-------G--GTGCAGATCACGGTCACGTAATTGAGAACAATAGGTGTTAACGCGATTCCGCGAGGAGCACCTT-GACCTTCAAGTCT-CTGTGT--
gi|2 : taattaaatcactgagtttgcaacagtgtgaggtcagggaaaattatcacattaaaacagtatcaatacaatatattttattcttttatcttttattcactcagttcattaaaacatgaaTATGTTCTGTATATATACCACAACAATATAATTA-TA------------AGTAGAGAATTGTGGTAATTGCTGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--GGCGCGCAACTACAAAACC--------------G--------------CG-----------TCATCTGGTTCCCTAATAAATCGGGAAATAAAattgag
gi|22 : atatttttttcattatcattataattagtatgttgaatgatgcatgtttaatttatctgctgggctaccgctctccacaaaaaaattaaaaaacattgtttttatcagctgaattaacataaattaattcactgataaatctgtcattaatcgaaaagcatgttataaataaatgttataaataagcttgtgtagggagcttcagaaaaatgagtttaaattaccttttgcggtacgtattccatgcttttttgtaacatgaccacggaatccagatattgtctttagctcttttgtacatgatggacacacatacaaacacagttgtttatcttttaaaggttcagtctttgtcacagcaatgtcctggtcattattttcaaaatccatatattctcccaaaaattagtctaaatttatatcactatcgtcccatgataagaaatcactttccattttaaattcacaacctatttgtagcacaaatttattttgtttaaaagcaggtaatatgactccaaactataggtacaacttttattgggctaatagggtgacatcccgtgtattgaggatggcaattctgtgtattcggtgatgtcacttcactccacagttgtcatctgacacttggtactgactttcggaatgcatgttcaatacacagagtgtctatgaattaacacatgacactggtaaatttgaaaatgatttaatcttaccgtaaacagggatttaatgagtattcggtgactaaattgcgtcatacattaaacagaaagacatgaaattgaactctctcatcgctacagaacataaaaaatacgctcgtcacttctgaatTGCCATAACACTATAAT-------------TATAAG--GAAAA-----GACA--GCCATCACCATGTAAACCTATATTGTTGTTt
gi|16 : tcAACAATATAATTA-TA------------AGTAGAAGAT-------A--ACCATCGCCACGTACAGCAATATTATTGATTGCGCCGTTGATGG--TGCG--------------C--------------A--------------C
gi|9 : gtTCTGGTTTCCTGATTTATC-----------AATTTAT---------AAGGGAACC-------AG-------AT-------GATGCGGaacaccactctcgcagagatcaaggtcatctgattgaaaacaataggtatttacatgttctcacgagaagcacctgcttgtgtgagtctgtatattgttatgtcac
gi|16 : taattaaatcactgagtttgcaacagtgtgaggtcagggaaaattatcacattaaaacagtatcaatacaatatattttattcttttatcttttattcactcagttcattaaaacatgaaatcaaaacccgttcatcaatatattctgtatatataccacaacaatataattataagtagaaaattgcagaaattgccgtcgccacgtaaaccaatattattgtttacacagttgcaggtgcgcgcaactacaata--GCAGAGATCAAGGTCATCTGATTGAAAACAATAGGTATTTACATGTTCTCACGAGAAGCACCTG-CTTGTGTGAGTCT-GTATATTGTTATGTCtcaaatatggtgcagatcacggtcacgtaattgagaacaataggtgttaacgcgattccgcgaggagcaccttgaccttcaagtctctgtgtattgag
gi|12 : gtaacaatataattataagtagaagataaccatcgccacgtacagcaatattattgattgcgccgttgatggtgcgcacaacaccactctc--GCGGAGATCACGTTCACGTGATTGAGAACAACTGGTGTTTCAGTGCTACTGATAGAAGCACCTGATGC-TGCGAGTCT-TTGTAT---TATac
gi|13 : caacatcagtaattacacactgattcggttgtaacacatgacaccagtggatggaaacagccaaaattataccatacctgcccatcaatatattctgccataacaatataattagaagcgtaaaccaatatttttgttaaaaccattgcaggtgtgcacaacgtcattttcCAGAAATCACAGTCACAGGATTCAGAACAATTGGTGTTTACGTATTCTCGCGAGAAGCACCTG-CTGCTGCGAGTCT-TTGTagaccactggtttttgttttctaatattt
gi|24 : acaattacctattcaacagtatcagtgacttaataacagcacaactctaTATCGCGAGAAGCACCTG-CACCAGCCAGTCT-CTGTGagataagtcactgacagtatttacttttttaaaatccattaaatgtcccaaattttcaccaatatacttattgcagtgctgatacaggttaaaaacaatacaaaaaatgtcaaa
gi|23 : TCGCGAGAAGCACTTG-CACCTTCAAG-----TGTGTA-TTATGTC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TATTAGGTAACGATTATTTGGTTTGATTGACGTCGACGTCAAATTCGTTAGCGGACGTGATCATGTGATAAGCGTTTTTAATTGAAGTTGAATAAATAATGAAGAAGTTTGATAAACACCA
Unaligned ( gi|20 ): AATCATCAGCAGAAGTGGCTGCTGCATCATTTGAATACCGGTGGTCTTGTTTATGTTTATACATGCATATACGTTACATGTGTATGCGT
Alignments
lowQualScore : 11 222222 1111 111 222222222 111 222222222222 111111 22222222 11 11 111111 333333333333333 2222222222 888888888888888888888888888888888888888888888888888888888 7777777777777777777777777
lowQualScore : 555 8 11 3 5 8 0 0 1 1 2 333333 4444 000 5 222222222 6 111 6 666666666666 999999 6 44444444 6 1 11 6 99 5 5 55 22 00 5 222222 0 666 7777 3 0 3 3 3 3 3 3 0 555 3 3 333333333333333 0000000000 55 777777777777777777777777777777777777777777777777777777777 0 6 3333333333333333333333333 0 3 666 8
lowQualScore : ... . .. . . . . . . . . ...... .... ... . ......... . ... . ............ ...... . ........ . . .. . .. . . .. .. .. . ...... . ... .... . . . . . . . . . ... . . ............... .......... .. ......................................................... . . ......................... . . ... .
lowQualScore : 000 0 00 8 0 0 8 8 0 0 5 000000 2222 000 7 999999999 7 777 7 888888888888 222222 7 22222222 7 7 00 7 22 7 7 99 99 00 0 888888 1 444 7777 6 4 6 6 6 6 3 1 2 444 5 1 999999999999999 3333333333 55 000000000000000000000000000000000000000000000000000000000 7 7 0000000000000000000000000 7 6 444 9
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAANCGAAATAAATGTTATAA-AT--AAGCTTGCGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGNTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-TA-------TT-ATAAGTAGAAAATTGCGGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATAAATCGATAAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------AT-------GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TGT-TATGTC
Reference ( family-5500 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATTCAAATAAATGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGANCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGNTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-TA-------TT-ATAAGTAGAAAATTGCGGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATAAATCGATAAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------AT-------GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TGT-TATGTC
gi|1 : AATAAACCAAATAAAT-TTATCACGTTGAAGGTCACATACG-AGCTTCGGAAAAA-TAAGTTTAAATTAAAATACCTTTTGCAGTACTTATTCCATGCTTTTTTGCAACATGAGCTCGGAATCCAGATGTTGTCTTTAGCTCTTTTGAACATGATTGACCCACATACAAACACAGTTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAAAAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTGAATTCACGGCCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTTTAGG---TATAA-TTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTAATGTCACTTCACTCCACAATTGTCATATGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTAAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGCC-AG-GG-AAA-TAATAACAAT-CAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTTTATATACCACAACAATATAATT-A-TA-------TTTATAAGTAGAAAATTGCGGAAA--GCCGTCGCCACGTACACCAATATTATTGTTTAAACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATTAATCGATAAATCAACAATTTATTAAACATGCAAGGAAACC-------AG-------AT-------GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGAGCTATCGCGAGAAGCACCTGCACTTGCGAGTCT-CTG---TGTCTATGTC
gi|10 : acaagtaaggcaaatgcagttgaatgtttgagatactggcataattatattacgtaacgactattatgaacgggaatggattcgtcgtcaacgtaacgtgcgtgtgcggaagtgccgatgcgttgagcgttgtttattgatgaatgagtaaatgttgatgaagtggTAATTGAAAAGCATGTTATAA-AT--AAGTCTG---------CTTCGGAAAAA-TGAGTTAAAATTGAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCATGGAATCAAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATc
gi|11 : atatttattctgatatctttactcaaagtggacttttgaaaaatgcagttgtgattgtaaaagattattgactgaactactgctctccacgaaaaaaaggacaaaaaatcattgtttttatcagcagaattaacataaataattcactgataaatctatcatTA---------TCTATGAATTGACACATGACAC-TGGTA---AGTTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTGGATTGTATCACACATTGAACTGTGACAAAGACATGAAACTGAA--CTCTCCCATCGCTACAGAACAGAAAAAAA--TACGCTCGTCATCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAACCA-CAGTAATTAAATCACCGTGT------TTGC---A----ACAGT-GTGAGGTC-GG-GGAAAA-TTATCACAAT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|12 : aAA-CATCAGTAATTACA-CACTGATT------CGGTTGTA----ACA-C-ATGACACC-AGTGG-A---TGGAAACAGCCAAAA-TTAT---ACCATA-CCT-GCCCATCAATATATTCTG--------CCATAACAAT---------------------ATAATTAGAAG----------------------CGTAAACCAATATTTTTGTTAAAACCATTGCAGG--TGTG--------------C--------------A--------------CA-----------ACGTCt
gi|12 : cGCGGAGATCACGTTCACGTGATTGAGAACAACTGGTGTTTCAGTGCTACTGATAGAAGCACCTGATGCTGCGAGTCT-TTG---TAT-TATattttcgcggagatcacgttcacgtgattgagaacaactggtgtttcagtgctactgatagaagcacctgatgctgcgagtctttgtattatagaccactggtttttgttttctaatattt
gi|13 : caacatcagtaattacacactgattcggttgtaacacatgacaccagtggatggaaacagccaaaattataccatacctgcccatcaatatattctgccataacaatataattagaagcgtaaaccaatatttttgttaaaaccattgcaggtgtgcacaacgtcattttcCAGAAATCACAGTCACAGGATTCAGAACAATTGGTGTTTACGTATTCTCGCGAGAAGCACCTGCTGCTGCGAGTCT-TTG---Tagaccactggtttttgttttctaatattt
gi|14 : acaattacctattcaacagtatcagtgacttaataacagcacaactctaAATTTATATCACTATCGTCCCATAATAAGAAATCACTTGCCATTTTAAATATACGACCTAATTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCTGACTATAGGTATTATAA-CTTTTATTGGGCTAGTATGATGACATTCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCAagataagtcactgacagtatttacttttttaaaatccattaaatgtcccaaattttcaccaatatacttattgcagtgctgatacaggttaaaaacaatacaaaaaatgtcaaa
gi|15 : GC---A----ATAGT-G-GAA--C-G-----AAA-TAATGA---T-AAAA-AATT---ACCAAAGCCT-GTTTATCAGTATATTCTG--------CCATGACAGTATA-------A-------TT-ATAAGCAGAAGAT-----A----GCCGCCGCCAC--AA--------TATTGTTTACACCGTTGCAGGTTTGTA--------------T--------------G--------------CG-----------Taatt
gi|16 : ctataaacggcatcgattaaatagctgatacgattgtaacataaaAACAATATAATT-A-TA-------------AGTAGAAGAT------AA---CCATCGCCACGTACAGCAATATTATTGATTGCGCCGTTGATGG--TGCG--------------C--------------A--------------Catacattacatgtgtgtgcat
gi|16 : gtGCAGAGATCAAGGTCATCTGATTGAAAACAATAGGTATTTACATGTTCTCACGAGAAGCACCTGCTTGTGTGAGTCT-GTATATTGT-TATGTCaacaccactctcgcagagatcaaggtcatctgattgaaaacaataggtatttacatgttctcacgagaagcacctgcttgtgtgagtctgtatattgttatgtcac
gi|18 : gtaacaatataattataagtagaagataaccatcgccacgtacagcaatattattgattgcgccgttgatggtgcgcacaacaccactctcGATATAAAC-----CA-CAGTAATTAAATCATTGATTCAAACATAAC---ATAAAGCAATAGTGAAG------GG-AAA-TAATAATAAT-AAAAGCAAT---TTC--ATCCCTGTTCATCAATATATTac
gi|19 : C---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CATT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-T
gi|2 : tAAATAAATGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCAGAAAAA-TGAGTTTAA-----ATTACCTTTTGCGGTACGTATTCCATGCTTTTTTGTAACATGACCACGGAATCCAGATATTGTCTTTAGCTCTTTTGTACATGATGGACACACATACAAACACAGTTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTCCTGGTCATTATTTTCAAAATCCATATA------TTCTCCCAAAAATTAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTTCCATTTTAAATTCACAACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGGTAATAT----GACTCCAAACTATAGG---TACAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTAACACATGACAC-TGGTA---AATTT-GAAAATGATTTA---ATCTT------ACC-GTAAACAGGGA--------T-TTAATGAGTAT-TCGGTGACTAAATTGCGTCATACATTAAACAG----AAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-TAAAAAA--TACGCTCGTCACTTCTGAATTATGTTCTGTATATATACCACAACAATATAA
gi|2 : atatttttttcattatcattataattagtatgttgaatgatgcatgtttaatttatctgctgggctaccgctctccacaaaaaaattaaaaaacattgtttttatcagctgaattaacataaattaattcactgataaatctgtcattaatcgaaaagcatgttatTATGTTCTGTATATATACCACAACAATATAATT-A--------------TAAGTAGAGAATTGTGGTAATTGCTGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--GGCGCGCAACTACAAAACC--------------G--------------CG-----------TCATCTGGTTCCCTAATAAATCGGGAAATAAAttataagtagagaattgtggtaattgctgtcgccacgtaaaccaatattattgtttacacagttgcaggggcgcgcaactacaaaaccgcgtcatctggttccctaataaatcgggaaataaat
gi|21 : atatttttttcattatcattataattagtatgttgaatgatgcatgtttaatttatctgctgggctaccgctctccacaaaaaaattaaaaaacattgtttttatcagctgaattaacataaattaattcactgataaatctgtcattaatcgaaaagcatgttataaataaatgttataaataagcttgtgtagggagcttcagaaaaatgagtttaaattaccttttgcggtacgtattccatgcttttttgtaacatgaccacggaatccagatattgtctttagctcttttgtacatgatggacacacatacaaacacagttgtttatcttttaaaggttcagtctttgtcacagcaatgtcctggtcattattttcaaaatccatatattctcccaaaaattagtctaaatttatatcactatcgtcccatgataagaaatcactttccattttaaattcacaacctatttgtagcacaaatttattttgtttaaaagcaggtaatatgactccaaactataggtacaacttttattgggctaatagggtgacatcccgtgtattgaggatggcaattctgtgtattcggtgatgtcacttcactccacagttgtcatctgacacttggtactgactttcggaatgcatgttcaatacacagagtgtctatgaattaacacatgacactggtaaatttgaaaatgatttaatcttaccgtaaacagggatttaatgagtattcggtgactaaattgcgtcatacattaaacagaaagacatgaaattgaactctctcatcgctacagaacataaaaaatacgctcgtcacttctgaatATCACTATCATCCAATGATAAGAAATCAATTGCCATTTTAAATTCACGACTTTTTTGTAGCACt
gi|22 : cTGCCATAACACTATAATT-A-TA-------------AG--GAAAA-----GACA--GCCATCACCATGTAAACCTATATTGTTGTTca
gi|23 : tcTTTCGCGAGAAGCACTTGCACCTTCAAG--T-GTG---TAT-TATGTC
gi|24 : TCGCGAGAAGCACCTGCACCAGCCAGTCT-CTG---TGtct
gi|3 : taGTCTTTGTCAGAGCAATGTGCTGGTCATTATTTGCATAATCCGTATACCGGTATTCTCCCAATAATAAGTCTAAATTTATATCACTATCGCCCCATGATAAGAACTCACTTGCAATTTTAAATTCACAACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATATATATGACTCTAAACTATAGG---TATAA-CTTTTATTTGGCTAATAGGGTGACATTCCGTGTTATGAGGAGGGCAATTCTGTGTATTCAGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGATTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCCGTGACTAAATTGCATCATTCATTGAACAGTGACAAATATATGAAATTGAACTCTCTCTCGTCGCTACAGAACA-AAAAAAA--TACACTTGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-GTG--ATAAAACAAA-CA-CAGTAATTAAATCACTGAGT------TGGC---A----ACAGT-TTGAGGTC-GG-TG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-ATTA-------TT-AGTAGTAGAAAATTGTTGAAATTGCCGTCGCCACGTAAACAAATATTATTGTTTACACAGTTGCAGG--TGCG--------------CACAACTACAATATTG--------------CG-----------TCGTCTGGTTCCCTAATAAATCATTAAATCAACAATTTATTGAACG-GCGAGGAAACCATATCAAAT-------AT-------GGCAGAGATCACGGTCACGTGATTGAGAACAAAAGGTGTTTATGTGCTCTCGCGAGAAGCACCTGCATCTGCGAGTCTCCCA---TAT-TATGTC
gi|4 : TGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCAGAAAAAATGAGTTTAAATTAAATTACCTTTTGTAGTATTTATTCCATGCTTTTTTGTAACATGACCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGATGTTTATCTTTTAAAC-TTTAGTCTTTGTCATAGCAATTTGCTGGTCATTACTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCCAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCTCAAATTTATTTTGTTTAAAAGCAGGTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCGAACAGGGTGACATCTCGTGTATTGAGGATGGCAGTTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGGCTTTCGGAATGCATGTTCAATACACAGAGTGTCACTTCACTCCAC-AGTTGTCATCTGACACTTGGTACTGACTTTCGGA--------ATGCATGTTCATGGCACTGGTAAATTTGAAAATCTTACCGTAAACAGGGATGTTAATGAGTA--TT-CATCATACATTAAACAGTGt
gi|5 : taattgataaaagatagttgattttatctgctagactcccgctctccacaaaaaatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATAAATGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTT-TGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGGTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATACCACTGTGGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACATATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-TTTCTATTGGGCTAATAGGGTGACATCCCGCGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCTGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGGCAC-TTGTA---AATTT-GAA--------A---ATCTT------A-C-GTAAACAGGGA--------TGTCAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCAATGCTACAGAATA-AAAAAAA--TAAGCTCGCCACCTCTGAATTATGTTAAATG-ATA-AACAC-ATGATAT--AAAAAG-CA-CAGTAATTAAATtaa
gi|6 : aattgactggacttattcactgataaatctatcattaatcgaaaagcatgttatACTATAGG---TATAAACTTTTATTGGGCTAATAGGGTGACATCCCATG-----AGGATTGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACAC--AGTG---------TCTATGAATTGACACATAATA
gi|6 : CTATGAATT--GACACATA-ATA-AACAC---GATATAAAAA----CA-CAGTAATTAAATCACCGAGA------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATTTAAACCC-GTTCATCCATATTTTATGTATATATACCACAACAATTTAATT-A-TAATTTAAATT-ATAAGTAGAAAATTGTGGAA---------------TAAACTAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CAACTACACCGCATCGTCTAGTTCCCTAATTAATTGATAAATCAACAATTTATTAAACG-GCCACGAAACC-------AG-------ATCAAATATGGCAGAGATCACGGTCGCGTGAATGAGAACAATAGGTGTTTACGTACTCTCGCGAGAACCATCTACACCTGCGAGTCT-TTG---TAT-TATGTCaacacgatataaaaacacagtaattaaatcaccgagatggcaacagtgtgaggtcggggaaataataacaataaaacagtatttaaacccgttcatccatattttatgtatatataccacaacaatttaattataatttaaattataagtagaaaattgtggaataaactaatattattgtttacacagttgcaggtgcgcgcaactacaccgcatcgtctagttccctaattaattgataaatcaacaatttattaaacggccacgaaaccagatcaaatatggcagagatcacggtcgcgtgaatgagaacaataggtgtttacgtactctcgcgagaaccatctacacctgcgagtctttgtattatgtctct
gi|7 : actataggtataaacttttattgggctaatagggtgacatcccatgaggattgcaattctgtgtattcggtgatgtcacttcactccacagttgtcatctgacacttggtactgactttcggaatgcatgttcaatacacagtgtGCTACAGAACA-AAAAAAAAATACGCTCGTCACCTCTGAATTATGTTAAATA-ATT-AACAC-ATGATATAAAAAAA--CA-CAGTAATTAAATCACTGCAT------TGGC---A----ACAGT-GTCAGGTC-GG-GG-AAA-TAATAACAAT--AAA-CAGT---ATCAAAAGCC-GTTCATCAAAATATTCTGTATATATACCACAACAATATAATTAA-AA-------TT-ATAAGAAGAAAATTGCGGAAATTGCCGTCGCAACGTAAACCAATATTATTGTTTACACAGTTACAGG--TGCG--------------C--------------GCAACTACAATACCACA-----------TCATCTGGTTCTCTAATAAATTGATAAATCAACAATTTATTAAACA-GCCAGGAAACC-------AGATCAAATAT-------GGCGGAGATCACGGTCACGTGATTGAGAATAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TAT-TATGTtct
gi|8 : tT------TTGC---A----ACAGT-GCGAGGTC-GG-GG-AAAATTATTACAAT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|8 : cacaataaaacagtatcaatacaatatattttattct-CAGT----TCAAAACCC-GTTCATCAATATATTTTGTATATATACCACAACAATATAATTGA-AA-------TT-ATAAGTAGAAAATTGTGGAAATTGCCGTCGCAATGTAAACCAATTTTATTGTTTACACAGTTGCAGG--TGCC--------------C--------------G--------------CG-----------TAGTATTGTTCCCAAATAAATCGATTAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------ATCAAATA-GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGAGTTATTGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---CGTCTATGTtcttttatcttttattcactcagttcaaaacccgttcatcaatatattttgtatatataccacaacaatataattgaaattataagtagaaaattgtggaaattgccgtcgcaatgtaaaccaattttattgtttacacagttgcaggtgcccgcgtagtattgttcccaaataaatcgattaatcaacaatttattaaacggccaggaaaccagatcaaataggcggagatcacggtcacgtgattgagaacaataggtgtttacgagttattgcgagaagcacctgcacctgcgagtctctgcgtctatgt
gi|9 : cacaataaaacagtatcaatacaatatattttattcttttgcaacagtgcgaggtcggggaaaattattacaataaaacagtatcaatacaatatattttattcttttatcttttattcactTAATTAAATCACTGAGT------TTGC---A----ACAGT-GTGAGGTCAGG-GA-AAA-TTATCACATT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|9 : CATT-AAAA-CA-TGAAATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A--------------TAAGTAGAAAATTGCAGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCGCGCAACTACAATACC--------------G--------------CA-----------TCATCTGGTTCCCTTATAAATTGATAAAT--------------------CAGGAAACC-------AGATCAAATAT-------GGTGCAGATCACGGTCACGTAATTGAGAACAATAGGTGTTAACGCGATTCCGCGAGGAGCACCTTGACCTTCAAGTCT-CTG---TGT-tcttttatcttttattcactcagttcattaaaacatgaaatcaaaacccgttcatcaatatattctgtatatataccacaacaatataattataagtagaaaattgcagaaattgccgtcgccacgtaaaccaatattattgtttacacagttgcaggtgcgcgcaactacaataccgcatcatctggttcccttataaattgataaatcaggaaaccagatcaaatatggtgcagatcacggtcacgtaattgagaacaataggtgttaacgcgattccgcgaggagcaccttgaccttcaagtctctgtgtattgag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTAGGTAACGATTATTTGGTTTGATTGACGTCGACGTCAAATTCGTTAGCGGACGTGATCATGTGATAAGCGTTTTTAATTGAAGTTGAATAAATAATGAAGAAGTTTGATAAACACCA
Unaligned ( gi|20 ): AATCATCAGCAGAAGTGGCTGCTGCATCATTTGAATACCGGTGGTCTTGTTTATGTTTATACATGCATATACGTTACATGTGTATGCGT
Alignments
lowQualScore : 11 222222 1111 111 222222222 111 222222222222 111111 22222222 11 11 111111 33333333333333 2222222222 888888888888888888888888888888888888888888888888888888888 7777777777777777777777777
lowQualScore : 1 2 8 11 3 5 8 0 0 1 2 333333 4444 000 5 222222222 6 111 6 666666666666 999999 6 44444444 6 1 11 6 99 5 5 55 22 00 5 222222 0 666 7777 3 0 3 3 3 3 3 3 0 555 3 3 33333333333333 0000000000 55 777777777777777777777777777777777777777777777777777777777 0 6 3333333333333333333333333 0 3 666 8
lowQualScore : . . . .. . . . . . . . ...... .... ... . ......... . ... . ............ ...... . ........ . . .. . .. . . .. .. .. . ...... . ... .... . . . . . . . . . ... . . .............. .......... .. ......................................................... . . ......................... . . ... .
lowQualScore : 0 5 0 00 2 0 0 8 8 0 5 000000 2222 000 7 999999999 7 777 7 888888888888 222222 7 22222222 7 7 00 7 22 7 7 99 99 00 0 888888 1 444 7777 6 4 6 6 6 6 3 1 2 444 5 1 99999999999999 3333333333 55 000000000000000000000000000000000000000000000000000000000 7 7 0000000000000000000000000 7 6 444 9
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAANCGAAATAAATGTTATAA-AT--AAGCTTGCGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGNTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-TA-------TTATAAGTAGAAAATTGCGGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATAAATCGATAAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------AT-------GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TGT-TATGTC
Reference ( family-5500 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAANCGAAATAAATGTTATAA-AT--AAGCTTGCGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGNTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-TA-------TTATAAGTAGAAAATTGCGGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATAAATCGATAAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------AT-------GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TGT-TATGTC
gi|1 : AATAAACCAAATAAAT-TTATCACGTTGAAGGTCACATACG-AGCTTCGGAAAAA-TAAGTTTAAATTAAAATACCTTTTGCAGTACTTATTCCATGCTTTTTTGCAACATGAGCTCGGAATCCAGATGTTGTCTTTAGCTCTTTTGAACATGATTGACCCACATACAAACACAGTTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAAAAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTGAATTCACGGCCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTTTAGG---TATAA-TTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTAATGTCACTTCACTCCACAATTGTCATATGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTAAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGCC-AG-GG-AAA-TAATAACAAT-CAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTTTATATACCACAACAATATAATT-A-TAT------TTATAAGTAGAAAATTGCGGAAA--GCCGTCGCCACGTACACCAATATTATTGTTTAAACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATTAATCGATAAATCAACAATTTATTAAACATGCAAGGAAACC-------AG-------AT-------GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGAGCTATCGCGAGAAGCACCTGCACTTGCGAGTCT-CTG---TGTCTATGTC
gi|10 : acaagtaaggcaaatgcagttgaatgtttgagatactggcataattatattacgtaacgactattatgaacgggaatggattcgtcgtcaacgtaacgtgcgtgtgcggaagtgccgatgcgttgagcgttgtttattgatgaatgagtaaatgttgatgaagtggTAATTGAAAAGCATGTTATAA-AT--AAGTCTGC---------TTCGGAAAAA-TGAGTTAAAATTGAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCATGGAATCAAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATc
gi|11 : atatttattctgatatctttactcaaagtggacttttgaaaaatgcagttgtgattgtaaaagattattgactgaactactgctctccacgaaaaaaaggacaaaaaatcattgtttttatcagcagaattaacataaataattcactgataaatctatcatTA---------TCTATGAATTGACACATGACAC-TGGTA---AGTTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTGGATTGTATCACACATTGAACTGTGACAAAGACATGAAACTGAA--CTCTCCCATCGCTACAGAACAGAAAAAAA--TACGCTCGTCATCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAACCA-CAGTAATTAAATCACCGTGT------TTGC---A----ACAGT-GTGAGGTC-GG-GGAAAA-TTATCACAAT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|12 : aAA-CATCAGTAATTACA-CACTGATT------CGGTTGTA----ACA-C-ATGACACC-AGTGG-A---TGGAAACAGCCAAAA-TTAT---ACCATA-CCT-GCCCATCAATATATTCTG--------CCATAACAAT--------------------ATAATTAGAAG----------------------CGTAAACCAATATTTTTGTTAAAACCATTGCAGG--TGTG--------------C--------------A--------------CA-----------ACGTCt
gi|12 : cGCGGAGATCACGTTCACGTGATTGAGAACAACTGGTGTTTCAGTGCTACTGATAGAAGCACCTGATGCTGCGAGTCT-TTG---TAT-TATattttcgcggagatcacgttcacgtgattgagaacaactggtgtttcagtgctactgatagaagcacctgatgctgcgagtctttgtattatagaccactggtttttgttttctaatattt
gi|13 : caacatcagtaattacacactgattcggttgtaacacatgacaccagtggatggaaacagccaaaattataccatacctgcccatcaatatattctgccataacaatataattagaagcgtaaaccaatatttttgttaaaaccattgcaggtgtgcacaacgtcattttcCAGAAATCACAGTCACAGGATTCAGAACAATTGGTGTTTACGTATTCTCGCGAGAAGCACCTGCTGCTGCGAGTCT-TTG---Tagaccactggtttttgttttctaatattt
gi|14 : acaattacctattcaacagtatcagtgacttaataacagcacaactctaAATTTATATCACTATCGTCCCATAATAAGAAATCACTTGCCATTTTAAATATACGACCTAATTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCTGACTATAGGTATTATAA-CTTTTATTGGGCTAGTATGATGACATTCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCAagataagtcactgacagtatttacttttttaaaatccattaaatgtcccaaattttcaccaatatacttattgcagtgctgatacaggttaaaaacaatacaaaaaatgtcaaa
gi|15 : GC---A----ATAGT-G-GAA--C-G-----AAA-TAATGA---T-AAAA-AATT---ACCAAAGCCT-GTTTATCAGTATATTCTG--------CCATGACAGTATA-------A-------TTATAAGCAGAAGAT-----A----GCCGCCGCCAC--AA--------TATTGTTTACACCGTTGCAGGTTTGTA--------------T--------------G--------------CG-----------Taatt
gi|16 : ctataaacggcatcgattaaatagctgatacgattgtaacataaaAACAATATAATT-A-TA------------AGTAGAAGAT------AA---CCATCGCCACGTACAGCAATATTATTGATTGCGCCGTTGATGG--TGCG--------------C--------------A--------------Catacattacatgtgtgtgcat
gi|16 : gtGCAGAGATCAAGGTCATCTGATTGAAAACAATAGGTATTTACATGTTCTCACGAGAAGCACCTGCTTGTGTGAGTCT-GTATATTGT-TATGTCaacaccactctcgcagagatcaaggtcatctgattgaaaacaataggtatttacatgttctcacgagaagcacctgcttgtgtgagtctgtatattgttatgtcac
gi|18 : gtaacaatataattataagtagaagataaccatcgccacgtacagcaatattattgattgcgccgttgatggtgcgcacaacaccactctcGATATAAAC-----CA-CAGTAATTAAATCATTGATTCAAACATAAC---ATAAAGCAATAGTGAAG------GG-AAA-TAATAATAAT-AAAAGCAAT---TTC--ATCCCTGTTCATCAATATATTac
gi|19 : C---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CATT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-T
gi|2 : tAAATAAATGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCAGAAAAA-TGAGTTTAA-----ATTACCTTTTGCGGTACGTATTCCATGCTTTTTTGTAACATGACCACGGAATCCAGATATTGTCTTTAGCTCTTTTGTACATGATGGACACACATACAAACACAGTTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTCCTGGTCATTATTTTCAAAATCCATATA------TTCTCCCAAAAATTAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTTCCATTTTAAATTCACAACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGGTAATAT----GACTCCAAACTATAGG---TACAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTAACACATGACAC-TGGTA---AATTT-GAAAATGATTTA---ATCTT------ACC-GTAAACAGGGA--------T-TTAATGAGTAT-TCGGTGACTAAATTGCGTCATACATTAAACAG----AAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-TAAAAAA--TACGCTCGTCACTTCTGAATTATGTTCTGTATATATACCACAACAATATAA
gi|2 : atatttttttcattatcattataattagtatgttgaatgatgcatgtttaatttatctgctgggctaccgctctccacaaaaaaattaaaaaacattgtttttatcagctgaattaacataaattaattcactgataaatctgtcattaatcgaaaagcatgttatTATGTTCTGTATATATACCACAACAATATAATT-A-------------TAAGTAGAGAATTGTGGTAATTGCTGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--GGCGCGCAACTACAAAACC--------------G--------------CG-----------TCATCTGGTTCCCTAATAAATCGGGAAATAAAttataagtagagaattgtggtaattgctgtcgccacgtaaaccaatattattgtttacacagttgcaggggcgcgcaactacaaaaccgcgtcatctggttccctaataaatcgggaaataaat
gi|21 : atatttttttcattatcattataattagtatgttgaatgatgcatgtttaatttatctgctgggctaccgctctccacaaaaaaattaaaaaacattgtttttatcagctgaattaacataaattaattcactgataaatctgtcattaatcgaaaagcatgttataaataaatgttataaataagcttgtgtagggagcttcagaaaaatgagtttaaattaccttttgcggtacgtattccatgcttttttgtaacatgaccacggaatccagatattgtctttagctcttttgtacatgatggacacacatacaaacacagttgtttatcttttaaaggttcagtctttgtcacagcaatgtcctggtcattattttcaaaatccatatattctcccaaaaattagtctaaatttatatcactatcgtcccatgataagaaatcactttccattttaaattcacaacctatttgtagcacaaatttattttgtttaaaagcaggtaatatgactccaaactataggtacaacttttattgggctaatagggtgacatcccgtgtattgaggatggcaattctgtgtattcggtgatgtcacttcactccacagttgtcatctgacacttggtactgactttcggaatgcatgttcaatacacagagtgtctatgaattaacacatgacactggtaaatttgaaaatgatttaatcttaccgtaaacagggatttaatgagtattcggtgactaaattgcgtcatacattaaacagaaagacatgaaattgaactctctcatcgctacagaacataaaaaatacgctcgtcacttctgaatATCACTATCATCCAATGATAAGAAATCAATTGCCATTTTAAATTCACGACTTTTTTGTAGCACt
gi|22 : cTGCCATAACACTATAATT-A-TA------------AG--GAAAA-----GACA--GCCATCACCATGTAAACCTATATTGTTGTTca
gi|23 : tcTTTCGCGAGAAGCACTTGCACCTTCAAG--T-GTG---TAT-TATGTC
gi|24 : TCGCGAGAAGCACCTGCACCAGCCAGTCT-CTG---TGtct
gi|3 : taGTCTTTGTCAGAGCAATGTGCTGGTCATTATTTGCATAATCCGTATACCGGTATTCTCCCAATAATAAGTCTAAATTTATATCACTATCGCCCCATGATAAGAACTCACTTGCAATTTTAAATTCACAACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATATATATGACTCTAAACTATAGG---TATAA-CTTTTATTTGGCTAATAGGGTGACATTCCGTGTTATGAGGAGGGCAATTCTGTGTATTCAGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGATTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCCGTGACTAAATTGCATCATTCATTGAACAGTGACAAATATATGAAATTGAACTCTCTCTCGTCGCTACAGAACA-AAAAAAA--TACACTTGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-GTG--ATAAAACAAA-CA-CAGTAATTAAATCACTGAGT------TGGC---A----ACAGT-TTGAGGTC-GG-TG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-ATTA-------TTAGTAGTAGAAAATTGTTGAAATTGCCGTCGCCACGTAAACAAATATTATTGTTTACACAGTTGCAGG--TGCG--------------CACAACTACAATATTG--------------CG-----------TCGTCTGGTTCCCTAATAAATCATTAAATCAACAATTTATTGAACG-GCGAGGAAACCATATCAAAT-------AT-------GGCAGAGATCACGGTCACGTGATTGAGAACAAAAGGTGTTTATGTGCTCTCGCGAGAAGCACCTGCATCTGCGAGTCTCCCA---TAT-TATGTC
gi|4 : TGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCAGAAAAAATGAGTTTAAATTAAATTACCTTTTGTAGTATTTATTCCATGCTTTTTTGTAACATGACCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGATGTTTATCTTTTAAAC-TTTAGTCTTTGTCATAGCAATTTGCTGGTCATTACTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCCAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCTCAAATTTATTTTGTTTAAAAGCAGGTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCGAACAGGGTGACATCTCGTGTATTGAGGATGGCAGTTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGGCTTTCGGAATGCATGTTCAATACACAGAGTGTCACTTCACTCCAC-AGTTGTCATCTGACACTTGGTACTGACTTTCGGA--------ATGCATGTTCATGGCACTGGTAAATTTGAAAATCTTACCGTAAACAGGGATGTTAATGAGTA--TT-CATCATACATTAAACAGTGt
gi|5 : taattgataaaagatagttgattttatctgctagactcccgctctccacaaaaaatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATAAATGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTT-TGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGGTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATACCACTGTGGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACATATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-TTTCTATTGGGCTAATAGGGTGACATCCCGCGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCTGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGGCAC-TTGTA---AATTT-GAA--------A---ATCTT------A-C-GTAAACAGGGA--------TGTCAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCAATGCTACAGAATA-AAAAAAA--TAAGCTCGCCACCTCTGAATTATGTTAAATG-ATA-AACAC-ATGATAT--AAAAAG-CA-CAGTAATTAAATtaa
gi|6 : aattgactggacttattcactgataaatctatcattaatcgaaaagcatgttatACTATAGG---TATAAACTTTTATTGGGCTAATAGGGTGACATCCCATG-----AGGATTGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACAC--AGTG---------TCTATGAATTGACACATAATA
gi|6 : CTATGAATT--GACACATA-ATA-AACAC---GATATAAAAA----CA-CAGTAATTAAATCACCGAGA------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATTTAAACCC-GTTCATCCATATTTTATGTATATATACCACAACAATTTAATT-A-TAATTTAAATTATAAGTAGAAAATTGTGGAA---------------TAAACTAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CAACTACACCGCATCGTCTAGTTCCCTAATTAATTGATAAATCAACAATTTATTAAACG-GCCACGAAACC-------AG-------ATCAAATATGGCAGAGATCACGGTCGCGTGAATGAGAACAATAGGTGTTTACGTACTCTCGCGAGAACCATCTACACCTGCGAGTCT-TTG---TAT-TATGTCaacacgatataaaaacacagtaattaaatcaccgagatggcaacagtgtgaggtcggggaaataataacaataaaacagtatttaaacccgttcatccatattttatgtatatataccacaacaatttaattataatttaaattataagtagaaaattgtggaataaactaatattattgtttacacagttgcaggtgcgcgcaactacaccgcatcgtctagttccctaattaattgataaatcaacaatttattaaacggccacgaaaccagatcaaatatggcagagatcacggtcgcgtgaatgagaacaataggtgtttacgtactctcgcgagaaccatctacacctgcgagtctttgtattatgtctct
gi|7 : actataggtataaacttttattgggctaatagggtgacatcccatgaggattgcaattctgtgtattcggtgatgtcacttcactccacagttgtcatctgacacttggtactgactttcggaatgcatgttcaatacacagtgtGCTACAGAACA-AAAAAAAAATACGCTCGTCACCTCTGAATTATGTTAAATA-ATT-AACAC-ATGATATAAAAAAA--CA-CAGTAATTAAATCACTGCAT------TGGC---A----ACAGT-GTCAGGTC-GG-GG-AAA-TAATAACAAT--AAA-CAGT---ATCAAAAGCC-GTTCATCAAAATATTCTGTATATATACCACAACAATATAATTAA-AA-------TTATAAGAAGAAAATTGCGGAAATTGCCGTCGCAACGTAAACCAATATTATTGTTTACACAGTTACAGG--TGCG--------------C--------------GCAACTACAATACCACA-----------TCATCTGGTTCTCTAATAAATTGATAAATCAACAATTTATTAAACA-GCCAGGAAACC-------AGATCAAATAT-------GGCGGAGATCACGGTCACGTGATTGAGAATAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TAT-TATGTtct
gi|8 : tT------TTGC---A----ACAGT-GCGAGGTC-GG-GG-AAAATTATTACAAT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|8 : cacaataaaacagtatcaatacaatatattttattct-CAGT----TCAAAACCC-GTTCATCAATATATTTTGTATATATACCACAACAATATAATTGA-AA-------TTATAAGTAGAAAATTGTGGAAATTGCCGTCGCAATGTAAACCAATTTTATTGTTTACACAGTTGCAGG--TGCC--------------C--------------G--------------CG-----------TAGTATTGTTCCCAAATAAATCGATTAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------ATCAAATA-GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGAGTTATTGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---CGTCTATGTtcttttatcttttattcactcagttcaaaacccgttcatcaatatattttgtatatataccacaacaatataattgaaattataagtagaaaattgtggaaattgccgtcgcaatgtaaaccaattttattgtttacacagttgcaggtgcccgcgtagtattgttcccaaataaatcgattaatcaacaatttattaaacggccaggaaaccagatcaaataggcggagatcacggtcacgtgattgagaacaataggtgtttacgagttattgcgagaagcacctgcacctgcgagtctctgcgtctatgt
gi|9 : cacaataaaacagtatcaatacaatatattttattcttttgcaacagtgcgaggtcggggaaaattattacaataaaacagtatcaatacaatatattttattcttttatcttttattcactTAATTAAATCACTGAGT------TTGC---A----ACAGT-GTGAGGTCAGG-GA-AAA-TTATCACATT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|9 : CATT-AAAA-CA-TGAAATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-------------TAAGTAGAAAATTGCAGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCGCGCAACTACAATACC--------------G--------------CA-----------TCATCTGGTTCCCTTATAAATTGATAAAT--------------------CAGGAAACC-------AGATCAAATAT-------GGTGCAGATCACGGTCACGTAATTGAGAACAATAGGTGTTAACGCGATTCCGCGAGGAGCACCTTGACCTTCAAGTCT-CTG---TGT-tcttttatcttttattcactcagttcattaaaacatgaaatcaaaacccgttcatcaatatattctgtatatataccacaacaatataattataagtagaaaattgcagaaattgccgtcgccacgtaaaccaatattattgtttacacagttgcaggtgcgcgcaactacaataccgcatcatctggttcccttataaattgataaatcaggaaaccagatcaaatatggtgcagatcacggtcacgtaattgagaacaataggtgttaacgcgattccgcgaggagcaccttgaccttcaagtctctgtgtattgag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTAGGTAACGATTATTTGGTTTGATTGACGTCGACGTCAAATTCGTTAGCGGACGTGATCATGTGATAAGCGTTTTTAATTGAAGTTGAATAAATAATGAAGAAGTTTGATAAACACCA
Unaligned ( gi|20 ): AATCATCAGCAGAAGTGGCTGCTGCATCATTTGAATACCGGTGGTCTTGTTTATGTTTATACATGCATATACGTTACATGTGTATGCGT
Alignments
lowQualScore : 11 222222 1111 111 222222222 111 222222222222 111111 22222222 11 11 111111 33333333333333 2222222222 888888888888888888888888888888888888888888888888888888888 7777777777777777777777777
lowQualScore : 1 2 8 11 3 5 8 0 0 1 2 333333 4444 000 5 222222222 6 111 6 666666666666 999999 6 44444444 6 1 11 6 99 5 5 55 22 00 5 222222 0 666 7777 3 0 3 3 3 3 3 3 0 555 3 3 33333333333333 0000000000 55 777777777777777777777777777777777777777777777777777777777 0 6 3333333333333333333333333 0 3 666 8
lowQualScore : . . . .. . . . . . . . ...... .... ... . ......... . ... . ............ ...... . ........ . . .. . .. . . .. .. .. . ...... . ... .... . . . . . . . . . ... . . .............. .......... .. ......................................................... . . ......................... . . ... .
lowQualScore : 0 5 0 00 2 0 0 8 8 0 5 000000 2222 000 7 999999999 7 777 7 888888888888 222222 7 22222222 7 7 00 7 22 7 7 99 99 00 0 888888 1 444 7777 6 4 6 6 6 6 3 1 2 444 5 1 99999999999999 3333333333 55 000000000000000000000000000000000000000000000000000000000 7 7 0000000000000000000000000 7 6 444 9
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAANCGAAATAAATGTTATAA-AT--AAGCTTGCGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGNTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-TA-------TTATAAGTAGAAAATTGCGGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATAAATCGATAAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------AT-------GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TGT-TATGTC
Reference ( family-5500 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAANCGAAATAAATGTTATAA-AT--AAGCTTGCGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGNTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-TA-------TTATAAGTAGAAAATTGCGGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATAAATCGATAAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------AT-------GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TGT-TATGTC
gi|1 : AATAAACCAAATAAAT-TTATCACGTTGAAGGTCACATACG-AGCTTCGGAAAAA-TAAGTTTAAATTAAAATACCTTTTGCAGTACTTATTCCATGCTTTTTTGCAACATGAGCTCGGAATCCAGATGTTGTCTTTAGCTCTTTTGAACATGATTGACCCACATACAAACACAGTTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAAAAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTGAATTCACGGCCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTTTAGG---TATAA-TTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTAATGTCACTTCACTCCACAATTGTCATATGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTAAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGCC-AG-GG-AAA-TAATAACAAT-CAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTTTATATACCACAACAATATAATT-A-TAT------TTATAAGTAGAAAATTGCGGAAA--GCCGTCGCCACGTACACCAATATTATTGTTTAAACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATTAATCGATAAATCAACAATTTATTAAACATGCAAGGAAACC-------AG-------AT-------GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGAGCTATCGCGAGAAGCACCTGCACTTGCGAGTCT-CTG---TGTCTATGTC
gi|10 : acaagtaaggcaaatgcagttgaatgtttgagatactggcataattatattacgtaacgactattatgaacgggaatggattcgtcgtcaacgtaacgtgcgtgtgcggaagtgccgatgcgttgagcgttgtttattgatgaatgagtaaatgttgatgaagtggTAATTGAAAAGCATGTTATAA-AT--AAGTCTGC---------TTCGGAAAAA-TGAGTTAAAATTGAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCATGGAATCAAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATc
gi|11 : atatttattctgatatctttactcaaagtggacttttgaaaaatgcagttgtgattgtaaaagattattgactgaactactgctctccacgaaaaaaaggacaaaaaatcattgtttttatcagcagaattaacataaataattcactgataaatctatcatTA---------TCTATGAATTGACACATGACAC-TGGTA---AGTTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTGGATTGTATCACACATTGAACTGTGACAAAGACATGAAACTGAA--CTCTCCCATCGCTACAGAACAGAAAAAAA--TACGCTCGTCATCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAACCA-CAGTAATTAAATCACCGTGT------TTGC---A----ACAGT-GTGAGGTC-GG-GGAAAA-TTATCACAAT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|12 : aAA-CATCAGTAATTACA-CACTGATT------CGGTTGTA----ACA-C-ATGACACC-AGTGG-A---TGGAAACAGCCAAAA-TTAT---ACCATA-CCT-GCCCATCAATATATTCTG--------CCATAACAAT--------------------ATAATTAGAAG----------------------CGTAAACCAATATTTTTGTTAAAACCATTGCAGG--TGTG--------------C--------------A--------------CA-----------ACGTCt
gi|12 : cGCGGAGATCACGTTCACGTGATTGAGAACAACTGGTGTTTCAGTGCTACTGATAGAAGCACCTGATGCTGCGAGTCT-TTG---TAT-TATattttcgcggagatcacgttcacgtgattgagaacaactggtgtttcagtgctactgatagaagcacctgatgctgcgagtctttgtattatagaccactggtttttgttttctaatattt
gi|13 : caacatcagtaattacacactgattcggttgtaacacatgacaccagtggatggaaacagccaaaattataccatacctgcccatcaatatattctgccataacaatataattagaagcgtaaaccaatatttttgttaaaaccattgcaggtgtgcacaacgtcattttcCAGAAATCACAGTCACAGGATTCAGAACAATTGGTGTTTACGTATTCTCGCGAGAAGCACCTGCTGCTGCGAGTCT-TTG---Tagaccactggtttttgttttctaatattt
gi|14 : acaattacctattcaacagtatcagtgacttaataacagcacaactctaAATTTATATCACTATCGTCCCATAATAAGAAATCACTTGCCATTTTAAATATACGACCTAATTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCTGACTATAGGTATTATAA-CTTTTATTGGGCTAGTATGATGACATTCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCAagataagtcactgacagtatttacttttttaaaatccattaaatgtcccaaattttcaccaatatacttattgcagtgctgatacaggttaaaaacaatacaaaaaatgtcaaa
gi|15 : GC---A----ATAGT-G-GAA--C-G-----AAA-TAATGA---T-AAAA-AATT---ACCAAAGCCT-GTTTATCAGTATATTCTG--------CCATGACAGTATA-------A-------TTATAAGCAGAAGAT-----A----GCCGCCGCCAC--AA--------TATTGTTTACACCGTTGCAGGTTTGTA--------------T--------------G--------------CG-----------Taatt
gi|16 : ctataaacggcatcgattaaatagctgatacgattgtaacataaaAACAATATAATT-A-TA------------AGTAGAAGAT------AA---CCATCGCCACGTACAGCAATATTATTGATTGCGCCGTTGATGG--TGCG--------------C--------------A--------------Catacattacatgtgtgtgcat
gi|16 : gtGCAGAGATCAAGGTCATCTGATTGAAAACAATAGGTATTTACATGTTCTCACGAGAAGCACCTGCTTGTGTGAGTCT-GTATATTGT-TATGTCaacaccactctcgcagagatcaaggtcatctgattgaaaacaataggtatttacatgttctcacgagaagcacctgcttgtgtgagtctgtatattgttatgtcac
gi|18 : gtaacaatataattataagtagaagataaccatcgccacgtacagcaatattattgattgcgccgttgatggtgcgcacaacaccactctcGATATAAAC-----CA-CAGTAATTAAATCATTGATTCAAACATAAC---ATAAAGCAATAGTGAAG------GG-AAA-TAATAATAAT-AAAAGCAAT---TTC--ATCCCTGTTCATCAATATATTac
gi|19 : C---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CATT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-T
gi|2 : tAAATAAATGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCAGAAAAA-TGAGTTTAA-----ATTACCTTTTGCGGTACGTATTCCATGCTTTTTTGTAACATGACCACGGAATCCAGATATTGTCTTTAGCTCTTTTGTACATGATGGACACACATACAAACACAGTTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTCCTGGTCATTATTTTCAAAATCCATATA------TTCTCCCAAAAATTAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTTCCATTTTAAATTCACAACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGGTAATAT----GACTCCAAACTATAGG---TACAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTAACACATGACAC-TGGTA---AATTT-GAAAATGATTTA---ATCTT------ACC-GTAAACAGGGA--------T-TTAATGAGTAT-TCGGTGACTAAATTGCGTCATACATTAAACAG----AAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-TAAAAAA--TACGCTCGTCACTTCTGAATTATGTTCTGTATATATACCACAACAATATAA
gi|2 : atatttttttcattatcattataattagtatgttgaatgatgcatgtttaatttatctgctgggctaccgctctccacaaaaaaattaaaaaacattgtttttatcagctgaattaacataaattaattcactgataaatctgtcattaatcgaaaagcatgttatTATGTTCTGTATATATACCACAACAATATAATT-A-------------TAAGTAGAGAATTGTGGTAATTGCTGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--GGCGCGCAACTACAAAACC--------------G--------------CG-----------TCATCTGGTTCCCTAATAAATCGGGAAATAAAttataagtagagaattgtggtaattgctgtcgccacgtaaaccaatattattgtttacacagttgcaggggcgcgcaactacaaaaccgcgtcatctggttccctaataaatcgggaaataaat
gi|21 : atatttttttcattatcattataattagtatgttgaatgatgcatgtttaatttatctgctgggctaccgctctccacaaaaaaattaaaaaacattgtttttatcagctgaattaacataaattaattcactgataaatctgtcattaatcgaaaagcatgttataaataaatgttataaataagcttgtgtagggagcttcagaaaaatgagtttaaattaccttttgcggtacgtattccatgcttttttgtaacatgaccacggaatccagatattgtctttagctcttttgtacatgatggacacacatacaaacacagttgtttatcttttaaaggttcagtctttgtcacagcaatgtcctggtcattattttcaaaatccatatattctcccaaaaattagtctaaatttatatcactatcgtcccatgataagaaatcactttccattttaaattcacaacctatttgtagcacaaatttattttgtttaaaagcaggtaatatgactccaaactataggtacaacttttattgggctaatagggtgacatcccgtgtattgaggatggcaattctgtgtattcggtgatgtcacttcactccacagttgtcatctgacacttggtactgactttcggaatgcatgttcaatacacagagtgtctatgaattaacacatgacactggtaaatttgaaaatgatttaatcttaccgtaaacagggatttaatgagtattcggtgactaaattgcgtcatacattaaacagaaagacatgaaattgaactctctcatcgctacagaacataaaaaatacgctcgtcacttctgaatATCACTATCATCCAATGATAAGAAATCAATTGCCATTTTAAATTCACGACTTTTTTGTAGCACt
gi|22 : cTGCCATAACACTATAATT-A-TA------------AG--GAAAA-----GACA--GCCATCACCATGTAAACCTATATTGTTGTTca
gi|23 : tcTTTCGCGAGAAGCACTTGCACCTTCAAG--T-GTG---TAT-TATGTC
gi|24 : TCGCGAGAAGCACCTGCACCAGCCAGTCT-CTG---TGtct
gi|3 : taGTCTTTGTCAGAGCAATGTGCTGGTCATTATTTGCATAATCCGTATACCGGTATTCTCCCAATAATAAGTCTAAATTTATATCACTATCGCCCCATGATAAGAACTCACTTGCAATTTTAAATTCACAACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATATATATGACTCTAAACTATAGG---TATAA-CTTTTATTTGGCTAATAGGGTGACATTCCGTGTTATGAGGAGGGCAATTCTGTGTATTCAGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGATTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCCGTGACTAAATTGCATCATTCATTGAACAGTGACAAATATATGAAATTGAACTCTCTCTCGTCGCTACAGAACA-AAAAAAA--TACACTTGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-GTG--ATAAAACAAA-CA-CAGTAATTAAATCACTGAGT------TGGC---A----ACAGT-TTGAGGTC-GG-TG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-ATTA-------TTAGTAGTAGAAAATTGTTGAAATTGCCGTCGCCACGTAAACAAATATTATTGTTTACACAGTTGCAGG--TGCG--------------CACAACTACAATATTG--------------CG-----------TCGTCTGGTTCCCTAATAAATCATTAAATCAACAATTTATTGAACG-GCGAGGAAACCATATCAAAT-------AT-------GGCAGAGATCACGGTCACGTGATTGAGAACAAAAGGTGTTTATGTGCTCTCGCGAGAAGCACCTGCATCTGCGAGTCTCCCA---TAT-TATGTC
gi|4 : TGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCAGAAAAAATGAGTTTAAATTAAATTACCTTTTGTAGTATTTATTCCATGCTTTTTTGTAACATGACCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGATGTTTATCTTTTAAAC-TTTAGTCTTTGTCATAGCAATTTGCTGGTCATTACTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCCAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCTCAAATTTATTTTGTTTAAAAGCAGGTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCGAACAGGGTGACATCTCGTGTATTGAGGATGGCAGTTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGGCTTTCGGAATGCATGTTCAATACACAGAGTGTCACTTCACTCCAC-AGTTGTCATCTGACACTTGGTACTGACTTTCGGA--------ATGCATGTTCATGGCACTGGTAAATTTGAAAATCTTACCGTAAACAGGGATGTTAATGAGTA--TT-CATCATACATTAAACAGTGt
gi|5 : taattgataaaagatagttgattttatctgctagactcccgctctccacaaaaaatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATAAATGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTT-TGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGGTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATACCACTGTGGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACATATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-TTTCTATTGGGCTAATAGGGTGACATCCCGCGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCTGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGGCAC-TTGTA---AATTT-GAA--------A---ATCTT------A-C-GTAAACAGGGA--------TGTCAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCAATGCTACAGAATA-AAAAAAA--TAAGCTCGCCACCTCTGAATTATGTTAAATG-ATA-AACAC-ATGATAT--AAAAAG-CA-CAGTAATTAAATtaa
gi|6 : aattgactggacttattcactgataaatctatcattaatcgaaaagcatgttatACTATAGG---TATAAACTTTTATTGGGCTAATAGGGTGACATCCCATG-----AGGATTGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACAC--AGTG---------TCTATGAATTGACACATAATA
gi|6 : CTATGAATT--GACACATA-ATA-AACAC---GATATAAAAA----CA-CAGTAATTAAATCACCGAGA------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATTTAAACCC-GTTCATCCATATTTTATGTATATATACCACAACAATTTAATT-A-TAATTTAAATTATAAGTAGAAAATTGTGGAA---------------TAAACTAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CAACTACACCGCATCGTCTAGTTCCCTAATTAATTGATAAATCAACAATTTATTAAACG-GCCACGAAACC-------AG-------ATCAAATATGGCAGAGATCACGGTCGCGTGAATGAGAACAATAGGTGTTTACGTACTCTCGCGAGAACCATCTACACCTGCGAGTCT-TTG---TAT-TATGTCaacacgatataaaaacacagtaattaaatcaccgagatggcaacagtgtgaggtcggggaaataataacaataaaacagtatttaaacccgttcatccatattttatgtatatataccacaacaatttaattataatttaaattataagtagaaaattgtggaataaactaatattattgtttacacagttgcaggtgcgcgcaactacaccgcatcgtctagttccctaattaattgataaatcaacaatttattaaacggccacgaaaccagatcaaatatggcagagatcacggtcgcgtgaatgagaacaataggtgtttacgtactctcgcgagaaccatctacacctgcgagtctttgtattatgtctct
gi|7 : actataggtataaacttttattgggctaatagggtgacatcccatgaggattgcaattctgtgtattcggtgatgtcacttcactccacagttgtcatctgacacttggtactgactttcggaatgcatgttcaatacacagtgtGCTACAGAACA-AAAAAAAAATACGCTCGTCACCTCTGAATTATGTTAAATA-ATT-AACAC-ATGATATAAAAAAA--CA-CAGTAATTAAATCACTGCAT------TGGC---A----ACAGT-GTCAGGTC-GG-GG-AAA-TAATAACAAT--AAA-CAGT---ATCAAAAGCC-GTTCATCAAAATATTCTGTATATATACCACAACAATATAATTAA-AA-------TTATAAGAAGAAAATTGCGGAAATTGCCGTCGCAACGTAAACCAATATTATTGTTTACACAGTTACAGG--TGCG--------------C--------------GCAACTACAATACCACA-----------TCATCTGGTTCTCTAATAAATTGATAAATCAACAATTTATTAAACA-GCCAGGAAACC-------AGATCAAATAT-------GGCGGAGATCACGGTCACGTGATTGAGAATAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TAT-TATGTtct
gi|8 : tT------TTGC---A----ACAGT-GCGAGGTC-GG-GG-AAAATTATTACAAT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|8 : cacaataaaacagtatcaatacaatatattttattct-CAGT----TCAAAACCC-GTTCATCAATATATTTTGTATATATACCACAACAATATAATTGA-AA-------TTATAAGTAGAAAATTGTGGAAATTGCCGTCGCAATGTAAACCAATTTTATTGTTTACACAGTTGCAGG--TGCC--------------C--------------G--------------CG-----------TAGTATTGTTCCCAAATAAATCGATTAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------ATCAAATA-GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGAGTTATTGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---CGTCTATGTtcttttatcttttattcactcagttcaaaacccgttcatcaatatattttgtatatataccacaacaatataattgaaattataagtagaaaattgtggaaattgccgtcgcaatgtaaaccaattttattgtttacacagttgcaggtgcccgcgtagtattgttcccaaataaatcgattaatcaacaatttattaaacggccaggaaaccagatcaaataggcggagatcacggtcacgtgattgagaacaataggtgtttacgagttattgcgagaagcacctgcacctgcgagtctctgcgtctatgt
gi|9 : cacaataaaacagtatcaatacaatatattttattcttttgcaacagtgcgaggtcggggaaaattattacaataaaacagtatcaatacaatatattttattcttttatcttttattcactTAATTAAATCACTGAGT------TTGC---A----ACAGT-GTGAGGTCAGG-GA-AAA-TTATCACATT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|9 : CATT-AAAA-CA-TGAAATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-------------TAAGTAGAAAATTGCAGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCGCGCAACTACAATACC--------------G--------------CA-----------TCATCTGGTTCCCTTATAAATTGATAAAT--------------------CAGGAAACC-------AGATCAAATAT-------GGTGCAGATCACGGTCACGTAATTGAGAACAATAGGTGTTAACGCGATTCCGCGAGGAGCACCTTGACCTTCAAGTCT-CTG---TGT-tcttttatcttttattcactcagttcattaaaacatgaaatcaaaacccgttcatcaatatattctgtatatataccacaacaatataattataagtagaaaattgcagaaattgccgtcgccacgtaaaccaatattattgtttacacagttgcaggtgcgcgcaactacaataccgcatcatctggttcccttataaattgataaatcaggaaaccagatcaaatatggtgcagatcacggtcacgtaattgagaacaataggtgttaacgcgattccgcgaggagcaccttgaccttcaagtctctgtgtattgag
blockSeqs : T G . . G G A T G CCGGTA ATAT TAT A TCACTTCAC T CTG C AATGATTTA CATGGC G AATCTTAC G G CT G AA T T AA AA AC T CAAACA TGT TAAA A A T A A C G GAA C T ATAATTTAAATT TGTGGTAATT TT CGCAACTACAAAACCGCG . ATATCAAATAT C TAT C
blockSeqs : . . G G . A G . . . . . . . . ATGC . . . . A . . . . . A CA A . . . . . . . . . . . . C . ATTATT TGTTGAAATT . CACAACTACAATATTGCG . AGATCAAATAT . . .
blockSeqs : . . G G . G . . . . . . . . . A . . . . A . . . . . G AA A . . . . . . . . . . . . C . AAAATT TGCGGAAATT . CGCAACTACAATACCACA . AGATCAAATAT . . .
blockSeqs : . . . . . . . . . . . . . A . . . . A . . . . . A AA G . . . . . . . . . . . . C . GAAATT TGTGGAAATT . CGCAACTACAATACCGCA . AGATCAAATAT . . .
blockSeqs : . . . . . . . A . . . . . . . . . A A . . . . . . . . . . . . . C . ATT TGCAGAAATT . CGCAACTACACCGCA . AGATCAAATA . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . C . ATA TGTGGAA . CACA . . .
blockSeqs : . . . . . . . . . . . . . G . ATA GACA . TGCG . . .
blockSeqs : . . . . . . . . . . . C . A AA . CGCG . . .
blockSeqs : . . . . . . . . . . C . A A . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqCons : ** A* ATT*********** TGCGGAAATT AGATCAAATAT**************
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAANCGAAATAAATGTTATAA-AT--AAGCTTGCGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGNTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATT-A-TA-------TTATAAGTAGAAAATTGCGGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATAAATCGATAAATCAACAATTTATTAAACG-GCCAGGAAACC-------AG-------AT-------GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TGT-TATGTC
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAANCGAAATAAATGTTATAA-AT--AAGCTTGCGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGNTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAATATAATTATT-----------ATAAGTAGAAAATTGCGGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATAAATCGATAAATCAACAATTTATTAAACG-GCCAGGAAACCAGATCAAATAT--------------GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TGT-TATGTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTAGGTAACGATTATTTGGTTTGATTGACGTCGACGTCAAATTCGTTAGCGGACGTGATCATGTGATAAGCGTTTTTAATTGAAGTTGAATAAATAATGAAGAAGTTTGATAAACACCA
Unaligned ( gi|20 ): AATCATCAGCAGAAGTGGCTGCTGCATCATTTGAATACCGGTGGTCTTGTTTATGTTTATACATGCATATACGTTACATGTGTATGCGT
Alignments
lowQualScore : 11 222222 1111 111 222222222 111 222222222222 111111 22222222 11 11 111111 22222222222 11 888888888888888888888888888888888888888888888888888888888
lowQualScore : 1 2 8 11 3 5 8 0 0 1 2 333333 4444 000 5 222222222 6 111 6 666666666666 999999 6 44444444 6 1 11 6 99 5 5 55 22 00 5 222222 0 666 7777 3 0 3 3 3 3 3 3 0 555 3 3 999999 99999999999 55 4444 77 55 777777777777777777777777777777777777777777777777777777777 0 6 0 3 666 8
lowQualScore : . . . .. . . . . . . . ...... .... ... . ......... . ... . ............ ...... . ........ . . .. . .. . . .. .. .. . ...... . ... .... . . . . . . . . . ... . . ...... ........... .. .... .. .. ......................................................... . . . . ... .
lowQualScore : 0 5 0 00 2 0 0 8 8 0 5 000000 2222 000 7 999999999 7 777 7 888888888888 222222 7 22222222 7 7 00 7 22 7 7 99 99 00 0 888888 1 444 7777 6 4 6 6 6 6 3 1 2 444 5 1 666666 55555555555 00 3333 33 55 000000000000000000000000000000000000000000000000000000000 7 7 7 6 444 9
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAANCGAAATAAATGTTATAA-AT--AAGCTTGCGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGNTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAAT------ATAATT---A---TTA-TA--AGTAGAAAATTGCGGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATAAATCGATAAATCAACAATTTATTAAACG-GCCAGGAAACCAGATCAAATATGGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TGT-TATGTC
Reference ( family-5500 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAANCGAAATAAATGTTATAA-AT--AAGCTTGCGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGNTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAAT------ATAATT---A---TTA-TA--AGTAGAAAATTGCGGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATAAATCGATAAATCAACAATTTATTAAACG-GCCAGGAAACCAGATCAAATATGGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TGT-TATGTC
gi|1 : AATAAACCAAATAAAT-TTATCACGTTGAAGGTCACATACG-AGCTTCGGAAAAA-TAAGTTTAAATTAAAATACCTTTTGCAGTACTTATTCCATGCTTTTTTGCAACATGAGCTCGGAATCCAGATGTTGTCTTTAGCTCTTTTGAACATGATTGACCCACATACAAACACAGTTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAAAAAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTGAATTCACGGCCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTTTAGG---TATAA-TTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTAATGTCACTTCACTCCACAATTGTCATATGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-AAAAAAA--TACGCTCGTCACCTCTGAATTATGTAAAATA-ATA-AACAC-ATGATATAAAAAAAA-CA-CAGTAATTAAATCACCGAGT------TGGC---A----ACAGT-GTGAGGCC-AG-GG-AAA-TAATAACAAT-CAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTTTATATACCACAACAAT------ATAATT---ATATTTA-TA--AGTAGAAAATTGCGGAAA--GCCGTCGCCACGTACACCAATATTATTGTTTAAACAGTTGCAGG--TGCG--------------C--------------G--------------CG-----------TCGTCTGGTTCCCTAATTAATCGATAAATCAACAATTTATTAAACATGCAAGGAAACCAG-------ATGGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGAGCTATCGCGAGAAGCACCTGCACTTGCGAGTCT-CTG---TGTCTATGTC
gi|10 : acaagtaaggcaaatgcagttgaatgtttgagatactggcataattatattacgtaacgactattatgaacgggaatggattcgtcgtcaacgtaacgtgcgtgtgcggaagtgccgatgcgttgagcgttgtttattgatgaatgagtaaatgttgatgaagtggTAATTGAAAAGCATGTTATAA-AT--AAGTCTGC---------TTCGGAAAAA-TGAGTTAAAATTGAATTACCTTTTGCAGTACTTATTCCATGCTTTTTTGTAACATGAGCATGGAATCAAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATc
gi|11 : atatttattctgatatctttactcaaagtggacttttgaaaaatgcagttgtgattgtaaaagattattgactgaactactgctctccacgaaaaaaaggacaaaaaatcattgtttttatcagcagaattaacataaataattcactgataaatctatcatTA---------TCTATGAATTGACACATGACAC-TGGTA---AGTTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCAGTGACTGGATTGTATCACACATTGAACTGTGACAAAGACATGAAACTGAA--CTCTCCCATCGCTACAGAACAGAAAAAAA--TACGCTCGTCATCTCTGAATTATGTTAAATA-ATA-AACAC-ATGATATAAAAAAAACCA-CAGTAATTAAATCACCGTGT------TTGC---A----ACAGT-GTGAGGTC-GG-GGAAAA-TTATCACAAT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|12 : aAA-CATCAGTAATTACA-CACTGATT------CGGTTGTA----ACA-C-ATGACACC-AGTGG-A---TGGAAACAGCCAAAA-TTAT---ACCATA-CCT-GCCCATCAATATATTCTG--------CCATAACAAT------ATAAT------------------TAGAA----GCGTAAA------------------CCAATATTTTTGTTAAAACCATTGCAGG--TGTG--------------C--------------A--------------CA-----------ACGTCt
gi|12 : cGCGGAGATCACGTTCACGTGATTGAGAACAACTGGTGTTTCAGTGCTACTGATAGAAGCACCTGATGCTGCGAGTCT-TTG---TAT-TATattttcgcggagatcacgttcacgtgattgagaacaactggtgtttcagtgctactgatagaagcacctgatgctgcgagtctttgtattatagaccactggtttttgttttctaatattt
gi|13 : caacatcagtaattacacactgattcggttgtaacacatgacaccagtggatggaaacagccaaaattataccatacctgcccatcaatatattctgccataacaatataattagaagcgtaaaccaatatttttgttaaaaccattgcaggtgtgcacaacgtcattttcCAGAAATCACAGTCACAGGATTCAGAACAATTGGTGTTTACGTATTCTCGCGAGAAGCACCTGCTGCTGCGAGTCT-TTG---Tagaccactggtttttgttttctaatattt
gi|14 : acaattacctattcaacagtatcagtgacttaataacagcacaactctaAATTTATATCACTATCGTCCCATAATAAGAAATCACTTGCCATTTTAAATATACGACCTAATTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCTGACTATAGGTATTATAA-CTTTTATTGGGCTAGTATGATGACATTCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCAagataagtcactgacagtatttacttttttaaaatccattaaatgtcccaaattttcaccaatatacttattgcagtgctgatacaggttaaaaacaatacaaaaaatgtcaaa
gi|15 : GC---A----ATAGT-G-GAA--C-G-----AAA-TAATGA---T-AAAA-AATT---ACCAAAGCCT-GTTTATCAGTATATTCTG--------CCATGACAGT------ATA------A---TTA-TA--AGCAGAAGAT-----A----GCCGCCGCCAC--AA--------TATTGTTTACACCGTTGCAGGTTTGTA--------------T--------------G--------------CG-----------Taatt
gi|16 : ctataaacggcatcgattaaatagctgatacgattgtaacataaaAACAAT------ATAATT---A---T----A--AGTAGAAGAT------AA---CCATCGCCACGTACAGCAATATTATTGATTGCGCCGTTGATGG--TGCG--------------C--------------A--------------Catacattacatgtgtgtgcat
gi|16 : gtGCAGAGATCAAGGTCATCTGATTGAAAACAATAGGTATTTACATGTTCTCACGAGAAGCACCTGCTTGTGTGAGTCT-GTATATTGT-TATGTCaacaccactctcgcagagatcaaggtcatctgattgaaaacaataggtatttacatgttctcacgagaagcacctgcttgtgtgagtctgtatattgttatgtcac
gi|18 : gtaacaatataattataagtagaagataaccatcgccacgtacagcaatattattgattgcgccgttgatggtgcgcacaacaccactctcGATATAAAC-----CA-CAGTAATTAAATCATTGATTCAAACATAAC---ATAAAGCAATAGTGAAG------GG-AAA-TAATAATAAT-AAAAGCAAT---TTC--ATCCCTGTTCATCAATATATTac
gi|19 : C---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CATT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAAT------ATAATT---A---T
gi|2 : tAAATAAATGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCAGAAAAA-TGAGTTTAA-----ATTACCTTTTGCGGTACGTATTCCATGCTTTTTTGTAACATGACCACGGAATCCAGATATTGTCTTTAGCTCTTTTGTACATGATGGACACACATACAAACACAGTTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTCCTGGTCATTATTTTCAAAATCCATATA------TTCTCCCAAAAATTAGTCTAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTTCCATTTTAAATTCACAACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGGTAATAT----GACTCCAAACTATAGG---TACAA-CTTTTATTGGGCTAATAGGGTGACATCCCGTGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTAACACATGACAC-TGGTA---AATTT-GAAAATGATTTA---ATCTT------ACC-GTAAACAGGGA--------T-TTAATGAGTAT-TCGGTGACTAAATTGCGTCATACATTAAACAG----AAAGACATGAAATTGAA--CTCTCTCATCGCTACAGAACA-TAAAAAA--TACGCTCGTCACTTCTGAATTATGTTCTGTATATATACCACAACAATATAA
gi|2 : atatttttttcattatcattataattagtatgttgaatgatgcatgtttaatttatctgctgggctaccgctctccacaaaaaaattaaaaaacattgtttttatcagctgaattaacataaattaattcactgataaatctgtcattaatcgaaaagcatgttatTATGTTCTGTATATATACCACAACAAT------ATAATT---A-------TA--AGTAGAGAATTGTGGTAATTGCTGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--GGCGCGCAACTACAAAACC--------------G--------------CG-----------TCATCTGGTTCCCTAATAAATCGGGAAATAAAttataagtagagaattgtggtaattgctgtcgccacgtaaaccaatattattgtttacacagttgcaggggcgcgcaactacaaaaccgcgtcatctggttccctaataaatcgggaaataaat
gi|21 : atatttttttcattatcattataattagtatgttgaatgatgcatgtttaatttatctgctgggctaccgctctccacaaaaaaattaaaaaacattgtttttatcagctgaattaacataaattaattcactgataaatctgtcattaatcgaaaagcatgttataaataaatgttataaataagcttgtgtagggagcttcagaaaaatgagtttaaattaccttttgcggtacgtattccatgcttttttgtaacatgaccacggaatccagatattgtctttagctcttttgtacatgatggacacacatacaaacacagttgtttatcttttaaaggttcagtctttgtcacagcaatgtcctggtcattattttcaaaatccatatattctcccaaaaattagtctaaatttatatcactatcgtcccatgataagaaatcactttccattttaaattcacaacctatttgtagcacaaatttattttgtttaaaagcaggtaatatgactccaaactataggtacaacttttattgggctaatagggtgacatcccgtgtattgaggatggcaattctgtgtattcggtgatgtcacttcactccacagttgtcatctgacacttggtactgactttcggaatgcatgttcaatacacagagtgtctatgaattaacacatgacactggtaaatttgaaaatgatttaatcttaccgtaaacagggatttaatgagtattcggtgactaaattgcgtcatacattaaacagaaagacatgaaattgaactctctcatcgctacagaacataaaaaatacgctcgtcacttctgaatATCACTATCATCCAATGATAAGAAATCAATTGCCATTTTAAATTCACGACTTTTTTGTAGCACt
gi|22 : cTGCCATAACACT------ATAATT---A---T----A--AG--GAAAA-----GACA--GCCATCACCATGTAAACCTATATTGTTGTTca
gi|23 : tcTTTCGCGAGAAGCACTTGCACCTTCAAG--T-GTG---TAT-TATGTC
gi|24 : TCGCGAGAAGCACCTGCACCAGCCAGTCT-CTG---TGtct
gi|3 : taGTCTTTGTCAGAGCAATGTGCTGGTCATTATTTGCATAATCCGTATACCGGTATTCTCCCAATAATAAGTCTAAATTTATATCACTATCGCCCCATGATAAGAACTCACTTGCAATTTTAAATTCACAACCTATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATATATATGACTCTAAACTATAGG---TATAA-CTTTTATTTGGCTAATAGGGTGACATTCCGTGTTATGAGGAGGGCAATTCTGTGTATTCAGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGATTTTCGGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGACAC-TGGTA---AATTT-GAA--------A---ATCTT------ACC-GTAAACAGGGA--------TGTTAATGAGTAT-TCCGTGACTAAATTGCATCATTCATTGAACAGTGACAAATATATGAAATTGAACTCTCTCTCGTCGCTACAGAACA-AAAAAAA--TACACTTGTCACCTCTGAATTATGTTAAATA-ATA-AACAC-GTG--ATAAAACAAA-CA-CAGTAATTAAATCACTGAGT------TGGC---A----ACAGT-TTGAGGTC-GG-TG-AAA-TAATAACAAT-AAAA-CAGT---ATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAAT------ATAATT---A---TTATTAGTAGTAGAAAATTGTTGAAATTGCCGTCGCCACGTAAACAAATATTATTGTTTACACAGTTGCAGG--TGCG--------------CACAACTACAATATTG--------------CG-----------TCGTCTGGTTCCCTAATAAATCATTAAATCAACAATTTATTGAACG-GCGAGGAAACCATATCAAATATGGCAGAGATCACGGTCACGTGATTGAGAACAAAAGGTGTTTATGTGCTCTCGCGAGAAGCACCTGCATCTGCGAGTCTCCCA---TAT-TATGTC
gi|4 : TGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCAGAAAAAATGAGTTTAAATTAAATTACCTTTTGTAGTATTTATTCCATGCTTTTTTGTAACATGACCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGATGTTTATCTTTTAAAC-TTTAGTCTTTGTCATAGCAATTTGCTGGTCATTACTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCCAAATTTATATCACTATCGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACCTATTTGTAGCTCAAATTTATTTTGTTTAAAAGCAGGTAATAT----GACTCCAAACTATAGG---TATAA-CTTTTATTGGGCGAACAGGGTGACATCTCGTGTATTGAGGATGGCAGTTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGGCTTTCGGAATGCATGTTCAATACACAGAGTGTCACTTCACTCCAC-AGTTGTCATCTGACACTTGGTACTGACTTTCGGA--------ATGCATGTTCATGGCACTGGTAAATTTGAAAATCTTACCGTAAACAGGGATGTTAATGAGTA--TT-CATCATACATTAAACAGTGt
gi|5 : taattgataaaagatagttgattttatctgctagactcccgctctccacaaaaaatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATAAATGTTATAA-AT--AAGCTTGTGTAGGGAGCTTCGGAAAAA-TGAGTTTAAATTAAATTACCTTTTGCAGTACTTATTCCATGCTTTT-TGTAACATGAGCACGGAATCCAGATATTGTCTTTAGCTCTTTTGAACATGATGGACACACATACAAACACAGGTGTTTATCTTTTAAAGGTTCAGTCTTTGTCACAGCAATGTGCTGGTCATTATTTTCATAATCCGTATA------TTCTCCCAATAATAAGTCTAAATTTATACCACTGTGGTCCCATGATAAGAAATCACTTGCCATTTTAAATTCACGACATATTTGTAGCACAAATTTATTTTGTTTAAAAGCAGTTAATAT----GACTCCAAACTATAGG---TATAA-TTTCTATTGGGCTAATAGGGTGACATCCCGCGTATTGAGGATGGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCTGAATGCATGTTCAATACACAGAGTG---------TCTATGAATTGACACATGGCAC-TTGTA---AATTT-GAA--------A---ATCTT------A-C-GTAAACAGGGA--------TGTCAATGAGTAT-TCAGTGACTAAATTGCATCATACATTGAACAGTGACAAAGACATGAAATTGAA--CTCTCTCAATGCTACAGAATA-AAAAAAA--TAAGCTCGCCACCTCTGAATTATGTTAAATG-ATA-AACAC-ATGATAT--AAAAAG-CA-CAGTAATTAAATtaa
gi|6 : aattgactggacttattcactgataaatctatcattaatcgaaaagcatgttatACTATAGG---TATAAACTTTTATTGGGCTAATAGGGTGACATCCCATG-----AGGATTGCAATTCTGTGTATTCGGTGATGTCACTTCACTCCACAGTTGTCATCTGACACTTGGTACTGACTTTCGGAATGCATGTTCAATACAC--AGTG---------TCTATGAATTGACACATAATA
gi|6 : CTATGAATT--GACACATA-ATA-AACAC---GATATAAAAA----CA-CAGTAATTAAATCACCGAGA------TGGC---A----ACAGT-GTGAGGTC-GG-GG-AAA-TAATAACAAT-AAAA-CAGT---ATTTAAACCC-GTTCATCCATATTTTATGTATATATACCACAACAATTTAATTATAATTTAAA---TTA-TA--AGTAGAAAATTGTGGAA---------------TAAACTAATATTATTGTTTACACAGTTGCAGG--TGCG--------------C--------------G--------------CAACTACACCGCATCGTCTAGTTCCCTAATTAATTGATAAATCAACAATTTATTAAACG-GCCACGAAACCAGATCAAATATGGCAGAGATCACGGTCGCGTGAATGAGAACAATAGGTGTTTACGTACTCTCGCGAGAACCATCTACACCTGCGAGTCT-TTG---TAT-TATGTCaacacgatataaaaacacagtaattaaatcaccgagatggcaacagtgtgaggtcggggaaataataacaataaaacagtatttaaacccgttcatccatattttatgtatatataccacaacaatttaattataatttaaattataagtagaaaattgtggaataaactaatattattgtttacacagttgcaggtgcgcgcaactacaccgcatcgtctagttccctaattaattgataaatcaacaatttattaaacggccacgaaaccagatcaaatatggcagagatcacggtcgcgtgaatgagaacaataggtgtttacgtactctcgcgagaaccatctacacctgcgagtctttgtattatgtctct
gi|7 : actataggtataaacttttattgggctaatagggtgacatcccatgaggattgcaattctgtgtattcggtgatgtcacttcactccacagttgtcatctgacacttggtactgactttcggaatgcatgttcaatacacagtgtGCTACAGAACA-AAAAAAAAATACGCTCGTCACCTCTGAATTATGTTAAATA-ATT-AACAC-ATGATATAAAAAAA--CA-CAGTAATTAAATCACTGCAT------TGGC---A----ACAGT-GTCAGGTC-GG-GG-AAA-TAATAACAAT-AAA--CAGT---ATCAAAAGCC-GTTCATCAAAATATTCTGTATATATACCACAACAAT------ATAATT---AAAATTA-TA--AGAAGAAAATTGCGGAAATTGCCGTCGCAACGTAAACCAATATTATTGTTTACACAGTTACAGG--TGCG--------------C--------------GCAACTACAATACCACA-----------TCATCTGGTTCTCTAATAAATTGATAAATCAACAATTTATTAAACA-GCCAGGAAACCAGATCAAATATGGCGGAGATCACGGTCACGTGATTGAGAATAATAGGTGTTTACGTGCTCTCGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---TAT-TATGTtct
gi|8 : tT------TTGC---A----ACAGT-GCGAGGTC-GG-GG-AAAATTATTACAAT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|8 : cacaataaaacagtatcaatacaatatattttattct-CAGT----TCAAAACCC-GTTCATCAATATATTTTGTATATATACCACAACAAT------ATAATTGAAA---TTA-TA--AGTAGAAAATTGTGGAAATTGCCGTCGCAATGTAAACCAATTTTATTGTTTACACAGTTGCAGG--TGCC--------------C--------------G--------------CG-----------TAGTATTGTTCCCAAATAAATCGATTAATCAACAATTTATTAAACG-GCCAGGAAACCAGATCAAATA-GGCGGAGATCACGGTCACGTGATTGAGAACAATAGGTGTTTACGAGTTATTGCGAGAAGCACCTGCACCTGCGAGTCT-CTG---CGTCTATGTtcttttatcttttattcactcagttcaaaacccgttcatcaatatattttgtatatataccacaacaatataattgaaattataagtagaaaattgtggaaattgccgtcgcaatgtaaaccaattttattgtttacacagttgcaggtgcccgcgtagtattgttcccaaataaatcgattaatcaacaatttattaaacggccaggaaaccagatcaaataggcggagatcacggtcacgtgattgagaacaataggtgtttacgagttattgcgagaagcacctgcacctgcgagtctctgcgtctatgt
gi|9 : cacaataaaacagtatcaatacaatatattttattcttttgcaacagtgcgaggtcggggaaaattattacaataaaacagtatcaatacaatatattttattcttttatcttttattcactTAATTAAATCACTGAGT------TTGC---A----ACAGT-GTGAGGTCAGG-GA-AAA-TTATCACATT-AAAA-CAGT---ATCAATA----------CAATATATTTTAT
gi|9 : CATT-AAAA-CA-TGAAATCAAAACCC-GTTCATCAATATATTCTGTATATATACCACAACAAT------ATAATT---A-------TA--AGTAGAAAATTGCAGAAATTGCCGTCGCCACGTAAACCAATATTATTGTTTACACAGTTGCAGG--TGCGCGCAACTACAATACC--------------G--------------CA-----------TCATCTGGTTCCCTTATAAATTGATAAAT--------------------CAGGAAACCAGATCAAATATGGTGCAGATCACGGTCACGTAATTGAGAACAATAGGTGTTAACGCGATTCCGCGAGGAGCACCTTGACCTTCAAGTCT-CTG---TGT-tcttttatcttttattcactcagttcattaaaacatgaaatcaaaacccgttcatcaatatattctgtatatataccacaacaatataattataagtagaaaattgcagaaattgccgtcgccacgtaaaccaatattattgtttacacagttgcaggtgcgcgcaactacaataccgcatcatctggttcccttataaattgataaatcaggaaaccagatcaaatatggtgcagatcacggtcacgtaattgagaacaataggtgttaacgcgattccgcgaggagcaccttgaccttcaagtctctgtgtattgag
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTAGGTAACGATTATTTGGTTTGATTGACGTCGACGTCAAATTCGTTAGCGGACGTGATCATGTGATAAGCGTTTTTAATTGAAGTTGAATAAATAATGAAGAAGTTTGATAAACACCA
Unaligned ( gi|20 ): AATCATCAGCAGAAGTGGCTGCTGCATCATTTGAATACCGGTGGTCTTGTTTATGTTTATACATGCATATACGTTACATGTGTATGCGT