lowQualScore : 1111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 11 111 5555555 1 111 33333333333 1111111 22222222222 11111 1 6666666666666666666666666666666 44444 44444444444 1 9999999999999999999999999999999999999999999999999999999 1 1 3333333333333333333 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4444444444 222222222222222
lowQualScore : 2 3 3 99999 55 77 3 3 33 3 77 44 6666 000 2222222 0 0 0 6 8 000 22222222222 0 3333333 88888888888 22222 4 55 0 3333333333333333333333333333333 0 5 5 4 22222 5 6 66666666666 777 4 4 3 4 4 0000000000000000000000000000000000000000000000000000000 22 3 1 0 6 1111111111111111111 22 1 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 1 99 6666666666 66 7 111111111111111 5 5
lowQualScore : . . . ..... .. .. . . .. . .. .. .... ... ....... . . . . . ... ........... . ....... ........... ..... . .. . ............................... . . . . ..... . . ........... ... . . . . . ....................................................... .. . . . . ................... .. . . ............................................................................................................................ .. . .. .......... .. . ............... . .
lowQualScore : 8 6 6 11111 00 33 6 6 11 6 88 55 8888 333 4444444 8 1 3 0 7 000 77777777777 1 4444444 77777777777 55555 8 44 1 1111111111111111111111111111111 9 7 7 3 44444 7 0 44444444444 888 7 4 9 4 4 5555555555555555555555555555555555555555555555555555555 55 5 7 3 7 2222222222222222222 11 7 3 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 33 0 22 9999999999 99 1 111111111111111 0 0
consensus : TAAGGCCAAATAAAA-T-AA-----TA--G-CT-GTGTTT-ACTGTTT-CCCGCCCGACCCT-TGAAAA-AATCC-TC-TG-ACTCAATGCATTTTATTGCTTG---G-----G--G-AGAAAA-A-----TGATGATG-A-AN--TCG-AATAATTGTGTGT-----TTTTCACGATG-CGTGTAGATTTT---------------C-----G--------ATGATGT-ACCGGATGT-TCTTNACTG--G-ACACGGCTAATT-T-ATT---TTCTGTAAAGCAGTCTA---TCGCATTTGGA-TTTTCG-G-TTGTTTT-------------C---------AT---------AGGCGCTT-GGA-CTCACAACATGGCGACATCCAGCGTGTTTTCATGTTCGCCGTGCAGTG-TGTTGGCATTA--TCGTT-TA-AAAAATGCCAACACACGAATACTGAAAATCG--TG-TG-T--CCGTTATTAAT-ACGACGCC----TTTATTTGNTNTATTCGGAAAATATCATA-AAA------AAA----AAAAAT--A-AAT-AAATAAAAT---AA-GC---CT---GACCGACCCAT--TTTTTT--GG-G----GGAGTGAAACAGTAAACAC--A-GCT--A-----TT-AT-TTTATTTGGC
Reference ( gi|1 ) : TGAGGCCAAATAAAA-T-AA-----TA--G-CT-GTGTTT-ACTACTT-CCGGCCCAACCCT-TGAAAA-AATCCTTT-TG-ACTGAATGCATTTTACTACTTG---G-----G--G-GGAAAA-A-----TGATGATG-A-AT--TCA-AATAATTGTGTGT-----TTTTCACAATG-TGTGTACATTTTA--------------C--AATG-CAC---CATGATAT-ACCGGATGT-TCTTGAGAT--G-ACACGGTTAACT-T-ATT---TTCTGTAAAGCAGTCTA---TTGCATTTGGA-TTATCG-G-TTGTTTT-------------C---------AT---------GGGCACTT-GGG-CTCACAACATGGCAACCTCAAGCATGTTTTCATGTTCACCGTGCAGTG-TGTTGGCATTA--TTATT-TA-AAGAATGGCAACACATGAATACTGAAAATTG--TGATG-T--CTGTTATTAAA-ACAACGCC----TTTGTCTGTTTTATTCAGTAAATATCATGCAAA------AAA----AAAAAT--A-AAT-AAATAAAAT---AA-GC---CTTTCGACCAACCCAT--TTTTTTTAGA-G----AGAATGAAACAGCAAACAC--A-ACT--A-----TT-AT-TTTGTTTGGC
gi|5 : TAAGGCCAAATAAAA-T-AA-----TA--G-CT-TTGTTT-ACTGTTT-CCCGTCGAACCTT-TG--AA-AATCC-TC-TG-ACTCGATGCATTTTATTGCTTG---GAAAAAA--A-AGAAGA-A-----TGATGATG-A-AA--TCA-AATGATTGTGTGT-----TTTT--TTATGATGTGTAGATTTT------------------------------ATGATGT-ACCGAATGT-TCTTTATTG--G-ACACGGCTAATT-TCATA---TTCTGTAAAGCAATCTA---TCGCATTTGGA-TTTTCA-G-TTGTTTT-------------C---------ATTGTTTTCAAAGGCACTTAAGA-TTCA-AACAAGGTGACATCTAGAGTGTTTGCATGTTCACTGTGCAGTGTTGTTGGCATTA--TCGTT-TA-GAAAATGCCAACACATGAATAC
gi|3 : TAAGGCAAAATAACT-T-AA-----TA--G-CT-GTGTTT-TCAGTTT-CCTGCCCTACTCT-TGAAGATCATCC-----A-ACTCAATGCCATTCATTGCTTG---G-----GATG-GGGG----------GGTGGGG-G-AT----AGAATAATTGTGTGC-----TTTTCATGATG-CATGTAGATTTTA--------------C--AATG--------------T-ATCGGATGC-TCTTCACTG--G-ACATGACTAATT-T-CCTA--TTCTGTAAAACAGTCTA---TTGCATTTGGC-TTTTTG-G-TTGGTTT-------------T---------A--------------------------AAAACATGGCAACATCCAGCACGTTTTCATGTTCACTGTGCAGTG-TGGTAGTATTA--TCGTTAAA-AAAAATGGCAACACACAACTACTGGAAACAGGATGGTG-T--C--TTATTAAT-ATGACACC----TTTAT--------------------------AA------AAA----AAAAAT--GTAAT-AAA-ATAAT---AACGCAAACT---GACCAATCCAC--TTTTTT-----G----GGAGTGAAAC
gi|9 : TAAGGCCAAATAAAA-T-AA------A--G-CT-ATGCTT-AC--CTTACCG--TTAACCCT-T--CAA-AATCC-TC-TA-ACTCAATACATTTTATT--TTGTCTG-----C--T-AAAGAG-ACCTGTTAACAATGCC-AT--TC--AATAATTGTGTCA-----TTATCACATTG-TGTGTtttatttttatcagctattatttgatttcgcc
gi|10 : taTGAGGTCAAATAAAA-T-AA-----TA--G-CT-GTGTTT-ACTGTGT-CCCACTTGAGCTT-TGAAAA-A---CTTGATGCATTAAAAGT-TTTGATTGGTT----G-----G--A-AAAAAA-A-----TGATGATA-A-Agg
gi|11 : TAAGGCCAAATAAAA-TAAA-----TA--G--T-GTGGTT-ACCATTT-T--GCTCAA------GAAAA-AATatggaatcgcatttggattttctgttgttttctgttg
gi|2 : aaaataaaataaaatgcctaccaacctatAGGTAAAATAAAA-T-TA-----TA--G-CT-GTGTTT-ATT-TTT-CCCGCCTGACCCCATGAAAA---TCCTCC--A-ACTCAATGCATTTTATTACTTG---G-----A--ACAAAAAA-A-----TGATGATG-A-AA--TGG-AATAATTGTGTAT-----TTTTCACCATG-TGAGTAC--------------------C--GG----------ATGATGT-TCCTGATGT-TCATCACTG--G-ACACGGCTAATT-TCATA---TTCTGTAAAGCTGTCTA---TGGTATTTCTA-TTTTCG-G-TTGTTTT-------------CGTTGTTTTCAT---------AGGCGTTT-GGGACTCGCAACATGGTGACATCAAGCGTGTTTTTATGTTCATCATGCAGTG-TGTTGGCAT-----------------------AC---TGAAAACTGAATGTTT--T--TGCT--TTGTTGTT--------TGTC----TT----TGATATAT---GAAAATGTTA---AAA------ACATGTTAATAAT--GTAAT-AAAAACAATAAAAA-GC-------TGACCTACCCAT--TTTT----GAGG----GGAGTGAAACAGTAAAAAC--A-GCT--A-----TT-AT-TTTGTTTGGCtagatttatacactttttgttaattttgattaaatctaatcaa
gi|2 : aAAGCCAAACAAAA-T-AA-----TA--G-CT-GTTTTT-ACTGTTT-C--ACTC--CCCT-CAAAAA-ttt
gi|4 : aaggtaaaataaaattatagctgtgtttatttttcccgcctgaccccatgaaaatcctccaactcaatgcattttattacttggaacaaaaaaatgatgatgaaatggaataattgtgtatttttcaccatgtgagtaccggatgatgttcctgatgttcatcactggacacggctaatttcatattctgtaaagctgtctatggtatttctattttcggttgttttcgttgttttcataggcgtttgggactcgcaacatggtgacatcaagcgtgtttttatgttcatcatgcagtgtgttggcatactgaaaactgaatgtttttgctttgttgtttgtctttgatatatgaaaatgttaaaaacatgttaataatgtaataaaaacaataaaaagctgacctacccaAGCCCAAATAGAA-A-AA-----TA--G--T-GTTTTTTACTGTTT-CACATCTGACCCT-TCAAAA--------------CTCGATGCATTTTATTGCTTG---G-----G--G-GAAAAATG-----TGATGATG-A-AACATCA---TAATTGTGTGT-----TTTTCATGATG-CATGTAGATTTT------------------------------ATGATAT-TCTGAATGT-TCT---GACTGG-ACATGGCTAATT-T--TTGTATTCTTTAAAGCAGTCTATGGTTGC-TTTCAA------G-----GTTTT-------------C---------ATAG-------AGGC-TTT-AGA-CT-----TGTGGATACTTTCAGCAAGCTTTAATGTTCGGCGTGCAGTG-TGCCGGCAATGCCTAATC-TACAAGAAC---------TG-ATACTGTATTTTG--T-----T--TCGTTGTT--------TGTC----TTTGATTAATATATGTATTAGA-ATTTTAAAAAAGTGTGAAA----AAAAATTGA-AATGAAATAAAAT---AA-t
gi|15 : aAGACCAAATAAAA-T-AA-----TACTG--T-GTGTTT-ACTGTTT-C--GCTCCACC----AAAAA-AATaaaagctgactgaacca
gi|12 : aaggtgttaaaagaatctttaaataataaaaaaaaaaaaagcaaccGGCCAAATAAAATT-AA-----T---G-CT-ATGTTT-ACTGTTA-ACAGCCCAACTCT-T--CAA-AATCC--C-TG-ACTCAATGCATTTt
gi|17 : atttcatccattgGCAAAATAAAA-T-AAATGTTTA--GTCTAGTGTTT-ACTGTTT-CCCGCTAAACCCT-Tgtttttgtctaaaaataaaaaatgttgacagatgcaat
gi|8 : aCTGA-TGCATTTAATTGCTTG---G-----G--G--GAAAA-A-----TTATGATG-A-AA--TCG-AAAAACTGTGTGT-----TTTTCACAATG-CATGTAGATTTT------------------------------ATGATGT-ACCCGATGT-TCTTGA-CT--GTACACAGCTAAATGC-ATT---TTCTGTAAAGCAGTCTA---TCGCATTTGGA-TTTTTG-G-Tccaaatctaccagcttgattaattttatt
gi|7 : A-A-----TGATGATG-ACAT--T-G-AATA-------GT-----TTTTAACGTTG-CATGTTGATTTTAAAAATACCGGGTTACGAAATGGCACGGTTATGAAATGACCGGGTACCTCTTGACAG--G-ACATGGCTTATT-T-CAT---TTCTGTAAAGCAGTCTA---TCACATTTGGATTTTTCGTGTTTTTTTT-------------C---------AT---------
gi|6 : GATGATG-CCAT--T-G-AATAAGTGTGTGTGTTTTTTTCCACGATG-CGTGTATATTT----------------------G-C--------GATAT-ACCGGATGT-TCTTGACTG--G-GCATGGCTAA-------------------AGCAGTCCA---TGGCATTTGGG-TTATCG-G-TTGTTTTTTTTTTTTGGTGTC---------TT---------AGGCGCTT-GGGTCTCACATGATGATA---TCTAATTTATTTCCATGTTGACCATGCAGTT-TGTTGGCACTA--TCTTT-TA-AA-ATTGTCAACACACGAATCTCGGAA--------------------ACTAAATACGACGCCATTATTTTTTTTTTTT-TTTGGAAAAAATCATGa
gi|13 : ataaCAGTCTA---TCGCATTTGGA-TTTTTG-G-T
gi|10 : A---TCGCATTTGGA-TTTTCT-G-TTGTTTT-------------C---------gctaacaaatgtagactgaaaagcggatgtgtctgttattaatacaatgctttaataagttttattcgaaaactatcatacagataaa
gi|14 : tgaggtcaaataaaataatagctgtgtttactgtgtcccacttgagctttgaaaaacttgatgcattaaaagttttgattggttggaaaaaaaatgatgataaaatggaTT-GGA-CTCACA---TGGCAACATCCAGCATGTTTTCAGGTTCGCTGTGCAGTG-TGTTGGCATTA--TCGTT-TG-AAAAATGCCAACACATAAATACTGAAAAtgttg
gi|13 : gtgttAACAAATGTAGACTGAAAAGCG---GATG-TGTCTGTTATTAAT-ACAATGCT----TTAATAAGTTTTATTCGAAAACTATCATACAGA------TAA----Accagatgg
gi|16 : cagtctatcgcatttggatttttggtgctA----AAAAAT------T-AAATAAAA----AA-GC---CAATCGACAGACCCAA--TTCTTT--GG-G----GGAGTGAAACATAAAACAC----ACTCAA-----TC-AT-TTTGTTTGGC
gi|15 : A----AATAAT--A-AAA-AAA-AAAA----AA-GC------------AACC-AT--TTTTTT--GG-T----GGAGCGAAACAGTAAACAC--ACAGT--A-----TT-AT-TTTATTTGGctg
gi|11 : aaggtgttaaaagaatctttAAAAT--A-AA----ATAAAAT------GC---CT----ACCAACCTATATTTTTTCTTGA-GC---AAAATG-----GTAACCAC--A--CT--A-----TTTAT-TTTATTTGGCtctt
gi|19 : GACTGACCCAT--TTTTTTTCTG-G----AG--TGAAACAGTAAACAC----ACC--AT----TT-ATATTTGcttatagatttatacactttttgttaattttgattaaatctaatcaa
gi|10 : caaatcaaaatccaactTTTTTCAAA-GCTCAAGTGGGACACAGTAAACAC--A-GCT--A-----TT-AT-TTTATTTGACa
gi|5 : tgagGAAACAGTAAACAA--A-GCT--A-----TT-AT-TTTATTTGGCcttgatgcattaaaagttttgattggttggaaaaaaaatgatgataaaatggaatcgcatttggattttctgttgttttctgttg
gi|17 : taagGAAACAGTAAACACTAG-ACT--AAACATTT-AT-TTTATTTTGCccgtcgaacctttgaaaatcctctgactcgatgcattttattgcttggaaaaaaaagaagaatgatgatgaaatcaaatgattgtgtgtttttttatgatgtgtagattttatgatgtaccgaatgttctttattggacacggctaatttcatattctgtaaagcaatctatcgcatttggattttcagttgttttcattgttttcaaaggcacttaagattcaaacaaggtgacatctagagtgtttgcatgttcactgtgcagtgttgttggcattatcgtttagaaaatgccaacacatgaatac
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AGTAAAAGGTAAAATAAAATAAATGTAATGTTTACCAGTTACCACTTTAAAATCCTCCAACTCGATGCATTT
Unaligned ( gi|20 ): TTTCTGGAATGCAACATTAAGCACACTATTTAATTATTTGGC
Alignments
lowQualScore : 11111 11 111 11 11111 33333333333333 11111111 111111111 11111 444444444444444444444 2222222 5555555555555555555555555555555555 111 555555555555555 3333333333333333333333333333333333333333333333333333 111 1111 11 444444444444444444444 222222 1111 2
lowQualScore : 4 00000 4 4 4 3 22 4 333 88 3 888 44444 55 11111111111111 55 44444444 33 777777777 4 11111 777 4 9999 2 999999999999999999999 5 0 1 5 9999999 0 4 4 4 4 5555555555555555555555555555555555 5 5 000 0 4 8 00 1 2 1 5 99 6 1 3 2 000000000000000 1 1 2222222222222222222222222222222222222222222222222222 555 3333 00 5 88 666666666666666666666 22 111111 2222 0 88888 55
lowQualScore : . ..... . . . . .. . ... .. . ... ..... .. .............. .. ........ .. ......... . ..... ... . .... . ..................... . . . . ....... . . . . . .................................. . . ... . . . .. . . . . .. . . . . ............... . . .................................................... ... .... .. . .. ..................... .. ...... .... . ..... ..
lowQualScore : 0 00000 0 0 0 2 88 0 777 55 3 888 11111 55 00000000000000 00 77777777 99 888888888 4 11111 888 4 4444 9 111111111111111111111 0 4 0 0 5555555 7 0 0 0 0 1111111111111111111111111111111111 7 7 111 7 3 4 99 7 7 4 7 22 7 7 0 3 222222222222222 7 7 4444444444444444444444444444444444444444444444444444 777 7777 44 0 22 222222222222222222222 55 666666 1111 9 99999 99
consensus : TAAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTGTTTCCCGCCCGACCCT-TGAAAAAATCCTCC-GACTCGATGCATT-----TTATT--GCTTG---G-----GA-A-GAAAAATG--ATGATGA----AA--TCGAATAATT---------GTGTG-T-----T---TTTCACGATGC-GTGT----AGAT-------TTT--------CG-ATGATGTACCGGATGT-TCTTGACTGGACACGGCT-AATTT-ATT---TTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTC-G-G-TTGTTTT-------------C---------AT---------AGGCGC-TT-GG-A-CTCACAACATGGCGACATCCAGCGTGTTTTCATGTTCGCCGTGCAGTG-TGTTGGCATTATC--GTT-TAAAAAATGCCAACACACGAATACTGAAAACCG--T-G-TGTCCGTTATTAATACGACGCCTTTA---TTTGTTTTAT-TCGGAAAATATCATA-AAA-----A------AA-----AAA---AAT--A-AAT-A-AAT-AAAAT----AA-GC---C---T---GACCGACCCATTTTTTT--G-GGGGAGCGAAACAGTA----AACACA-C--T--ATT-ATTTTGTTTGGC
Reference ( family-5460 ) : TAAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTGTTTCCCGCCCGACCCT-TGAAAAAATCCTCT-GACTCAATGCATT-----TTATT--GCTTG---G-----GG-A-GAAAAATG--ATGATGA----AN--TCGAATAATT---------GTGTG-T-----T---TTTCACGATGC-GTGT----AGAT-------TTT--------CG-ATGATGTACCGGATGT-TCTTNACTGGACACGGCT-AATTT-ATT---TTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTC-G-G-TTGTTTT-------------C---------AT---------AGGCGC-TT-GG-A-CTCACAACATGGCGACATCCAGCGTGTTTTCATGTTCGCCGTGCAGTG-TGTTGGCATTATC--GTT-TAAAAAATGCCAACACACGAATACTGAAAATCG--T-G-TGTCCGTTATTAATACGACGCCTTTA---TTTGNTNTAT-TCGGAAAATATCATA-AAA-----A------AA-----AAA---AAT--A-AAT-A-AAT-AAAAT----AA-GC---C---T---GACCGACCCATTTTTTT--G-GGGGAGTGAAACAGTA----AACACAGC--T--ATT-ATTTTATTTGGC
gi|1 : TGAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTACTTCCGGCCCAACCCT-TGAAAAAATCCTTTTGACTGAATGCATT-----TTACT--ACTTG---G-----GG-G-GAAAAATG--ATGATGA----AT--TCAAATAATT---------GTGTG-T-----T---TTTCACAATGT-GTGT----ACAT-------TTTACAATGCACC-ATGATATACCGGATGT-TCTTGAGATGACACGGTT-AACTT-ATT---TTCTGTAAAGCAGTCTATTGCATTTGGA-TTATC-G-G-TTGTTTT-------------C---------AT---------GGGCAC-TT-GG-G-CTCACAACATGGCAACCTCAAGCATGTTTTCATGTTCACCGTGCAGTG-TGTTGGCATTATT--ATT-TAAAGAATGGCAACACATGAATACTGAAAATTG--T-GATGTCTGTTATTAAAACAACGCCTTTG---TCTGTTTTAT-TCAGTAAATATCATGCAAA-----A------AA-----AAA---AAT--A-AAT-A-AAT-AAAAT----AA-GC---C---TTTCGACCAACCCATTTTTTTTAG-AGAGAATGAAACAGCA----AACACAAC--T--ATT-ATTTTGTTTGGC
gi|10 : TGAGGTCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTGTGTCCCACTTGAGCTT-TGAAAA----------ACTTGATGCATTAAAAGTT-TT--GATTGGTTG-----GA-A-AAAAAATG--ATGATAA----AA--TGGAAT
gi|10 : ATCGCATTTGGA-TTTTC-T-G-TTGTTTT-------------C---------cgcatttggattttctgttgttttctgttg
gi|11 : tgaggtcaaataaaataatagctgtgtttactgtgtcccacttgagctttgaaaaacttgatgcattaaaagttttgattggttggaaaaaaaatgatgataaaatggaAA---AAT--A-AA-----AT-AAAAT-------GC---C---T----ACCAACCTATATTTTT--T-CTTGAGCAAAATGGTA----ACCACA-C--T--ATTTATTTTATTTGGCtgttg
gi|12 : GGCCAAATAAAATTAA-----T-G-CT-ATGTTT-ACTGTTAACAGCCCAACTCT-T--CAAAATCC-CT-GACTCAATGCATTTG---TTTTT--GTCTA---A-----AA-ATAAAAAATG--TTGActtatagatttatacactttttgttaattttgattaaatctaatcaa
gi|13 : atttcatccattgCAGTCTATCGCATTTGGA-TTTTT-G-G-Tcagatgcaat
gi|13 : TGCTAACAAATGTAGACTGAAAAGCGGAT-G-TGTCTGTTATTAATACAATGCTTTAA---TAAGTTTTAT-TCGAAAACTATCATA-CAG-----A------TA-----AAgctaacaaatgtagactgaaaagcggatgtgtctgttattaatacaatgctttaataagttttattcgaaaactatcatacagataaa
gi|14 : cagtctatcgcatttggatttttgg-TT-GG-A-CTCACA---TGGCAACATCCAGCATGTTTTCAGGTTCGCTGTGCAGTG-TGTTGGCATTATC--GTT-TGAAAAATGCCAACACATAAATACTGAAAACC
gi|15 : gtgttTA-AAA-----G------AATCTTTAAAT--AAT--A-AAA-A-AA--AAAA-----AA-GC----------------AACCATTTTTTT--G-GTGGAGCGAAACAGTA----AACACA-CAGT--ATT-ATTTTATTTGGagatgg
gi|16 : aaggtgtA-----AAA---AAT------T-A-AAT-AAAA-----AA-GC---CAATC---GACAGACCCAATTCTTT--G-GGGGAGTGAAACATAA----AACACA-C--TCAATC-ATTTTGTTTGGCtctt
gi|17 : GCAAAATAAAA-TAAATGTTTAGTCTAGTGTTT-ACTGTTTCCCGCTAAACCCT-T--CCAAATCTACC-AGCTTGATTAATT-----TTATT--ctg
gi|18 : aAAGGTAAAATAAAA-TAA-----ATG-TA-ATGTTT-ACCAGTTACCACT------T-T---AAAATCCTCC-AACTCGATGCATT-----T
gi|19 : agtaa-A-AATCAAAATCC--AA------C---T---GACTGACCCATTTTTTT--T-CTGGAGTGAAACAGTA----AACACA-C--C--AT---TTATATTTG
gi|2 : cAAGGTAAAATAAAA-TTA-----TAG-CT-GTGTTT-ATT-TTTCCCGCCTGACCCCATGAAAA--TCCTCC-AACTCAATGCATT-----TTATT--ACTTG---G-----AACA-AAAAAATG--ATGATGA----AA--TGGAATAATT---------GTGTA-T-----T---TTTCACCATGT-GAGT----A------------C--------CGGATGATGTTCCTGATGT-TCATCACTGGACACGGCT-AATTTCATA---TTCTGTAAAGCTGTCTATGGTATTTCTA-TTTTC-G-G-TTGTTTT-------------CGTTGTTTTCAT---------AGGCGT-TT-GGGA-CTCGCAACATGGTGACATCAAGCGTGTTTTTATGTTCATCATGCAGTG-TGTTGGCATa
gi|2 : ATACTGAAAACTG--A-A-TGT---TT-TTGCTTTGTTGTTTGTC---TTTGATATAT----GAAAATGT--TA-AAA-----ACATGTTAA-----TAATGTAAT--A-AAA-ACAAT-AAAA------A-GC-------T---GACCTACCCATTTTT----GAGGGGAGTGAAACAGTA----AAAACAGC--T--ATT-ATTTTGTTTGGCactgaaaactgaatgtttttgctttgttgtttgtctttgatatatgaaaatgttaaaaacatgttaataatgtaataaaaacaataaaaagctgacctacccatttttgaggggagtgaaacagtaaaaacagctattattttgtttggcttt
gi|3 : aaggtaaaataaaattatagctgtgtttatttttcccgcctgaccccatgaaaatcctccaactcaatgcattttattacttggaacaaaaaaatgatgatgaaatggaataattgtgtatttttcaccatgtgagtaccggatgatgttcctgatgttcatcactggacacggctaatttcatattctgtaaagctgtctatggtatttctattttcggttgttttcgttgttttcataggcgtttgggactcgcaacatggtgacatcaagcgtgtttttatgttcatcatgcagtgtgttggcTAAGGCAAAATAACT-TAA-----TAG-CT-GTGTTT-TCAGTTTCCTGCCCTACTCT-TGAAGA--TCATCC-AACTCAATGCCAT-----TCATT--GCTTG---G-----GA-T-GGGGG--G--GTGGGGG----A---TAGAATAATT---------GTGTG-C-----T---TTTCATGATGC-ATGT----AGAT-------TTT-----------ACAATGTATCGGATGC-TCTTCACTGGACATGACT-AATTT-CCTA--TTCTGTAAAACAGTCTATTGCATTTGGC-TTTTT-G-G-TTGGTTT-------------T---------A----------------------------AAAACATGGCAACATCCAGCACGTTTTCATGTTCACTGTGCAGTG-TGGTAGTATTATC--GTTAAAAAAAATGGCAACACACAACTACTGGAAACAGGATGG-TGTC--TTATTAATATGACACCTTTA---T---------------------------AA-----A------AA-----AAA---AAT--GTAAT-A-AA--ATAAT----AACGCAAAC---T---GACCAATCCACTTTTTT-----GGGAGTGAAACTTTATTTTTAT-CAGC--T--ATT-ATTTGATTTCGCttt
gi|4 : AAGCCCAAATAGAA-AAA-----TAG--T-GTTTTTTACTGTTTCACATCTGACCCT-TCAAAA-----------CTCGATGCATT-----TTATT--GCTTG---G-----GG---GAAAAATGTGATGATGA----AACATC--ATAATT---------GTGTG-T-----T---TTTCATGATGC-ATGT----AGAT-------TTT-----------ATGATATTCTGAATGT-TC-TGACTGGACATGGCT-AATTT--TTGTATTCTTTAAAGCAGTCTATGG---TTG---CTTTCAA-G---GTTTT-------------C---------AT---------AGAGGCTTT-AG-A-CT-----TGTGGATACTTTCAGCAAGCTTTAATGTTCGGCGTGCAGTG-TGCCGGCAATGCCTAATC-TACAAGA---------ACTGATACTG--TATTT--T-G-T-TTCGTTGTT-------TGTCTTTG---ATTAATATATGTATTAGAATTTTAAA-AAAGTGTGA------AA-----AAA---AATTGA-AATGA-AAT-AAAATAAAAAA-G----C---T---GACTGAACCAc
gi|5 : TAAGGCCAAATAAAA-TAA-----TAG-CT-TTGTTT-ACTGTTTCCCGTCGAACCTT-TG--AAAATCCTCT-GACTCGATGCATT-----TTATT--GCTTG---GAAAAAAA-A-GAAGAATG--ATGATGA----AA--TCAAATGATT---------GTGTGTT-----T---TTTTATGAT---GTGT----AGAT-------TTT-----------ATGATGTACCGAATGT-TCTTTATTGGACACGGCT-AATTTCATA---TTCTGTAAAGCAATCTATCGCATTTGGA-TTTTC-A-G-TTGTTTT-------------C---------ATTGTTTTCAAAGGCAC-TTAAG-A-TTCA-AACAAGGTGACATCTAGAGTGTTTGCATGTTCACTGTGCAGTGTTGTTGGCATTATC--GTT-TAGAAAATGCCAACACATGAATAC
gi|6 : G--ATGATGC----CA--TTGAATAAGT---------GTGTG-TGTTTTT---TTCCACGATGC-GTGT----ATAT-------TTG--------CG-ATA---TACCGGATGT-TCTTGACTGGGCATGGCT-AA------------------AGCAGTCCATGGCATTTGGG-TTATC-G-G-TTGTTTTTTTTTTTTGGTGTC---------TT---------AGGCGC-TT-GG-GTCTCACA---TGATGATATCTAATTTATTTCCATGTTGACCATGCAGTT-TGTTGGCACTATC--TTT-T-AAAATTGTCAACACACGAATCTCGGAAA---------------CTA--AATACGACGCCATTATTTTTTTTTTTTT-TTGGAAAAAATCAT
gi|7 : ataaAATG--ATGATGA----CA--TTGAATAGTTTTTAACGTTGCATG-T-----TGATTTTAAAAATACCGGGTTACGAAATGGCACGGTTA--------TG-A-AATG-ACCGGGTACCTCTTGACAGGACATGGCT-TATTT-CAT---TTCTGTAAAGCAGTCTATCACATTTGGATTTTTC-GTGTTTTTTTT-------------C---------AT---------Ag
gi|8 : ATGCATT-----TAATT--GCTTG---G-----GG---GAAAAATT--ATGATGA----AA--TCGAAAAACT---------GTGTG-T-----T---TTTCACAATGC-ATGT----AGAT-------TTT-----------ATGATGTACCCGATGT-TCTTGACTGTACACAGCTAAATGC-ATT---TTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTT-G-G-T
gi|9 : ctgTAAGGCCAAATAAAA-TAA------AG-CT-ATGCTT-ACC--TTACCGTT-AACCCT-TCAAAA--TCCTCT-AACTCAATACATT-----TTATTTTGTCTG---CT----AA-A-GAGACCTG--TTAACAATGCCAT--TC-AATAATT---------GTGTC-A-----T---TATCACATTGT-GTGT----GG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTTCTGGAATGCAACATTAAGCACACTATTTAATTATTTGGC
Alignments
lowQualScore : 11111 11 111 11 11111 22222222222222 111 111111111 11111 444444444444444444444 2222222 5555555555555555555555555555555555 111 111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 1111 11 444444444444444444444 222222 11111 1
lowQualScore : 4 00000 4 4 4 3 22 4 333 88 3 888 44444 55 66666666666666 111 55 33 777777777 4 11111 777 4 9999 2 999999999999999999999 5 0 5 9999999 0 4 4 4 4 5555555555555555555555555555555555 5 5 000 0 4 8 00 1 2 1 5 1 111 5 2 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 555 3333 00 5 88 666666666666666666666 22 111111 1 44444 5 5 88888 1 5
lowQualScore : . ..... . . . . .. . ... .. . ... ..... .. .............. ... .. .. ......... . ..... ... . .... . ..................... . . . ....... . . . . . .................................. . . ... . . . .. . . . . . ... . . ................................................................................................. ... .... .. . .. ..................... .. ...... . ..... . . ..... . .
lowQualScore : 0 00000 0 0 0 2 88 0 777 55 3 444 11111 55 33333333333333 444 55 00 888888888 4 11111 888 4 4444 9 111111111111111111111 0 4 0 5555555 7 0 0 0 0 1111111111111111111111111111111111 7 7 111 7 3 4 99 7 7 4 7 0 777 7 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 777 7777 44 0 22 222222222222222222222 55 666666 4 33333 7 7 99999 4 7
consensus : TAAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTGTTTCCCGCCCGACCCT-TGAAAAAATCCTCC-GACTCGATGCATT-----TTA--TTGCTTG---G-----GA-A-GAAAAATG---ATGATGAA--ATCGAATAATT---------GTGTG-T-----T---TTTCACGATGC-GTGT----AGAT-------TTT--------CG-ATGATGTACCGGATGT-TCTTGACTGGACACGGCT-AATTT-ATT---TTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTC-G-G-TTGTTTT-------------C---------AT---------AGGCGC-TT-GG-A-CTCACAACATGGCGACATCCAGCGTGTTTTCATGTTCGCCGTGCAGTG-TGTTGGCATTATCGTT-TAAAAAATGCC-AACACACGAATACTGAAAACCG--T-G---TG-TCCGTTATTAATACGACGCCTT--T-A---TT--TGT-TTT--AT-TCGGAAAATATCATA-AAA-----A------AA-----AAA---AAT--A-AAT-A-AAT-AAAAT----AA-GC---C---T---GACCGACCCATTTTTTT--G-GGGGAGCGAAACAGTA-----AACAC-A-C--T--A-TTAT-TTTGTTTGGC
Reference ( family-5460 ) : TAAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTGTTTCCCGCCCGACCCT-TGAAAAAATCCTCC-GACTCGATGCATT-----TTA--TTGCTTG---G-----GA-A-GAAAAATG---ATGATGAA--ATCGAATAATT---------GTGTG-T-----T---TTTCACGATGC-GTGT----AGAT-------TTT--------CG-ATGATGTACCGGATGT-TCTTGACTGGACACGGCT-AATTT-ATT---TTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTC-G-G-TTGTTTT-------------C---------AT---------AGGCGC-TT-GG-A-CTCACAACATGGCGACATCCAGCGTGTTTTCATGTTCGCCGTGCAGTG-TGTTGGCATTATCGTT-TAAAAAATGCC-AACACACGAATACTGAAAACCG--T-G---TG-TCCGTTATTAATACGACGCCTT--T-A---TT--TGT-TTT--AT-TCGGAAAATATCATA-AAA-----A------AA-----AAA---AAT--A-AAT-A-AAT-AAAAT----AA-GC---C---T---GACCGACCCATTTTTTT--G-GGGGAGCGAAACAGTA-----AACAC-A-C--T--A-TTAT-TTTGTTTGGC
gi|1 : TGAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTACTTCCGGCCCAACCCT-TGAAAAAATCCTTTTGACTGAATGCATT-----TTA--CTACTTG---G-----GG-G-GAAAAATG---ATGATGAA--TTCAAATAATT---------GTGTG-T-----T---TTTCACAATGT-GTGT----ACAT-------TTTACAATGCACC-ATGATATACCGGATGT-TCTTGAGATGACACGGTT-AACTT-ATT---TTCTGTAAAGCAGTCTATTGCATTTGGA-TTATC-G-G-TTGTTTT-------------C---------AT---------GGGCAC-TT-GG-G-CTCACAACATGGCAACCTCAAGCATGTTTTCATGTTCACCGTGCAGTG-TGTTGGCATTATTATT-TAAAGAATGGC-AACACATGAATACTGAAAATTG--T-GA--TG-TCTGTTATTAAAACAACGCCTT--T-G---TC--TGT-TTT--AT-TCAGTAAATATCATGCAAA-----A------AA-----AAA---AAT--A-AAT-A-AAT-AAAAT----AA-GC---C---TTTCGACCAACCCATTTTTTTTAG-AGAGAATGAAACAGCA-----AACACAA-C--T--A-TTAT-TTTGTTTGGC
gi|10 : TGAGGTCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTGTGTCCCACTTGAGCTT-TGAAAA----------ACTTGATGCATTAAAAGTT---TTGATTGGTTG-----GA-A-AAAAAATG---ATGATAAA--ATGGAAT
gi|10 : ATCGCATTTGGA-TTTTC-T-G-TTGTTTT-------------C---------cgcatttggattttctgttgttttctgttg
gi|11 : tgaggtcaaataaaataatagctgtgtttactgtgtcccacttgagctttgaaaaacttgatgcattaaaagttttgattggttggaaaaaaaatgatgataaaatggaAA---AAT--A-AA-----AT-AAAAT-------GC---C---T----ACCAACCTATATTTTT--T-CTTGAGCAAAATGGTA-----ACCAC-A-C--T--ATTTAT-TTTATTTGGCtgttg
gi|12 : GGCCAAATAAAATTAA-----T-G-CT-ATGTTT-ACTGTTAACAGCCCAACTCT-T--CAAAATCC-CT-GACTCAATGCATTTG---TTT--TTGTCTA---A-----AA-ATAAAAAATG---TTGActtatagatttatacactttttgttaattttgattaaatctaatcaa
gi|13 : atttcatccattgCAGTCTATCGCATTTGGA-TTTTT-G-G-Tcagatgcaat
gi|13 : TGCT-AACAAATGTAGACTGAAAAGCGGAT-G---TG-TCTGTTATTAATACAATGCTTT--A-A---TA--AGT-TTT--AT-TCGAAAACTATCATA-CAG-----A------TA-----AAgctaacaaatgtagactgaaaagcggatgtgtctgttattaatacaatgctttaataagttttattcgaaaactatcatacagataaa
gi|14 : cagtctatcgcatttggatttttgg-TT-GG-A-CTCACA---TGGCAACATCCAGCATGTTTTCAGGTTCGCTGTGCAGTG-TGTTGGCATTATCGTT-TGAAAAATGCC-AACACATAAATACTGAAAACC
gi|15 : gtgttTA-AAA-----G------AATCTTTAAAT--AAT--A-AAA-A-AA--AAAA-----AA-GC----------------AACCATTTTTTT--G-GTGGAGCGAAACAGTA-----AACAC-A-CAGT--A-TTAT-TTTATTTGGagatgg
gi|16 : aaggtgtA-----AAA---AAT------T-A-AAT-AAAA-----AA-GC---CAATC---GACAGACCCAATTCTTT--G-GGGGAGTGAAACATAA-----AACAC-A-C--TCAA-TCAT-TTTGTTTGGCtctt
gi|17 : GCAAAATAAAA-TAAATGTTTAGTCTAGTGTTT-ACTGTTTCCCGCTAAACCCT-T--CCAAATCTACC-AGCTTGATTAATT-----TTA--TTctg
gi|18 : aAAGGTAAAATAAAA-TAA-----ATG-TA-ATGTTT-ACCAGTTACCACT------T-T---AAAATCCTCC-AACTCGATGCATT-----T
gi|19 : agtaa-A-AATCAAAATCC--AA------C---T---GACTGACCCATTTTTTT--T-CTGGAGTGAAACAGTA-----AACAC-A-C--C--ATTTATATTTG
gi|2 : cAAGGTAAAATAAAA-TTA-----TAG-CT-GTGTTT-ATT-TTTCCCGCCTGACCCCATGAAAA--TCCTCC-AACTCAATGCATT-----TTA--TTACTTG---G-----AACA-AAAAAATG---ATGATGAA--ATGGAATAATT---------GTGTA-T-----T---TTTCACCATGT-GAGT----A------------C--------CGGATGATGTTCCTGATGT-TCATCACTGGACACGGCT-AATTTCATA---TTCTGTAAAGCTGTCTATGGTATTTCTA-TTTTC-G-G-TTGTTTT-------------CGTTGTTTTCAT---------AGGCGT-TT-GGGA-CTCGCAACATGGTGACATCAAGCGTGTTTTTATGTTCATCATGCAGTG-TGTTGGCATa
gi|2 : ATACTGAAAACTG--A-A---TG-T---TT-TT--------GCTTTGTT-G---TT--TGT-CTTTGATATATGAAAATGT--TA-AAA-----ACATGTTAA-----TAATGTAAT--A-AAA-ACAAT-AAAA------A-GC-------T---GACCTACCCATTTTT----GAGGGGAGTGAAACAGTA-----AAAAC-AGC--T--A-TTAT-TTTGTTTGGCactgaaaactgaatgtttttgctttgttgtttgtctttgatatatgaaaatgttaaaaacatgttaataatgtaataaaaacaataaaaagctgacctacccatttttgaggggagtgaaacagtaaaaacagctattattttgtttggcttt
gi|3 : aaggtaaaataaaattatagctgtgtttatttttcccgcctgaccccatgaaaatcctccaactcaatgcattttattacttggaacaaaaaaatgatgatgaaatggaataattgtgtatttttcaccatgtgagtaccggatgatgttcctgatgttcatcactggacacggctaatttcatattctgtaaagctgtctatggtatttctattttcggttgttttcgttgttttcataggcgtttgggactcgcaacatggtgacatcaagcgtgtttttatgttcatcatgcagtgtgttggcTAAGGCAAAATAACT-TAA-----TAG-CT-GTGTTT-TCAGTTTCCTGCCCTACTCT-TGAAGA--TCATCC-AACTCAATGCCAT-----TCA--TTGCTTG---G-----GA-T-GGGGG--G---GTGG-GGG--ATAGAATAATT---------GTGTG-C-----T---TTTCATGATGC-ATGT----AGAT-------TTT-----------ACAATGTATCGGATGC-TCTTCACTGGACATGACT-AATTT-CCTA--TTCTGTAAAACAGTCTATTGCATTTGGC-TTTTT-G-G-TTGGTTT-------------T---------A----------------------------AAAACATGGCAACATCCAGCACGTTTTCATGTTCACTGTGCAGTG-TGGTAGTATTATCGTTAAAAAAAATGGC-AACACACAACTACTGGAAACAGGATGG---TG-TC--TTATTAATATGACACCTT--T-A---T--------------------------------AA-----A------AA-----AAA---AAT--GTAAT-A-AA--ATAAT----AACGCAAAC---T---GACCAATCCACTTTTTT-----GGGAGTGAAACTTTATTTTTATCA--G-C--T--A-TTAT-TTGATTTCGCttt
gi|4 : AAGCCCAAATAGAA-AAA-----TAG--T-GTTTTTTACTGTTTCACATCTGACCCT-TCAAAA-----------CTCGATGCATT-----TTA--TTGCTTG---G-----GG---GAAAAATGTG-ATGATGAAACATC--ATAATT---------GTGTG-T-----T---TTTCATGATGC-ATGT----AGAT-------TTT-----------ATGATATTCTGAATGT-TC-TGACTGGACATGGCT-AATTT--TTGTATTCTTTAAAGCAGTCTATGG---TTG---CTTTCAA-G---GTTTT-------------C---------AT---------AGAGGCTTT-AG-A-CT-----TGTGGATACTTTCAGCAAGCTTTAATGTTCGGCGTGCAGTG-TGCCGGC---------------AATGCCTAATCTACAAGAACTG-ATACTG--T-ATTTTGTTTCGTTGTT-------TGTCTT--TGA---TTAATATATGT--AT-T---AGAATTTTAAA-AAAGTGTGA------AA-----AAA---AATTGA-AATGA-AAT-AAAATAAAAAA-G----C---T---GACTGAACCAc
gi|5 : TAAGGCCAAATAAAA-TAA-----TAG-CT-TTGTTT-ACTGTTTCCCGTCGAACCTT-TG--AAAATCCTCT-GACTCGATGCATT-----TTA--TTGCTTG---GAAAAAAA-A-GAAGAATG---ATGATGAA--ATCAAATGATT---------GTGTGTT-----T---TTTTATGAT---GTGT----AGAT-------TTT-----------ATGATGTACCGAATGT-TCTTTATTGGACACGGCT-AATTTCATA---TTCTGTAAAGCAATCTATCGCATTTGGA-TTTTC-A-G-TTGTTTT-------------C---------ATTGTTTTCAAAGGCAC-TTAAG-A-TTCA-AACAAGGTGACATCTAGAGTGTTTGCATGTTCACTGTGCAGTGTTGTTGGCATTATCGTT-TAGAAAATGCC-AACACATGAATAC
gi|6 : G---ATGATGCC--ATTGAATAAGT---------GTGTG-TGTTTTT---TTCCACGATGC-GTGT----ATAT-------TTG--------CG-ATA---TACCGGATGT-TCTTGACTGGGCATGGCT-AA------------------AGCAGTCCATGGCATTTGGG-TTATC-G-G-TTGTTTTTTTTTTTTGGTGTC---------TT---------AGGCGC-TT-GG-GTCTCACA---TGATGATATCTAATTTATTTCCATGTTGACCATGCAGTT-TGTTGGCACTATCTTT-T-AAAATTGTC-AACACACGAATCTCGGAAAC------------------TA--AATACGACGCCAT--T-ATTTTT--TTT-TTT--TT-TTGGAAAAAATCAT
gi|7 : ataaAATG---ATGATGAC--ATTGAATAGTTTTTAACGTTGCATG-T-----TGATTTTAAAAATACCGGGTTACGAAATGGCACGGTTA--------TG-A-AATG-ACCGGGTACCTCTTGACAGGACATGGCT-TATTT-CAT---TTCTGTAAAGCAGTCTATCACATTTGGATTTTTC-GTGTTTTTTTT-------------C---------AT---------Ag
gi|8 : GATGCATT-----TAA--TTGCTTG---G-----GG---GAAAAATT---ATGATGAA--ATCGAAAAACT---------GTGTG-T-----T---TTTCACAATGC-ATGT----AGAT-------TTT-----------ATGATGTACCCGATGT-TCTTGACTGTACACAGCTAAATGC-ATT---TTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTT-G-G-T
gi|9 : ctTAAGGCCAAATAAAA-TAA------AG-CT-ATGCTT-ACC--TTACCGTT-AACCCT-TCAAAA--TCCTCT-AACTCAATACATT-----TTATTTTGTCTGC--T-----AA-A-GAGACCTGTTAACAATGCC--ATTCAATAATT---------GTGTC-A-----T---TATCACATTGT-GTGT----GG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTTCTGGAATGCAACATTAAGCACACTATTTAATTATTTGGC
Alignments
lowQualScore : 11111 11 111 11 11111 22222222222222 111 111111111 11111 444444444444444444444 2222222 5555555555555555555555555555555555 111 111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111 1111 11 444444444444444444444 222222 11111 1
lowQualScore : 4 00000 4 4 4 3 22 4 333 88 3 888 44444 55 66666666666666 111 55 33 777777777 4 11111 777 4 9999 2 999999999999999999999 5 0 5 9999999 0 4 4 4 4 5555555555555555555555555555555555 5 5 000 0 4 8 00 1 2 1 5 1 111 5 2 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 555 3333 00 5 88 666666666666666666666 22 111111 1 44444 5 5 88888 1 5
lowQualScore : . ..... . . . . .. . ... .. . ... ..... .. .............. ... .. .. ......... . ..... ... . .... . ..................... . . . ....... . . . . . .................................. . . ... . . . .. . . . . . ... . . ................................................................................................. ... .... .. . .. ..................... .. ...... . ..... . . ..... . .
lowQualScore : 0 00000 0 0 0 2 88 0 777 55 3 444 11111 55 33333333333333 444 55 00 888888888 4 11111 888 4 4444 9 111111111111111111111 0 4 0 5555555 7 0 0 0 0 1111111111111111111111111111111111 7 7 111 7 3 4 99 7 7 4 7 0 777 7 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 777 7777 44 0 22 222222222222222222222 55 666666 4 33333 7 7 99999 4 7
consensus : TAAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTGTTTCCCGCCCGACCCT-TGAAAAAATCCTCC-GACTCGATGCATT-----TTA--TTGCTTG---G-----GA-A-GAAAAATG---ATGATGAA--ATCGAATAATT---------GTGTG-T-----T---TTTCACGATGC-GTGT----AGAT-------TTT--------CG-ATGATGTACCGGATGT-TCTTGACTGGACACGGCT-AATTT-ATT---TTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTC-G-G-TTGTTTT-------------C---------AT---------AGGCGC-TT-GG-A-CTCACAACATGGCGACATCCAGCGTGTTTTCATGTTCGCCGTGCAGTG-TGTTGGCATTATCGTT-TAAAAAATGCC-AACACACGAATACTGAAAACCG--T-G---TG-TCCGTTATTAATACGACGCCTT--T-A---TT--TGT-TTT--AT-TCGGAAAATATCATA-AAA-----A------AA-----AAA---AAT--A-AAT-A-AAT-AAAAT----AA-GC---C---T---GACCGACCCATTTTTTT--G-GGGGAGCGAAACAGTA-----AACAC-A-C--T--A-TTAT-TTTGTTTGGC
Reference ( family-5460 ) : TAAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTGTTTCCCGCCCGACCCT-TGAAAAAATCCTCC-GACTCGATGCATT-----TTA--TTGCTTG---G-----GA-A-GAAAAATG---ATGATGAA--ATCGAATAATT---------GTGTG-T-----T---TTTCACGATGC-GTGT----AGAT-------TTT--------CG-ATGATGTACCGGATGT-TCTTGACTGGACACGGCT-AATTT-ATT---TTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTC-G-G-TTGTTTT-------------C---------AT---------AGGCGC-TT-GG-A-CTCACAACATGGCGACATCCAGCGTGTTTTCATGTTCGCCGTGCAGTG-TGTTGGCATTATCGTT-TAAAAAATGCC-AACACACGAATACTGAAAACCG--T-G---TG-TCCGTTATTAATACGACGCCTT--T-A---TT--TGT-TTT--AT-TCGGAAAATATCATA-AAA-----A------AA-----AAA---AAT--A-AAT-A-AAT-AAAAT----AA-GC---C---T---GACCGACCCATTTTTTT--G-GGGGAGCGAAACAGTA-----AACAC-A-C--T--A-TTAT-TTTGTTTGGC
gi|1 : TGAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTACTTCCGGCCCAACCCT-TGAAAAAATCCTTTTGACTGAATGCATT-----TTA--CTACTTG---G-----GG-G-GAAAAATG---ATGATGAA--TTCAAATAATT---------GTGTG-T-----T---TTTCACAATGT-GTGT----ACAT-------TTTACAATGCACC-ATGATATACCGGATGT-TCTTGAGATGACACGGTT-AACTT-ATT---TTCTGTAAAGCAGTCTATTGCATTTGGA-TTATC-G-G-TTGTTTT-------------C---------AT---------GGGCAC-TT-GG-G-CTCACAACATGGCAACCTCAAGCATGTTTTCATGTTCACCGTGCAGTG-TGTTGGCATTATTATT-TAAAGAATGGC-AACACATGAATACTGAAAATTG--T-GA--TG-TCTGTTATTAAAACAACGCCTT--T-G---TC--TGT-TTT--AT-TCAGTAAATATCATGCAAA-----A------AA-----AAA---AAT--A-AAT-A-AAT-AAAAT----AA-GC---C---TTTCGACCAACCCATTTTTTTTAG-AGAGAATGAAACAGCA-----AACACAA-C--T--A-TTAT-TTTGTTTGGC
gi|10 : TGAGGTCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTGTGTCCCACTTGAGCTT-TGAAAA----------ACTTGATGCATTAAAAGTT---TTGATTGGTTG-----GA-A-AAAAAATG---ATGATAAA--ATGGAAT
gi|10 : ATCGCATTTGGA-TTTTC-T-G-TTGTTTT-------------C---------cgcatttggattttctgttgttttctgttg
gi|11 : tgaggtcaaataaaataatagctgtgtttactgtgtcccacttgagctttgaaaaacttgatgcattaaaagttttgattggttggaaaaaaaatgatgataaaatggaAA---AAT--A-AA-----AT-AAAAT-------GC---C---T----ACCAACCTATATTTTT--T-CTTGAGCAAAATGGTA-----ACCAC-A-C--T--ATTTAT-TTTATTTGGCtgttg
gi|12 : GGCCAAATAAAATTAA-----T-G-CT-ATGTTT-ACTGTTAACAGCCCAACTCT-T--CAAAATCC-CT-GACTCAATGCATTTG---TTT--TTGTCTA---A-----AA-ATAAAAAATG---TTGActtatagatttatacactttttgttaattttgattaaatctaatcaa
gi|13 : atttcatccattgCAGTCTATCGCATTTGGA-TTTTT-G-G-Tcagatgcaat
gi|13 : TGCT-AACAAATGTAGACTGAAAAGCGGAT-G---TG-TCTGTTATTAATACAATGCTTT--A-A---TA--AGT-TTT--AT-TCGAAAACTATCATA-CAG-----A------TA-----AAgctaacaaatgtagactgaaaagcggatgtgtctgttattaatacaatgctttaataagttttattcgaaaactatcatacagataaa
gi|14 : cagtctatcgcatttggatttttgg-TT-GG-A-CTCACA---TGGCAACATCCAGCATGTTTTCAGGTTCGCTGTGCAGTG-TGTTGGCATTATCGTT-TGAAAAATGCC-AACACATAAATACTGAAAACC
gi|15 : gtgttTA-AAA-----G------AATCTTTAAAT--AAT--A-AAA-A-AA--AAAA-----AA-GC----------------AACCATTTTTTT--G-GTGGAGCGAAACAGTA-----AACAC-A-CAGT--A-TTAT-TTTATTTGGagatgg
gi|16 : aaggtgtA-----AAA---AAT------T-A-AAT-AAAA-----AA-GC---CAATC---GACAGACCCAATTCTTT--G-GGGGAGTGAAACATAA-----AACAC-A-C--TCAA-TCAT-TTTGTTTGGCtctt
gi|17 : GCAAAATAAAA-TAAATGTTTAGTCTAGTGTTT-ACTGTTTCCCGCTAAACCCT-T--CCAAATCTACC-AGCTTGATTAATT-----TTA--TTctg
gi|18 : aAAGGTAAAATAAAA-TAA-----ATG-TA-ATGTTT-ACCAGTTACCACT------T-T---AAAATCCTCC-AACTCGATGCATT-----T
gi|19 : agtaa-A-AATCAAAATCC--AA------C---T---GACTGACCCATTTTTTT--T-CTGGAGTGAAACAGTA-----AACAC-A-C--C--ATTTATATTTG
gi|2 : cAAGGTAAAATAAAA-TTA-----TAG-CT-GTGTTT-ATT-TTTCCCGCCTGACCCCATGAAAA--TCCTCC-AACTCAATGCATT-----TTA--TTACTTG---G-----AACA-AAAAAATG---ATGATGAA--ATGGAATAATT---------GTGTA-T-----T---TTTCACCATGT-GAGT----A------------C--------CGGATGATGTTCCTGATGT-TCATCACTGGACACGGCT-AATTTCATA---TTCTGTAAAGCTGTCTATGGTATTTCTA-TTTTC-G-G-TTGTTTT-------------CGTTGTTTTCAT---------AGGCGT-TT-GGGA-CTCGCAACATGGTGACATCAAGCGTGTTTTTATGTTCATCATGCAGTG-TGTTGGCATa
gi|2 : ATACTGAAAACTG--A-A---TG-T---TT-TT--------GCTTTGTT-G---TT--TGT-CTTTGATATATGAAAATGT--TA-AAA-----ACATGTTAA-----TAATGTAAT--A-AAA-ACAAT-AAAA------A-GC-------T---GACCTACCCATTTTT----GAGGGGAGTGAAACAGTA-----AAAAC-AGC--T--A-TTAT-TTTGTTTGGCactgaaaactgaatgtttttgctttgttgtttgtctttgatatatgaaaatgttaaaaacatgttaataatgtaataaaaacaataaaaagctgacctacccatttttgaggggagtgaaacagtaaaaacagctattattttgtttggcttt
gi|3 : aaggtaaaataaaattatagctgtgtttatttttcccgcctgaccccatgaaaatcctccaactcaatgcattttattacttggaacaaaaaaatgatgatgaaatggaataattgtgtatttttcaccatgtgagtaccggatgatgttcctgatgttcatcactggacacggctaatttcatattctgtaaagctgtctatggtatttctattttcggttgttttcgttgttttcataggcgtttgggactcgcaacatggtgacatcaagcgtgtttttatgttcatcatgcagtgtgttggcTAAGGCAAAATAACT-TAA-----TAG-CT-GTGTTT-TCAGTTTCCTGCCCTACTCT-TGAAGA--TCATCC-AACTCAATGCCAT-----TCA--TTGCTTG---G-----GA-T-GGGGG--G---GTGG-GGG--ATAGAATAATT---------GTGTG-C-----T---TTTCATGATGC-ATGT----AGAT-------TTT-----------ACAATGTATCGGATGC-TCTTCACTGGACATGACT-AATTT-CCTA--TTCTGTAAAACAGTCTATTGCATTTGGC-TTTTT-G-G-TTGGTTT-------------T---------A----------------------------AAAACATGGCAACATCCAGCACGTTTTCATGTTCACTGTGCAGTG-TGGTAGTATTATCGTTAAAAAAAATGGC-AACACACAACTACTGGAAACAGGATGG---TG-TC--TTATTAATATGACACCTT--T-A---T--------------------------------AA-----A------AA-----AAA---AAT--GTAAT-A-AA--ATAAT----AACGCAAAC---T---GACCAATCCACTTTTTT-----GGGAGTGAAACTTTATTTTTATCA--G-C--T--A-TTAT-TTGATTTCGCttt
gi|4 : AAGCCCAAATAGAA-AAA-----TAG--T-GTTTTTTACTGTTTCACATCTGACCCT-TCAAAA-----------CTCGATGCATT-----TTA--TTGCTTG---G-----GG---GAAAAATGTG-ATGATGAAACATC--ATAATT---------GTGTG-T-----T---TTTCATGATGC-ATGT----AGAT-------TTT-----------ATGATATTCTGAATGT-TC-TGACTGGACATGGCT-AATTT--TTGTATTCTTTAAAGCAGTCTATGG---TTG---CTTTCAA-G---GTTTT-------------C---------AT---------AGAGGCTTT-AG-A-CT-----TGTGGATACTTTCAGCAAGCTTTAATGTTCGGCGTGCAGTG-TGCCGGC---------------AATGCCTAATCTACAAGAACTG-ATACTG--T-ATTTTGTTTCGTTGTT-------TGTCTT--TGA---TTAATATATGT--AT-T---AGAATTTTAAA-AAAGTGTGA------AA-----AAA---AATTGA-AATGA-AAT-AAAATAAAAAA-G----C---T---GACTGAACCAc
gi|5 : TAAGGCCAAATAAAA-TAA-----TAG-CT-TTGTTT-ACTGTTTCCCGTCGAACCTT-TG--AAAATCCTCT-GACTCGATGCATT-----TTA--TTGCTTG---GAAAAAAA-A-GAAGAATG---ATGATGAA--ATCAAATGATT---------GTGTGTT-----T---TTTTATGAT---GTGT----AGAT-------TTT-----------ATGATGTACCGAATGT-TCTTTATTGGACACGGCT-AATTTCATA---TTCTGTAAAGCAATCTATCGCATTTGGA-TTTTC-A-G-TTGTTTT-------------C---------ATTGTTTTCAAAGGCAC-TTAAG-A-TTCA-AACAAGGTGACATCTAGAGTGTTTGCATGTTCACTGTGCAGTGTTGTTGGCATTATCGTT-TAGAAAATGCC-AACACATGAATAC
gi|6 : G---ATGATGCC--ATTGAATAAGT---------GTGTG-TGTTTTT---TTCCACGATGC-GTGT----ATAT-------TTG--------CG-ATA---TACCGGATGT-TCTTGACTGGGCATGGCT-AA------------------AGCAGTCCATGGCATTTGGG-TTATC-G-G-TTGTTTTTTTTTTTTGGTGTC---------TT---------AGGCGC-TT-GG-GTCTCACA---TGATGATATCTAATTTATTTCCATGTTGACCATGCAGTT-TGTTGGCACTATCTTT-T-AAAATTGTC-AACACACGAATCTCGGAAAC------------------TA--AATACGACGCCAT--T-ATTTTT--TTT-TTT--TT-TTGGAAAAAATCAT
gi|7 : ataaAATG---ATGATGAC--ATTGAATAGTTTTTAACGTTGCATG-T-----TGATTTTAAAAATACCGGGTTACGAAATGGCACGGTTA--------TG-A-AATG-ACCGGGTACCTCTTGACAGGACATGGCT-TATTT-CAT---TTCTGTAAAGCAGTCTATCACATTTGGATTTTTC-GTGTTTTTTTT-------------C---------AT---------Ag
gi|8 : GATGCATT-----TAA--TTGCTTG---G-----GG---GAAAAATT---ATGATGAA--ATCGAAAAACT---------GTGTG-T-----T---TTTCACAATGC-ATGT----AGAT-------TTT-----------ATGATGTACCCGATGT-TCTTGACTGTACACAGCTAAATGC-ATT---TTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTT-G-G-T
gi|9 : ctTAAGGCCAAATAAAA-TAA------AG-CT-ATGCTT-ACC--TTACCGTT-AACCCT-TCAAAA--TCCTCT-AACTCAATACATT-----TTATTTTGTCTGC--T-----AA-A-GAGACCTGTTAACAATGCC--ATTCAATAATT---------GTGTC-A-----T---TATCACATTGT-GTGT----GG
blockSeqs : T ATGTT T A T G TG A GAA AA A TG AAAAG TT GAAAAAAAA TTA AC GG TTTAACGTT T GTTTT GAT C TACG G GGCACGGTTATG C A TTGTA T A T T TTTTTTTTGGTGTCTT T A GA C A C A G T G AAA T A TGTATTTTGTTTCGTTGTTTGTCTTTGATTAATATATGTATTAGAATTTTAAAAAAGTGTGAAA TGT TGA TG C TC TAACGCAAACT CA GAGG C TTTTT . G AGT T A
blockSeqs : . . . . . G CA . GAA AA T CA TG . GTTGGAA TG . GG . . . . . . G TTGCG . . CATA . . . . CGTTGTTTTCAT . . GT C A A G A . G TG . A CGGATGTGTCTGTTATTAATACAATGCTTTAATAAGTTTTATTCGAAAACTATCATACAGATA T GT A . T TAAAAAAGCT AG TCT C . . . TCA T .
blockSeqs : . . . . . G AA . GAA AA T CA . . AAAAT . . AG . . . . . . G CCGG . . CCTA . . . . CATTGTTTTCAA . . A A A C A A . G TA . A TGAATGTTTTTGCTTTGTTGTTTGTCTTTGATATATGAAAATGTTAAAAACATGTTAA . A T . T AAGCCAATC TG GGT T . . . T . .
blockSeqs : . . . . . A TG . CAA AA T CA . . GAACA . . CA . . . . . . T TTT . . CATA . . . . CAT . . A C . C A G . T T . G AGGATGGTGTCTTATTAATATGACACCTTTATAAAAA . A A . T TCCAACT CT GGG T . . . C . .
blockSeqs : . . . . . G CT . CAA . T CA . . CTAAA . . TG . . . . . . A TTT . . CAT . . . . CAT . . A . . T G A . . . . G . A T . T TGCCT CA TCT T . . . T . .
blockSeqs : . . . . . G TG . C . T TG . . GGAT . . TG . . . . . . G TTT . . ATT . . . . TA . . . . . T T A . . . . . . . . AAGC TG G T . . . T . .
blockSeqs : . . . . . G GA . C . . TA . . GGG . . CG . . . . . . G TTT . . . . . . . . . AGCT .
blockSeqs : . . . . . . A . G . . . . . GGG . . TC . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . C . . . .
blockSeqs : . .
blockSeqCons : ** CG* GGAAA********* TTT****************** CATA*** CATTTTTTCAT*********************** TAACT**************** NNT***
originalCons : TAAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTGTTTCCCGCCCGACCCT-TGAAAAAATCCTCC-GACTCGATGCATT-----TTA--TTGCTTG---G-----GA-A-GAAAAATG---ATGATGAA--ATCGAATAATT---------GTGTG-T-----T---TTTCACGATGC-GTGT----AGAT-------TTT--------CG-ATGATGTACCGGATGT-TCTTGACTGGACACGGCT-AATTT-ATT---TTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTC-G-G-TTGTTTT-------------C---------AT---------AGGCGC-TT-GG-A-CTCACAACATGGCGACATCCAGCGTGTTTTCATGTTCGCCGTGCAGTG-TGTTGGCATTATCGTT-TAAAAAATGCC-AACACACGAATACTGAAAACCG--T-G---TG-TCCGTTATTAATACGACGCCTT--T-A---TT--TGT-TTT--AT-TCGGAAAATATCATA-AAA-----A------AA-----AAA---AAT--A-AAT-A-AAT-AAAAT----AA-GC---C---T---GACCGACCCATTTTTTT--G-GGGGAGCGAAACAGTA-----AACAC-A-C--T--A-TTAT-TTTGTTTGGC
finalCons : TAAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACTGTTTCCCGCCCGACCCT-TGAAAA--TCCTCCG-ACTCGATGCATT-----TTA--TTGCTTGGGAAA---------GAAAAATG---ATGATGAA--ATCGAATAATT---------GTGTG-T-----T---TTTCACGATGC-GTGT----AGATTTT------------------ATGATGTACCGGATGT-TCTTGACTGGACACGGCT-AATTTCATA---TTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTC-G-G-TTGTTTTCATTTTTTCAT-----------------------AGGCGC-TT-GG-A-CTCACAACATGGCGACATCCAGCGTGTTTTCATGTTCGCCGTGCAGTG-TGTTGGCATTATCGTT-TAAAAAATGCC-AACACACGAATACTGAAAACCG--T-G---TG-TCCGTTATTAATACGACGCCTT--T-A---TT--TGT-TTT--AT-TCGGAAAATATCATA-AAA-----A------AA-----AAA---AAT--A-AAT-A-AAT-AAAATAACT----------------GACCGACCCATTTTTTTNNT---GGAGCGAAACAGTA-----AACAC-A-C--T--A-TTAT-TTTGTTTGGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTTCTGGAATGCAACATTAAGCACACTATTTAATTATTTGGC
Alignments
lowQualScore : 11111 11 11111 2222222222 111111111 11111 2222222222222222222 22222222222222222 1 111 666666666666666666666666666666666666666666666666666666666666666 222222222222 222222222 1111 222222222222222 11111 1
lowQualScore : 4 00000 4 4 4 55 00 4 4 2 8888888888 44444 55 0000000000 666 55 33 777777777 11111 777 4 55 9999 66 3333333333333333333 66 5 0 77 1 6 3 4 99999999999999999 5 1 5 0 4 8 00 1 2 1 5 1 111 5 2 222222222222222222222222222222222222222222222222222222222222222 1 5 8 444444444444 333333333 77 2222 5 777777777777777 1 999 888 22222 5 5 66 66 0 5
lowQualScore : . ..... . . . .. .. . . . .......... ..... .. .......... ... .. .. ......... ..... ... . .. .... .. ................... .. . . .. . . . . ................. . . . . . . .. . . . . . ... . . ............................................................... . . . ............ ......... .. .... . ............... . ... ... ..... . . .. .. . .
lowQualScore : 0 00000 0 0 0 66 33 0 0 5 7777777777 11111 55 3333333333 444 55 00 888888888 11111 888 4 33 4444 11 2222222222222222222 99 0 4 22 4 6 2 0 00000000000000000 7 4 7 7 3 4 99 7 7 4 7 0 777 7 3 222222222222222222222222222222222222222222222222222222222222222 8 2 0 111111111111 555555555 99 7777 0 000000000000000 1 999 999 55555 0 0 99 99 0 0
consensus : TAAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACT-GTTTCCCGCCCGACC-CT-TNAAAA--TCCTCC-GACTCGATGCATT-----TTA--TTGCTTGG--GGAA----GAAAAATG---ATGATGAA--ATCGAATAATT---------GTGTGT-----T---TTTC-ACGATGC-GTGT----A--GATT------TTA----------TGA--TGTACCGGATGT-TCTTGACTGGACACGGCTAA-TTTCATATTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTCGGTTGTTTTC-ATT-TTTT-----CATAGGCGC-TT-GGA-CTCACAACATGGCGACATCCAGCGTGTTTTCATGTTCGCCGTGCAGTG-TGTTGGCATTATCGTT-TAAAAAATGCC-AACACACGAATACTGAAAACCG--T-G---TG-TCCGTTATTAATACGACGCCTT--T-A---TT--TGT-TTT--AT-TCGGAAAATATCATA-AAA-----A------AAAA-----A---AAT--AAAT-A-AAT-AAAAT--AA-----CT---GACCGACCCATTTTTTTNNTGGAG--TGAAACAGTA-----AACAC-A-C--T--A-TTAT-TTTGTTTGGC
Reference ( family-5460 ) : TAAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACT-GTTTCCCGCCCGACC-CT-TGAAAA--TCCTCC-GACTCGATGCATT-----TTA--TTGCTTGG--GAAA----GAAAAATG---ATGATGAA--ATCGAATAATT---------GTGTGT-----T---TTTC-ACGATGC-GTGT----A--GATT------TTA----------TGA--TGTACCGGATGT-TCTTGACTGGACACGGCTAA-TTTCATATTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTCGGTTGTTTTC-ATT-TTTT-----CATAGGCGC-TT-GGA-CTCACAACATGGCGACATCCAGCGTGTTTTCATGTTCGCCGTGCAGTG-TGTTGGCATTATCGTT-TAAAAAATGCC-AACACACGAATACTGAAAACCG--T-G---TG-TCCGTTATTAATACGACGCCTT--T-A---TT--TGT-TTT--AT-TCGGAAAATATCATA-AAA-----A------AAAA-----A---AAT--AAAT-A-AAT-AAAAT--AA-----CT---GACCGACCCATTTTTTTNNTGGAG--CGAAACAGTA-----AACAC-A-C--T--A-TTAT-TTTGTTTGGC
gi|1 : TGAGGCCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACT-ACTTCCGGCCCAACC-CT-TGAAAAAATCCTTTTGACTGAATGCATT-----TTA--CTACTTGG--GGG-----GAAAAATG---ATGATGAA--TTCAAATAATT---------GTGTGT-----T---TTTC-ACAATGT-GTGT----A--CATT------TTACAATGCACCATGA--TATACCGGATGT-TCTTGAGATGACACGGTTAA-CTT-ATTTTCTGTAAAGCAGTCTATTGCATTTGGA-TTATCGGTTGTTTTC-AT--------------GGGCAC-TT-GGG-CTCACAACATGGCAACCTCAAGCATGTTTTCATGTTCACCGTGCAGTG-TGTTGGCATTATTATT-TAAAGAATGGC-AACACATGAATACTGAAAATTG--T-GA--TG-TCTGTTATTAAAACAACGCCTT--T-G---TC--TGT-TTT--AT-TCAGTAAATATCATGCAAA-----A------AAAA-----A---AAT--AAAT-A-AAT-AAAAT--AAGC---CTTTCGACCAACCCATTTTTTTTAGAGAGAATGAAACAGCA-----AACACAA-C--T--A-TTAT-TTTGTTTGGC
gi|10 : TGAGGTCAAATAAAA-TAA-----TAG-CT-GTGTTT-ACT-GTGTCCCACTTGAGC-TT-TGAAAA----------ACTTGATGCATTAAAAGTT---TTGATTGGTTGGAA----AAAAAATG---ATGATAAA--ATGGAAT
gi|10 : ATCGCATTTGGA-TTTTCTGTTGTTTTC-cgcatttggattttctgttgttttctgttg
gi|11 : tgaggtcaaataaaataatagctgtgtttactgtgtcccacttgagctttgaaaaacttgatgcattaaaagttttgattggttggaaaaaaaatgatgataaaatggaA-----A---AAT--AAA-----AT-AAAAT--GC-----CT----ACCAACCTATATTTTTTCTTGAG--CAAAATGGTA-----ACCAC-A-C--T--ATTTAT-TTTATTTGGCtgttg
gi|12 : GGCCAAATAAAATTAA-----T-G-CT-ATGTTT-ACT-GTTAACAGCCCAACT-CT-TCAAAA--TCC-CT-GACTCAATGCATTTG---TTT--TTGTCTAA--AAAT----AAAAAATG---TTGActtatagatttatacactttttgttaattttgattaaatctaatcaa
gi|13 : atttcatccattgCAGTCTATCGCATTTGGA-TTTTTGGTcagatgcaat
gi|13 : TGCT-AACAAATGTAGACTGAAAAGCGGAT-G---TG-TCTGTTATTAATACAATGCTTT--A-A---TA--AGT-TTT--AT-TCGAAAACTATCATA-CAG-----A------TAAA-----gctaacaaatgtagactgaaaagcggatgtgtctgttattaatacaatgctttaataagttttattcgaaaactatcatacagataaa
gi|14 : cagtctatcgcatttggatttttgg-TT-GGA-CTCACA---TGGCAACATCCAGCATGTTTTCAGGTTCGCTGTGCAGTG-TGTTGGCATTATCGTT-TGAAAAATGCC-AACACATAAATACTGAAAACC
gi|15 : gtgttAA-----A------AGAATCTTTA---AAT--AA-T-A-AAA-AAAAA--AA----------AAGCAACC-ATTTTTTTGGTGGAG--CGAAACAGTA-----AACAC-A-CAGT--A-TTAT-TTTATTTGGagatgg
gi|16 : aaggtgtt------AAAA-----A---ATT--AAAT-A-AAA-AAGCC--AA-----TC---GACAGACCCAATTCTTTGGGGGAG--TGAAACATAA-----AACAC-A-C--TCAA-TCAT-TTTGTTTGGCtctt
gi|17 : GCAAAATAAAA-TAAATGTTTAGTCTAGTGTTT-ACT-GTTTCCCGCTAAACC-CT-TCCAAA--TCTACC-AGCTTGATTAATT-----TTA--TTctg
gi|18 : aAAGGTAAAATAAAA-TAA-----ATG-TA-ATGTTT-ACCAGTT---------ACCACT-TTAAAA--TCCTCC-AACTCGATGCATT-----T
gi|19 : agtaa-A-AATCAAAATCCAA-----CT---GACTGACCCATTTTTTTTCTGGAG--TGAAACAGTA-----AACAC-A-C--C--ATTTATATTTG
gi|2 : cAAGGTAAAATAAAA-TTA-----TAG-CT-GTGTTT-ATT--TTTCCCGCCTGACC-CCATGAAAA--TCCTCC-AACTCAATGCATT-----TTA--TTACTTGG--AACA----AAAAAATG---ATGATGAA--ATGGAATAATT---------GTGTAT-----T---TTTC-ACCATGT-GAGT----ACCGG----------A----------TGA--TGTTCCTGATGT-TCATCACTGGACACGGCTAA-TTTCATATTCTGTAAAGCTGTCTATGGTATTTCTA-TTTTCGGTTGTTTTC-GTTGTTTT-----CATAGGCGT-TTGGGA-CTCGCAACATGGTGACATCAAGCGTGTTTTTATGTTCATCATGCAGTG-TGTTGGCATa
gi|2 : ATACTGAAAACTG--A-A---TG-T---TT-TT--------GCTTTGTT-G---TT--TGT-CTTTGATATATGAAAATGT--TA-AAA-----ACATGTTAATA-----ATGTAAT--AAAA-ACAAT-AAAA---AG-----CT---GACCTACCCATTTTTG-AGGGGAG--TGAAACAGTA-----AAAAC-AGC--T--A-TTAT-TTTGTTTGGCactgaaaactgaatgtttttgctttgttgtttgtctttgatatatgaaaatgttaaaaacatgttaataatgtaataaaaacaataaaaagctgacctacccatttttgaggggagtgaaacagtaaaaacagctattattttgtttggcttt
gi|20 : aaggtaaaataaaattatagctgtgtttatttttcccgcctgaccccatgaaaatcctccaactcaatgcattttattacttggaacaaaaaaatgatgatgaaatggaataattgtgtatttttcaccatgtgagtaccggatgatgttcctgatgttcatcactggacacggctaatttcatattctgtaaagctgtctatggtatttctattttcggttgttttcgttgttttcataggcgtttgggactcgcaacatggtgacatcaagcgtgtttttatgttcatcatgcagtgtgttggcTTTCTGGAA--TGCAACATTA-----AGCAC-A-C--T--A-TTTA-ATTATTTGGCttt
gi|3 : TAAGGCAAAATAACT-TAA-----TAG-CT-GTGTTT-TCA-GTTTCCTGCCCTACT-CT-TGAAGA--TCATCC-AACTCAATGCCAT-----TCA--TTGCTTGG--GATG----GGGGGGTG---G----GGG--ATAGAATAATT---------GTGTGC-----T---TTTC-ATGATGC-ATGT----A--GATT------TTA----------CAA--TGTATCGGATGC-TCTTCACTGGACATGACTAA-TTTCCTATTCTGTAAAACAGTCTATTGCATTTGGC-TTTTTGGTTGGTTTT-A--------------------------------AAAACATGGCAACATCCAGCACGTTTTCATGTTCACTGTGCAGTG-TGGTAGTATTATCGTTAAAAAAAATGGC-AACACACAACTACTGGAAACAGGATGG---TG-TC--TTATTAATATGACACCTT--T---------------------------------ATA-AAA-----A------AAAA-----ATGTAAT--AAAA-T-AAT-AACGCA-AA-----CT---GACCAATCCACTTTTTTG--GGAG--TGAAACTTTATTTTTATCA--G-C--T--A-TTAT-TTGATTTCGC
gi|4 : AAGCCCAAATAGAA-AAA-----TAG--T-GTTTTTTACT-GTTTCACATCTGACC-CT-TCAAAA-----------CTCGATGCATT-----TTA--TTGCTTGG--GGGA----AAAATGTG---ATGATGAAACATC--ATAATT---------GTGTGT-----T---TTTC-ATGATGC-ATGT----A--GATT------TTA----------TGA--TATTCTGAATGT-TC-TGACTGGACATGGCTAATTTTTGTATTCTTTAAAGCAGTCTAT----------------GGTTGCTTTCAAGG-TTTT-----CATAGAGGCTTT-AGA-CT-----TGTGGATACTTTCAGCAAGCTTTAATGTTCGGCGTGCAGTG-TGCCGGC---------------AATGCCTAATCTACAAGAACTG-ATACTG--T-ATTTTGTTTCGTTGTT-------TGTCTT--TGA---TTAATATATGT--AT-T---AGAATTTTAAA-AAAGTGTGA------AAAA-----A---AATTGAAATGA-AAT-AAAAT--AAAAAAGCT---GACTGAACCAc
gi|5 : TAAGGCCAAATAAAA-TAA-----TAG-CT-TTGTTT-ACT-GTTTCCCGTCGAACC-TT-TGAAAA--TCCTCT-GACTCGATGCATT-----TTA--TTGCTTGG--AAAAAAAAGAAGAATG---ATGATGAA--ATCAAATGATT---------GTGTGT-----T---TTTTTATGATG---TGT----A--GATT------TTA----------TGA--TGTACCGAATGT-TCTTTATTGGACACGGCTAA-TTTCATATTCTGTAAAGCAATCTATCGCATTTGGA-TTTTCAGTTGTTTTC-ATTGTTTT-----CAAAGGCAC-TTAAGA-TTCA-AACAAGGTGACATCTAGAGTGTTTGCATGTTCACTGTGCAGTGTTGTTGGCATTATCGTT-TAGAAAATGCC-AACACATGAATAC
gi|6 : G---ATGATGCC--ATTGAATAAGT---------GTGTGTGTTTTT---TTCC-ACGATGC-GTGT----A--TATT------T-G----------CGA--TATACCGGATGT-TCTTGACTGGGCATGGCTAA----------------AGCAGTCCATGGCATTTGGG-TTATCGGTTGTTTTT-TTT-TTTTGGTGTCTTAGGCGC-TT-GGGTCTCACA---TGATGATATCTAATTTATTTCCATGTTGACCATGCAGTT-TGTTGGCACTATCTTT-T-AAAATTGTC-AACACACGAATCTCGGAAAC------------------TA--AATACGACGCCAT--T-ATTTTT--TTT-TTT--TT-TTGGAAAAAATCAT
gi|7 : ataaAATG---ATGATGAC--ATTGAATAGTTTTTAACGTTGCATGT-----TGATTTTA-AAAATACCGGGTTACGA--AATGGCACGGTTA----------TGAAATG-ACCGGGTACCTCTTGACAGGACATGGCTTA-TTTCAT-TTCTGTAAAGCAGTCTATCACATTTGGATTTTTCG--TGTT-----TT-TTTT-----CATAg
gi|8 : GATGCATT-----TAA--TTGCTTGG--GG------GAAAAATT---ATGATGAA--ATCGAAAAACT---------GTGTGT-----T---TTTC-ACAATGC-ATGT----A--GATT------TTA----------TGA--TGTACCCGATGT-TCTTGACTGTACACAGCTAA-ATGCATTTTCTGTAAAGCAGTCTATCGCATTTGGA-TTTTTGGT
gi|9 : ctTAAGGCCAAATAAAA-TAA------AG-CT-ATGCTT-ACC---TTACCGTT-AACC-CT-TCAAAA--TCCTCT-AACTCAATACATT-----TTATTTTGTCTGC--TAAA----GAGACCTGTTAACAATGCC--ATTCAATAATT---------GTGTCA-----T---TATC-ACATTGT-GTGT----G--G