lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111 111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333333333333333333333 1111111111 111111111
lowQualScore : 22 1 11 111 1 1 1 1 1 222 88888888888888888 1 11 00000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 33333333333333333 1 11 1 111 11111 11 888888888888888888888888888888888888 11111 1111111 1111 555555555555555555555555555555555555 1111 1111111 11111 1111 111111111111111111111111111111111111111111111111111111111111111111 1 111111111111 11 2222 111111111111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 33333 11 33 11 1 1 2222222222 1 1 22 222222 111 1 444444 1 1 0000000000000000000000000000 7777777777 22 1 000000000 1 1 66666666666 11111 4444444444444444 1 333 1 88888888888888 111 11111 333333333333333333 1 111111 11111 2 1 1 2222222 2 111
lowQualScore : 33 6 1 0 33 22 99 0 11 000 5 5 6 7 6 7 5 5 3 222 1 66666666666666666 3 55 55555555555555555555555555555555555555555555555555555555555555555555555555555555 7 88 88 0 2 3 22222222222222222 4 5 3 33 1 6 111 3 0 1 4 22222 4 00 0 999999999999999999999999999999999999 5 22222 66 9 5 2 7777777 4 4 8888 4 111111111111111111111111111111111111 66 88 6 2222 6666666 22222 66 777 0000 888888888888888888888888888888888888888888888888888888888888888888 0 0 4 1 555555555555 11 0000 6 777777777777 3 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 55555 0 0 7 88 00 55 3 3 7 5555555555 2 3 4 2 22 666666 777 2 77 4 6 0 8 333333 5 4 4 3 6 6 5 3 1111111111111111111111111111 5555555555 77 5 888888888 4 6 0 0 77777777777 8 6 1 66666 6 0 9999999999999999 7 6 666 6 4 2 3 44444444444444 000 1 1 55555 3 333333333333333333 5 0 777777 5 77 0 55555 5 5 3 3 0 4 8 0 0 3 0 3333333 0 6 1 0 666 4 3
lowQualScore : .. . . . .. .. .. . .. ... . . . . . . . . . ... . ................. . .. ................................................................................ . .. .. . . . ................. . . . .. . . ... . . . . ..... . .. . .................................... . ..... .. . . . ....... . . .... . .................................... .. .. . .... ....... ..... .. ... .... .................................................................. . . . . ............ .. .... . ............ . .............................................................................................................................................................................. .. ..... . . . .. .. .. . . . .......... . . . . .. ...... ... . .. . . . . ...... . . . . . . . . ............................ .......... .. . ......... . . . . ........... . . . ..... . . ................ . . ... . . . . .............. ... . . ..... . .................. . . ...... . .. . ..... . . . . . . . . . . . ....... . . . . ... . .
lowQualScore : 77 0 4 6 00 00 66 6 66 000 7 0 0 0 0 0 0 7 7 777 0 33333333333333333 3 77 33333333333333333333333333333333333333333333333333333333333333333333333333333333 0 55 55 5 5 0 00000000000000000 0 0 0 88 0 0 777 3 6 7 7 99999 7 00 3 666666666666666666666666666666666666 7 55555 99 0 4 4 3333333 4 4 2222 4 111111111111111111111111111111111111 11 33 0 3333 2222222 55555 11 111 6666 666666666666666666666666666666666666666666666666666666666666666666 6 1 4 0 111111111111 33 0000 7 555555555555 7 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 55 55555 8 2 0 33 77 00 3 3 3 0000000000 0 3 0 5 88 222222 555 5 22 0 5 0 2 000000 0 0 0 0 0 0 0 0 0000000000000000000000000000 0000000000 55 0 000000000 0 5 0 0 55555555555 0 7 0 22222 7 3 2222222222222222 3 7 777 7 0 7 7 77777777777777 000 9 4 00000 7 333333333333333333 0 1 000000 0 99 1 77777 7 7 3 9 9 3 6 8 4 8 6 6666666 0 0 4 8 222 0 0
consensus : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTNTTATTATCTGTTATGCC----ATAT-------AGTC-TTTTACCAGGT---TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTACAACACCCCTTCGTAAATGAAGACTGCGTNGGNGCCATNAAATNGTTTAGAATTGTTAGTNATGATCCTTGCAGTTTNNACTGTTNTAGTTGCTCNGAAATGACTTTGANATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAAAATTAT---ATAAGCATACTGATGGAAAGTGATTTAGTA----GAGGTTAC-NATTTACAAACC----------GT----------------AC------GA-CAAAACACA-----TAAGACAGGA--TAATATTNTATTTTAACTAACTT-T-TATTT---AGAATG-T-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTCTCCAAGGTGAT-AGATAT-------TTGT-----ATA-CAT-T-TCA----AA---------G---------A------------A------------GG--TTAAATGCTG-------TATTTCAAAGACAGTTCAATCTCCAAG-ATGAT-C--TACA----TAGATGTAC-C-T-GA----AGTT---CAATCTCCA----------------ATT---------------------TAA----CA--T--GTCCAAGAT-GATCTTAAGAAA----NAG-TC----------GAGTCTTTTAAATTGAA---TTAATCATA-T--GGTAT-TTTT---TTA-AAT-ATAGTAAAGCCT---TC-------AAGTTCGATTACCT-ATTGGAAAAAATCGTCTAA--AAGTATAAATTTG--AAAAA-GAAAGAAA-AAA-AAGTTTATATATTTCATA-A-AAATGTTCAATAATCTCAAG-GTGATCTATNTATATTTTCCATGAAAAT-GTTCCGAT----CGAT---TATCTNCGAGCTGACGNATANA-TTTTAAATACATGCATGCAACCATGCGTAGACTAAGCANAGAATCCATNANTCACCCTCGCTACAGCCTAGATATCACGAANAAACCTTCGTTTGAACATTATTTTGGNATATGCATGTACAACGGGGTCACTGTAGGTTTCCATACCATTTTCTAATCTCTTTAAATAACCCGGCATACAAGA---ATATAATAAGANTGAAGTTTGAAG-CG-AAGATAAC---AACAGT-AA-TT-AAGTA---A-GGAAA-GAATAAAGATAACAAGAATGA----A-----------GTATGG-AAAGAAATTA-AGNTAACAAGATTGAAGTATNAATTGAAAA---A-A--AA---AAA---GATTACAAG-ACAAAGTNAGCATGG-AAAGT-A---AAC--C-AG-ATNACAAG----AATTGA-GTATG--AAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTGGTTA-TA---GATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTANAGA
Reference ( gi|1 ) : TTACCCCTTCTGGCGGTCCGATTTTTATTACATTTTTGGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCAAGACTGTGCAATCGGTAATTACCAGCGTCACATAACGCGGTAGGTATATAAAATTCATTGTTATAATTTGTTATG------ATAT-------AGTC-TTTTACTAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAAACAACACTCCTTCGTAAATGAAGACTGCGCCGACGCCATAAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTAAACTG-----------CAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-AT---ACAAGCATACTGATGGAAAGTGATTTATTA----GATGTTAC-AATTTACAAACC----------GT----------------AT------AA-CAAAACACA-----TAAGACAGGA--TAGTATTCTGTTTTAACTAACTT-T-TATTA---AGAATG-T-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTTTCCAAGGTGAT-AACTAT-------TTGT-----ATA-CAT-T-TCA----AA---------G---------A------------A------------GA--TTAAATGCTG-------TATTTCAAAGATAGTTCAATCTCCAAG-ATAAT-C--TACA----TAAATGTAC-C-T-GA----AATT---CAATCTCCA----------------ATT---------------------TAA----CA--T--ATCCAAGCT-GATCTTAAGAAA----TAG-TT----------GAGTCTTCTAAATTAAA---TTAGTGGTAGT--GGTAT-TTTT---TTA-AATCATAGTAAAGTCT---TC-------AAGTTCAATTACCT-TTAAGAAAAAATCATATAA--AAGTATAAATTTGAAAAAAAAGAAAGAAA-AAA-AAGTTTATATATTTTATATATAAATGTTCAATAATCTCAAG-GTGATCTATATATATTTTCCATGAAAAG-GTTCCGAT----CCAT---TATCTCCAGGCTGACGAATACA-TTTTAGATACATG---GC-ACCATGCGTAGACTAAGAATAGAATCCATTATTCATCCTCATTACAGCCTAGATCTCACGAAAAAA----------AAC-TTA---TGG-----GCATGTACAACGGGGTCACTATAGG----------ATTTTCTA--CTATTTAAATAACCCGGCATACATGATACATGTAATAAGATTGAAGTTTGAAG-CG-AAGATAAA---GATATTCAA-TT-AAGTA---A-GGAAA-GAATAAAGATAACAAGAATGA----G-----------GTATAG-AACGCAATTA-AGTTTACAAGATTGAAGTATTAATTGAAAA---ACAGTAA--CAAA---GATTACAAGAACAAAGTAAGTATGG-AAAGTAA---AAC--C-AG-ATTACAAG----AATTGA-GTATG--AAGTAAGT----AA-GGAAA-ACAAGATTGAAGTATAAACTCAGCATGGAAAGAATCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAATAAAAATTGGTTT-TA---GATACCAGGAAACACAGTATGAGTATTGT--GTTCTAGTATAAATT
gi|11 : TTACCCCCGCTAGCGGTCCGAATTTTA-----------ACATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTAACCAGCGTCACATAACGCGATAGGGATATAAAATTCCTTATT---ATCTGTTATGCC----ATACACAGTGAAGTCTTTTTACCAGGT---
gi|19 : gaTTATCCCCGTTAGGGGTCCGATTTGTATTACATTTTTA----------TT---TTT-TCGATTTCTCAGAAAATTATGTAACGGCTTAATTGCTCCAGATTGTGCAAgtgggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|20 : gtTTATCCCCGCCAGAGGTCCGATTTTTATTACATTTTTTGCATTTTTA-TT---TTT-TCGATTTCTCAGGA
gi|18 : tTTACCCCT-CTAGGGGTCCGAATTTTATTACATAATTAGGATTTTT-TTTATGTTT-TCGATTTCTCAAAAA
gi|23 : agtttgttgcgaatttatagtttagtcccTTACCCCCGCTAGGGGTCCGATTTTTATAAC
gi|22 : agtTACCCCG-CTAGGGGTCCGACTTTTATTACA
gi|21 : gtttattccccTCTAGGGGTCCGATTTT----ACATTTTTGGCAGTTTTA-TT---TTT-TCGATTTCT
gi|16 : gcTTTATTT---TTTGTCGATTTCTCAGAAAATTATGTAACGGTTTGATTGCTCCAGATTATACAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATATAATTCTTTTTTATTATTTGGTATG------TAAT-------AGTC-TTTTACCAGGT---tg
gi|2 : TTT---TTT-TCGATTTCTTAGAAAATTTTGTAACGGTTTAATTGCTCCAGATAGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTAACTGTTATACTATATATAT-------AGTC-TTTTA--AGGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTACAACACCTTTTCGTAAATGAAGACTGCATCGGAGCCATCAAATTGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTTGTAGTTGCTCTGAAATGA-TTTGAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-AT---ATAAACATAGTGATGGAAAGTGATTTATTA----GATGTTAC-AGTTTACAAACC----------GT----------------AC------AA-CAAAACACA-----TAAGACAGGA--TAATATTATGTTTTAACTAACTTAT-TATTT---AGAATG-T-------T-------AA----A--AG--------A-TACTTC--ACAGTTC-ATTCTCCAAGGTGAT-AACTAT-------TTGT-----ATA-CAT-T-TCA----AA---------G---------A------------A------------GG--TTAAATGCTG-------TAGTTCAAAGATAGTTCAATCTCCAAG-ATGAT-CTATATA----TAGATGTAC-C-T-GA----AATT---TATTTTCAA----------------ATT---------------------TAA----CA--T--GTCCAAGAT-GATCTTAAGAAA----AAG-TC----------CAGTCTTTTAGATTAAA---TTA-TCATAGT--GGTAT-TTTT---TT------ATA-TAAAGCCT---TC-------AAGTTTAATTACCT-ATTGGAAAAAATTGTCTAA--AAGTATACATTTG--AAAAAATAAATAAATAAA-AAGTTTATATTTTTTATAGATAAATGTTCAATCACCTCAAG-GTGATCTATTTATATTTTCCATGAAAAT-GTTCCGAT----AAAT---TATCTCCAAGCTGACGAATATATTTTTACGTACATG---AC-ACCATGCGTAAACTAAGCAAAGAATCCATTAGTCACTCTCACTATAGCCTAGATATCACGAACAAACCTTCGTTTGAACATTATTTTGGTATATACATATACAACAGGGTCATTATAGGTTTCCATACCATTTTCTAATCTCTTTAAATAACCCGGCATACA------ATATAATAAGATTGCAGTTTGAAG-CG-AAGATAAC---GAT----AA-TC-AAGTA---A-GTAAA-GAATAACGATTACAAGAATGG----A-----------GTATGG-AAAGAAATTA-ACTTAACGAGATTGAAGTATTAATTGACAA-------------AAA---GATTACAAGAACAAAGTTAGCATGG--AAGT-A---AAC--C-AG-ATAACAAG----ACTTGC-GTATG--AAGTAAGT----AA-GGAAA-ACAAGATAAGAGTAAAAAGTCAGCATGGAAAGAAGC-AAGATAAAAAGATTGGAGTAGGTATGGAAAGAATGAATAAGACTTGGTTA-TA---GATAACAAGAAACACAGTATGAGTATTGT--GT
gi|3 : tAATATACAACACTCCTTCGTAAATGAAGACTGCGTAGGCGCCATGAAATGGTTTAAAATTGTTAGTGATAATCCTTGCAGTTTTG-CTGTTT--------CAGAAATGACTTTAACATATTAA--AGAAATGAAATAATAAAGTGTGTGTCAGATGTAGCCTGGAAAAT-GT---GTAAGCAAACTTGTGGAAAGTTTATTATTA----TATATTAC-AATGTACAATCC----------GT----------------AC------AA-CAAAACACA-----TAAGACAGGA--TATTATTCTGTTTTAACTAACTT-T-AGTTT---AGAATG-T-------C-------AA----A--AA--------T-TATTTC--TCAGTTC-AGTCTTTATGGTGAT-AAATAT-------TTGT-----GAA-CAT-T-TCA----AA---------G---------------------------------------------------------------AAGACAGTTAAATCTCCAAA-ATGAT-C--TAGA----TAGATATAC-C-T-GA----AGTT---CAATCTCCA----------------ATTTTTCATTCCTGCACGTGTATTTAAAATACA--T--GTCCAAGAT-GATCTTAAGAAAATTTCAG-TT----------GTTTTTTTTTAATTAAA---T-AATCTTTTTTAGGTAT-TTTTCTTTTA-AAT-------AAGCGT---TC-------AAATTAGATAACCT-ATTGGAAAAAATCGTCTAA--AAGTATAAATTTGAAAAAA--GAAAGAAA-AAA-AAGTTTATATATTTCA---A-AGATGTC----AATCTCAAG-GTGATCTATATATATTTTCCATGAAAAT-GTTCCGAT----CGAT---GTTCTACAAACAGATGAATACA-TTTTAAATACATGCATGCAACCATGCGTAGACTAAGCATAGAATCCATAATTTACCCTCGCTACAGCCTAGATATCACAAAAAAATCTTCGTTTGAACATTATTTTGGGATATGCATGTACAACGGGGTCACTGTAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGACATACAAGA------TAATAAGATTGAAGTTTGAAG-CG-AAGATACT---AAT----AA-TT-AAGTA---A-GGAAA-GAATAAAGATAAAAAGAATGA----A-----------GTATGG-AAATAAATTA-AGTTAACAAGATTGAAGTATCAATTGAA---------------AAA---AATTACAAGGACTAAGAAAGTATGG-AATGC-A---AAC-----G-AT--CTAG-------TGA-GTATG--GAGCAAGT----AA-GGAAA-ACAAGATTGGATTATAAAGTCAGCGTTGAAAGAAGCAATGTTAAACAGATTGGCGTAAGTATGGAGAGAATGAAGAAAAATTTATTA-TA---GATA-AAAGAAACACAGTACGAGTATTGT--GTGCTAGGATAGAgatcaaataga
gi|12 : tcatcttcttcATTAAGTAGAACTGAAATAATAAAGTTTGTATCAGATGTAACCCGGAACATTAT---ACAAGCATACTTATGGAATGTGATTTAGTA----GAGGTTAC-GTATCACAAACC----------GT----------------aat
gi|9 : aatcaaagtgtttaaagcactaaaacctcggtaaacactg--AGAAATGTAATAATAAAGTTTGAGTCATATGTCGCCC--AAAAC-ATTTTATAAGTATACTGATGGTAAGTGATTTAGTA----CAGGTTAC-TATGTACAAACCTTTGTTTGTTGT----------------ATGTGTGCAA-CAAAATACA-----TAAGACAGGA--TA-----CTATTTTA------TT-T-TATTA----GAATG-T-------TTAACTGTAA----A--AT--------AATATTTC--ACAATTG-AGTCTCCAAGATGAT-AGATAT-------TTTT-----ATA-CAT-------------------------------------------------------------------------------GTTTCAAAGAAAGTTTAATCTCCCAGTAAAAT-G--T-TA----TACATGTAT-T-TCGAAGACAGTTGTACAATCTCCtatttgttgtatgggtacagtgataagcagtgagtgacctaatgtaataaggcaggatgctattttatttta
gi|6 : ccaagtGTCAGATGTAGCCCGGAATATTAT---ATAAGCGAACTGATGGAAAGTGTTTAAGTA----GATAGTAT-TGTTGACAAACC----------GTTGTTTGTTGTATGGGTAC------AA-CAAAATACA-----TAAGATTCGA--TAAGATTTGATTTTAACTAA--T-T-TATTG---AGAATG-T-------T-------AA----A--TTTTAAACCAA-TATTAA--ACAGTTC-TGTCTCCAAGGTGAT-AGATTT-------TTGC-----ATA-TAT-T-TCG----AA---------A---------A------------------------------TAAATGTTA-------TATTTCAAAGACAATTAAATTTCCTAA-ATGAA-T--TACATGTGTACATGTACACAT-AA----AATT---CAATTTCCAAGTTTATTGTGCGTATATT---------------------TAA----AAACT--CTCCAAGAA-AATCTAAATATA----TAGATTTAAAAAGAAAAAGTCTT-TATATTGAA---TTA------------TAT-CTTT---TTG-AA----AA-AAAGTCCCAGTC-------GAGTTCTATTATCTATT--GGAAAAATCATcagatgctctacataggtata
gi|5 : T---ATAAGCACACTGATGGAAAGTGATTTAGTA----TAGGTTACTAATTAATAAACC----------GTTTTTGTTGT-------AT------GGGTGCAACACAATCTTTAAGACAAGG--TAATATTTTATTTTAAATG--TT-TGTATTT---TGACTG-T-------T-----------------T--------A--ACTTA--ACAGTCA-AATCTTCAAGGTGAT-AG--AT-------T-GTGAACGATA-TAT-T-TCATGGAAA---------GTTTAATCTCA------------A------------AG--TTAAATAATA-------TATTTCAAAGACAGTTCAATATCTAAG-ATAAT-C--ATTA----TAG--GTA----T-GA----GGT------AT-----------------------------------------------G----CA--TGGATTCAATCTAGAAGTTAAAAA------AG-TC----------GAGT-TTTTAAATTGAACATTTAAAGATA------TATATAAT---TTATAATTAT-GTA---TCT---TTAAAATTGAAGTCCAGTTATCC-GTAGACAAATATAACATAATGAAGTATGAAAATG--AAGTATGAAAGCAA-AAATAACCTTA-ACA----ATATGGAAAGAATTAATAATATTAAGAGTGActcattacttatattatgtatttcaaagaa
gi|15 : ataaacatttAAGCATATTGATGGATATTTATC-ATTAAGCTGAGGTTAT-TATTTACAAACCTTTCTTT---GT-----------------T------GG---ATGCGCA-----CGAGAAAGTACATAATATTTTATTTTGACTAACAT-T-TATTT---AGAATG-TTTAACTGT-------AA----A--ATA-------A-CATTTC--ATAGCTC-AGTCTCC-AGATGAT-A
gi|17 : ctttg----------------AT------AA-CAAAATACA-----TAAGGCAGAA--TTACATTTTATGTT-------CT-T-TGTTG---ATAGTGTT-------T-------AATTGTA--AA--------A-TATTTT--AAAGTTA-AGTCTCCAAGTTGATAAACCAT-------TTtat
gi|13 : AATACA-----CGAGACAAGA--TAATATTGTATGTTAACTAACTT-T-TATTT---AGAATG-T-------T-------TA----A------------C-TGTTTC--ATAGTT--AGTCTCCAAAATGAT-ACATAT-------TTGT-----GTATTAT-TCTCA----AA---------A---------ACGTTCAATCGACA------------GG--TTAAACGTTA-------TACATCAAAGACAGCTCAGTCTACAAG-ATGAT-A--TACA----TAGATATAC-cat
gi|8 : GTATTATATTTTA-------T-T-TGTTGCACATATTG-T-------T-------AA----ATAAT--------G-TATTTCTAAGAATTCCAATCTCCAAGATAAT---CTACATGTACATTGT-----ATA-TATCT-TTA----AA---------A---------A------------ATGCCCAGTTACCGACTTTAAAT-CTG-------TTTTTCAAAGACAGTTCAATCTCCACG-ATGATAC--T-----------TTTA----T-GA----AAAT-----ATCTCCA------------------T---------------------TAA----
gi|4 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatGT-----ATA-GAC-T-TTA----AATACAAAATTG---------A------------A------------TA--TTAA-TGCTGAATCATACATCTCAAAGAAAGTTAAATCTCCAAA-ATGAC-A--TATA----TAaccatgattatctcctagcttacgtataaattttaaatataaaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
gi|8 : tctccatgaaaaaagtttcgatcaattatctgcgagttgac--TTAAATAATG-------TATTTCTAAGA-ATTCCAATCTCCAAG-ATAAT-C--TACA----Tttcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggatagtaagaatgaagacagtaagaatgaattaaggtcgtaagacaaatagaacagtaatgaagcaggaagtaaacaaaggtaacatgaataaagtatgaacctaagattacaagtaagtatggaaatagcaaagtaaatattgaaaaagcatagactacaagaatgaaggatgaagttagtactgaaaaacaagattagagtataagtaagcatcgaaagaagcaaagataacatggttgaagcaagtagaaaagaacgaagaacggttcgtagctgataacaaaaaacatagtttgagtattg
gi|8 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgtattatattttatttgttgcacatattgATACTTTT-ATGAAAAT-ATCTCCATTAAACCATGATTATCTCCTAGCTTACGTATAAA-TTTTAAATATAgtacattgtatatatctttaaaaaatgcccagttaccgactttaaatctgtttttcaaagacagttcaatctccacgatgatacttttatgaaaatatctccattaaaccatgattatctcctagcttacgtataaattttaaatataaaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
gi|4 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgtattatattttatttgttgcacatattgttaaataatgtatttctaagaattccaatctccaagataatctacatgtacattgtatatatctttaaaaaatgcccagttaccgactttaaatctgtttttcaaagacagttcaatctccacgatgTCTCCATGAAAAAAGTTTCGAT----CAAT---TATCTGCGAGTTGACGTATAGA-CTTTAAATACAaaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
gi|7 : AACAAAAATAAAATAGGAAG-CA-CATATAAC---AACAATCAAGTT-AA-TA---T-AGAAA-GAAAAAAGATAACAAGAATAA----AATATGAAGTTTGTATGG-AAGGAAATAA-AAATAACAAGATTGAAGTATGAAGTAAAAATGAAAAGAAA--CAAA---GATTACAAG-----------CATGG-AAAG-AA---AAA--T-AG-ATTACAAT----A-TTGAAGTATG--AATTAAGTCCGGAA-AGAAACACAAGATTGAAGTATAAATT-AACATGGAAAAAAGAAAATATATGAAAATTGGAGTATGCATGGAAATAATGAG-AAAGATTCGTAG-AA---GATAAAAAGAAATACGGTTTGAATG-TGTAAGCCATAGTAGAAAaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggatagtaagaatgaagacagtaagaatgaattaaggtcgtaagacaaatagaacagtaatgaagcaggaagtaaacaaaggtaacatgaataaagtatgaacctaagattacaagtaagtatggaaatagcaaagtaaatattgaaaaagcatagactacaagaatgaaggatgaagttagtactgaaaaacaagattagagtataagtaagcatcgaaagaagcaaagataacatggttgaagcaagtagaaaagaacgaagaacggttcgtagctgataacaaaaaacatagtttgagtattg
gi|4 : ttgttataaatatgcatttcgacatatgtaaagaaccaaAGTAAGAATGAA--TTAAGGTCGTAAGACAAATAGAACAGT-AA-TG-AAGCA---G-GAAGT-AAACAAAGGTAACATGAATAA----A-----------GTAT-G-AAC----CTA-AGATTACAAG--T-AAGTA-----TGGAAA----TAG-----------------------CAAAGTAAATATTG-AAA---A---AGCA-T-AG-ACTACAAG----AATGAA-GGATG--AAGTTAGT----ACTGAAAA-ACAAGATTAGAGTATAAG-TAAGCATCGAAAGAAGCAAAGATAACATGGTTGAAGCAAGTA-GAAAAGAACGAAGAA----CGGTTCGTAGCTGATAACAAAAAACATAGTTTGAGTATTGgt
gi|14 : tctccatgaaaaaagtttcgatcaattatctgcgagttgacgtatagactttaaatacaaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggatagtaagaatgaagacAA-TTGAAGTATAAATGGAAATAAACTAAGATAACAAGAACAACATAG-----------GTATGGTAAAG-AATTATAGATAACAAGAATGAAGTATTAACTGAAAG---A-A--AA--AAAA---GATTGT-AGTAC-AAGTCATCATGG----GGAA---AAC--A-AATATAACAAG-----ATTGG-G
gi|10 : gtgtagaaagaaaccaaa-AAATA---A-TGAAA-GAATAAAGACAACAACAATGC----A-----------GTAT-G-AA-GAATTTA-AGTTAAAAAGATCGAAATATTTATTGAAAA---AAATTAAATTAAACCTGATAACAA----AAATTGAGTATG---AAGTAAGGGAAT--CAAG-ATTG-AAGTATAAAGTCA-GCATGGAAAG-AAGC----AA-AGATA-AAATGATTGGAGTA-------AGTATGGGAAGA---AAGAATAAAAAggtg
gi|14 : AAAATTGAAGTATAAATGGAAAT---A----AA--CTAA---GATAACAAGAACAACATAGGTATGGTAAAG------AATTAT-AG-ATAACAAG----AATGAA-GTATT--AACTGA------AA-GAAAA-AAAAGATTGTAGTACAAG-TCATCATGGGGAAAA-CAAATATAACAAGATTGGGGctggttatagataacaagaaacacagtatgagtatttttctgataggatagaaat
gi|10 : gtgtagaaagaaaccaAAATTA---AAC--C-TG-ATAACAAA----AATTGA-GTATG--AAGTAAG---------GGAA-TCAAGATTGAAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAATGATTGGAGTAAGTATGGGAAGAAAGAATAAAAACTGGTTA-TA---GATAACAAGAAACACAGTATGAGTATT-T---TTCTGATAgtg
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 11 444444444444 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999 7777777777 11 11 777777777777777777777777777777777777777777 11111 1111111 44444444444444444444444444444444 11111 1111 888888888888888888888888888888888888888888888888888888 11111111 2222 11 111111111111111111111111111111111111111111111111111 44444444444444444 11111 11111 111 555555555555 111 55555555555555 111111 11 111 1 111 1 1 22222222 1 2222 111 1 1 1 33 4444444444444444 333333333333 22222222222 1111111 44444444444444444444444444444444444 111 111 11111 11
lowQualScore : 0 2 0 00 11 11 888 5 5555 99 3 444444444444 0 22 22222222222222222222222222222222222222222222222222222222222222222222222222222222 0 0 1 1 1 1 1 999 3333333333 1 6 0 1 11 5 22 888 2 1 5 444444444444444444444444444444444444444444 4 11111 66 1 1111111 4 4 777 88888888888888888888888888888888 55 66 55 3 4 1 777 22222 5 66 5 5 0000 333333333333333333333333333333333333333333333333333333 88888888 888 77 0000 33 77 999 9 999999999999999999999999999999999999999999999999999 3 1 0 99999999999999999 0 88888 00000 444 0 111111111111 8 444 66666666666666 444444 4 1 5 33 777 0 444 0 0 3 22 22222222 5 3 5 8 8 0 3 1 1111 8 444 66 1 4 1 1 0 6 5 1 1 1 0 1 2 7 7 4 0 7 00 5555555555555555 1 3 8 8 777777777777 1 77777777777 4 66 1 22 4444444 66666666666666666666666666666666666 77 333 777 6 4 5 33333 5 5 0 0 1 2 0 2 33 1 1 0
lowQualScore : . . . .. .. .. ... . .... .. . ............ . .. ................................................................................ . . . . . . . ... .......... . . . . .. . .. ... . . . .......................................... . ..... .. . ....... . . ... ................................ .. .. .. . . . ... ..... . .. . . .... ...................................................... ........ ... .. .... .. .. ... . ................................................... . . . ................. . ..... ..... ... . ............ . ... .............. ...... . . . .. ... . ... . . . .. ........ . . . . . . . . .... . ... .. . . . . . . . . . . . . . . . . . . .. ................ . . . . ............ . ........... . .. . .. ....... ................................... .. ... ... . . . ..... . . . . . . . . .. . . .
lowQualScore : 7 2 1 44 33 66 888 0 0000 22 2 888888888888 0 88 00000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 0 0 0 0 0 333 0000000000 0 7 7 0 00 0 66 888 5 0 0 444444444444444444444444444444444444444444 4 11111 11 0 5555555 0 0 000 99999999999999999999999999999999 55 55 55 9 0 0 888 55555 0 99 0 0 6666 222222222222222222222222222222222222222222222222222222 00000000 888 99 0000 66 99 777 6 666666666666666666666666666666666666666666666666666 2 4 8 00000000000000000 8 00000 00000 000 8 222222222222 0 000 22222222222222 444444 6 4 6 88 555 0 000 0 0 2 22 88888888 6 2 6 0 0 0 2 0 2222 0 666 44 0 6 0 0 8 7 3 0 0 0 7 0 0 3 3 0 7 3 77 2222222222222222 0 2 0 0 222222222222 0 11111111111 3 00 9 77 4444444 44444444444444444444444444444444444 11 777 666 6 9 7 66666 7 7 4 7 0 5 3 5 88 0 0 7
consensus : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTATCTGTTATGCTATAT-------A----GTC-TTTTACCAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATACAACACTCCTTCGTAAATGAAGACTGCGTCGGCGCCATNAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTANACTGTT--------TCAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAANATTATATAAGCATACTGATGGAAA---GTGATTTAGTAGANGTTACNATTTA-CAAACC----------------GT----------------AC---GA-CGAA-ACACA-----TAAGACAGGA--TAATATTNTATTTTAACTAACTT-T-TATT---TAGAATGT-------T-------AAA--AT--------A-TATTTC--ACAGTTC-AGTCTCCAAGGTGAT--ANA-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGATC--TACA----TA--GATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCGAGTCTTTTAAATTAAA---TTAATCGTAGT---GGTAT-TTTT---TTAA--AT-ATA----TAAAGCCT---TCAAGTTCAATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTTCATA-G-A--AATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAN-GTTCCGATCGATTATCTCCAAGCTGACGAATANATTTTAAATACATGCATGC-ACCATGCGTAGACTAAGCATAGAATCCATTATTCACCCTCGCTACAGCCTAGATATCACGAAAAAACCTTCGTTTGAACATTATTTTGG-ATATGCATGTACAACGGGGTCACTATAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGGCATAC---AAGA---AT----ATAATAAGATTGAAGTTTGAAG-CG-AAGATAAC---GACA-TC-AATTAAGTAAGGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGTTAACAAGATTGAAGTATNAA-T-----TGAAAAA----AA--AAAGATTACAA-GAACAAAGTAAGTATGG-AAAGT-AAAC--CAGATNACAAGAATTGA-GTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTNGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTATAAA
Reference ( family-544 ) : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTNTTATTATCTGTTATGCCATAT-------A----GTC-TTTTACCAGGT---TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTACAACACCCCTTCGTAAATGAAGACTGCGTNGGNGCCATNAAATNGTTTAGAATTGTTAGTNATGATCCTTGCAGTTTNNACTGTTNTAGTTGCTCNGAAATGACTTTGANATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAAAATTATATAAGCATACTGATGGAAA---GTGATTTAGTAGAGGTTACNATTTA-CAAACC----------------GT----------------AC---GA-CAAA-ACACA-----TAAGACAGGA--TAATATTNTATTTTAACTAACTT-T-TATT---TAGAATGT-------T-------AAA--AT--------A-TATTTC--ACAGTTC-AGTCTCCAAGGTGAT--AGA-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGATC--TACA----TA--GATGTA--C-C-TGAAGTTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAN----AGTCGAGTCTTTTAAATTGAA---TTAATCATA-T---GGTAT-TTTT---TTAA--AT-ATA---GTAAAGCCT---TCAAGTTCGATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTTCATA-A-A--AATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAT-GTTCCGATCGATTATCTNCGAGCTGACGNATANATTTTAAATACATGCATGCAACCATGCGTAGACTAAGCANAGAATCCATNANTCACCCTCGCTACAGCCTAGATATCACGAANAAACCTTCGTTTGAACATTATTTTGGNATATGCATGTACAACGGGGTCACTGTAGGTTTCCATACCATTTTCTAATCTCTTTAAATAACCCGGCATAC---AAGA---AT----ATAATAAGANTGAAGTTTGAAG-CG-AAGATAAC---AACAGT--AATTAAGTAAGGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGNTAACAAGATTGAAGTATNAA-T-----TGAAAAA----AAA-AAAGATTACAA-G-ACAAAGTNAGCATGG-AAAGT-AAAC--CAGATNACAAGAATTGA-GTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTGGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTANAGA
gi|1 : TTACCCCTTCTGGCGGTCCGATTTTTATTACATTTTTGGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCAAGACTGTGCAATCGGTAATTACCAGCGTCACATAACGCGGTAGGTATATAAAATTCATTGTTATAATTTGTTATG--ATAT-------A----GTC-TTTTACTAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAAACAACACTCCTTCGTAAATGAAGACTGCGCCGACGCCATAAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTAAACTG-----------CAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-ATACAAGCATACTGATGGAAA---GTGATTTATTAGATGTTACAATTTA-CAAACC----------------GT----------------AT---AA-CAAA-ACACA-----TAAGACAGGA--TAGTATTCTGTTTTAACTAACTT-T-TATT---AAGAATGT-------T-------AAA--AT--------A-TATTTC--ACAGTTC-AGTTTCCAAGGTGAT--AAC-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGA--------------TT-------------AAATGC------TGTATTTCAAAGATAGTT---CAATCTCCAAGATAATC--TACA----TA--AATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TATCCAAGCTGATCT---T-------------AAGAAAT----AGTTGAGTCTTCTAAATTAAA---TTAGTGGTAGT---GGTAT-TTTT---TTAA--ATCATA---GTAAAGTCT---TCAAGTTCAATTACCTTTAAGAAAAAATCATATAA--AAGTATAAATTTGAAAAAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTTTATATATA--AATGTTCAATAATCTCAA-G-GTGAT-CTATATAT----AT-TTTCCATGAAAAG-GTTCCGATCCATTATCTCCAGGCTGACGAATACATTTTAGATACATG---GC-ACCATGCGTAGACTAAGAATAGAATCCATTATTCATCCTCATTACAGCCTAGATCTCACGAAAAAA----------AAC-TTA---TGG-----GCATGTACAACGGGGTCACTATAGG----------ATTTTCTA--CTATTTAAATAACCCGGCATAC---ATGATACAT----GTAATAAGATTGAAGTTTGAAG-CG-AAGATAAA---GATATTC-AATTAAGTAAGGAAAGAATAAAGATAACAAGAATGAG-----------GTATAGAACGCAATTAAGTTTACAAGATTGAAGTATTAA-T-----TGAAAAACAGTAAC-AAAGATTACAA-GAACAAAGTAAGTATGG-AAAGTAAAAC--CAGATTACAAGAATTGA-GTATGAAGTAAGT----AA-GGAAA-ACAAGATTGAAGTATAAACTCAGCATGGAAAGAATCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAATAAAAATTGGTTTTAGATACCAGGAAACACAGTATGAGTATTGT--GTTCTAGTATAAA
gi|10 : AAATAATGAAAGAATAAAGACAACAACAATGCA-----------GTATG--AAGAATTTAAGTTAAAAAGATCGAAATATTTA-T-----TGAAAAA----A-------ATTA-----------------------AATT-AAAC--CTGATAACAAAAATTGA-GTATGAAGTAAG---------GGAA-TCAAGATTGAAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAATGATTGGAGTAAGTATGGGAAGAAAGAATAAAAACTGGTTATAGATAACAAGAAACACAGTATGAGTATTtt
gi|11 : TTACCCCCGCTAGCGGTCCGA-----A------TTTTAACATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTAACCAGCGTCACATAACGCGATAGGGATATAAAATTCC---TTATTATCTGTTATGCCATACACAGTGAA----GTCTTTTTACCAGGT---tttctgataggatagaaat
gi|12 : gaATTAAGTAGAACTGAAATAATAAAGTTTGTATCAGATGTAACCCGGAACATTATACAAGCATACTTATGGAAT---GTGATTTAGTAGAGGTTACGTATCA-CAAACC----------------GT----------------gtgggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|13 : aatcaaagtgtttaaagcactaaaacctcggtaaacactgA-ATACA-----CGAGACAAGA--TAATATTGTATGTTAACTAACTT-T-TATT---TAGAATGT-------T-------TAA------------C-TGTTTC--ATAGTT--AGTCTCCAAAATGAT--ACA-TAT---TTGT-----GTATTA--T-TCTCA----AAA---------ACGTTCAATCGACAGG--------------TT-------------AAACGT------TATACATCAAAGACAGCT---CAGTCTACAAGATGATA--TACA----TA--GATATA--C-tatttgttgtatgggtacagtgataagcagtgagtgacctaatgtaataaggcaggatgctattttatttta
gi|14 : -----------GTGTAGAAAGAAACCAA-------AAATTGAAGTATAAA-T-----GGAAATA----AAC-TAAGATAACAA-GAACAACATAGGTATGGTAAAG---AATTATAGATAACAAGAATGAA-GTATTAACTGA------AA-GAAAA-AAAAGATTGTAGTAC-AAGTCATCATGGGGA-AAACAAATATAACAAGATTGGGG
gi|15 : AAGCATATTGATGGATATTTATCATTAAGCTGAGGTTATTATTTA-CAAACC----------------TT----------------TCTTTGT-TGGATGCGCA-----CGAGAAAGTACATAATATTTTATTTTGACTAACAT-T-TATT---TAGAATGTTTAACTGT-------AAA--ATA-------A-CATTTC--ATAGCTC-AGTCTCC-AGATGAT--ATA-Tgtg
gi|16 : ctttgTTTATTT---TTTGTCGATTTCTCAGAAAATTATGTAACGGTTTGATTGCTCCAGATTATACAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATATAATTCTTTTTTATTATTTGGTATG-TA-AT-------A----GTC-TTTTACCAGGT---
gi|17 : A-CAAA-ATACA-----TAAGGCAGAA--TTACATTTTATGTT-------CT-T-TGTT---GATAGTGT-------TTAATTGTAAA--A-----------TATTTT--AAAGTTA-AGTCTCCAAGTTGAT--AAACCAT---TT
gi|18 : ataTTACCCCT-CTAGGGGTCCGAATTTTATTACATAATTAGGATTTTT-TTTATGTTT-TCGATTTCTCAAAAAcat
gi|19 : agtttgttgcgaatttatagtttagtcccTTATCCCCGTTAGGGGTCCGATTTGTATTACATTTTTA----------TT---TTT-TCGATTTCTCAGAAAATTATGTAACGGCTTAATTGCTCCAGATTGTGCAA
gi|2 : gtTTT---TTT-TCGATTTCTTAGAAAATTTTGTAACGGTTTAATTGCTCCAGATAGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTAACTGTTATACTATAT-------ATATAGTC-TTTTA--AGGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTACAACACCTTTTCGTAAATGAAGACTGCATCGGAGCCATCAAATTGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTTGTAGTTGCTCTGAAATGA-TTTGAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-ATATAAACATAGTGATGGAAA---GTGATTTATTAGATGTTACAGTTTA-CAAACC----------------GT----------------AC---AA-CAAA-ACACA-----TAAGACAGGA--TAATATTATGTTTTAACTAACTTAT-TATT---TAGAATGT-------T-------AAA--AG--------A-TACTTC--ACAGTTC-ATTCTCCAAGGTGAT--AAC-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTAGTTCAAAGATAGTT---CAATCTCCAAGATGATC--TATA----TATAGATGTA--C-C-TGAAATTTATTTTCAA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCCAGTCTTTTAGATTAAA---TTA-TCATAGT---GGTAT-TTTT---TTA-------TA----TAAAGCCT---TCAAGTTTAATTACCTATTGGAAAAAATTGTCTAA--AAGTATACATTTG---AAA-AA-ATAAATAAATAAA-AAGTTTATATTTTTTATA-G-ATAAATGTTCAATCACCTCAA-G-GTGAT-CTATTTAT----AT-TTTCCATGAAAAT-GTTCCGATAAATTATCTCCAAGCTGACGAATATATTTT---TACGTACATGACACCATGCGTAAACTAAGCAAAGAATCCATTAGTCACTCTCACTATAGCCTAGATATCACGAACAAACCTTCGTTTGAACATTATTTTGGTATATACATATACAACAGGGTCATTATAGGTTTCCATACCATTTTCTAATCTCTTTAAATAACCCGGCATAC------A---AT----ATAATAAGATTGCAGTTTGAAG-CG-AAGATAAC---GA---T--AATCAAGTAAGTAAAGAATAACGATTACAAGAATGGA-----------GTATGGAAAGAAATTAACTTAACGAGATTGAAGTATTAA-T-----TG----A----CAA-AAAGATTACAA-GAACAAAGTTAGCATGG--AAGT-AAAC--CAGATAACAAGACTTGC-GTATGAAGTAAGT----AA-GGAAA-ACAAGATAAGAGTAAAAAGTCAGCATGGAAAGAAGC-AAGATAAAAAGATTGGAGTAGGTATGGAAAGAATGAATAAGACTTGGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GT
gi|20 : tTTATCCCCGCCAGAGGTCCGATTTTTATTACATTTTTTGCATTTTTA-TT---TTT-TCGATTTCTCAGGAgatcaaataga
gi|21 : tCTAGGGGTCCGATTTT----ACATTTTTGGCAGTTTTATT----TTT-TCGATTTCT
gi|22 : gctCCCCGCTAGGGGTCCGACTTTTATTACAtg
gi|23 : gtttattcccctaTTACCCCCGCTAGGGGTCCGATTTTTATAAC
gi|3 : agtAATATACAACACTCCTTCGTAAATGAAGACTGCGTAGGCGCCATGAAATGGTTTAAAATTGTTAGTGATAATCCTTGCAGTTTTG-CTGTT--------TCAGAAATGACTTTAACATATTAA--AGAAATGAAATAATAAAGTGTGTGTCAGATGTAGCCTGGAAAAT-GTGTAAGCAAACTTGTGGAAA---GTTTATTATTATATATTACAATGTA-CAATCC----------------GT----------------AC---AA-CAAA-ACACA-----TAAGACAGGA--TATTATTCTGTTTTAACTAACTT-T-AGTT---TAGAATGT-------C-------AAA--AA--------T-TATTTC--TCAGTTC-AGTCTTTATGGTGAT--AAA-TAT---TTGT-----GAA-CA--T-T-TCA----AAG---------A------------AG------------------------------------------------------ACAGTT---AAATCTCCAAAATGATC--TAGA----TA--GATATA--C-C-TGAAGTTCAATCTCCA----------------ATTTTTCATTCCTGCACGTGTATTTAAAATACA--TGTCCAAGATGATCT---T-------------AAGAAAATTTCAGTTGTTTTTTTTTAATTAAA---T-AATCTTT-TTTAGGTAT-TTTTCTTTTAA--AT-A---------AGCGT---TCAAATTAGATAACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AAAG-AAAGAAA-AAA-AAGTTTATATATTTCA---A-A--GATGTC----AATCTCAA-G-GTGAT-CTATATAT----AT-TTTCCATGAAAAT-GTTCCGATCGATGTTCTACAAACAGATGAATACATTTTAAATACATGCATGCAACCATGCGTAGACTAAGCATAGAATCCATAATTTACCCTCGCTACAGCCTAGATATCACAAAAAAATCTTCGTTTGAACATTATTTTGGGATATGCATGTACAACGGGGTCACTGTAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGACATAC---AAG----------ATAATAAGATTGAAGTTTGAAG-CG-AAGATACT---AA---T--AATTAAGTAAGGAAAGAATAAAGATAAAAAGAATGAA-----------GTATGGAAATAAATTAAGTTAACAAGATTGAAGTATCAA-T-----TGAAAAA----A-------ATTACAAGG-ACTAAGAAAGTATGG-AATGC-AAAC----GAT--CTAG---TGA-GTATGGAGCAAGT----AA-GGAAA-ACAAGATTGGATTATAAAGTCAGCGTTGAAAGAAGCAATGTTAAACAGATTGGCGTAAGTATGGAGAGAATGAAGAAAAATTTATTATAGATAA-AAGAAACACAGTACGAGTATTGT--GTGCTAGGATAGA
gi|4 : tcatcttcttc-TCTCCATGAAAAAAGTTTCGATCAATTATCTGCGAGTTGACGTATAGACTTTAAATACAaat
gi|4 : ---AAGA---ATGAAGACAGTAAGAATGAA--TTAAGGTCGTAAGACAAATAGAACAGT--AATGAAGCAGGAAGTAAACAAAGGTAACATGAATAAA-----------GTATG-----AACCTAAGATTACAAG--T-AAGTATG----------GAAA----------------TA------GCAAAGTAAATATTG-AAA---AAGCA-TAGACTACAAGAATGAA-GGATGAAGTTAGT----ACTGAAAA-ACAAGATTAGAGTATAA-GTAAGCATCGAAAGAAGCAAAGATAACATGGTTGAAGCAAGTA-GAAAAGAACGAAGAACGGTTCGTAGCTGATAACAAAAAACATAGTTTGAGTATTGaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggatagtaagaatgaagacagtaagaatgaattaaggtcgtaagacaaatagaacagtaatgaagcaggaagtaaacaaaggtaacatgaataaagtatgaacctaagattacaagtaagtatggaaatagcaaagtaaatattgaaaaagcatagactacaagaatgaaggatgaagttagtactgaaaaacaagattagagtataagtaagcatcgaaagaagcaaagataacatggttgaagcaagtagaaaagaacgaagaacggttcgtagctgataacaaaaaacatagtttgagtattg
gi|5 : tctccatgaaaaaagtttcgatcaattatctgcgagttgacgtatagactttaaatacaaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggatagtAACATTTTATAAGCACACTGATGGAAA---GTGATTTAGTATAGGTTACTAATTAATAAACC----------------GTTTTTGTTGT-------AT---GGGTGCA-ACACAATCTTTAAGACAAGG--TAATATTTTATTTTAAATG--TT-TGTATT---TTGACTGT-------T-------------T--------A--ACTTA--ACAGTCA-AATCTTCAAGGTGAT--AGA-T------TGTGAACGATA-TA--T-T-TCATGGAAAGTTTAATCTCA------------AAG--------------TT-------------AAATAA------TATATTTCAAAGACAGTT---CAATATCTAAGATAATCATTATAGG--TAT-GAGGTATGC-A-TGGA-TTCAATCT------------------------------------------------------------AGAAG---T---T-------------A--AAAA----AGTCGAGT-TTTTAAATTGAACATTTAAAGATA-T----ATATAATTT---ATAATTAT-GTATCTTTAAAA--T---TGAAGTCCAGTTATCCGTAGACAAATATAACATAATGAAGTATGAAAATG---AAGTAT-G-AAAGCAA-AAATAACCTTA-ACAAT--ATG-G-A--AAGAATTAATAATATTAA-GAGTGA
gi|6 : ataGTCAGATGTAGCCCGGAATATTATATAAGCGAACTGATGGAAA---GTGTTTAAGTAGATAGTATTGTTGA-CAAACC----------------GTTGTTTGTTGTATGGGTAC---AA-CAAA-ATACA-----TAAGATTCGA--TAAGATTTGATTTTAACTAA--T-T-TATT---GAGAATGT-------T-------AAA--TTTTAAACCAA-TATTAA--ACAGTTC-TGTCTCCAAGGTGAT--AGA-TTT---TTGC-----ATA-TA--T-T-TCG----AAA---------A------------------------------T-------------AAATGT------TATATTTCAAAGACAATT---AAATTTCCTAAATGAAT--TACATGTGTA--CATGTA--CACATAAAATTCAATTTCCAAGTTTATTGTGCGTATAT---------------------TTAA----AAACTCTCCAAGAAAATCTAAATATATAGATTTAAAAAGAAAA----AGTC------TTTATATTGAA---TTA-------------TAT-CTTT---TTGA--AA-A-------AAAGTCCCAGTCGAGTTCTATTATCTATTGG-AAAAATCATCT
gi|7 : CGACATATGTAAAGA---ACC---AAAACAAAAATAAAATAGGAAG-CA-CATATAAC---AACAATCAAGTTAA-TATAGAAAGAAAAAAGATAACAAGAATAAAATATGAAGTTTGTATGGAAGGAAATAAAAATAACAAGATTGAAGTATGAAGTAAAAATGAAAAG----AAACAAAGATTACAA-G-----------CATGG-AAAGA-AAAA--TAGATTACAATA-TTGAAGTATGAATTAAGTCCGGAA-AGAAACACAAGATTGAAGTATAAA-TTAACATGGAAAAAAGAAAATATATGAAAATTGGAGTATGCATGGAAATAATG-AGAAAGATTCGTAGAAGATAAAAAGAAATACGGTTTGAATG-TGTAAGCCATAGTAGAAAcattacttatattatgtatttcaaagaa
gi|8 : ttgttataaatatgcatttTATTATATTTTA-------T-T-TGTTGCACATATTGT-------T-------AAATAAT--------G-TATTTCTAAGAATTCCAATCTCCAAGATAATCTACA-TGTACATTGT-----ATA-TA--TCT-TTA----AAA---------A------------ATGCCCAGTTACCGACTTT-------------AAAT-C------TGTTTTTCAAAGACAGTT---CAATCTCCACGATGATgt
gi|8 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgTTTCAAA-G-A--CA-GTTCAAT---CTCCACG-ATGATACT-TTTATGAAAATATCTCCATTAAA------CC-AT-GATTATCTCCTAGCTTACGTATAAATTTTAAATATAacttttatgaaaatatctccattaaaccatgattatctcctagcttacgtataaattttaaatataaaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
gi|9 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgtattatattttatttgttgcacatattgttaaataatgtatttctaagaattccaatctccaagataatctacatgtacattgtatatatctttaaaaaatgcccagttaccgactttaaatctgtt--AGAAATGTAATAATAAAGTTTGAGTCATATGTCGCCCAAAACATTTTATAAGTATACTGATGGTAA---GTGATTTAGTACAGGTTACTATGTA-CAAACCTTTGTTTGTTGTATGTGT----------------GC---AA-CAAA-ATACA-----TAAGACAGGA--TACTATTTTATTTTA--------------T---TAGAATGT-------TTAACTGTAAA--AT--------AATATTTC--ACAATTG-AGTCTCCAAGATGAT--AGA-TAT---TTTT-----ATA-CATGT-T-TCA----AAG---------A------------AAG--------------TTTAATCTCCCAGTAAAATGTTATACATGTATTTCGAAGACAGTTGTACAATCTCCCAGATGCTC--TACA----TA--GGTATA--aaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 11 444444444444 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888 5555555555 11 11 777777777777777777777777777777777777777777 11111 1111111 444444444444444444444444444444444444 11111 1111 888888888888888888888888888888888888888888888888888888 11111111 1111 1111 111111 11111111111111111111111111111111111111111111111111111 44444444444444444 1111 11111 4444444444444444 1111 44444444444444444444 111111 11 111 1 111 1 1 1111 11 1 2222 111 1 1 1 33 11 4444444444444 33333 11111 22222222222 3333333333333 11111 111 111 11111 11
lowQualScore : 0 2 0 00 11 11 888 5 33 2 55 3 444444444444 0 22 11111111111111111111111111111111111111111111111111111111111111111111111111111111 1 88 4444444444 6 11 1 22 888 1 1 5 444444444444444444444444444444444444444444 2 4 11111 66 1 1111111 4 4 777 333333333333333333333333333333333333 55 66 55 1 4 1 777 22222 5 66 5 5 0000 333333333333333333333333333333333333333333333333333333 88888888 888 3333 0 7777 5 444444 1 66666666666666666666666666666666666666666666666666666 66666666666666666 0 7777 00000 2222222222222222 3333 77777777777777777777 444444 1 5 33 777 0 444 0 0 3 3333 1 11 777 3 5 8 8 0 3 1 1111 8 222 66 1 1 0 6 3 3 0 2 7 7 44 7 88 1111111111111 1 222 33 0 55 99999 8 55555 2 77777777777 0 44 1 5 3333333333333 5 1 4 0 22222 77 333 777 6 5 5 33333 5 5 0 0 1 1 0 2 33 1
lowQualScore : . . . .. .. .. ... . .. . .. . ............ . .. ................................................................................ . .. .......... . .. . .. ... . . . .......................................... . . ..... .. . ....... . . ... .................................... .. .. .. . . . ... ..... . .. . . .... ...................................................... ........ ... .... . .... . ...... . ..................................................... ................. . .... ..... ................ .... .................... ...... . . .. ... . ... . . . .... . .. ... . . . . . . . .... . ... .. . . . . . . . . . . .. . .. ............. . ... .. . .. ..... . ..... . ........... . .. . . ............. . . . . ..... .. ... ... . . . ..... . . . . . . . . .. .
lowQualScore : 7 2 1 44 33 66 888 0 55 5 88 2 888888888888 0 88 00000000000000000000000000000000000000000000000000000000000000000000000000000000 0 33 7777777777 7 00 0 66 888 0 0 0 444444444444444444444444444444444444444444 0 4 11111 11 0 5555555 0 0 000 777777777777777777777777777777777777 55 55 55 0 0 0 888 55555 0 99 0 0 6666 222222222222222222222222222222222222222222222222222222 00000000 888 9999 2 5555 0 777777 0 33333333333333333333333333333333333333333333333333333 77777777777777777 8 0000 00000 8888888888888888 0000 44444444444444444444 444444 4 6 88 555 0 000 0 0 2 2222 4 00 000 2 6 0 0 0 2 0 2222 0 666 44 4 0 8 7 3 3 7 0 3 3 00 3 33 0000000000000 4 444 88 8 88 00000 0 22222 5 11111111111 6 66 0 7 7777777777777 7 6 3 7 44444 11 777 666 6 0 7 66666 7 7 4 7 0 0 3 5 88 0
consensus : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTATCTGTTATGCTATAT-------A----GTC-TTTTACCAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATACAACACTCCTTCGTAAATGAAGACTGCGTCGGCGCCATNAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTT--------TCAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAANATTATATAAGCATACTGATGGAAA---GTGATTTAGTAGANGTTACNATTTA-CAAACC----------------GT----------------AC---GA-CGAA-ACACA-----TAAGACAGGA--TAATATTNTATTTTAACTAACTT-T-TATT---TAGAATGT-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTCTCCAAGGTGAT--ANA-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGAT-C--TACA----TA-GATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCGAGTCTTTTAAATTAAA---TTAATC-TAGT--GGTAT-T--TTT---TTAA--AT-ATA----TAAAGCCT---TCAAGTTCAATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTT--CATAG--AAATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAN-GTTCCGATCGATTATCTCCAAGCTGACGAATANATTTTAAATACATGCATG-CA-CCATGCGTAGACTAAGCATAGAATCCATTATTCACCCTCGCTACAGCCTAGATATCACGAAAAAACCTTCGTTTGAACATTATTTTGG-ATATGCATGTACAACGGGGTCACTATAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGGCATAC---AAGA---AT-ATAATAAGATTGAAGTTTGAAGCGAAGATAACGA-A-TCAA-TTAAG----TAAGGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGTTAACAAGATTGAAGTATNAATTGAAA-A----A----AA-AAAG-ATTACAAGAACAAAG----TAAGTATGG-AAAGT-AAAC--CAGATNACAAGAATTG-AGTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTNGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTATAAA
Reference ( family-544 ) : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTATCTGTTATGCTATAT-------A----GTC-TTTTACCAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATACAACACTCCTTCGTAAATGAAGACTGCGTCGGCGCCATNAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTANACTGTT--------TCAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAANATTATATAAGCATACTGATGGAAA---GTGATTTAGTAGANGTTACNATTTA-CAAACC----------------GT----------------AC---GA-CGAA-ACACA-----TAAGACAGGA--TAATATTNTATTTTAACTAACTT-T-TATT---TAGAATGT-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTCTCCAAGGTGAT--ANA-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGAT-C--TACA----TA-GATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCGAGTCTTTTAAATTAAA---TTAATCGTAGT--GGTAT-T--TTT---TTAA--AT-ATA----TAAAGCCT---TCAAGTTCAATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTT--CATAG--AAATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAN-GTTCCGATCGATTATCTCCAAGCTGACGAATANATTTTAAATACATGCATG-CA-CCATGCGTAGACTAAGCATAGAATCCATTATTCACCCTCGCTACAGCCTAGATATCACGAAAAAACCTTCGTTTGAACATTATTTTGG-ATATGCATGTACAACGGGGTCACTATAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGGCATAC---AAGA---AT-ATAATAAGATTGAAGTTTGAAGCGAAGATAACGACA-TCAA-TTAAG----TAAGGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGTTAACAAGATTGAAGTATNAATTGAAA-A----A----AA-AAAG-ATTACAAGAACAAAG----TAAGTATGG-AAAGT-AAAC--CAGATNACAAGAATTG-AGTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTNGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTATAAA
gi|1 : TTACCCCTTCTGGCGGTCCGATTTTTATTACATTTTTGGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCAAGACTGTGCAATCGGTAATTACCAGCGTCACATAACGCGGTAGGTATATAAAATTCATTGTTATAATTTGTTATG--ATAT-------A----GTC-TTTTACTAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAAACAACACTCCTTCGTAAATGAAGACTGCGCCGACGCCATAAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTAAACTG-----------CAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-ATACAAGCATACTGATGGAAA---GTGATTTATTAGATGTTACAATTTA-CAAACC----------------GT----------------AT---AA-CAAA-ACACA-----TAAGACAGGA--TAGTATTCTGTTTTAACTAACTT-T-TATT---AAGAATGT-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTTTCCAAGGTGAT--AAC-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGA--------------TT-------------AAATGC------TGTATTTCAAAGATAGTT---CAATCTCCAAGATAAT-C--TACA----TA-AATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TATCCAAGCTGATCT---T-------------AAGAAAT----AGTTGAGTCTTCTAAATTAAA---TTAGTGGTAGT--GGTAT-T--TTT---TTAA--ATCATAG---TAAAGTCT---TCAAGTTCAATTACCTTTAAGAAAAAATCATATAA--AAGTATAAATTTGAAAAAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTTTATATAT--AAATGTTCAATAATCTCAA-G-GTGAT-CTATATAT----AT-TTTCCATGAAAAG-GTTCCGATCCATTATCTCCAGGCTGACGAATACATTTTAGATACATG---G-CA-CCATGCGTAGACTAAGAATAGAATCCATTATTCATCCTCATTACAGCCTAGATCTCACGAAAAAA----------AAC-TTA---TGG-----GCATGTACAACGGGGTCACTATAGG----------ATTTTCTA--CTATTTAAATAACCCGGCATAC---ATGATACAT-GTAATAAGATTGAAGTTTGAAGCGAAGATAAAGATATTCAA-TTAAG----TAAGGAAAGAATAAAGATAACAAGAATGAG-----------GTATAGAACGCAATTAAGTTTACAAGATTGAAGTATTAATTGAAA-A----ACAGTAACAAAG-ATTACAAGAACAAAG----TAAGTATGG-AAAGTAAAAC--CAGATTACAAGAATTG-AGTATGAAGTAAGT----AA-GGAAA-ACAAGATTGAAGTATAAACTCAGCATGGAAAGAATCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAATAAAAATTGGTTTTAGATACCAGGAAACACAGTATGAGTATTGT--GTTCTAGTATAAA
gi|10 : AAA----TAATGAAAGAATAAAGACAACAACAATGCA-----------GTATG--AAGAATTTAAGTTAAAAAGATCGAAATATTTATTGAAA-A----A----A-------ATTA--------------------------AATT-AAAC--CTGATAACAAAAATTG-AGTATGAAGTAAG---------GGAA-TCAAGATTGAAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAATGATTGGAGTAAGTATGGGAAGAAAGAATAAAAACTGGTTATAGATAACAAGAAACACAGTATGAGTATTtt
gi|11 : TTACCCCCGCTAGCGGTCCGA-----A------TTTTAACATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTAACCAGCGTCACATAACGCGATAGGGATATAAAATTCC---TTATTATCTGTTATGCCATACACAGTGAA----GTCTTTTTACCAGGT---tttctgataggatagaaat
gi|12 : gaATTAAGTAGAACTGAAATAATAAAGTTTGTATCAGATGTAACCCGGAACATTATACAAGCATACTTATGGAAT---GTGATTTAGTAGAGGTTACGTATCA-CAAACC----------------GT----------------gtgggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|13 : aatcaaagtgtttaaagcactaaaacctcggtaaacactgA-ATACA-----CGAGACAAGA--TAATATTGTATGTTAACTAACTT-T-TATT---TAGAATGT-------T-------TA----A------------C-TGTTTC--ATAGTT--AGTCTCCAAAATGAT--ACA-TAT---TTGT-----GTATTA--T-TCTCA----AAA---------ACGTTCAATCGACAGG--------------TT-------------AAACGT------TATACATCAAAGACAGCT---CAGTCTACAAGATGAT-A--TACA----TA-GATATA--C-tatttgttgtatgggtacagtgataagcagtgagtgacctaatgtaataaggcaggatgctattttatttta
gi|14 : -----------GTGTAGAAAGAAACCAA-------AAATTGAAGTATAAATGGAAATA----A----AC-TAAG-ATAACAAGAACAACA----TAGGTATGGTAAAG---AATTATAGATAACAAGAATGA-AGTATTAACTGA------AA-GAAAA-AAAAGATTGTAGTAC-AAGTCATCATGGGGA-AAACAAATATAACAAGATTGGGG
gi|15 : AAGCATATTGATGGATATTTATCATTAAGCTGAGGTTATTATTTA-CAAACC----------------TT----------------TCTTTGT-TGGATGCGCA-----CGAGAAAGTACATAATATTTTATTTTGACTAACAT-T-TATT---TAGAATGTTTAACTGT-------AA----A--ATA-------A-CATTTC--ATAGCTC-AGTCTCC-AGATGAT--ATA-Tgtg
gi|16 : ctttgTTTATTT---TTTGTCGATTTCTCAGAAAATTATGTAACGGTTTGATTGCTCCAGATTATACAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATATAATTCTTTTTTATTATTTGGTATG-TA-AT-------A----GTC-TTTTACCAGGT---
gi|17 : A-CAAA-ATACA-----TAAGGCAGAA--TTACATTTTATGTT-------CT-T-TGTT---GATAGTGT-------TT------AATTGTA--AA--------A-TATTTT--AAAGTTA-AGTCTCCAAGTTGAT--AAACCAT---TT
gi|18 : ataTTACCCCT-CTAGGGGTCCGAATTTTATTACATAATTAGGATTTTT-TTTATGTTT-TCGATTTCTCAAAAAcat
gi|19 : agtttgttgcgaatttatagtttagtcccTTATCCCCGTTAGGGGTCCGATTTGTATTACATTTTTA----------TT---TTT-TCGATTTCTCAGAAAATTATGTAACGGCTTAATTGCTCCAGATTGTGCAA
gi|2 : gtTTT---TTT-TCGATTTCTTAGAAAATTTTGTAACGGTTTAATTGCTCCAGATAGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTAACTGTTATACTATAT-------ATATAGTC-TTTTA--AGGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTACAACACCTTTTCGTAAATGAAGACTGCATCGGAGCCATCAAATTGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTTGTAGTTGCTCTGAAATGA-TTTGAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-ATATAAACATAGTGATGGAAA---GTGATTTATTAGATGTTACAGTTTA-CAAACC----------------GT----------------AC---AA-CAAA-ACACA-----TAAGACAGGA--TAATATTATGTTTTAACTAACTTAT-TATT---TAGAATGT-------T-------AA----A--AG--------A-TACTTC--ACAGTTC-ATTCTCCAAGGTGAT--AAC-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTAGTTCAAAGATAGTT---CAATCTCCAAGATGAT-CTATATA----TA-GATGTA--C-C-TGAAATTTATTTTCAA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCCAGTCTTTTAGATTAAA---TT-ATCATAGT--GGTAT-T--TTT---T------T-ATA----TAAAGCCT---TCAAGTTTAATTACCTATTGGAAAAAATTGTCTAA--AAGTATACATTTG---AAA-AA-ATAAATAAATAAA-AAGTTTATATTTTT--TATAGATAAATGTTCAATCACCTCAA-G-GTGAT-CTATTTAT----AT-TTTCCATGAAAAT-GTTCCGATAAATTATCTCCAAGCTGACGAATATATTTT---TACGTACATGACA-CCATGCGTAAACTAAGCAAAGAATCCATTAGTCACTCTCACTATAGCCTAGATATCACGAACAAACCTTCGTTTGAACATTATTTTGGTATATACATATACAACAGGGTCATTATAGGTTTCCATACCATTTTCTAATCTCTTTAAATAACCCGGCATAC------A---AT-ATAATAAGATTGCAGTTTGAAGCGAAGATAACGA----TAA-TCAAG----TAAGTAAAGAATAACGATTACAAGAATGGA-----------GTATGGAAAGAAATTAACTTAACGAGATTGAAGTATTAATTG----A----C----AA-AAAG-ATTACAAGAACAAAG----TTAGCATGG--AAGT-AAAC--CAGATAACAAGACTTG-CGTATGAAGTAAGT----AA-GGAAA-ACAAGATAAGAGTAAAAAGTCAGCATGGAAAGAAGC-AAGATAAAAAGATTGGAGTAGGTATGGAAAGAATGAATAAGACTTGGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GT
gi|20 : tTTATCCCCGCCAGAGGTCCGATTTTTATTACATTTTTTGCATTTTTA-TT---TTT-TCGATTTCTCAGGAgatcaaataga
gi|21 : tCTAGGGGTCCGATTTT----ACATTTTTGGCAGTTTTATT----TTT-TCGATTTCT
gi|22 : gctCCCCGCTAGGGGTCCGACTTTTATTACAtg
gi|23 : gtttattcccctaTTACCCCCGCTAGGGGTCCGATTTTTATAAC
gi|3 : agtAATATACAACACTCCTTCGTAAATGAAGACTGCGTAGGCGCCATGAAATGGTTTAAAATTGTTAGTGATAATCCTTGCAGTTT-TGCTGTT--------TCAGAAATGACTTTAACATATTAA--AGAAATGAAATAATAAAGTGTGTGTCAGATGTAGCCTGGAAAAT-GTGTAAGCAAACTTGTGGAAA---GTTTATTATTATATATTACAATGTA-CAATCC----------------GT----------------AC---AA-CAAA-ACACA-----TAAGACAGGA--TATTATTCTGTTTTAACTAACTT-T-AGTT---TAGAATGT-------C-------AA----A--AA--------T-TATTTC--TCAGTTC-AGTCTTTATGGTGAT--AAA-TAT---TTGT-----GAA-CA--T-T-TCA----AAG---------A------------AG------------------------------------------------------ACAGTT---AAATCTCCAAAATGAT-C--TAGA----TA-GATATA--C-C-TGAAGTTCAATCTCCA----------------ATTTTTCATTCCTGCACGTGTATTTAAAATACA--TGTCCAAGATGATCT---T-------------AAGAAAATTTCAGTTGTTTTTTTTTAATTAAA---T-AATCTTTTTTAGGTAT-T--TTTCTTTTAA--AT-A---------AGCGT---TCAAATTAGATAACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AAAG-AAAGAAA-AAA-AAGTTTATATATTT--CAAAG--A--TGTC----AATCTCAA-G-GTGAT-CTATATAT----AT-TTTCCATGAAAAT-GTTCCGATCGATGTTCTACAAACAGATGAATACATTTTAAATACATGCATG-CAACCATGCGTAGACTAAGCATAGAATCCATAATTTACCCTCGCTACAGCCTAGATATCACAAAAAAATCTTCGTTTGAACATTATTTTGGGATATGCATGTACAACGGGGTCACTGTAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGACATAC---AAGA-------TAATAAGATTGAAGTTTGAAGCGAAGATA-CTA-A-T-AA-TTAAG----TAAGGAAAGAATAAAGATAAAAAGAATGAA-----------GTATGGAAATAAATTAAGTTAACAAGATTGAAGTATCAATTGAAA-A----A----AA-------TTACAAGGACTAAG----AAAGTATGG-AATGC-AAAC----GAT--CTAG---TG-AGTATGGAGCAAGT----AA-GGAAA-ACAAGATTGGATTATAAAGTCAGCGTTGAAAGAAGCAATGTTAAACAGATTGGCGTAAGTATGGAGAGAATGAAGAAAAATTTATTATAGATAA-AAGAAACACAGTACGAGTATTGT--GTGCTAGGATAGA
gi|4 : tcatcttcttc-TCTCCATGAAAAAAGTTTCGATCAATTATCTGCGAGTTGACGTATAGACTTTAAATACAaat
gi|4 : -ATAGTAAGAATGAAG------AC--AG-TAA-GA-A-TGAA-TTAAGGTCGTAAG------ACAAATAGAACAGTAATGAA-----------GCA-GGAAGTAAACAAAGGTAACATGAATAAAGTATGAACCTAAG-ATTACA----AG-TAAGTATGGAAATAGCAAAG----TAAATATTG-AAA---AAGCA-TAGACTACAAGAATGA-AGGATGAAGTTAGT----ACTGAAAA-ACAAGATTAGAGTATAA-GTAAGCATCGAAAGAAGCAAAGATAACATGGTTGAAGCAAGTA-GAAAAGAACGAAGAACGGTTCGTAGCTGATAACAAAAAACATAGTTTGAGTATTGaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggatagtaagaatgaagacagtaagaatgaattaaggtcgtaagacaaatagaacagtaatgaagcaggaagtaaacaaaggtaacatgaataaagtatgaacctaagattacaagtaagtatggaaatagcaaagtaaatattgaaaaagcatagactacaagaatgaaggatgaagttagtactgaaaaacaagattagagtataagtaagcatcgaaagaagcaaagataacatggttgaagcaagtagaaaagaacgaagaacggttcgtagctgataacaaaaaacatagtttgagtattg
gi|5 : tctccatgaaaaaagtttcgatcaattatctgcgagttgacgtatagactttaaatacaaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggAACATTTTATAAGCACACTGATGGAAA---GTGATTTAGTATAGGTTACTAATTAATAAACC----------------GTTTTTGTTGT-------AT---GGGTGCA-ACACAATCTTTAAGACAAGG--TAATATTTTATTTTAAATG--TT-TGTATT---TTGACTGT-------T-----------------T--------A--ACTTA--ACAGTCA-AATCTTCAAGGTGAT--AGA-T------TGTGAACGATA-TA--T-T-TCATGGAAAGTTTAATCTCA------------AAG--------------TT-------------AAATAA------TATATTTCAAAGACAGTT---CAATATCTAAGATAAT-CATTATAGG--TATGAGGTATGC-A-TG-GATTCAATCT------------------------------------------------------------AGAAG---T---T-------------A--AAAA----AGTCGAGT-TTTTAAATTGAACATTTAA----AGA--TATATATAATTT---ATAATTAT-GTATCTTTAAAA--T---TGAAGTCCAGTTATCCGTAGACAAATATAACATAATGAAGTATGAAAATG---AAGTAT-G-AAAGCAA-AAATAACCTTA-ACAAT----ATGG--AAAGAATTAATAATATTAA-GAGTGA
gi|6 : ataGTCAGATGTAGCCCGGAATATTATATAAGCGAACTGATGGAAA---GTGTTTAAGTAGATAGTATTGTTGA-CAAACC----------------GTTGTTTGTTGTATGGGTAC---AA-CAAA-ATACA-----TAAGATTCGA--TAAGATTTGATTTTAACTAA--T-T-TATT---GAGAATGT-------T-------AA----A--TTTTAAACCAA-TATTAA--ACAGTTC-TGTCTCCAAGGTGAT--AGA-TTT---TTGC-----ATA-TA--T-T-TCG----AAA---------A------------------------------T-------------AAATGT------TATATTTCAAAGACAATT---AAATTTCCTAAATGAA-T--TACATGTGTA-CATGTA--CACATAAAATTCAATTTCCAAGTTTATTGTGCGTATAT---------------------TTAA----AAACTCTCCAAGAAAATCTAAATATATAGATTTAAAAAGAAAA----AGTC------TTTATATTGAA---TTA------------TAT-C--TTT---TTGA--A----A----AAAAGTCCCAGTCGAGTTCTATTATCTATTGG-AAAAATCATCT
gi|7 : CGACATATGTAAAGA---ACCAAAACAAAAATAAAATAGGAAGCACATATAACAACAATCAAGTTAA-----TATAGAAAGAAAAAAGATAACAAGAATAAAATATGAAGTTTGTATGGAAGGAAATAAAAATAACAAGATTGAAGTATGAAGTAAAA-A----T----GA-AAAG-A-------AACAAAGATTACAAGCATGG-AAAGA-AAAA--TAGATTACAAT-ATTGAAGTATGAATTAAGTCCGGAA-AGAAACACAAGATTGAAGTATAAA-TTAACATGGAAAAAAGAAAATATATGAAAATTGGAGTATGCATGGAAATAATG-AGAAAGATTCGTAGAAGATAAAAAGAAATACGGTTTGAATG-TGTAAGCCATAGTAGAAAcattacttatattatgtatttcaaagaa
gi|8 : ttgttataaatatgcatttTATTATATTTTA-------T-T-TGTTGCACATATTGT-------T-------AA----ATAAT--------G-TATTTCTAAGAATTCCAATCTCCAAGATAATCTACA-TGTACATTGT-----ATA-TA--TCT-TTA----AAA---------A------------ATGCCCAGTTACCGACTTT-------------AAAT-C------TGTTTTTCAAAGACAGTT---CAATCTCCACGATGATAC--T------------TTTA------TGAAAAT--ATCTCCA---------------------------------------TTAA-----A-----CCATGATTATCT---gt
gi|8 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgTTT--CAAAG--ACA-GTTCAAT---CTCCACG-ATGATACT-TTTATGAAAATATCTCCATTAAA------CC-AT-GATTATCTCCTAGCTTACGTATAAATTTTAAATATAcctagcttacgtataaattttaaatataaaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
gi|9 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgtattatattttatttgttgcacatattgttaaataatgtatttctaagaattccaatctccaagataatctacatgtacattgtatatatctttaaaaaatgcccagttaccgactttaaatctgtt--AGAAATGTAATAATAAAGTTTGAGTCATATGTCGCCCAAAACATTTTATAAGTATACTGATGGTAA---GTGATTTAGTACAGGTTACTATGTA-CAAACCTTTGTTTGTTGTATGTGT----------------GC---AA-CAAA-ATACA-----TAAGACAGGA--TACTATTTTATTTTA--------------T---TAGAATGT-------TTAACTGTAA----A--AT--------AATATTTC--ACAATTG-AGTCTCCAAGATGAT--AGA-TAT---TTTT-----ATA-CATGT-T-TCA----AAG---------A------------AAG--------------TTTAATCTCCCAGTAAAATGTTATACATGTATTTCGAAGACAGTTGTACAATCTCCCAGATGCT-C--TACA----TA-GGTATA--aaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 11 444444444444 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888 5555555555 11 11 777777777777777777777777777777777777777777 11111 1111111 444444444444444444444444444444444444 11111 1111 888888888888888888888888888888888888888888888888888888 11111111 1111 1111 111111 11111111111111111111111111111111111111111111111111111 44444444444444444 1111 11111 555555555555555555555555555555555555555555555555 111111 11 111 1 111 1 1 1111 11 1 2222 111 1 1 1 33 11 4444444444444 333333 11111 22222222222 33333333333333 11111 111 111 11111 11
lowQualScore : 0 2 0 00 11 11 888 5 33 2 55 3 444444444444 0 22 11111111111111111111111111111111111111111111111111111111111111111111111111111111 1 7 4444444444 6 11 1 22 888 1 1 5 444444444444444444444444444444444444444444 2 4 11111 66 1 1111111 4 4 777 333333333333333333333333333333333333 55 66 55 1 4 1 777 22222 5 66 5 5 0000 333333333333333333333333333333333333333333333333333333 88888888 888 3333 0 7777 5 444444 1 66666666666666666666666666666666666666666666666666666 66666666666666666 0 7777 00000 555555555555555555555555555555555555555555555555 444444 1 5 33 777 0 444 0 0 3 3333 1 11 777 3 5 8 8 0 3 1 1111 8 222 66 1 1 0 6 3 3 0 2 7 7 44 7 88 1111111111111 1 222 33 0 55 111111 8 55555 2 77777777777 0 44 1 55555555555555 5 1 4 0 22222 77 333 777 6 5 5 33333 5 5 0 0 1 1 0 2 33 1
lowQualScore : . . . .. .. .. ... . .. . .. . ............ . .. ................................................................................ . . .......... . .. . .. ... . . . .......................................... . . ..... .. . ....... . . ... .................................... .. .. .. . . . ... ..... . .. . . .... ...................................................... ........ ... .... . .... . ...... . ..................................................... ................. . .... ..... ................................................ ...... . . .. ... . ... . . . .... . .. ... . . . . . . . .... . ... .. . . . . . . . . . . .. . .. ............. . ... .. . .. ...... . ..... . ........... . .. . .............. . . . . ..... .. ... ... . . . ..... . . . . . . . . .. .
lowQualScore : 7 2 1 44 33 66 888 0 55 5 88 2 888888888888 0 88 00000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3 7777777777 7 00 0 66 888 0 0 0 444444444444444444444444444444444444444444 0 4 11111 11 0 5555555 0 0 000 777777777777777777777777777777777777 55 55 55 0 0 0 888 55555 0 99 0 0 6666 222222222222222222222222222222222222222222222222222222 00000000 888 9999 2 5555 0 777777 0 33333333333333333333333333333333333333333333333333333 77777777777777777 8 0000 00000 666666666666666666666666666666666666666666666666 444444 4 6 88 555 0 000 0 0 2 2222 4 00 000 2 6 0 0 0 2 0 2222 0 666 44 4 0 8 7 3 3 7 0 3 3 00 3 33 0000000000000 4 444 88 8 88 888888 0 22222 5 11111111111 6 66 0 77777777777777 7 6 3 7 44444 11 777 666 6 0 7 66666 7 7 4 7 0 0 3 5 88 0
consensus : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTATCTGTTATGCTATAT-------A----GTC-TTTTACCAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATACAACACTCCTTCGTAAATGAAGACTGCGTCGGCGCCATNAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTT--------TCAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAANATTATATAAGCATACTGATGGAAA---GTGATTTAGTAGANGTTACNATTTA-CAAACC----------------GT----------------AC---GA-CGAA-ACACA-----TAAGACAGGA--TAATATTNTATTTTAACTAACTT-T-TATT---TAGAATGT-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTCTCCAAGGTGAT--ANA-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGAT-C--TACA----TA-GATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCGAGTCTTTTAAATTAAATTAAT-C-TAGT---GGTAT-T----TTT---TTAA--AT-ATA----TAAAGCCT---TCAAGTTCAATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTT--CATAG--AAATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAN-GTTCCGATCGATTATCTCCAAGCTGACGAATANATTTTAAATACATGCATG-CA-CCATGCGTAGACTAAGCATAGAATCCATTATTCACCCTCGCTACAGCCTAGATATCACGAAAAAACCTTCGTTTGAACATTATTTTGG-ATATGCATGTACAACGGGGTCACTATAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGGCATAC---AAGA---AT-ATAATAAGATTGAAGTTTGAAGCGAAGATAACGA--A-TCAA-TTAAG----TAAGGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGTTAACAAGATTGAAGTATNAATTGAAAA----A----AA-A-AAG-ATTACAAGAACAAAG----TAAGTATGG-AAAGT-AAAC--CAGATNACAAGAATTG-AGTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTNGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTATAAA
Reference ( family-544 ) : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTATCTGTTATGCTATAT-------A----GTC-TTTTACCAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATACAACACTCCTTCGTAAATGAAGACTGCGTCGGCGCCATNAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTT--------TCAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAANATTATATAAGCATACTGATGGAAA---GTGATTTAGTAGANGTTACNATTTA-CAAACC----------------GT----------------AC---GA-CGAA-ACACA-----TAAGACAGGA--TAATATTNTATTTTAACTAACTT-T-TATT---TAGAATGT-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTCTCCAAGGTGAT--ANA-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGAT-C--TACA----TA-GATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCGAGTCTTTTAAATTAAATTAAT-C-TAGT---GGTAT-T----TTT---TTAA--AT-ATA----TAAAGCCT---TCAAGTTCAATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTT--CATAG--AAATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAN-GTTCCGATCGATTATCTCCAAGCTGACGAATANATTTTAAATACATGCATG-CA-CCATGCGTAGACTAAGCATAGAATCCATTATTCACCCTCGCTACAGCCTAGATATCACGAAAAAACCTTCGTTTGAACATTATTTTGG-ATATGCATGTACAACGGGGTCACTATAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGGCATAC---AAGA---AT-ATAATAAGATTGAAGTTTGAAGCGAAGATAACGA--A-TCAA-TTAAG----TAAGGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGTTAACAAGATTGAAGTATNAATTGAAAA----A----AA-A-AAG-ATTACAAGAACAAAG----TAAGTATGG-AAAGT-AAAC--CAGATNACAAGAATTG-AGTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTNGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTATAAA
gi|1 : TTACCCCTTCTGGCGGTCCGATTTTTATTACATTTTTGGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCAAGACTGTGCAATCGGTAATTACCAGCGTCACATAACGCGGTAGGTATATAAAATTCATTGTTATAATTTGTTATG--ATAT-------A----GTC-TTTTACTAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAAACAACACTCCTTCGTAAATGAAGACTGCGCCGACGCCATAAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTAAACTG-----------CAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-ATACAAGCATACTGATGGAAA---GTGATTTATTAGATGTTACAATTTA-CAAACC----------------GT----------------AT---AA-CAAA-ACACA-----TAAGACAGGA--TAGTATTCTGTTTTAACTAACTT-T-TATT---AAGAATGT-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTTTCCAAGGTGAT--AAC-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGA--------------TT-------------AAATGC------TGTATTTCAAAGATAGTT---CAATCTCCAAGATAAT-C--TACA----TA-AATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TATCCAAGCTGATCT---T-------------AAGAAAT----AGTTGAGTCTTCTAAATTAAATTAGTGG-TAGT---GGTAT-T----TTT---TTAA--ATCATAG---TAAAGTCT---TCAAGTTCAATTACCTTTAAGAAAAAATCATATAA--AAGTATAAATTTGAAAAAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTTTATATAT--AAATGTTCAATAATCTCAA-G-GTGAT-CTATATAT----AT-TTTCCATGAAAAG-GTTCCGATCCATTATCTCCAGGCTGACGAATACATTTTAGATACATG---G-CA-CCATGCGTAGACTAAGAATAGAATCCATTATTCATCCTCATTACAGCCTAGATCTCACGAAAAAA----------AAC-TTA---TGG-----GCATGTACAACGGGGTCACTATAGG----------ATTTTCTA--CTATTTAAATAACCCGGCATAC---ATGATACAT-GTAATAAGATTGAAGTTTGAAGCGAAGATAAAGAT-ATTCAA-TTAAG----TAAGGAAAGAATAAAGATAACAAGAATGAG-----------GTATAGAACGCAATTAAGTTTACAAGATTGAAGTATTAATTGAAAA----ACAGTAACA-AAG-ATTACAAGAACAAAG----TAAGTATGG-AAAGTAAAAC--CAGATTACAAGAATTG-AGTATGAAGTAAGT----AA-GGAAA-ACAAGATTGAAGTATAAACTCAGCATGGAAAGAATCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAATAAAAATTGGTTTTAGATACCAGGAAACACAGTATGAGTATTGT--GTTCTAGTATAAA
gi|10 : AAA----TAATGAAAGAATAAAGACAACAACAATGCA-----------GTATG--AAGAATTTAAGTTAAAAAGATCGAAATATTTATTGAAAA----A----A--------ATTA--------------------------AATT-AAAC--CTGATAACAAAAATTG-AGTATGAAGTAAG---------GGAA-TCAAGATTGAAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAATGATTGGAGTAAGTATGGGAAGAAAGAATAAAAACTGGTTATAGATAACAAGAAACACAGTATGAGTATTtt
gi|11 : TTACCCCCGCTAGCGGTCCGA-----A------TTTTAACATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTAACCAGCGTCACATAACGCGATAGGGATATAAAATTCC---TTATTATCTGTTATGCCATACACAGTGAA----GTCTTTTTACCAGGT---tttctgataggatagaaat
gi|12 : gaATTAAGTAGAACTGAAATAATAAAGTTTGTATCAGATGTAACCCGGAACATTATACAAGCATACTTATGGAAT---GTGATTTAGTAGAGGTTACGTATCA-CAAACC----------------GT----------------gtgggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|13 : aatcaaagtgtttaaagcactaaaacctcggtaaacactgA-ATACA-----CGAGACAAGA--TAATATTGTATGTTAACTAACTT-T-TATT---TAGAATGT-------T-------TA----A------------C-TGTTTC--ATAGTT--AGTCTCCAAAATGAT--ACA-TAT---TTGT-----GTATTA--T-TCTCA----AAA---------ACGTTCAATCGACAGG--------------TT-------------AAACGT------TATACATCAAAGACAGCT---CAGTCTACAAGATGAT-A--TACA----TA-GATATA--C-tatttgttgtatgggtacagtgataagcagtgagtgacctaatgtaataaggcaggatgctattttatttta
gi|14 : -----------GTGTAGAAAGAAACCAA-------AAATTGAAGTATAAATGGAAAT----A----AA-CTAAG-ATAACAAGAACAACA----TAGGTATGGTAAAG---AATTATAGATAACAAGAATGA-AGTATTAACTGA------AA-GAAAA-AAAAGATTGTAGTAC-AAGTCATCATGGGGA-AAACAAATATAACAAGATTGGGG
gi|15 : AAGCATATTGATGGATATTTATCATTAAGCTGAGGTTATTATTTA-CAAACC----------------TT----------------TCTTTGT-TGGATGCGCA-----CGAGAAAGTACATAATATTTTATTTTGACTAACAT-T-TATT---TAGAATGTTTAACTGT-------AA----A--ATA-------A-CATTTC--ATAGCTC-AGTCTCC-AGATGAT--ATA-Tgtg
gi|16 : ctttgTTTATTT---TTTGTCGATTTCTCAGAAAATTATGTAACGGTTTGATTGCTCCAGATTATACAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATATAATTCTTTTTTATTATTTGGTATG-TA-AT-------A----GTC-TTTTACCAGGT---
gi|17 : A-CAAA-ATACA-----TAAGGCAGAA--TTACATTTTATGTT-------CT-T-TGTT---GATAGTGT-------TT------AATTGTA--AA--------A-TATTTT--AAAGTTA-AGTCTCCAAGTTGAT--AAACCAT---TT
gi|18 : ataTTACCCCT-CTAGGGGTCCGAATTTTATTACATAATTAGGATTTTT-TTTATGTTT-TCGATTTCTCAAAAAcat
gi|19 : agtttgttgcgaatttatagtttagtcccTTATCCCCGTTAGGGGTCCGATTTGTATTACATTTTTA----------TT---TTT-TCGATTTCTCAGAAAATTATGTAACGGCTTAATTGCTCCAGATTGTGCAA
gi|2 : gtTTT---TTT-TCGATTTCTTAGAAAATTTTGTAACGGTTTAATTGCTCCAGATAGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTAACTGTTATACTATAT-------ATATAGTC-TTTTA--AGGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTACAACACCTTTTCGTAAATGAAGACTGCATCGGAGCCATCAAATTGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTTGTAGTTGCTCTGAAATGA-TTTGAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-ATATAAACATAGTGATGGAAA---GTGATTTATTAGATGTTACAGTTTA-CAAACC----------------GT----------------AC---AA-CAAA-ACACA-----TAAGACAGGA--TAATATTATGTTTTAACTAACTTAT-TATT---TAGAATGT-------T-------AA----A--AG--------A-TACTTC--ACAGTTC-ATTCTCCAAGGTGAT--AAC-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTAGTTCAAAGATAGTT---CAATCTCCAAGATGAT-CTATATA----TA-GATGTA--C-C-TGAAATTTATTTTCAA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCCAGTCTTTTAGATTAAATT-AT-CATAGT---GGTAT-T----TTT---T------T-ATA----TAAAGCCT---TCAAGTTTAATTACCTATTGGAAAAAATTGTCTAA--AAGTATACATTTG---AAA-AA-ATAAATAAATAAA-AAGTTTATATTTTT--TATAGATAAATGTTCAATCACCTCAA-G-GTGAT-CTATTTAT----AT-TTTCCATGAAAAT-GTTCCGATAAATTATCTCCAAGCTGACGAATATATTTT---TACGTACATGACA-CCATGCGTAAACTAAGCAAAGAATCCATTAGTCACTCTCACTATAGCCTAGATATCACGAACAAACCTTCGTTTGAACATTATTTTGGTATATACATATACAACAGGGTCATTATAGGTTTCCATACCATTTTCTAATCTCTTTAAATAACCCGGCATAC------A---AT-ATAATAAGATTGCAGTTTGAAGCGAAGATAACGA-----TAA-TCAAG----TAAGTAAAGAATAACGATTACAAGAATGGA-----------GTATGGAAAGAAATTAACTTAACGAGATTGAAGTATTAATTG---A----C----AA-A-AAG-ATTACAAGAACAAAG----TTAGCATGG--AAGT-AAAC--CAGATAACAAGACTTG-CGTATGAAGTAAGT----AA-GGAAA-ACAAGATAAGAGTAAAAAGTCAGCATGGAAAGAAGC-AAGATAAAAAGATTGGAGTAGGTATGGAAAGAATGAATAAGACTTGGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GT
gi|20 : tTTATCCCCGCCAGAGGTCCGATTTTTATTACATTTTTTGCATTTTTA-TT---TTT-TCGATTTCTCAGGAgatcaaataga
gi|21 : tCTAGGGGTCCGATTTT----ACATTTTTGGCAGTTTTATT----TTT-TCGATTTCT
gi|22 : gctCCCCGCTAGGGGTCCGACTTTTATTACAtg
gi|23 : gtttattcccctaTTACCCCCGCTAGGGGTCCGATTTTTATAAC
gi|3 : agtAATATACAACACTCCTTCGTAAATGAAGACTGCGTAGGCGCCATGAAATGGTTTAAAATTGTTAGTGATAATCCTTGCAGTTT-TGCTGTT--------TCAGAAATGACTTTAACATATTAA--AGAAATGAAATAATAAAGTGTGTGTCAGATGTAGCCTGGAAAAT-GTGTAAGCAAACTTGTGGAAA---GTTTATTATTATATATTACAATGTA-CAATCC----------------GT----------------AC---AA-CAAA-ACACA-----TAAGACAGGA--TATTATTCTGTTTTAACTAACTT-T-AGTT---TAGAATGT-------C-------AA----A--AA--------T-TATTTC--TCAGTTC-AGTCTTTATGGTGAT--AAA-TAT---TTGT-----GAA-CA--T-T-TCA----AAG---------A------------AG------------------------------------------------------ACAGTT---AAATCTCCAAAATGAT-C--TAGA----TA-GATATA--C-C-TGAAGTTCAATCTCCA----------------ATTTTTCATTCCTGCACGTGTATTTAAAATACA--TGTCCAAGATGATCT---T-------------AAGAAAATTTCAGTTGTTTTTTTTTAATTAAAT-AAT-C-TTTTTTAGGTAT-T----TTTCTTTTAA--AT-A---------AGCGT---TCAAATTAGATAACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AAAG-AAAGAAA-AAA-AAGTTTATATATTT--CAAAG--A--TGTC----AATCTCAA-G-GTGAT-CTATATAT----AT-TTTCCATGAAAAT-GTTCCGATCGATGTTCTACAAACAGATGAATACATTTTAAATACATGCATG-CAACCATGCGTAGACTAAGCATAGAATCCATAATTTACCCTCGCTACAGCCTAGATATCACAAAAAAATCTTCGTTTGAACATTATTTTGGGATATGCATGTACAACGGGGTCACTGTAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGACATAC---AAGA-------TAATAAGATTGAAGTTTGAAGCGAAGATA-CTA--A-T-AA-TTAAG----TAAGGAAAGAATAAAGATAAAAAGAATGAA-----------GTATGGAAATAAATTAAGTTAACAAGATTGAAGTATCAATTGAAAA----A----AA--------TTACAAGGACTAAG----AAAGTATGG-AATGC-AAAC----GAT--CTAG---TG-AGTATGGAGCAAGT----AA-GGAAA-ACAAGATTGGATTATAAAGTCAGCGTTGAAAGAAGCAATGTTAAACAGATTGGCGTAAGTATGGAGAGAATGAAGAAAAATTTATTATAGATAA-AAGAAACACAGTACGAGTATTGT--GTGCTAGGATAGA
gi|4 : tcatcttcttc-TCTCCATGAAAAAAGTTTCGATCAATTATCTGCGAGTTGACGTATAGACTTTAAATACAaat
gi|4 : -ATAGTAAGAATGAAG------AC--AG-TAA-GA--A-TGAA-TTAAGGTCGTAAG------ACAAATAGAACAGTAATGAA-----------GCA-GGAAGTAAACAAAGGTAACATGAATAAAGTATGAACCTAAGATTACA----AG-T-AAGTATGGAAATAGCAAAG----TAAATATTG-AAA---AAGCA-TAGACTACAAGAATGA-AGGATGAAGTTAGT----ACTGAAAA-ACAAGATTAGAGTATAA-GTAAGCATCGAAAGAAGCAAAGATAACATGGTTGAAGCAAGTA-GAAAAGAACGAAGAACGGTTCGTAGCTGATAACAAAAAACATAGTTTGAGTATTGaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggatagtaagaatgaagacagtaagaatgaattaaggtcgtaagacaaatagaacagtaatgaagcaggaagtaaacaaaggtaacatgaataaagtatgaacctaagattacaagtaagtatggaaatagcaaagtaaatattgaaaaagcatagactacaagaatgaaggatgaagttagtactgaaaaacaagattagagtataagtaagcatcgaaagaagcaaagataacatggttgaagcaagtagaaaagaacgaagaacggttcgtagctgataacaaaaaacatagtttgagtattg
gi|5 : tctccatgaaaaaagtttcgatcaattatctgcgagttgacgtatagactttaaatacaaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggAACATTTTATAAGCACACTGATGGAAA---GTGATTTAGTATAGGTTACTAATTAATAAACC----------------GTTTTTGTTGT-------AT---GGGTGCA-ACACAATCTTTAAGACAAGG--TAATATTTTATTTTAAATG--TT-TGTATT---TTGACTGT-------T-----------------T--------A--ACTTA--ACAGTCA-AATCTTCAAGGTGAT--AGA-T------TGTGAACGATA-TA--T-T-TCATGGAAAGTTTAATCTCA------------AAG--------------TT-------------AAATAA------TATATTTCAAAGACAGTT---CAATATCTAAGATAAT-CATTATAGG--TATGAGGTATGC-A-TG-GATTCAATCT------------------------------------------------------------AGAAG---T---T-------------A--AAAA----AGTCGAGT-TTTTAAATTGAAC--AT-T-TAAA---GATATATATAATTT---ATAATTAT-GTATCTTTAAAA--T---TGAAGTCCAGTTATCCGTAGACAAATATAACATAATGAAGTATGAAAATG---AAGTAT-G-AAAGCAA-AAATAACCTTA-ACAAT----ATGG--AAAGAATTAATAATATTAA-GAGTGA
gi|6 : ataGTCAGATGTAGCCCGGAATATTATATAAGCGAACTGATGGAAA---GTGTTTAAGTAGATAGTATTGTTGA-CAAACC----------------GTTGTTTGTTGTATGGGTAC---AA-CAAA-ATACA-----TAAGATTCGA--TAAGATTTGATTTTAACTAA--T-T-TATT---GAGAATGT-------T-------AA----A--TTTTAAACCAA-TATTAA--ACAGTTC-TGTCTCCAAGGTGAT--AGA-TTT---TTGC-----ATA-TA--T-T-TCG----AAA---------A------------------------------T-------------AAATGT------TATATTTCAAAGACAATT---AAATTTCCTAAATGAA-T--TACATGTGTA-CATGTA--CACATAAAATTCAATTTCCAAGTTTATTGTGCGTATAT---------------------TTAA----AAACTCTCCAAGAAAATCTAAATATATAGATTTAAAAAGAAAA----AGTC------TTTATATTGAATTA--------------TAT-C----TTT---TTGA--A----A----AAAAGTCCCAGTCGAGTTCTATTATCTATTGG-AAAAATCATCT
gi|7 : CGACATATGTAAAGA---ACCAAAACAAAAATAAAATAGGAAGCACATATAACAACAA-TCAAGTTAA-----TATAGAAAGAAAAAAGATAACAAGAATAAAATATGAAGTTTGTATGGAAGGAAATAAAAATAACAAGATTGAAGTATGAAGTAAAAA----T----GA-A-AAG-A-------AACAAAGATTACAAGCATGG-AAAGA-AAAA--TAGATTACAAT-ATTGAAGTATGAATTAAGTCCGGAA-AGAAACACAAGATTGAAGTATAAA-TTAACATGGAAAAAAGAAAATATATGAAAATTGGAGTATGCATGGAAATAATG-AGAAAGATTCGTAGAAGATAAAAAGAAATACGGTTTGAATG-TGTAAGCCATAGTAGAAAcattacttatattatgtatttcaaagaa
gi|8 : ttgttataaatatgcatttTATTATATTTTA-------T-T-TGTTGCACATATTGT-------T-------AA----ATAAT--------G-TATTTCTAAGAATTCCAATCTCCAAGATAATCTACA-TGTACATTGT-----ATA-TA--TCT-TTA----AAA---------A------------ATGCCCAGTTACCGACTTT-------------AAAT-C------TGTTTTTCAAAGACAGTT---CAATCTCCACGATGATAC--T------------TTTA------TGAAAAT--ATCTCCA---------------------------------------TTAA-----A-----CCATGATTATCT---gt
gi|8 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgTTT--CAAAG--ACA-GTTCAAT---CTCCACG-ATGATACT-TTTATGAAAATATCTCCATTAAA------CC-AT-GATTATCTCCTAGCTTACGTATAAATTTTAAATATAcctagcttacgtataaattttaaatataaaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
gi|9 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgtattatattttatttgttgcacatattgttaaataatgtatttctaagaattccaatctccaagataatctacatgtacattgtatatatctttaaaaaatgcccagttaccgactttaaatctgtt--AGAAATGTAATAATAAAGTTTGAGTCATATGTCGCCCAAAACATTTTATAAGTATACTGATGGTAA---GTGATTTAGTACAGGTTACTATGTA-CAAACCTTTGTTTGTTGTATGTGT----------------GC---AA-CAAA-ATACA-----TAAGACAGGA--TACTATTTTATTTTA--------------T---TAGAATGT-------TTAACTGTAA----A--AT--------AATATTTC--ACAATTG-AGTCTCCAAGATGAT--AGA-TAT---TTTT-----ATA-CATGT-T-TCA----AAG---------A------------AAG--------------TTTAATCTCCCAGTAAAATGTTATACATGTATTTCGAAGACAGTTGTACAATCTCCCAGATGCT-C--TACA----TA-GGTATA--aaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 11 444444444444 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888 5555555555 11 11 777777777777777777777777777777777777777777 11111 1111111 444444444444444444444444444444444444 11111 1111 888888888888888888888888888888888888888888888888888888 11111111 1111 1111 111111 11111111111111111111111111111111111111111111111111111 44444444444444444 1111 11111 555555555555555555555555555555555555555555555555 111111 11 111 1 111 1 1 1111 11 1 2222 111 1 1 1 33 11 4444444444444 333333 11111 22222222222 33333333333333 11111 111 111 11111 11
lowQualScore : 0 2 0 00 11 11 888 5 33 2 55 3 444444444444 0 22 11111111111111111111111111111111111111111111111111111111111111111111111111111111 1 7 4444444444 6 11 1 22 888 1 1 5 444444444444444444444444444444444444444444 2 4 11111 66 1 1111111 4 4 777 333333333333333333333333333333333333 55 66 55 1 4 1 777 22222 5 66 5 5 0000 333333333333333333333333333333333333333333333333333333 88888888 888 3333 0 7777 5 444444 1 66666666666666666666666666666666666666666666666666666 66666666666666666 0 7777 00000 555555555555555555555555555555555555555555555555 444444 1 5 33 777 0 444 0 0 3 3333 1 11 777 3 5 8 8 0 3 1 1111 8 222 66 1 1 0 6 3 3 0 2 7 7 44 7 88 1111111111111 1 222 33 0 55 111111 8 55555 2 77777777777 0 44 1 55555555555555 5 1 4 0 22222 77 333 777 6 5 5 33333 5 5 0 0 1 1 0 2 33 1
lowQualScore : . . . .. .. .. ... . .. . .. . ............ . .. ................................................................................ . . .......... . .. . .. ... . . . .......................................... . . ..... .. . ....... . . ... .................................... .. .. .. . . . ... ..... . .. . . .... ...................................................... ........ ... .... . .... . ...... . ..................................................... ................. . .... ..... ................................................ ...... . . .. ... . ... . . . .... . .. ... . . . . . . . .... . ... .. . . . . . . . . . . .. . .. ............. . ... .. . .. ...... . ..... . ........... . .. . .............. . . . . ..... .. ... ... . . . ..... . . . . . . . . .. .
lowQualScore : 7 2 1 44 33 66 888 0 55 5 88 2 888888888888 0 88 00000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3 7777777777 7 00 0 66 888 0 0 0 444444444444444444444444444444444444444444 0 4 11111 11 0 5555555 0 0 000 777777777777777777777777777777777777 55 55 55 0 0 0 888 55555 0 99 0 0 6666 222222222222222222222222222222222222222222222222222222 00000000 888 9999 2 5555 0 777777 0 33333333333333333333333333333333333333333333333333333 77777777777777777 8 0000 00000 666666666666666666666666666666666666666666666666 444444 4 6 88 555 0 000 0 0 2 2222 4 00 000 2 6 0 0 0 2 0 2222 0 666 44 4 0 8 7 3 3 7 0 3 3 00 3 33 0000000000000 4 444 88 8 88 888888 0 22222 5 11111111111 6 66 0 77777777777777 7 6 3 7 44444 11 777 666 6 0 7 66666 7 7 4 7 0 0 3 5 88 0
consensus : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTATCTGTTATGCTATAT-------A----GTC-TTTTACCAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATACAACACTCCTTCGTAAATGAAGACTGCGTCGGCGCCATNAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTT--------TCAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAANATTATATAAGCATACTGATGGAAA---GTGATTTAGTAGANGTTACNATTTA-CAAACC----------------GT----------------AC---GA-CGAA-ACACA-----TAAGACAGGA--TAATATTNTATTTTAACTAACTT-T-TATT---TAGAATGT-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTCTCCAAGGTGAT--ANA-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGAT-C--TACA----TA-GATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCGAGTCTTTTAAATTAAATTAAT-C-TAGT---GGTAT-T----TTT---TTAA--AT-ATA----TAAAGCCT---TCAAGTTCAATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTT--CATAG--AAATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAN-GTTCCGATCGATTATCTCCAAGCTGACGAATANATTTTAAATACATGCATG-CA-CCATGCGTAGACTAAGCATAGAATCCATTATTCACCCTCGCTACAGCCTAGATATCACGAAAAAACCTTCGTTTGAACATTATTTTGG-ATATGCATGTACAACGGGGTCACTATAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGGCATAC---AAGA---AT-ATAATAAGATTGAAGTTTGAAGCGAAGATAACGA--A-TCAA-TTAAG----TAAGGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGTTAACAAGATTGAAGTATNAATTGAAAA----A----AA-A-AAG-ATTACAAGAACAAAG----TAAGTATGG-AAAGT-AAAC--CAGATNACAAGAATTG-AGTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTNGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTATAAA
Reference ( family-544 ) : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTATCTGTTATGCTATAT-------A----GTC-TTTTACCAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATACAACACTCCTTCGTAAATGAAGACTGCGTCGGCGCCATNAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTT--------TCAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAANATTATATAAGCATACTGATGGAAA---GTGATTTAGTAGANGTTACNATTTA-CAAACC----------------GT----------------AC---GA-CGAA-ACACA-----TAAGACAGGA--TAATATTNTATTTTAACTAACTT-T-TATT---TAGAATGT-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTCTCCAAGGTGAT--ANA-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGAT-C--TACA----TA-GATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCGAGTCTTTTAAATTAAATTAAT-C-TAGT---GGTAT-T----TTT---TTAA--AT-ATA----TAAAGCCT---TCAAGTTCAATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTT--CATAG--AAATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAN-GTTCCGATCGATTATCTCCAAGCTGACGAATANATTTTAAATACATGCATG-CA-CCATGCGTAGACTAAGCATAGAATCCATTATTCACCCTCGCTACAGCCTAGATATCACGAAAAAACCTTCGTTTGAACATTATTTTGG-ATATGCATGTACAACGGGGTCACTATAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGGCATAC---AAGA---AT-ATAATAAGATTGAAGTTTGAAGCGAAGATAACGA--A-TCAA-TTAAG----TAAGGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGTTAACAAGATTGAAGTATNAATTGAAAA----A----AA-A-AAG-ATTACAAGAACAAAG----TAAGTATGG-AAAGT-AAAC--CAGATNACAAGAATTG-AGTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTNGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTATAAA
gi|1 : TTACCCCTTCTGGCGGTCCGATTTTTATTACATTTTTGGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCAAGACTGTGCAATCGGTAATTACCAGCGTCACATAACGCGGTAGGTATATAAAATTCATTGTTATAATTTGTTATG--ATAT-------A----GTC-TTTTACTAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAAACAACACTCCTTCGTAAATGAAGACTGCGCCGACGCCATAAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTAAACTG-----------CAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-ATACAAGCATACTGATGGAAA---GTGATTTATTAGATGTTACAATTTA-CAAACC----------------GT----------------AT---AA-CAAA-ACACA-----TAAGACAGGA--TAGTATTCTGTTTTAACTAACTT-T-TATT---AAGAATGT-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTTTCCAAGGTGAT--AAC-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGA--------------TT-------------AAATGC------TGTATTTCAAAGATAGTT---CAATCTCCAAGATAAT-C--TACA----TA-AATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TATCCAAGCTGATCT---T-------------AAGAAAT----AGTTGAGTCTTCTAAATTAAATTAGTGG-TAGT---GGTAT-T----TTT---TTAA--ATCATAG---TAAAGTCT---TCAAGTTCAATTACCTTTAAGAAAAAATCATATAA--AAGTATAAATTTGAAAAAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTTTATATAT--AAATGTTCAATAATCTCAA-G-GTGAT-CTATATAT----AT-TTTCCATGAAAAG-GTTCCGATCCATTATCTCCAGGCTGACGAATACATTTTAGATACATG---G-CA-CCATGCGTAGACTAAGAATAGAATCCATTATTCATCCTCATTACAGCCTAGATCTCACGAAAAAA----------AAC-TTA---TGG-----GCATGTACAACGGGGTCACTATAGG----------ATTTTCTA--CTATTTAAATAACCCGGCATAC---ATGATACAT-GTAATAAGATTGAAGTTTGAAGCGAAGATAAAGAT-ATTCAA-TTAAG----TAAGGAAAGAATAAAGATAACAAGAATGAG-----------GTATAGAACGCAATTAAGTTTACAAGATTGAAGTATTAATTGAAAA----ACAGTAACA-AAG-ATTACAAGAACAAAG----TAAGTATGG-AAAGTAAAAC--CAGATTACAAGAATTG-AGTATGAAGTAAGT----AA-GGAAA-ACAAGATTGAAGTATAAACTCAGCATGGAAAGAATCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAATAAAAATTGGTTTTAGATACCAGGAAACACAGTATGAGTATTGT--GTTCTAGTATAAA
gi|10 : AAA----TAATGAAAGAATAAAGACAACAACAATGCA-----------GTATG--AAGAATTTAAGTTAAAAAGATCGAAATATTTATTGAAAA----A----A--------ATTA--------------------------AATT-AAAC--CTGATAACAAAAATTG-AGTATGAAGTAAG---------GGAA-TCAAGATTGAAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAATGATTGGAGTAAGTATGGGAAGAAAGAATAAAAACTGGTTATAGATAACAAGAAACACAGTATGAGTATTtt
gi|11 : TTACCCCCGCTAGCGGTCCGA-----A------TTTTAACATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTAACCAGCGTCACATAACGCGATAGGGATATAAAATTCC---TTATTATCTGTTATGCCATACACAGTGAA----GTCTTTTTACCAGGT---tttctgataggatagaaat
gi|12 : gaATTAAGTAGAACTGAAATAATAAAGTTTGTATCAGATGTAACCCGGAACATTATACAAGCATACTTATGGAAT---GTGATTTAGTAGAGGTTACGTATCA-CAAACC----------------GT----------------gtgggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|13 : aatcaaagtgtttaaagcactaaaacctcggtaaacactgA-ATACA-----CGAGACAAGA--TAATATTGTATGTTAACTAACTT-T-TATT---TAGAATGT-------T-------TA----A------------C-TGTTTC--ATAGTT--AGTCTCCAAAATGAT--ACA-TAT---TTGT-----GTATTA--T-TCTCA----AAA---------ACGTTCAATCGACAGG--------------TT-------------AAACGT------TATACATCAAAGACAGCT---CAGTCTACAAGATGAT-A--TACA----TA-GATATA--C-tatttgttgtatgggtacagtgataagcagtgagtgacctaatgtaataaggcaggatgctattttatttta
gi|14 : -----------GTGTAGAAAGAAACCAA-------AAATTGAAGTATAAATGGAAAT----A----AA-CTAAG-ATAACAAGAACAACA----TAGGTATGGTAAAG---AATTATAGATAACAAGAATGA-AGTATTAACTGA------AA-GAAAA-AAAAGATTGTAGTAC-AAGTCATCATGGGGA-AAACAAATATAACAAGATTGGGG
gi|15 : AAGCATATTGATGGATATTTATCATTAAGCTGAGGTTATTATTTA-CAAACC----------------TT----------------TCTTTGT-TGGATGCGCA-----CGAGAAAGTACATAATATTTTATTTTGACTAACAT-T-TATT---TAGAATGTTTAACTGT-------AA----A--ATA-------A-CATTTC--ATAGCTC-AGTCTCC-AGATGAT--ATA-Tgtg
gi|16 : ctttgTTTATTT---TTTGTCGATTTCTCAGAAAATTATGTAACGGTTTGATTGCTCCAGATTATACAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATATAATTCTTTTTTATTATTTGGTATG-TA-AT-------A----GTC-TTTTACCAGGT---
gi|17 : A-CAAA-ATACA-----TAAGGCAGAA--TTACATTTTATGTT-------CT-T-TGTT---GATAGTGT-------TT------AATTGTA--AA--------A-TATTTT--AAAGTTA-AGTCTCCAAGTTGAT--AAACCAT---TT
gi|18 : ataTTACCCCT-CTAGGGGTCCGAATTTTATTACATAATTAGGATTTTT-TTTATGTTT-TCGATTTCTCAAAAAcat
gi|19 : agtttgttgcgaatttatagtttagtcccTTATCCCCGTTAGGGGTCCGATTTGTATTACATTTTTA----------TT---TTT-TCGATTTCTCAGAAAATTATGTAACGGCTTAATTGCTCCAGATTGTGCAA
gi|2 : gtTTT---TTT-TCGATTTCTTAGAAAATTTTGTAACGGTTTAATTGCTCCAGATAGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTAACTGTTATACTATAT-------ATATAGTC-TTTTA--AGGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTACAACACCTTTTCGTAAATGAAGACTGCATCGGAGCCATCAAATTGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTTGTAGTTGCTCTGAAATGA-TTTGAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-ATATAAACATAGTGATGGAAA---GTGATTTATTAGATGTTACAGTTTA-CAAACC----------------GT----------------AC---AA-CAAA-ACACA-----TAAGACAGGA--TAATATTATGTTTTAACTAACTTAT-TATT---TAGAATGT-------T-------AA----A--AG--------A-TACTTC--ACAGTTC-ATTCTCCAAGGTGAT--AAC-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTAGTTCAAAGATAGTT---CAATCTCCAAGATGAT-CTATATA----TA-GATGTA--C-C-TGAAATTTATTTTCAA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCCAGTCTTTTAGATTAAATT-AT-CATAGT---GGTAT-T----TTT---T------T-ATA----TAAAGCCT---TCAAGTTTAATTACCTATTGGAAAAAATTGTCTAA--AAGTATACATTTG---AAA-AA-ATAAATAAATAAA-AAGTTTATATTTTT--TATAGATAAATGTTCAATCACCTCAA-G-GTGAT-CTATTTAT----AT-TTTCCATGAAAAT-GTTCCGATAAATTATCTCCAAGCTGACGAATATATTTT---TACGTACATGACA-CCATGCGTAAACTAAGCAAAGAATCCATTAGTCACTCTCACTATAGCCTAGATATCACGAACAAACCTTCGTTTGAACATTATTTTGGTATATACATATACAACAGGGTCATTATAGGTTTCCATACCATTTTCTAATCTCTTTAAATAACCCGGCATAC------A---AT-ATAATAAGATTGCAGTTTGAAGCGAAGATAACGA-----TAA-TCAAG----TAAGTAAAGAATAACGATTACAAGAATGGA-----------GTATGGAAAGAAATTAACTTAACGAGATTGAAGTATTAATTG---A----C----AA-A-AAG-ATTACAAGAACAAAG----TTAGCATGG--AAGT-AAAC--CAGATAACAAGACTTG-CGTATGAAGTAAGT----AA-GGAAA-ACAAGATAAGAGTAAAAAGTCAGCATGGAAAGAAGC-AAGATAAAAAGATTGGAGTAGGTATGGAAAGAATGAATAAGACTTGGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GT
gi|20 : tTTATCCCCGCCAGAGGTCCGATTTTTATTACATTTTTTGCATTTTTA-TT---TTT-TCGATTTCTCAGGAgatcaaataga
gi|21 : tCTAGGGGTCCGATTTT----ACATTTTTGGCAGTTTTATT----TTT-TCGATTTCT
gi|22 : gctCCCCGCTAGGGGTCCGACTTTTATTACAtg
gi|23 : gtttattcccctaTTACCCCCGCTAGGGGTCCGATTTTTATAAC
gi|3 : agtAATATACAACACTCCTTCGTAAATGAAGACTGCGTAGGCGCCATGAAATGGTTTAAAATTGTTAGTGATAATCCTTGCAGTTT-TGCTGTT--------TCAGAAATGACTTTAACATATTAA--AGAAATGAAATAATAAAGTGTGTGTCAGATGTAGCCTGGAAAAT-GTGTAAGCAAACTTGTGGAAA---GTTTATTATTATATATTACAATGTA-CAATCC----------------GT----------------AC---AA-CAAA-ACACA-----TAAGACAGGA--TATTATTCTGTTTTAACTAACTT-T-AGTT---TAGAATGT-------C-------AA----A--AA--------T-TATTTC--TCAGTTC-AGTCTTTATGGTGAT--AAA-TAT---TTGT-----GAA-CA--T-T-TCA----AAG---------A------------AG------------------------------------------------------ACAGTT---AAATCTCCAAAATGAT-C--TAGA----TA-GATATA--C-C-TGAAGTTCAATCTCCA----------------ATTTTTCATTCCTGCACGTGTATTTAAAATACA--TGTCCAAGATGATCT---T-------------AAGAAAATTTCAGTTGTTTTTTTTTAATTAAAT-AAT-C-TTTTTTAGGTAT-T----TTTCTTTTAA--AT-A---------AGCGT---TCAAATTAGATAACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AAAG-AAAGAAA-AAA-AAGTTTATATATTT--CAAAG--A--TGTC----AATCTCAA-G-GTGAT-CTATATAT----AT-TTTCCATGAAAAT-GTTCCGATCGATGTTCTACAAACAGATGAATACATTTTAAATACATGCATG-CAACCATGCGTAGACTAAGCATAGAATCCATAATTTACCCTCGCTACAGCCTAGATATCACAAAAAAATCTTCGTTTGAACATTATTTTGGGATATGCATGTACAACGGGGTCACTGTAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGACATAC---AAGA-------TAATAAGATTGAAGTTTGAAGCGAAGATA-CTA--A-T-AA-TTAAG----TAAGGAAAGAATAAAGATAAAAAGAATGAA-----------GTATGGAAATAAATTAAGTTAACAAGATTGAAGTATCAATTGAAAA----A----AA--------TTACAAGGACTAAG----AAAGTATGG-AATGC-AAAC----GAT--CTAG---TG-AGTATGGAGCAAGT----AA-GGAAA-ACAAGATTGGATTATAAAGTCAGCGTTGAAAGAAGCAATGTTAAACAGATTGGCGTAAGTATGGAGAGAATGAAGAAAAATTTATTATAGATAA-AAGAAACACAGTACGAGTATTGT--GTGCTAGGATAGA
gi|4 : tcatcttcttc-TCTCCATGAAAAAAGTTTCGATCAATTATCTGCGAGTTGACGTATAGACTTTAAATACAaat
gi|4 : -ATAGTAAGAATGAAG------AC--AG-TAA-GA--A-TGAA-TTAAGGTCGTAAG------ACAAATAGAACAGTAATGAA-----------GCA-GGAAGTAAACAAAGGTAACATGAATAAAGTATGAACCTAAGATTACA----AG-T-AAGTATGGAAATAGCAAAG----TAAATATTG-AAA---AAGCA-TAGACTACAAGAATGA-AGGATGAAGTTAGT----ACTGAAAA-ACAAGATTAGAGTATAA-GTAAGCATCGAAAGAAGCAAAGATAACATGGTTGAAGCAAGTA-GAAAAGAACGAAGAACGGTTCGTAGCTGATAACAAAAAACATAGTTTGAGTATTGaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggatagtaagaatgaagacagtaagaatgaattaaggtcgtaagacaaatagaacagtaatgaagcaggaagtaaacaaaggtaacatgaataaagtatgaacctaagattacaagtaagtatggaaatagcaaagtaaatattgaaaaagcatagactacaagaatgaaggatgaagttagtactgaaaaacaagattagagtataagtaagcatcgaaagaagcaaagataacatggttgaagcaagtagaaaagaacgaagaacggttcgtagctgataacaaaaaacatagtttgagtattg
gi|5 : tctccatgaaaaaagtttcgatcaattatctgcgagttgacgtatagactttaaatacaaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggAACATTTTATAAGCACACTGATGGAAA---GTGATTTAGTATAGGTTACTAATTAATAAACC----------------GTTTTTGTTGT-------AT---GGGTGCA-ACACAATCTTTAAGACAAGG--TAATATTTTATTTTAAATG--TT-TGTATT---TTGACTGT-------T-----------------T--------A--ACTTA--ACAGTCA-AATCTTCAAGGTGAT--AGA-T------TGTGAACGATA-TA--T-T-TCATGGAAAGTTTAATCTCA------------AAG--------------TT-------------AAATAA------TATATTTCAAAGACAGTT---CAATATCTAAGATAAT-CATTATAGG--TATGAGGTATGC-A-TG-GATTCAATCT------------------------------------------------------------AGAAG---T---T-------------A--AAAA----AGTCGAGT-TTTTAAATTGAAC--AT-T-TAAA---GATATATATAATTT---ATAATTAT-GTATCTTTAAAA--T---TGAAGTCCAGTTATCCGTAGACAAATATAACATAATGAAGTATGAAAATG---AAGTAT-G-AAAGCAA-AAATAACCTTA-ACAAT----ATGG--AAAGAATTAATAATATTAA-GAGTGA
gi|6 : ataGTCAGATGTAGCCCGGAATATTATATAAGCGAACTGATGGAAA---GTGTTTAAGTAGATAGTATTGTTGA-CAAACC----------------GTTGTTTGTTGTATGGGTAC---AA-CAAA-ATACA-----TAAGATTCGA--TAAGATTTGATTTTAACTAA--T-T-TATT---GAGAATGT-------T-------AA----A--TTTTAAACCAA-TATTAA--ACAGTTC-TGTCTCCAAGGTGAT--AGA-TTT---TTGC-----ATA-TA--T-T-TCG----AAA---------A------------------------------T-------------AAATGT------TATATTTCAAAGACAATT---AAATTTCCTAAATGAA-T--TACATGTGTA-CATGTA--CACATAAAATTCAATTTCCAAGTTTATTGTGCGTATAT---------------------TTAA----AAACTCTCCAAGAAAATCTAAATATATAGATTTAAAAAGAAAA----AGTC------TTTATATTGAATTA--------------TAT-C----TTT---TTGA--A----A----AAAAGTCCCAGTCGAGTTCTATTATCTATTGG-AAAAATCATCT
gi|7 : CGACATATGTAAAGA---ACCAAAACAAAAATAAAATAGGAAGCACATATAACAACAA-TCAAGTTAA-----TATAGAAAGAAAAAAGATAACAAGAATAAAATATGAAGTTTGTATGGAAGGAAATAAAAATAACAAGATTGAAGTATGAAGTAAAAA----T----GA-A-AAG-A-------AACAAAGATTACAAGCATGG-AAAGA-AAAA--TAGATTACAAT-ATTGAAGTATGAATTAAGTCCGGAA-AGAAACACAAGATTGAAGTATAAA-TTAACATGGAAAAAAGAAAATATATGAAAATTGGAGTATGCATGGAAATAATG-AGAAAGATTCGTAGAAGATAAAAAGAAATACGGTTTGAATG-TGTAAGCCATAGTAGAAAcattacttatattatgtatttcaaagaa
gi|8 : ttgttataaatatgcatttTATTATATTTTA-------T-T-TGTTGCACATATTGT-------T-------AA----ATAAT--------G-TATTTCTAAGAATTCCAATCTCCAAGATAATCTACA-TGTACATTGT-----ATA-TA--TCT-TTA----AAA---------A------------ATGCCCAGTTACCGACTTT-------------AAAT-C------TGTTTTTCAAAGACAGTT---CAATCTCCACGATGATAC--T------------TTTA------TGAAAAT--ATCTCCA---------------------------------------TTAA-----A-----CCATGATTATCT---gt
gi|8 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgTTT--CAAAG--ACA-GTTCAAT---CTCCACG-ATGATACT-TTTATGAAAATATCTCCATTAAA------CC-AT-GATTATCTCCTAGCTTACGTATAAATTTTAAATATAcctagcttacgtataaattttaaatataaaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
gi|9 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgtattatattttatttgttgcacatattgttaaataatgtatttctaagaattccaatctccaagataatctacatgtacattgtatatatctttaaaaaatgcccagttaccgactttaaatctgtt--AGAAATGTAATAATAAAGTTTGAGTCATATGTCGCCCAAAACATTTTATAAGTATACTGATGGTAA---GTGATTTAGTACAGGTTACTATGTA-CAAACCTTTGTTTGTTGTATGTGT----------------GC---AA-CAAA-ATACA-----TAAGACAGGA--TACTATTTTATTTTA--------------T---TAGAATGT-------TTAACTGTAA----A--AT--------AATATTTC--ACAATTG-AGTCTCCAAGATGAT--AGA-TAT---TTTT-----ATA-CATGT-T-TCA----AAG---------A------------AAG--------------TTTAATCTCCCAGTAAAATGTTATACATGTATTTCGAAGACAGTTGTACAATCTCCCAGATGCT-C--TACA----TA-GGTATA--aaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
blockSeqs : A AA AT ATG G TT T CC T ACAGTGAA T CC GGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN C A TTGTAGTTGC C GT C TA TTT G G A GTTGTTTGTTGTATGGGTACAA G T ATCTT CA G ACTAACT A G GCA TTAACTGTAAAATAA TA CC CT C C A ACA GAACG T TG C C TGGA AATGCCCAGTTACCGACTTT GTTATACA GTA CTA TGTG T TGCA T ATTTTTCATTCCTGCACGTGTATTTAAAATACATG AAATATATAGATTTAAA TTTC CAGTC ATTTAAAGATATATATAATTTATAATTATGTATCTTT TCCCAG T A TG . T AT T T T TT T AT AAT C C C A A A T GAAA A AAA AA A T C A A C A T TA T AT GTAAAGAACC T TTT GA AC CAATC G GGTCG G ATATGAAGTTT GT T TTACAAGT T T C ATTAC TA TT TAT A A A TCCGG T C T G C AA G
blockSeqs : T AG AT . . CT G CT T ATATA . CC G . TT . . A TT . G T . TTTGTTTGTTGTATGTGTGCAA A . . . T ACTAACA . . . TAAATTTTAAACCAA . C . T . A . . . . . . . AAAGTTTAATCTCCCAGTA GT . CAT GG . CACA C AGTTTATTGTGCGTATATTTAAAAACTC T . GTTTT AATCTTTTTTAGGTATTTTTCTTTTAAATA CCT T A . . . AG . . T TC A . AAG T A . . . A A . . AT CG A C C . . T A T GA T . AAGA T TTT GA AC ATG . A T . CT A AAACT . A C T A GT AT A A . T . . T G C . C
blockSeqs : T TG AT . . C . T . A . . . A TA . T A . GTTTTTGTTGTATGGG A . . . T ACTAACT . . . TTAACTGTAAAATAA . A . A . A . . . . . . . ACGTTCAATCGACAGGTT GC . AC . . CC C ATTTAACATG T . GAGT TATCATAGTGGTATTTTTTTATAT CGT A C . . . G . . . TC T . CA C A . . . . T . . AT CA T G AAT A TAG AC C AT . G G . GT T CAAA . T C T A GC C A A . T . . G T C .
blockSeqs : T GG T . . . C TT . T A . TTTCTTTGT A . . . A ACTAACT . . . TTAATTGTAAAA . C . A . A . . . . . . . TTTAATCTCAAAGTT AA . A . . CC C TTAAA T . . TATATCTTTTTGAAAA T T . . A . T . . . . . . G T A A . . A T . G G . GG C TGAA . T A A A GA C T A . T . . G C A
blockSeqs : C A A . . T A . G T . GTACAA G . . . C AATGT . . . TAAATAATG . C . A . T . . . . . . . AAGGTT GT . C . . . . . . . . AA G AAA . G . T . G T T . . . . . G C .
blockSeqs : T . . . C G . T T . GTACAA A . . . T ACTAA . . . TAAAAGA . A . G . G . . . . . . . AAG C . T . . . . G AA . . . . . . . . . . . . .
blockSeqs : . . . . G T . A . . . T C . . . CAAAAAT . C . G . A . . . . . . . AT . . C . .
blockSeqs : . . . A . . . . TTAAC . G . C . . .
blockSeqs : T . . . . TTA . . . G .
blockSeqCons : TN GTTTTTGTTGTATGGACAA*********************** TTAACTTAAAATAA********************** CC**** ATCTGGTATNTTTTTAAAT***************************** TC** AC AT**** AAA*********** GT*
originalCons : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTATCTGTTATGCTATAT-------A----GTC-TTTTACCAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATACAACACTCCTTCGTAAATGAAGACTGCGTCGGCGCCATNAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTT--------TCAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAANATTATATAAGCATACTGATGGAAA---GTGATTTAGTAGANGTTACNATTTA-CAAACC----------------GT----------------AC---GA-CGAA-ACACA-----TAAGACAGGA--TAATATTNTATTTTAACTAACTT-T-TATT---TAGAATGT-------T-------AA----A--AT--------A-TATTTC--ACAGTTC-AGTCTCCAAGGTGAT--ANA-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGAT-C--TACA----TA-GATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCGAGTCTTTTAAATTAAATTAAT-C-TAGT---GGTAT-T----TTT---TTAA--AT-ATA----TAAAGCCT---TCAAGTTCAATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTT--CATAG--AAATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAN-GTTCCGATCGATTATCTCCAAGCTGACGAATANATTTTAAATACATGCATG-CA-CCATGCGTAGACTAAGCATAGAATCCATTATTCACCCTCGCTACAGCCTAGATATCACGAAAAAACCTTCGTTTGAACATTATTTTGG-ATATGCATGTACAACGGGGTCACTATAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGGCATAC---AAGA---AT-ATAATAAGATTGAAGTTTGAAGCGAAGATAACGA--A-TCAA-TTAAG----TAAGGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGTTAACAAGATTGAAGTATNAATTGAAAA----A----AA-A-AAG-ATTACAAGAACAAAG----TAAGTATGG-AAAGT-AAAC--CAGATNACAAGAATTG-AGTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTNGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTATAAA
finalCons : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTATCTGTTATGCTATAT-------A----GTC-TTTTACCAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATACAACACTCCTTCGTAAATGAAGACTGCGTCGGCGCCATNAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTT--------TCAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAANATTNTATAAGCATACTGATGGAAA---GTGATTTAGTAGANGTTACNATTTA-CAAACCGTTTTTGTTGTATGGACAA-----------------------CGAA-ACACA-----TAAGACAGGA--TAATATTNTATTTTAACTAACTT-T-TATT---TAGAATGTTTAACTTAAAATAA----------------------TATTTC--ACAGTTC-AGTCTCCAAGGTGAT--ANA-TAT---TTGT-----ATA-CA--T-T-TCA----AAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGAT-C--TACA----TA-GATGTACC----TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCGAGTCTTTTAAATTAAATATCTGGTATNTTTTTAAAT-----------------------------AAAGCCT---TCAAGTTCAATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTTC--ATAG--AAATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAN-GTTCCGATCGATTATCTCCAAGCTGACGAATANATTTTAAATACATGCATG-CA-CCATGCGTAGACTAAGCATAGAATCCATTATTCACCCTCGCTACAGCCTAGATATCACGAAAAAACCTTCGTTTGAACATTATTTTGG-ATATGCATGTACAACGGGGTCACTATAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGGCATAC---AAGA---AT-ATAATAAGATTGAAGTTTGAAGCGAAGATAACGAAT----AA-TTAAG----TAAGGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGTTAACAAGATTGAAGTATNAATTGAAAAAAA-----------AAG-ATTACAAGAACAAAG----TAAGTATGG-AAAGT-AAAC--CAGATNACAAGAATTG-AGTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTNGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTATAAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 11 444444444444 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888 5555555555 11 11 55555555555555555 1111111111111111111111111 1111111 444444444444444444 11111 1111 888888888888888888888888888888888888888888888888888888 11111111 1111 1111 111111 11111111111111111111111111111111111111111111111111111 44444444444444444 1111 11111 99999999999999999999999999999999999999999999999999999999 111111 11 111 1 111 1 1 1111 11 1 2222 111 1 1 1 33 11 4444444444444 222222222 1111 111 22222222222 4444444444444444444444444444444444444 11111 111 111 11111 11
lowQualScore : 0 2 0 00 11 11 888 5 33 2 55 3 444444444444 0 22 11111111111111111111111111111111111111111111111111111111111111111111111111111111 1 7 4444444444 6 11 1 33 888 1 66 44444444444444444 666 9999999999999999999999999 4 0 1 0000000 4 777 555555555555555555 55 66 55 1 4 777 22222 5 66 5 5 0000 333333333333333333333333333333333333333333333333333333 88888888 888 3333 0 7777 5 444444 1 66666666666666666666666666666666666666666666666666666 66666666666666666 0 7777 00000 99999999999999999999999999999999999999999999999999999999 0 444444 1 5 33 777 0 444 0 0 3 3333 1 11 777 3 5 8 8 0 3 1 1111 8 222 66 1 1 0 6 3 3 0 2 7 7 44 7 88 1111111111111 1 222 33 0 333333333 4444 6 111 2 77777777777 0 44 1 0000000000000000000000000000000000000 22222 77 333 777 6 4 5 33333 5 5 0 0 1 1 0 2 33 1
lowQualScore : . . . .. .. .. ... . .. . .. . ............ . .. ................................................................................ . . .......... . .. . .. ... . .. ................. ... ......................... . . . ....... . ... .................. .. .. .. . . ... ..... . .. . . .... ...................................................... ........ ... .... . .... . ...... . ..................................................... ................. . .... ..... ........................................................ . ...... . . .. ... . ... . . . .... . .. ... . . . . . . . .... . ... .. . . . . . . . . . . .. . .. ............. . ... .. . ......... .... . ... . ........... . .. . ..................................... ..... .. ... ... . . . ..... . . . . . . . . .. .
lowQualScore : 7 2 1 44 33 66 888 0 55 5 88 2 888888888888 0 88 00000000000000000000000000000000000000000000000000000000000000000000000000000000 0 3 7777777777 7 00 0 00 888 0 00 77777777777777777 888 7777777777777777777777777 0 7 0 6666666 0 000 555555555555555555 55 55 55 0 0 888 55555 0 99 0 0 6666 222222222222222222222222222222222222222222222222222222 00000000 888 9999 2 5555 0 777777 0 33333333333333333333333333333333333333333333333333333 77777777777777777 8 0000 00000 44444444444444444444444444444444444444444444444444444444 8 444444 4 6 88 555 0 000 0 0 2 2222 4 00 000 2 6 0 0 0 2 0 2222 0 666 44 4 0 8 7 3 3 7 0 3 3 00 3 33 0000000000000 4 444 88 8 666666666 2222 7 777 5 11111111111 6 66 0 9999999999999999999999999999999999999 44444 11 777 666 6 9 7 66666 7 7 4 7 0 0 3 5 88 0
consensus : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTATCTGTTATGCTATAT-------A----GTC-TTTTACCAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATACAACACTCCTTCGTAAATGAAGACTGCGTCGGCGCCATNAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTT--------TCAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAANATTATATAAGCATACTGATGGAAA---GTGATTTAGTAGANGTTAC-GATTTACAAACCGTT-TTTGTTGTATG-G--ACAACG--AAAC--------AC--------A-----TAAG-ACAGGATAATATTTTATTTTAACTAACTT-TTATT---TAGAATGTTTAA-CT-TAAAATAAT--ATTTC--ACAGTTC-AGTCTCCAAGGTGAT--ANA-TAT---TTGT-----ATA-CA--T-T-TC----AAAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGAT-C--TACA----TA-GATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCGAGTCTTTTAAATTAAA-T--A-T----C----T------GGTATTT-T--T---TT-A-AAT-AT-------TAAAGCCT---TCAAGTTCAATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTT--CATAG--AAATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAN-GTTCCGATCGATTATCTCCAAGCTGACGAATANATTTTAAATACATGCATG-CA-CCATGCGTAGACTAAGCATAGAATCCATTATTCACCCTCGCTACAGCCTAGATATCACGAAAAAACCTTCGTTTGAACATTATTTTGG-ATATGCATGTACAACGGGGTCACTATAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGGCATAC---AAGA---AT-ATAATAAGATTGAAGTTTGAAGCGAAGATAACGA-AT--AATTAAG----T-AA---GGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGTTAACAAGATTGAAGTATNAATTGAAAA-A-A-----A--AAGATTACAAG-------------AACAAAG----TAAGTATGG-AAAGT-AAAC--CAGATNACAAGAATTGA-GTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTNGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTATAAA
Reference ( family-544 ) : TTACCCCCGCTAGGGGTCCGATTTTTATTACATTTTTAGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTATCTGTTATGCTATAT-------A----GTC-TTTTACCAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATACAACACTCCTTCGTAAATGAAGACTGCGTCGGCGCCATNAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTT--------TCAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCCGGAANATTNTATAAGCATACTGATGGAAA---GTGATTTAGTAGANGTTAC-NATTTACAAACCGTT-TTTGTTGTATG-G--ACAACG--AAAC--------AC--------A-----TAAG-ACAGGATAATATTNTATTTTAACTAACTT-TTATT---TAGAATGTTTAA-CT-TAAAATAAT--ATTTC--ACAGTTC-AGTCTCCAAGGTGAT--ANA-TAT---TTGT-----ATA-CA--T-T-TC----AAAG---------A------------AGG--------------TT-------------AAATGC------TGTATTTCAAAGACAGTT---CAATCTCCAAGATGAT-C--TACA----TA-GATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCGAGTCTTTTAAATTAAA-T--A-T----C----T------GGTATNT-T--T---TT-A-AA-----------TAAAGCCT---TCAAGTTCAATTACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTT--CATAG--AAATGTTCAATAATCTCAA-G-GTGAT-CTATNTAT----AT-TTTCCATGAAAAN-GTTCCGATCGATTATCTCCAAGCTGACGAATANATTTTAAATACATGCATG-CA-CCATGCGTAGACTAAGCATAGAATCCATTATTCACCCTCGCTACAGCCTAGATATCACGAAAAAACCTTCGTTTGAACATTATTTTGG-ATATGCATGTACAACGGGGTCACTATAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGGCATAC---AAGA---AT-ATAATAAGATTGAAGTTTGAAGCGAAGATAACGA-AT--AATTAAG----T-AA---GGAAAGAATAAAGATAACAAGAATGAA-----------GTATGGAAAGAAATTAAGTTAACAAGATTGAAGTATNAATTGAAAA-A-A-----A--AAGATTACAAG-------------AACAAAG----TAAGTATGG-AAAGT-AAAC--CAGATNACAAGAATTGA-GTATGAAGTAAGT----AA-GGAAA-ACAAGATTGGAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAANAAAAATTNGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GTNCTAGTATAAA
gi|1 : TTACCCCTTCTGGCGGTCCGATTTTTATTACATTTTTGGCATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCAAGACTGTGCAATCGGTAATTACCAGCGTCACATAACGCGGTAGGTATATAAAATTCATTGTTATAATTTGTTATG--ATAT-------A----GTC-TTTTACTAGGT---CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAAACAACACTCCTTCGTAAATGAAGACTGCGCCGACGCCATAAAATGGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTAAACTG-----------CAGAAATGACTTTAAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-ATACAAGCATACTGATGGAAA---GTGATTTATTAGATGTTAC-AATTTACAAACCGT-----------------ATAACA--AAAC--------AC--------A-----TAAG-ACAGGATAGTATTCTGTTTTAACTAACTT-TTATT---AAGAATGTT--------AAAATA-T--ATTTC--ACAGTTC-AGTTTCCAAGGTGAT--AAC-TAT---TTGT-----ATA-CA--T-T-TC----AAAG---------A------------AGA--------------TT-------------AAATGC------TGTATTTCAAAGATAGTT---CAATCTCCAAGATAAT-C--TACA----TA-AATGTA--C-C-TGAAATTCAATCTCCA----------------AT---------------------TTAA----CA--TATCCAAGCTGATCT---T-------------AAGAAAT----AGTTGAGTCTTCTAAATTAAA-TTAG-TGGTAG----T------GGTATTT-T--T---TT-A-AATCATAG-----TAAAGTCT---TCAAGTTCAATTACCTTTAAGAAAAAATCATATAA--AAGTATAAATTTGAAAAAA-AA-G-AAAGAAA-AAA-AAGTTTATATATTTTATATAT--AAATGTTCAATAATCTCAA-G-GTGAT-CTATATAT----AT-TTTCCATGAAAAG-GTTCCGATCCATTATCTCCAGGCTGACGAATACATTTTAGATACATG---G-CA-CCATGCGTAGACTAAGAATAGAATCCATTATTCATCCTCATTACAGCCTAGATCTCACGAAAAAA----------AAC-TTA---TGG-----GCATGTACAACGGGGTCACTATAGG----------ATTTTCTA--CTATTTAAATAACCCGGCATAC---ATGATACAT-GTAATAAGATTGAAGTTTGAAGCGAAGATAAAGATATTCAATTAAG----T-AA---GGAAAGAATAAAGATAACAAGAATGAG-----------GTATAGAACGCAATTAAGTTTACAAGATTGAAGTATTAATTGAAAA-ACAGTAACA--AAGATTACAAG-------------AACAAAG----TAAGTATGG-AAAGTAAAAC--CAGATTACAAGAATTGA-GTATGAAGTAAGT----AA-GGAAA-ACAAGATTGAAGTATAAACTCAGCATGGAAAGAATCAAAGATAAAAAGATTGGAGTAAGTATGGAAAGAATGAATAAAAATTGGTTTTAGATACCAGGAAACACAGTATGAGTATTGT--GTTCTAGTATAAA
gi|10 : AAA----T-AA---TGAAAGAATAAAGACAACAACAATGCA-----------GTATG--AAGAATTTAAGTTAAAAAGATCGAAATATTTATTGAAAA-A-A-----A------TTA---------------------------------------AATT-AAAC--CTGATAACAAAAATTGA-GTATGAAGTAAG---------GGAA-TCAAGATTGAAGTATAAAGTCAGCATGGAAAGAAGCAAAGATAAAATGATTGGAGTAAGTATGGGAAGAAAGAATAAAAACTGGTTATAGATAACAAGAAACACAGTATGAGTATTtt
gi|11 : TTACCCCCGCTAGCGGTCCGA-----A------TTTTAACATTTTTATTT---TTT-TCGATTTCTCAGAAAATTATGTAACGGTTTAATTGCTCCAGATTGTGCAAACAGTATTAACCAGCGTCACATAACGCGATAGGGATATAAAATTCC---TTATTATCTGTTATGCCATACACAGTGAA----GTCTTTTTACCAGGT---tttctgataggatagaaat
gi|12 : gaATTAAGTAGAACTGAAATAATAAAGTTTGTATCAGATGTAACCCGGAACATTATACAAGCATACTTATGGAAT---GTGATTTAGTAGAGGTTAC-GTATCACAAACCGTTATTTGTTGTATG-GGTACAGTGATAAGCAGTGAGTGACCTAATGTAA-----TAAG-GCAGGATGCTATTTTATTTTAgtgggtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt
gi|13 : aatcaaagtgtttaaagcactaaaacctcggtaaacactgAAT--------AC--------A-----CGAG-ACAAGATAATATTGTATGTTAACTAACTT-TTATT---TAGAATGTTTAA-C----------T--GTTTC--ATAGTT--AGTCTCCAAAATGAT--ACA-TAT---TTGT-----GTATTA--T-TCTC----AAAA---------ACGTTCAATCGACAGG--------------TT-------------AAACGT------TATACATCAAAGACAGCT---CAGTCTACAAGATGAT-A--TACA----TA-GATATA--C-
gi|14 : -----------GTGTAGAAAGAAACCAA-------AAATTGAAGTATAAATGGAAAT-A-A-----ACTAAGATAACAAG-------------AACAACA----TAGGTATGGTAAAG---AATTATAGATAACAAGAATGAA-GTATTAACTGA------AA-GAAAA-AAAAGATTGTAGTAC-AAGTCATCATGGGGA-AAACAAATATAACAAGATTGGGG
gi|15 : AAGCATATTGATGGATATTTATCATTAAGCTGAGGTTAT-TATTTACAAACCTTTCTTTGTTGGATG-C--GCA-CG--AGA--------------------------AAGTACA---TAATATTTTATTTTGACTAACAT-TTATT---TAGAATGTTTAA-CTGTAAAATAAC--ATTTC--ATAGCTC-AGTCTCC-AGATGAT--ATA-Tgtg
gi|16 : ctttgTTTATTT---TTTGTCGATTTCTCAGAAAATTATGTAACGGTTTGATTGCTCCAGATTATACAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATATAATTCTTTTTTATTATTTGGTATG-TA-AT-------A----GTC-TTTTACCAGGT---
gi|17 : --ATAACA--AAAT--------AC--------A-----TAAG-GCAGAATTACATTTTATGTT-------CT-TTGTT---GATAGTGTTTAA-TTGTAAAATA-----TTTT--AAAGTTA-AGTCTCCAAGTTGAT--AAACCAT---TT
gi|18 : TTACCCCT-CTAGGGGTCCGAATTTTATTACATAATTAGGATTTTT-TTTATGTTT-TCGATTTCTCAAAAAcat
gi|19 : agtttgttgcgaatttatagtttagtcccTTATCCCCGTTAGGGGTCCGATTTGTATTACATTTTTA----------TT---TTT-TCGATTTCTCAGAAAATTATGTAACGGCTTAATTGCTCCAGATTGTGCAA
gi|2 : gtTTT---TTT-TCGATTTCTTAGAAAATTTTGTAACGGTTTAATTGCTCCAGATAGTGCAAACAGTATTTACCAGCGTCACATAACGCGGTAGGGATATAAAATTCCTTGTTATTAACTGTTATACTATAT-------ATATAGTC-TTTTA--AGGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTACAACACCTTTTCGTAAATGAAGACTGCATCGGAGCCATCAAATTGTTTAGAATTGTTAGTTATGATCCTTGCAGTTTATACTGTTGTAGTTGCTCTGAAATGA-TTTGAAATATTAA--AGAAATGAAATAATAAAGTTTGTGTCAGATGTAGCCTGGAAAAT-ATATAAACATAGTGATGGAAA---GTGATTTATTAGATGTTAC-AGTTTACAAACCGT-----------------ACAACA--AAAC--------AC--------A-----TAAG-ACAGGATAATATTATGTTTTAACTAACTTATTATT---TAGAATGTT--------AAAA-GAT--ACTTC--ACAGTTC-ATTCTCCAAGGTGAT--AAC-TAT---TTGT-----ATA-CA--T-T-TC----AAAG---------A------------AGG--------------TT-------------AAATGC------TGTAGTTCAAAGATAGTT---CAATCTCCAAGATGAT-CTATATA----TA-GATGTA--C-C-TGAAATTTATTTTCAA----------------AT---------------------TTAA----CA--TGTCCAAGATGATCT---T-------------AAGAAAA----AGTCCAGTCTTTTAGATTAAATT--A-T----CATAGT------GGTATTT-T--T---TT-A-TA-----------TAAAGCCT---TCAAGTTTAATTACCTATTGGAAAAAATTGTCTAA--AAGTATACATTTG---AAA-AA-ATAAATAAATAAA-AAGTTTATATTTTT--TATAGATAAATGTTCAATCACCTCAA-G-GTGAT-CTATTTAT----AT-TTTCCATGAAAAT-GTTCCGATAAATTATCTCCAAGCTGACGAATATATTTT---TACGTACATGACA-CCATGCGTAAACTAAGCAAAGAATCCATTAGTCACTCTCACTATAGCCTAGATATCACGAACAAACCTTCGTTTGAACATTATTTTGGTATATACATATACAACAGGGTCATTATAGGTTTCCATACCATTTTCTAATCTCTTTAAATAACCCGGCATAC------A---AT-ATAATAAGATTGCAGTTTGAAGCGAAGATAACG--AT--AATCAAG----T-AA---GTAAAGAATAACGATTACAAGAATGGA-----------GTATGGAAAGAAATTAACTTAACGAGATTGAAGTATTAATTG--AC-A-A-----A--AAGATTACAAG-------------AACAAAG----TTAGCATGG--AAGT-AAAC--CAGATAACAAGACTTGC-GTATGAAGTAAGT----AA-GGAAA-ACAAGATAAGAGTAAAAAGTCAGCATGGAAAGAAGC-AAGATAAAAAGATTGGAGTAGGTATGGAAAGAATGAATAAGACTTGGTTATAGATAACAAGAAACACAGTATGAGTATTGT--GT
gi|20 : tTTATCCCCGCCAGAGGTCCGATTTTTATTACATTTTTTGCATTTTTA-TT---TTT-TCGATTTCTCAGGAgatcaaataga
gi|21 : tCTAGGGGTCCGATTTT----ACATTTTTGGCAGTTTTATT----TTT-TCGATTTCT
gi|22 : gctCCCCGCTAGGGGTCCGACTTTTATTACAtg
gi|23 : gtttattcccctaTTACCCCCGCTAGGGGTCCGATTTTTATAAC
gi|3 : agtAATATACAACACTCCTTCGTAAATGAAGACTGCGTAGGCGCCATGAAATGGTTTAAAATTGTTAGTGATAATCCTTGCAGTTT-TGCTGTT--------TCAGAAATGACTTTAACATATTAA--AGAAATGAAATAATAAAGTGTGTGTCAGATGTAGCCTGGAAAAT-GTGTAAGCAAACTTGTGGAAA---GTTTATTATTATATATTAC-AATGTACAATCCGT-----------------ACAACA--AAAC--------AC--------A-----TAAG-ACAGGATATTATTCTGTTTTAACTAACTT-TAGTT---TAGAATGTC--A-----AAAAT--T--ATTTC--TCAGTTC-AGTCTTTATGGTGAT--AAA-TAT---TTGT-----GAA-CA--T-T-TC----AAAG---------A------------AG------------------------------------------------------ACAGTT---AAATCTCCAAAATGAT-C--TAGA----TA-GATATA--C-C-TGAAGTTCAATCTCCA----------------ATTTTTCATTCCTGCACGTGTATTTAAAATACA--TGTCCAAGATGATCT---T-------------AAGAAAATTTCAGTTGTTTTTTTTTAATTAAA-T--AAT----C----TTTTTTAGGTATTT-T--TCTTTT-A-AA-----------TAA-GCGT---TCAAATTAGATAACCTATTGGAAAAAATCGTCTAA--AAGTATAAATTTG---AAA-AAAG-AAAGAAA-AAA-AAGTTTATATATTT--CAAAG--A--TGTC----AATCTCAA-G-GTGAT-CTATATAT----AT-TTTCCATGAAAAT-GTTCCGATCGATGTTCTACAAACAGATGAATACATTTTAAATACATGCATG-CAACCATGCGTAGACTAAGCATAGAATCCATAATTTACCCTCGCTACAGCCTAGATATCACAAAAAAATCTTCGTTTGAACATTATTTTGGGATATGCATGTACAACGGGGTCACTGTAGGTTTCCATACCATTTTCTA--CTCTTTAAATAACCCGACATAC---AAGA-------TAATAAGATTGAAGTTTGAAGCGAAGATA-CTA-AT--AATTAAG----T-AA---GGAAAGAATAAAGATAAAAAGAATGAA-----------GTATGGAAATAAATTAAGTTAACAAGATTGAAGTATCAATTGAAAA-A-A-----A------TTACAAG-------------GACTAAG----AAAGTATGG-AATGC-AAAC----GAT--CTAG---TGA-GTATGGAGCAAGT----AA-GGAAA-ACAAGATTGGATTATAAAGTCAGCGTTGAAAGAAGCAATGTTAAACAGATTGGCGTAAGTATGGAGAGAATGAAGAAAAATTTATTATAGATAA-AAGAAACACAGTACGAGTATTGT--GTGCTAGGATAGA
gi|4 : tcatcttcttc-TCTCCATGAAAAAAGTTTCGATCAATTATCTGCGAGTTGACGTATAGACTTTAAATACAaat
gi|4 : -ATAGTAAGAATGAAG------AC--AG-TAA-GA-ATG-AATTAAGGTCGT-AA---G------ACAAATAGAACAGTAATGAA-----------GCA-GGAAGTAAACAAAGGTAACATGAATAAAGTATGAACCTAA----------------GATTACAAGTAAGTATGGAAATAGCAAAG----TAAATATTG-AAA---AAGCA-TAGACTACAAGAATGAA-GGATGAAGTTAGT----ACTGAAAA-ACAAGATTAGAGTATAA-GTAAGCATCGAAAGAAGCAAAGATAACATGGTTGAAGCAAGTA-GAAAAGAACGAAGAACGGTTCGTAGCTGATAACAAAAAACATAGTTTGAGTATTGaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggatagtaagaatgaagacagtaagaatgaattaaggtcgtaagacaaatagaacagtaatgaagcaggaagtaaacaaaggtaacatgaataaagtatgaacctaagattacaagtaagtatggaaatagcaaagtaaatattgaaaaagcatagactacaagaatgaaggatgaagttagtactgaaaaacaagattagagtataagtaagcatcgaaagaagcaaagataacatggttgaagcaagtagaaaagaacgaagaacggttcgtagctgataacaaaaaacatagtttgagtattg
gi|5 : tctccatgaaaaaagtttcgatcaattatctgcgagttgacgtatagactttaaatacaaaattgaatattaatgctgaatcatacatctcaaagaaagttaaatctccaaaatgacatatatattcaaacactaagttaaattatttatttcaaagaaagatcattttttatattcaatgaattagatggacttgataatttaaaggaaaacttaaaggaaaggAACATTTTATAAGCACACTGATGGAAA---GTGATTTAGTATAGGTTACTAATTAATAAACCGTT-TTTGTTGTATG-G-----GTG--CAAC--------AC--------AATCTTTAAG-ACAAGGTAATATTTTATTTTAAAT-GTTT-GTATT---TTGACTGTTTAA-CT-TA----------------ACAGTCA-AATCTTCAAGGTGAT--AGA-------TTGTGAACGATA-TA--T-T-TCATGGAAAGTTTAATCTCA------------AAG--------------TT-------------AAATAA------TATATTTCAAAGACAGTT---CAATATCTAAGATAAT-CATTATAGG--TATGAGGTATGC-A-TG-GATTCAATCT------------------------------------------------------------AGAAG---T---T-------------A--AAAA----AGTCGAGT-TTTTAAATTGAA-C--A-T----T----TAAA---GATATATATAAT---TT-ATAATTATGTATCTTTAAAA--T---TGAAGTCCAGTTATCCGTAGACAAATATAACATAATGAAGTATGAAAATG---AAGTAT-G-AAAGCAA-AAATAACCTTA-ACAAT----ATGG--AAAGAATTAATAATATTAA-GAGTGA
gi|6 : ataGTCAGATGTAGCCCGGAATATTATATAAGCGAACTGATGGAAA---GTGTTTAAGTAGATAGTAT-TGTTGACAAACCGTTGTTTGTTGTATG-GGTACAACA--AAAT--------AC--------A-----TAAG-ATTCGATAAGATTTGATTTTAACTAA--T-TTATT---GAGAATGTTAAATTT-TAAACCAAT--ATTAA--ACAGTTC-TGTCTCCAAGGTGAT--AGA-TTT---TTGC-----ATA-TA--T-T-TC----GAAA---------A------------------------------T-------------AAATGT------TATATTTCAAAGACAATT---AAATTTCCTAAATGAA-T--TACATGTGTA-CATGTA--CACATAAAATTCAATTTCCAAGTTTATTGTGCGTATAT---------------------TTAA----AAACTCTCCAAGAAAATCTAAATATATAGATTTAAAAAGAAAA----AGTC------TTTATATTGAA-T----T-----------------ATATCT-T--T---TTGA-AA-----------AAAAGTCCCAGTCGAGTTCTATTATCTATTGG-AAAAATCATCT
gi|7 : CGACATATGTAAAGA---ACCAAAACAAAAATAAAATAGGAAGCACATATAAC-A-AC--AATCAAG----TTAATATAGAAAGAAAAAAGATAACAAGAATAAAATATGAAGTTTGTATGGAAGGAAATAAAAATAACAAGATTGAAGTATGAAGTAAAAATG-A-----A--AAGA--------------------AACAAAGATTACAAGCATGG-AAAGA-AAAA--TAGATTACAATA-TTGAAGTATGAATTAAGTCCGGAA-AGAAACACAAGATTGAAGTATAAA-TTAACATGGAAAAAAGAAAATATATGAAAATTGGAGTATGCATGGAAATAATG-AGAAAGATTCGTAGAAGATAAAAAGAAATACGGTTTGAATG-TGTAAGCCATAGTAGAAAcattacttatattatgtatttcaaagaa
gi|8 : ttgttataaatatgcatttTATTATATTTTA-------T-TTGTTGCACATATTGTT---------AAATAATGTATTTCTAAGAATTCCAATCTCCAAGATAATCTACA-TGTACATTGT-----ATA-TA--TCT-TT----AAAA---------A------------ATGCCCAGTTACCGACTTT-------------AAAT-C------TGTTTTTCAAAGACAGTT---CAATCTCCACGATGATAC--T------------TTTA------TGAAAAT--ATCTCCA---------------------------------------TTAA-----A-----CCATGATTATCT---gt
gi|8 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgTTT--CAAAG--ACA-GTTCAAT---CTCCACG-ATGATACT-TTTATGAAAATATCTCCATTAAA------CC-AT-GATTATCTCCTAGCTTACGTATAAATTTTAAATATAcctagcttacgtataaattttaaatataaaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca
gi|9 : attttatttttgtttgtaataaattgttttatttcatattttttacatatacatgcatgtattatattttatttgttgcacatattgttaaataatgtatttctaagaattccaatctccaagataatctacatgtacattgtatatatctttaaaaaatgcccagttaccgactttaaatctgtt--AGAAATGTAATAATAAAGTTTGAGTCATATGTCGCCCAAAACATTTTATAAGTATACTGATGGTAA---GTGATTTAGTACAGGTTAC-TATGTACAAACCTTTGTTTGTTGTATGTGT-GCAACA--AAAT--------AC--------A-----TAAG-ACAGGATACTATTTTATTTTA-------------T---TAGAATGTTTAA-CTGTAAAATAAT--ATTTC--ACAATTG-AGTCTCCAAGATGAT--AGA-TAT---TTTT-----ATA-CATGT-T-TC----AAAG---------A------------AAG--------------TTTAATCTCCCAGTAAAATGTTATACATGTATTTCGAAGACAGTTGTACAATCTCCCAGATGCT-C--TACA----TA-GGTATA--aaattgaatatccaagatgaattatagtttactcctcagaaagttaatctcccagatgaca