lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 444444444444444444444444444444444444444444444444444 111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 11 1 1 1 33 1 1 22 333333 11 1 55 1 999999999999999999999999999999999999999999999999999 1 1111 33 444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 22 1 22222222222222 22 1 222 1 1 1 1 1 1111 22222 11 2222222 777777777777777777777777 111 2222 22 1 1 1 11 1111 11 1 111 2222 22222 22 1 1 222222 2222 1 111111111 1 33333
lowQualScore : 6 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 22 6 6 6 6 6 6 22 5 6 5 6 7 6 22 6 5 5 11 6 444444 22 5 55 7 111111111111111111111111111111111111111111111111111 5 6 7777 6 22 888888888888888888888888888888888888888888888888888888888888888888888888888888888 6 6 5 6 6 6 6 11 7 22222222222222 4 3 2 00 6 7 333 5 66 3 4 0 0 0 3 5 1 3 4 2 7777 99999 11 1111111 777777777777777777777777 444 8 1111 2 1 9 77 5 7 8 6 222 55 3333 6 3 6 3 22 6 5 000 44 6 6 9999 8 1 3 00000 1 33 3 5 999999 4 3333 7 66 6 4 4 4 555555555 999 8 9 6 5 4 22222
lowQualScore : . ........................................................................................................ .. . . . . . . .. . . . . . . .. . . . .. . ...... .. . .. . ................................................... . . .... . .. ................................................................................. . . . . . . . .. . .............. . . . .. . . ... . .. . . . . . . . . . . . .... ..... .. ....... ........................ ... . .... . . . .. . . . . ... .. .... . . . . .. . . ... .. . . .... . . . ..... . .. . . ...... . .... . .. . . . . ......... ... . . . . . .....
lowQualScore : 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 0 0 0 0 0 0 00 0 0 0 0 0 0 00 0 0 0 00 0 000000 00 0 00 0 000000000000000000000000000000000000000000000000000 0 0 0000 0 00 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 0 0 0 00 0 00000000000000 0 0 5 00 0 0 333 0 22 2 5 2 5 2 5 0 0 0 6 8 0000 00000 00 2222222 000000000000000000000000 000 0 2222 2 2 5 88 0 0 0 4 666 00 6666 0 3 0 7 00 0 0 222 22 7 0 8888 0 4 0 44444 4 22 2 0 222222 0 0000 0 22 0 4 7 4 111111111 444 8 0 7 0 4 22222
consensus : TTTCAACTTATCTCTAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTCATTGAAATATTAAAAAGGATTATTCAGAACAAATTAGTCAAGCATGTTAAAAATAATCAGATCATCTCGTGCCATCAGCATGGCTTTCAGAAAAAGAGCTTATTTGTTACACATTTACTTGAATGCCTAAATGACTGGACTGAATCCTTTCATAGAAAGCAAACTAATGACATTATATACTTAGATTTTGCTAAGACCTTCGACACTGTTCCTCATTTAAGAGACTTATACTGAAAT------------------AAGGAA-----CTATGTTC-----AGT------TGGCTGATAAACAACCAAGAGTGGTTTAGCCAGGTGGTTCTTCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AACAGTCAGGTGCACTCAACAGTGAAAATGTTCACAGATGACACTACATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAACTTCTCCAGAAACACTTAAATTCATAAGCTGCTTGGGCAAATC------TACCGCATTTTAACGNGAANAANTGTAANGTTGCCAAAATAAGACAATCCCTTGATTTTA---AATATTCACTTAATGGTATCATCTTGGAAGAAGAGGAGAGTCAGAAGGATNTGGGTGTGTTTATATCAAACACTTTGAAGCCAGATATTCATATTT--CAAAGGTTGTA-AAAAAA--GGCTAATACAAGAATAGG--ACT--TATCAA------------------------ACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCGTGATACGACCGGTATTAGAATACGGATCACCTGTGTGGTCACCATATTTAAG-AAAAGATATTGATCAATTAGATAAAGTTCAAAG--GCGGTGCCTCAGACTTTCTAACGACACGGTTCATTTACCTAGCCTACAGAGCAGAAGATTTTGTCAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACAA-TTTTTCACATTTTG-TGATACTCCTACTCGTGGTCATCACATGAAACTTGAAAAACATTACGCNCGTACTGACATTCGTAAACACT--TTTTTGCTAACCGTGTTGTTGATAAG-TGGAATAANCTT-CCAT--CAAGCATGATCTCGGCACCGTCGGTGAACGCGTTCAAGAAGAGTTTGACATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAG----TAAAGT
Reference ( gi|1 ) : TTTCAACTTATCTCTAAAATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTAGAATATTAGAAAAGATTGTTTAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCTTGCCATCAGCACGGCTTTAAGAAAAAGAGCTCAATTATTACACTGTTACTTGAATGTCTAAATGAATGGACTGAATCCTTTGATAACAAGCAAGCTACGGATTTTATATACTTAGATTTTGCTAAGGTCTTCGACACTGTTCCTGAT--AAGAGACTAATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTGGATAGAGTCCTTTCTGGCTTATAGACGGCAAAGAGTAGTTTTTCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTCCCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTAAATTATATTGCATTGCCAGTGATGTAGAGAACTGCAAGCTTCTCCAGGAAGGCTTAAATTCATTAGCTGCTTGGGCAAATCATCGGTTACTTCAATTTAACGAGAAAAAGTGTATAGTTATCAAATTAAGACAATCCCTTGATTTTA---AAGATTCACTTAATGGTATTATCTTGGATGAAGAGGAGAGTCAGAAGGATTTTGGTGTATTTATATCAAATACTTTGAAGCCAGACATTCGTATGT--CAAAGGTTAT--GAAAAA--GGCTAATACAAGAATAGG--ACG--TATCAA------------------------ACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATATTACCATGATACGACCGTTATTAGAATACGGATCCACTGTGGGGTCACCATATTTTAG-AAAAGATATTGAACAATTAGATAAAGGTCAATG--GCGATGCCTCGGACTTTCTAATGACACGGTTCATTTATTTAGCTTACACAGCAGAAGATTTTATTAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTAATAGTTAAC-A-TTTTTTACATGTTT-TGATACTGTTACTCGTGGTCATCAAATGAAACTTGAAAAATATAATGCACGTACTGACATTCGTAAACATT--TTTTTGCTTACCATGTTGTTAATAAG-TGGAATAAGCTT-CCAT--CAAGCATGATCTCAACACCGTCGGTGAACACGTTCAAGAAGAATTTGAGATCCCTACCTGATGGCGAAGCGG-ATAATCCAGTAAAG----TAAAGT
gi|2 : TTTCAACTTATCTCTAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTCATTGAAATATTAAAAAGGATTATTCAGAACAAATTAGTCAAGCATGTTAAAAATAATCAGATCATCTCGTGCCATCAGCATGGCTTTCAGAAAAAGAGCTTATTTGTTACACATTTACTTGAATGCCTAAATGACTGGACTGAATCCTTTCATAGAAAGCAAACTAATGACATTATATACTTAGATTTTGCTAAGACCTTCGACACTGTTCCTCATTTAAGAGACTTATACTGAAAT------------------AAGGAA-----CTATGTTC-----AGT------TGGCTGATAAACAACCAAGAGTGGTTTAGCCAGGTGGTTCTTCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AACAGTCAGGTGCACTCAACAGTGAAAATGTTCACAGATGACACTACATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAACTTCTCCAGAAACACTTAAATTCATAAGCTGCTTGGGCAAATC-------ACTGC--TTTAACGTGAAAAAGTATAAAGTTGCCAAAATAAGACAATCCCTTGATTTTAAATAATATTCACTGAATGGTATCAGCTTGGAAGAAGAGGACAGTCAGAAGGATTTGGGTGTATTCATATCAAACACTTTGAAGACAGATATTCATATTT--CAAAGGTTGTAAAAAAAA--GGTTAATACAAGAATAGGTAAAGATTATCAA------------------------ACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACTGCCAGTATTAGAATACAGATCACCTGTGTGGTCACTATATTTAAGAAAAAGGTATTGA---------------TCAAAG--GCGGTGCCTCAGACTATCTAACGACACATTTCATTTACCTAGTCTACAGAGCAGAAGATTTTGTCAAGAC--GTGTGAAACTTACAAGTTCATAAATAATTTAT-ACATAACTGATAGCTCACAA-TTTTTCACATTTTG-TGATACTCCTACTCATGGTCATCACATGAAACTTGTAAAA-------CACGTACTGACATTCGTAAACACT--TTTTTGTTAACGGTGTTGTTGACAAG-TGGAAAAAGCTT-CCGT--CAAGCACGATCTCAGCACCGTCGGTGAACGGGCTCAAGAAGACTGTGAGATTCGCACCTCATGGTGAATGAG-ATACTCCACTAAAG----TAAAGT
gi|7 : TACCTCATTTTAACGAGAACAATTGTAACGTTACCAAAATAAGACAATCCCTTGATTTTG---AATATTCACTTAATGGTATCATCTTGTATGAAGAGGAGAGTCAGAAGGAATTGGGTGTATTTATATCAAATACTTTAAAGCCAGACATTCATATTT--CAAAGGTTGTA-AAAAAA--GGCTAATACAAGAATAGG--ACT--TATCAA------------------------ACGATATTGTACTGATTATAG---ACCTC-AGAAGATTAAaaaggtaaagtat
gi|6 : TAAGACAGTCCCTTGATTTTA---AATATTCACTTAATGATATCTTCATGGAAGAAGAGGAGAGTCAGAAGGATATGGGTGAGTTTATATCTAACACATTGAAACCAGATATTCATATTT--CAATGGTTGT--CAAAAG--GGCTAATACAAGAATAAG--ACT--TATCAAGGACTTATATAGAAACTTACAAAAACGATGTGCTATTGACTATAG---ACTTG-AGAATACTAAAGAATACTTTATATGTTGCCATGATACGATCAATATTAAAAAACGCATCACCTGTATGGTCACCAT
gi|3 : acctgtttgaacgagaaaattggaTTCGC--AATGG-AC-ATCTTGAAAGAAGAAGAACGTATAAAGGGTGTGGGTGGGTTTGTATCGAACACTTAGAAGCCCGAAATTT-TATTTTTCAGACGTTGA--AAAAAA--GGCTAAAAACAGAATAGG--ATT--TATCAA------------------------ACGATGTTTTACTGATTATAT---ACCTG-AGAAGATTAAG----GCTGTATATATTACCTTGATACGACCGTTATAAAAATACGGATCTCCTGTGTGGTTACCATATTTAAG-AAAAGATATTGATTAATTAGATGAA-GTCTATACCGCGGTGCCTCGGATTATCTAACAACATGCTTCGTTTACCTAATCCACAGAGCACACGATTTTA-CAAGACATGTGTGAAACTTACAAGTTCATAAATGATTTTTAACAGTACTGGTAGTTCACAA-TAACTCACATTTAG-TGAAACTCATACTC---GTCATCACATTAAACTTGACAAACATTACGCTTGTACTATCATTCGAAAACACTTATTTTTGCTAACCGTGTTGTTGATAAG-TTGAATAAGCTT-CCAT--CAGAAATGATCTCAGCA
gi|5 : aataaaaaaatccacatctgtaatattGGTGTGTTTATATAAAACACTTTGAAGCCAGATATTCATATTT--TAAAGGTTGT--AAAAAAAAGGCTATTACAGGAATAAG--ACT--TATCTA------------------------ACGATGTTTTACTGATTACAAGATACATGTATAAGATAACG----ACCTTATATGTTACCGAGATGCGATTGGTATTAGAATACGGAACACCTGTGTGGTCGCCATATTTAAC-AAAGTATATTGATCAATTAGATAAAGTTCAAAG--ACGGTGCCTCAGACTTTCTAACGACATGGTTCATTTACCTAGCCTACAGAGAAGAAGATTTTGTCAAGAAATGTGTGTAACTTACAAGTTTATAAATAATCTAT-ACAGAACTGATAGTT
gi|4 : tgCATCATATTTAAT-AAAATATATTGATCATGTAGATAAAGTTCAAAG--GCGGTGCCTCAAACTTTCTAACGAGACAGTTCATTTGCCTAGCCTACAGAACATAAGATTTTGGCAAGACGTGTTTGAAACTT--AAGTCCATCAATAATCTAT-ACAAAACTGATAGTTCACAA-TATCTCACTTTTTG-TGATACTCCAAGTCGTGGTCATCACACGAAACTTGAAAAACATTTCGCTCGTACTGACATTCGTAAACA-C--TTGTTGCTAACTGTGTTGTTGATAAG-CGGATTAAACTT-CCAT--CTAGCCTGATCC-----CTGTTGGTGAACACGCTCAA---------GAGATCCCTACCTGATGGCGAAGGGC-ATAATCAAGTAGCA----TAAAGTc
gi|10 : TATTTAAG-AAAAGACATTGAACAATAAGATAAAGTTCAAAG--ACGGTGCCTCAGACTTTCTAACGACAATGTTCATTTACCTAGCCTACAGAACAGAAGATTTTGTCAAG--ATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCAC-ATTTTTTTACATTTTG-TGATACTCCTACag
gi|8 : gG--GTGGTGTCTCAGTCTTTCTAACGATAAGGTTCATTTACCTAGCCAACAGAGCAGAAGATTTTGTTAAGAAAAGTGTGAAACTTACAAGATCATAAATAATTTAT-ACAGAAATGATA-------A-TTTTTCACATTTTTGTGAAACTCCTACTCGTGGTCAT
gi|9 : gtatattgagcatggaactgcaggttcccatagttgtaaCTC-TGGACATAACATGAAACCTGAAAAATATTATGCACCTACTGACATTTGTAAACACT--TTTTTGCTAACCGTATGGTTGACAAAATGGAATAAACATACCAC--CATGCATGATCCCAGCACCGTCGTTGAACACGTTCATGAAGAGTTTGAGATCCCTACCTGATGGC------G-ATAATCCAGTAaaccagagac
gi|12 : ttgtattatgtTGTTGATAAG-TGGAATAAGCTT------------------------CCATCG-------CATTCAAGAAGAGTTTGTCATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAGAAATTAAAGTct
gi|11 : aTGTTGATAAG-TGTAATAACCTT-TCAT--CAgcctgtaaaatacttgtaaac
gi|15 : TGTTGATAAG-TGGAATAACCTT-CCATCGCAAGAA-GACTTTGACATCcatttaagaagagtttgacatccctacctgatggtgaaggggataatccagtaaagaaattaaaatgcctgtaaaatacttgtaaactaaacat
gi|13 : TGTTGATAAG-TGGAATAACCTT-CCAT--C--GCAAGAcctacctgatgtcgaaggagataatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaa
gi|14 : TGTTGATAAG-TGGAATAACCTT-CCATCGCAAGAA-GAGTTCGACATCCTCagagtttgacatccccacctgatggcgaaggggaaaaatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaacat
gi|11 : CACATTTAAGAAGAGTTTGACATCCCTACCTGATGGTGAAGGGG-ATAATCCAGTAAAG-----AAAacatgatggcgaaggggataatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaacat
gi|16 : tgttgataagtgtaataacctttcatCGCATTCATGCAGAGTTTGACATCCCTGCCTGATGGTGAAGGGG-ATAATCCAGTAAAG-----AAAttaaaatgcctgtaaaatacttgtaaactaaacat
gi|15 : tccatCAAGAAGACTTTGACATCCCTACCTGATGTCGAAGGAG-ATAATCCAGTAAAG-----AAAGTttaaattgcctgtaaaataaacat
gi|13 : tgttgataagtggaataaccttccatcgCAAGAAGAGTTTGACATCCCCACCTGATGGCGAAGGGGAAAAATCCAGTAAAG-----AAAGTaaagtgcctgtaaaatatttgtaaa
gi|14 : tgttgataagtggaataaccttccatcgCAAGAAGAGTTCGACATCCTCACATGATGGCGAAGGGG-ATAATCCAGTAAAG-----AAAGTaaagtgcctgtaaaatatttgtaaacat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TAACAGAGAATAGATGCAAATAGATTTTATAAACCTG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 666666666666666666666666666666666666666666666666666 000000000000000000000000000000000000000000000000000000000000000000000000000000000 4444444 11 111 111 11111 666666666666666666666666 111 1111 111 11 22222
lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2 2 4 77 2 2 3 66 4 2 88 4 666666666666666666666666666666666666666666666666666 2 2 66 444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 2 4 5555555 77 00 1 1 77 0 88 6 8 0 444 0 0 1 1 0 6 444 66666 1 444444444444444444444444 111 6 7777 4 3 1 6 7 5 1 1 00 5 6 9 4444 3 111 4 2 4 11 6 777 5 2 4 77777
lowQualScore : ........................................................................................................ . . . .. . . . .. . . .. . ................................................... . . .. ................................................................................. . . . ....... .. .. . . .. . .. . . . ... . . . . . . ... ..... . ........................ ... . .... . . . . . . . . .. . . . .... . ... . . . .. . ... . . . .....
lowQualScore : 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 5 0 00 5 5 0 00 0 5 55 0 000000000000000000000000000000000000000000000000000 5 5 55 000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 5 0 7777777 33 88 0 0 88 2 00 5 0 8 000 8 8 4 0 3 7 222 77777 0 222222222222222222222222 777 7 0000 6 2 0 7 8 7 7 4 99 7 7 3 2222 8 888 0 4 0 00 4 999 0 7 0 77777
consensus : TTTCAACTTATCTCTAAGATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTGGAATATTAGAAAGGATTGTTCAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCNTGCCATCAGCACGGCTTTNAGAAAAAGAGCTCANTTGTTACACNNTTACTTGAATGCCTAAATGANTGGACTGAATCCTTTNATAGNAAGCAAGCTANNGACNTTATATACTTAGATTTTGCTAAGGCCTTCGACACTGTTCCTNATTTAAGAGACTNATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTNGATAGAGTCCTTTCTGGCTNATAGACGGCNAAGAGTGGTTTNNCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTNNCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTANATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAGCTTCTCCAGGAACGCTTAAATTCATNAGCTGCTTGGGCAAATC------TACTTCATTTTAACGAGAAAAAGTGTAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTAAATA---TTCACTTAATGGTATCATCTTGGAAGAAGAGGAGAGTCAGAAGGATTTGGGTGTGTTTATATCAAACACTTTGAAGCCAGATATTC-ATATTTCAAAGGTTGTAAAAAAA-GGCTAATACAAGAATAGG-----ACTTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACGACCGNTATTAGAATACGGATCACCTGTGTGGTCACCATATTTAAG-AAAAGATATTGATCAATTAGATAAAGTTCA-AAGGCGGTGCCTCGGACTTTCTAACGACACGGTTCATTTACCTAGCCTACAGAGCAGAAGATTTTGTCAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACAATTTTTCACA-TTTTGTGATACTCCTACTCGTGGTCATCACATGAAACTTGAAAAACATTACGCNCGTACTGACATTCGTAAACACT--TTTTTGCTAACCGTGTTGTTGAT-AAGTGGAATAANC-TTCCAT--CAAGCATGATCTCGGCACCGTCGGTGAACGCGTTCAAGAAGAGTTTGACATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAG----TAAAGT
Reference ( family-540 ) : TTTCAACTTATCTCTAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTCATTGAAATATTAAAAAGGATTATTCAGAACAAATTAGTCAAGCATGTTAAAAATAATCAGATCATCTCGTGCCATCAGCATGGCTTTCAGAAAAAGAGCTTATTTGTTACACATTTACTTGAATGCCTAAATGACTGGACTGAATCCTTTCATAGAAAGCAAACTAATGACATTATATACTTAGATTTTGCTAAGACCTTCGACACTGTTCCTCATTTAAGAGACTTATACTGAAAT------------------AAGGAA-----CTATGTTC-----AGT------TGGCTGATAAACAACCAAGAGTGGTTTAGCCAGGTGGTTCTTCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AACAGTCAGGTGCACTCAACAGTGAAAATGTTCACAGATGACACTACATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAACTTCTCCAGAAACACTTAAATTCATAAGCTGCTTGGGCAAATC------TACCGCATTTTAACGNGAANAANTGTAANGTTGCCAAAATAAGACAATCC-CTTGATTTTAAATA---TTCACTTAATGGTATCATCTTGGAAGAAGAGGAGAGTCAGAAGGATNTGGGTGTGTTTATATCAAACACTTTGAAGCCAGATATTC-ATATTTCAAAGGTTGTAAAAAAA-GGCTAATACAAGAATAGG-----ACTTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCGTGATACGACCGGTATTAGAATACGGATCACCTGTGTGGTCACCATATTTAAG-AAAAGATATTGATCAATTAGATAAAGTTCA-AAGGCGGTGCCTCAGACTTTCTAACGACACGGTTCATTTACCTAGCCTACAGAGCAGAAGATTTTGTCAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACAATTTTTCACA-TTTTGTGATACTCCTACTCGTGGTCATCACATGAAACTTGAAAAACATTACGCNCGTACTGACATTCGTAAACACT--TTTTTGCTAACCGTGTTGTTGAT-AAGTGGAATAANC-TTCCAT--CAAGCATGATCTCGGCACCGTCGGTGAACGCGTTCAAGAAGAGTTTGACATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAG----TAAAGT
gi|1 : TTTCAACTTATCTCTAAAATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTAGAATATTAGAAAAGATTGTTTAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCTTGCCATCAGCACGGCTTTAAGAAAAAGAGCTCAATTATTACACTGTTACTTGAATGTCTAAATGAATGGACTGAATCCTTTGATAACAAGCAAGCTACGGATTTTATATACTTAGATTTTGCTAAGGTCTTCGACACTGTTCCTGAT--AAGAGACTAATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTGGATAGAGTCCTTTCTGGCTTATAGACGGCAAAGAGTAGTTTTTCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTCCCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTAAATTATATTGCATTGCCAGTGATGTAGAGAACTGCAAGCTTCTCCAGGAAGGCTTAAATTCATTAGCTGCTTGGGCAAATCATCGGTTACTTCAATTTAACGAGAAAAAGTGTATAGTTATCAAATTAAGACAATCC-CTTGATTTTAAAGA---TTCACTTAATGGTATTATCTTGGATGAAGAGGAGAGTCAGAAGGATTTTGGTGTATTTATATCAAATACTTTGAAGCCAGACATTC-GTATGTCAAAGGTTATGAAAA-A-GGCTAATACAAGAATAGG-----ACGTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATATTACCATGATACGACCGTTATTAGAATACGGATCCACTGTGGGGTCACCATATTTTAG-AAAAGATATTGAACAATTAGATAAAGGTCA-ATGGCGATGCCTCGGACTTTCTAATGACACGGTTCATTTATTTAGCTTACACAGCAGAAGATTTTATTAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTAATAGTTAAC-ATTTTTTACA-TGTTTTGATACTGTTACTCGTGGTCATCAAATGAAACTTGAAAAATATAATGCACGTACTGACATTCGTAAACATT--TTTTTGCTTACCATGTTGTTAAT-AAGTGGAATAAGC-TTCCAT--CAAGCATGATCTCAACACCGTCGGTGAACACGTTCAAGAAGAATTTGAGATCCCTACCTGATGGCGAAGCGG-ATAATCCAGTAAAG----TAAAGT
gi|10 : TATTTAAG-AAAAGACATTGAACAATAAGATAAAGTTCA-AAGACGGTGCCTCAGACTTTCTAACGACAATGTTCATTTACCTAGCCTACAGAACAGAAGATTTTGTCAAG--ATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACATTTTTTTACA-TTTTGTGATACTCCTAC
gi|11 : gTGTTGAT-AAGTGTAATAACC-TTTCAT--CA
gi|11 : CACATTTAAGAAGAGTTTGACATCCCTACCTGATGGTGAAGGGG-ATAATCCAGTAAAG-----AAAcatttaagaagagtttgacatccctacctgatggtgaaggggataatccagtaaagaaattaaaatgcctgtaaaatacttgtaaactaaacat
gi|12 : tgttgataagtgtaataacctttcatTGTTGAT-AAGTGGAAT--------------AAGCTT----------CCATCG-------CATTCAAGAAGAGTTTGTCATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAGAAATTAAAGTttaaaatgcctgtaaaatacttgtaaactaaacat
gi|13 : aTGTTGAT-AAGTGGAATAACC-TTCCAT--C--GCAAGAgcctgtaaaatacttgtaaac
gi|13 : CAAGAAGAGTTTGACATCCCCACCTGATGGCGAAGGGGAAAAATCCAGTAAAG-----AAAGTagagtttgacatccccacctgatggcgaaggggaaaaatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaacat
gi|14 : tgttgataagtggaataaccttccatcgTGTTGAT-AAGTGGAATAACC-TTCCATCGCAAGAA-GAGTTCGACATCCTCaaagtgcctgtaaaatatttgtaaacat
gi|14 : CAAGAAGAGTTCGACATCCTCACATGATGGCGAAGGGG-ATAATCCAGTAAAG-----AAAGTacatgatggcgaaggggataatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaacat
gi|15 : tgttgataagtggaataaccttccatcgTGTTGAT-AAGTGGAATAACC-TTCCATCGCAAGAA-GACTTTGACATCaaagtgcctgtaaaatatttgtaaacat
gi|15 : CAAGAAGACTTTGACATCCCTACCTGATGTCGAAGGAG-ATAATCCAGTAAAG-----AAAGTcctacctgatgtcgaaggagataatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaa
gi|16 : tgttgataagtggaataaccttccatcgCGCATTCATGCAGAGTTTGACATCCCTGCCTGATGGTGAAGGGG-ATAATCCAGTAAAG-----AAAaaagtgcctgtaaaatatttgtaaa
gi|2 : tccatTTTCAACTTATCTCTAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTCATTGAAATATTAAAAAGGATTATTCAGAACAAATTAGTCAAGCATGTTAAAAATAATCAGATCATCTCGTGCCATCAGCATGGCTTTCAGAAAAAGAGCTTATTTGTTACACATTTACTTGAATGCCTAAATGACTGGACTGAATCCTTTCATAGAAAGCAAACTAATGACATTATATACTTAGATTTTGCTAAGACCTTCGACACTGTTCCTCATTTAAGAGACTTATACTGAAAT------------------AAGGAA-----CTATGTTC-----AGT------TGGCTGATAAACAACCAAGAGTGGTTTAGCCAGGTGGTTCTTCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AACAGTCAGGTGCACTCAACAGTGAAAATGTTCACAGATGACACTACATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAACTTCTCCAGAAACACTTAAATTCATAAGCTGCTTGGGCAAATC-------ACTGC--TTTAACGTGAAAAAGTATAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTAAATAATATTCACTGAATGGTATCAGCTTGGAAGAAGAGGACAGTCAGAAGGATTTGGGTGTATTCATATCAAACACTTTGAAGACAGATATTC-ATATTTCAAAGGTTGTAAAAAAAAGGTTAATACAAGAATAGGTAAAGA-TTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACTGCCAGTATTAGAATACAGATCACCTGTGTGGTCACTATATTTAAGAAAAAGGTATTGA---------------TCA-AAGGCGGTGCCTCAGACTATCTAACGACACATTTCATTTACCTAGTCTACAGAGCAGAAGATTTTGTCAAGAC--GTGTGAAACTTACAAGTTCATAAATAATTTAT-ACATAACTGATAGCTCACAATTTTTCACA-TTTTGTGATACTCCTACTCATGGTCATCACATGAAACTTGTAAAACA-------CGTACTGACATTCGTAAACACT--TTTTTGTTAACGGTGTTGTTGAC-AAGTGGAAAAAGC-TTCCGT--CAAGCACGATCTCAGCACCGTCGGTGAACGGGCTCAAGAAGACTGTGAGATTCGCACCTCATGGTGAATGAG-ATACTCCACTAAAG----TAAAGTttaaattgcctgtaaaataaacat
gi|3 : AATAAAAAAATCCAC---ATCTGTAATA---TTTTCGCAATGG-A-CATCTTGAAAGAAGAAGAACGTATAAAGGGTGTGGGTGGGTTTGTATCGAACACTTAGAAGCCCGAAATTTTATTTTTCAGACGTTG-AAAAAAA-GGCTAAAAACAGAATAGG-----ATTTATC------------------------AAACGATGTTTTACTGATTATAT---ACCTG-AGAAGATTAAG----GCTGTATATATTACCTTGATACGACCGTTATAAAAATACGGATCTCCTGTGTGGTTACCATATTTAAG-AAAAGATATTGATTAATTAGATGAAGTCTATACCGCGGTGCCTCGGATTATCTAACAACATGCTTCGTTTACCTAATCCACAGAGCACACGATTTTA-CAAGACATGTGTGAAACTTACAAGTTCATAAATGATTTTTAACAGTACTGGTAGTTCACAATAACTCACA-TTTAGTGAAACTCATACTC---GTCATCACATTAAACTTGACAAACATTACGCTTGTACTATCATTCGAAAACACTTATTTTTGCTAACCGTGTTGTTGAT-AAGTTGAATAAGC-TTCCAT--CAGAAATGATCTCAGCAaaaggtaaagtat
gi|4 : CATCATATTTAAT-AAAATATATTGATCATGTAGATAAAGTTCA-AAGGCGGTGCCTCAAACTTTCTAACGAGACAGTTCATTTGCCTAGCCTACAGAACATAAGATTTTGGCAAGACGTGTTTGAAACTTA--AGTCCATCAATAATCTAT-ACAAAACTGATAGTTCACAATATCTCACT-TTTTGTGATACTCCAAGTCGTGGTCATCACACGAAACTTGAAAAACATTTCGCTCGTACTGACATTCGTAAACAC---TTGTTGCTAACTGTGTTGTTGAT-AAGCGGATTAAAC-TTCCAT--CTAGCCTGATCC-----CTGTTGGTGAACACGCTCAAGAG---------ATCCCTACCTGATGGCGAAGGGC-ATAATCAAGTAGCA----TAAAGT
gi|5 : TGGGTGTGTTTATATAAAACACTTTGAAGCCAGATATTC-ATATTTTAAAGGTTGTAAAAAAAAGGCTATTACAGGAATAAG-----ACTTATC------------------------TAACGATGTTTTACTGATTACAAGATACATGTATAAGATAACG----ACCTTATATGTTACCGAGATGCGATTGGTATTAGAATACGGAACACCTGTGTGGTCGCCATATTTAAC-AAAGTATATTGATCAATTAGATAAAGTTCA-AAGACGGTGCCTCAGACTTTCTAACGACATGGTTCATTTACCTAGCCTACAGAGAAGAAGATTTTGTCAAGAAATGTGTGTAACTTACAAGTTTATAAATAATCTAT-ACAGAACTGATAGTTCag
gi|6 : TTTGAACGAGAAAA---------TTG----GATAAGACAGTCC-CTTGATTTTAAATA---TTCACTTAATGATATCTTCATGGAAGAAGAGGAGAGTCAGAAGGATATGGGTGAGTTTATATCTAACACATTGAAACCAGATATTC-ATATTTCAATGGTTGTCAAAAG--GGCTAATACAAGAATAAG-----ACTTATCAAGGACTTATATAGAAACTTACAAAAACGATGTGCTATTGACTATAG---ACTTG-AGAATACTAAAGAATACTTTATATGTTGCCATGATACGATCAATATTAAAAAACGCATCACCTGTATGGTCACCAT
gi|7 : acctg------TACCTCATTTTAACGAGAACAATTGTAACGTTACCAAAATAAGACAATCC-CTTGATTTTGAATA---TTCACTTAATGGTATCATCTTGTATGAAGAGGAGAGTCAGAAGGAATTGGGTGTATTTATATCAAATACTTTAAAGCCAGACATTC-ATATTTCAAAGGTTGTAAAAAAA-GGCTAATACAAGAATAGG-----ACTTATC------------------------AAACGATATTGTACTGATTATAG---ACCTC-AGAAGATTAA
gi|8 : AGTTGT-AAGGTGGTGTCTCAGTCTTTCTAACGATAAGGTTCATTTACCTAGCCAACAGAGCAGAAGATTTTGTTAAGAAAAGTGTGAAACTTACAAGATCATAAATAATTTAT-ACAGAAATGAT-------AATTTTTCACATTTTTGTGAAACTCCTACTCGTGGTCATAAC
gi|9 : gtatattgagcatggaactgcaggttcccatCTC-TGGACATAACATGAAACCTGAAAAATATTATGCACCTACTGACATTTGTAAACACT--TTTTTGCTAACCGTATGGTTGACAAAATGGAATAAACATACCAC--CATGCATGATCCCAGCACCGTCGTTGAACACGTTCATGAAGAGTTTGAGATCCCTACCTGATGGC------G-ATAATCCAGTAcagagac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TAACAGAGAATAGATGCAAATAGATTTTATAAACCTG
Alignments
lowQualScore : 2 11 666666666666666666 22222 222222 222222 111 4444444 11 111 1111 666666666666666666666666 111 1111 111 11 22222
lowQualScore : 0 1 1 1 22 1 1 1 22 1 1 88 1 444444444444444444 77777 777777 999999 1 1 22 777 1 2 1 5555555 00 55 0 66 6 8 0 444 0 0 1 1 0 6 99 6 4444 444444444444444444444444 111 6 7777 1 1 6 7 5 1 1 1 00 5 6 9 4444 3 111 4 2 4 11 6 777 5 2 4 77777
lowQualScore : . . . . .. . . . .. . . .. . .................. ..... ...... ...... . . .. ... . . . ....... .. .. . .. . . . ... . . . . . . .. . .... ........................ ... . .... . . . . . . . . .. . . . .... . ... . . . .. . ... . . . .....
lowQualScore : 0 0 0 0 00 0 0 0 00 0 0 55 0 555555555555555555 55555 555555 000000 0 0 00 555 0 5 0 7777777 88 88 2 55 5 0 8 000 8 8 4 0 3 7 88 7 2222 222222222222222222222222 777 7 0000 0 0 7 8 7 4 7 4 99 7 7 3 2222 8 888 0 4 0 00 4 999 0 7 0 77777
consensus : TTTCAACTTATCTCTAAGATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTGGAATATTAGAAAGGATTGTTCAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCNTGCCATCAGCACGGCTTTNAGAAAAAGAGCTCANTTGTTACACNNTTACTTGAATGCCTAAATGANTGGACTGAATCCTTTNATAGNAAGCAAGCTANNGACNTTATATACTTAGATTTTGCTAAGGCCTTCGACACTGTTCCTNATTTAAGAGACTNATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTNGATAGAGTCCTTTCTGGCTNATAGACGGCNAAGAGTGGTTTNNCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTNNCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTANATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAGCTTCTCCAGGAACGCTTAAATTCATNAGCTGCTTGGGCAAATC------TACTTCATTTTAACGAGAAAAAGTGTAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTA---AATATTCACTTAATGGTATCATCTTGGAAGAAGAGGAGAGTCAGAAGGATTTGGGTGTGTTTATATCAAACACTTTGAAGCCAGATATTC-ATATTTCAAAGGTTGT-AAAAAAA-GGCTAATACAAGAATAGG----ACTTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACGACCGNTATTAGAATACGGATCACCTGTGTGGTCACCATATTTAAG-AAAAGATATTGATCAATTAGATAAAGTTCA-AAGGCGGTGCCTCGGACTTTCTAACGACACGGTTCATTTACCTAGCCTACAGAGCAGAAGATTTTGTCAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACAATTTTTCACA-TTTTGTGATACTCCTACTCGTGGTCATCACATGAAACTTGAAAAACATTACGCNCGTACTGACATTCGTAAACACT--TTTTTGCTAACCGTGTTGTTGAT-AAGTGGAATAANC-TTCCAT--CAAGCATGATCTCGGCACCGTCGGTGAACGCGTTCAAGAAGAGTTTGACATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAG----TAAAGT
Reference ( family-540 ) : TTTCAACTTATCTCTAAGATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTGGAATATTAGAAAGGATTGTTCAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCNTGCCATCAGCACGGCTTTNAGAAAAAGAGCTCANTTGTTACACNNTTACTTGAATGCCTAAATGANTGGACTGAATCCTTTNATAGNAAGCAAGCTANNGACNTTATATACTTAGATTTTGCTAAGGCCTTCGACACTGTTCCTNATTTAAGAGACTNATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTNGATAGAGTCCTTTCTGGCTNATAGACGGCNAAGAGTGGTTTNNCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTNNCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTANATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAGCTTCTCCAGGAACGCTTAAATTCATNAGCTGCTTGGGCAAATC------TACTTCATTTTAACGAGAAAAAGTGTAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTA---AATATTCACTTAATGGTATCATCTTGGAAGAAGAGGAGAGTCAGAAGGATTTGGGTGTGTTTATATCAAACACTTTGAAGCCAGATATTC-ATATTTCAAAGGTTGT-AAAAAAA-GGCTAATACAAGAATAGG----ACTTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACGACCGNTATTAGAATACGGATCACCTGTGTGGTCACCATATTTAAG-AAAAGATATTGATCAATTAGATAAAGTTCA-AAGGCGGTGCCTCGGACTTTCTAACGACACGGTTCATTTACCTAGCCTACAGAGCAGAAGATTTTGTCAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACAATTTTTCACA-TTTTGTGATACTCCTACTCGTGGTCATCACATGAAACTTGAAAAACATTACGCNCGTACTGACATTCGTAAACACT--TTTTTGCTAACCGTGTTGTTGAT-AAGTGGAATAANC-TTCCAT--CAAGCATGATCTCGGCACCGTCGGTGAACGCGTTCAAGAAGAGTTTGACATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAG----TAAAGT
gi|1 : TTTCAACTTATCTCTAAAATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTAGAATATTAGAAAAGATTGTTTAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCTTGCCATCAGCACGGCTTTAAGAAAAAGAGCTCAATTATTACACTGTTACTTGAATGTCTAAATGAATGGACTGAATCCTTTGATAACAAGCAAGCTACGGATTTTATATACTTAGATTTTGCTAAGGTCTTCGACACTGTTCCTGA--TAAGAGACTAATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTGGATAGAGTCCTTTCTGGCTTATAGACGGCAAAGAGTAGTTTTTCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTCCCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTAAATTATATTGCATTGCCAGTGATGTAGAGAACTGCAAGCTTCTCCAGGAAGGCTTAAATTCATTAGCTGCTTGGGCAAATCATCGGTTACTTCAATTTAACGAGAAAAAGTGTATAGTTATCAAATTAAGACAATCC-CTTGATTTTA---AAGATTCACTTAATGGTATTATCTTGGATGAAGAGGAGAGTCAGAAGGATTTTGGTGTATTTATATCAAATACTTTGAAGCCAGACATTC-GTATGTCAAAGGTTAT--GAAAAA-GGCTAATACAAGAATAGG----ACGTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATATTACCATGATACGACCGTTATTAGAATACGGATCCACTGTGGGGTCACCATATTTTAG-AAAAGATATTGAACAATTAGATAAAGGTCA-ATGGCGATGCCTCGGACTTTCTAATGACACGGTTCATTTATTTAGCTTACACAGCAGAAGATTTTATTAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTAATAGTTAAC-ATTTTTTACA-TGTTTTGATACTGTTACTCGTGGTCATCAAATGAAACTTGAAAAATATAATGCACGTACTGACATTCGTAAACATT--TTTTTGCTTACCATGTTGTTAAT-AAGTGGAATAAGC-TTCCAT--CAAGCATGATCTCAACACCGTCGGTGAACACGTTCAAGAAGAATTTGAGATCCCTACCTGATGGCGAAGCGG-ATAATCCAGTAAAG----TAAAGT
gi|10 : TATTTAAG-AAAAGACATTGAACAATAAGATAAAGTTCA-AAGACGGTGCCTCAGACTTTCTAACGACAATGTTCATTTACCTAGCCTACAGAACAGAAGATTTTGTCAAG--ATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACATTTTTTTACA-TTTTGTGATACTCCTAC
gi|11 : gTGTTGAT-AAGTGTAATAACC-TTTCAT--CA
gi|11 : CACATTTAAGAAGAGTTTGACATCCCTACCTGATGGTGAAGGGG-ATAATCCAGTAAAG-----AAAcatttaagaagagtttgacatccctacctgatggtgaaggggataatccagtaaagaaattaaaatgcctgtaaaatacttgtaaactaaacat
gi|12 : tgttgataagtgtaataacctttcatTGTTGAT-AAGTGGAAT--------------AAGCTT----------CCATCG-------CATTCAAGAAGAGTTTGTCATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAGAAATTAAAGTttaaaatgcctgtaaaatacttgtaaactaaacat
gi|13 : aTGTTGAT-AAGTGGAATAACC-TTCCAT--C--GCAAGAgcctgtaaaatacttgtaaac
gi|13 : CAAGAAGAGTTTGACATCCCCACCTGATGGCGAAGGGGAAAAATCCAGTAAAG-----AAAGTagagtttgacatccccacctgatggcgaaggggaaaaatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaacat
gi|14 : tgttgataagtggaataaccttccatcgTGTTGAT-AAGTGGAATAACC-TTCCATCGCAAGAA-GAGTTCGACATCCTCaaagtgcctgtaaaatatttgtaaacat
gi|14 : CAAGAAGAGTTCGACATCCTCACATGATGGCGAAGGGG-ATAATCCAGTAAAG-----AAAGTacatgatggcgaaggggataatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaacat
gi|15 : tgttgataagtggaataaccttccatcgTGTTGAT-AAGTGGAATAACC-TTCCATCGCAAGAA-GACTTTGACATCaaagtgcctgtaaaatatttgtaaacat
gi|15 : CAAGAAGACTTTGACATCCCTACCTGATGTCGAAGGAG-ATAATCCAGTAAAG-----AAAGTcctacctgatgtcgaaggagataatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaa
gi|16 : tgttgataagtggaataaccttccatcgCGCATTCATGCAGAGTTTGACATCCCTGCCTGATGGTGAAGGGG-ATAATCCAGTAAAG-----AAAaaagtgcctgtaaaatatttgtaaa
gi|2 : tccatTTTCAACTTATCTCTAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTCATTGAAATATTAAAAAGGATTATTCAGAACAAATTAGTCAAGCATGTTAAAAATAATCAGATCATCTCGTGCCATCAGCATGGCTTTCAGAAAAAGAGCTTATTTGTTACACATTTACTTGAATGCCTAAATGACTGGACTGAATCCTTTCATAGAAAGCAAACTAATGACATTATATACTTAGATTTTGCTAAGACCTTCGACACTGTTCCTCATTTAAGAGACTTATACTGAAAT------------------AAGGAA-----CTATGTTC-----AGT------TGGCTGATAAACAACCAAGAGTGGTTTAGCCAGGTGGTTCTTCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AACAGTCAGGTGCACTCAACAGTGAAAATGTTCACAGATGACACTACATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAACTTCTCCAGAAACACTTAAATTCATAAGCTGCTTGGGCAAATC-------ACTGC--TTTAACGTGAAAAAGTATAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTAAATAATATTCACTGAATGGTATCAGCTTGGAAGAAGAGGACAGTCAGAAGGATTTGGGTGTATTCATATCAAACACTTTGAAGACAGATATTC-ATATTTCAAAGGTTGTAAAAAAAA-GGTTAATACAAGAATAGGTAAAGATTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACTGCCAGTATTAGAATACAGATCACCTGTGTGGTCACTATATTTAAGAAAAAGGTATTGA---------------TCA-AAGGCGGTGCCTCAGACTATCTAACGACACATTTCATTTACCTAGTCTACAGAGCAGAAGATTTTGTCAAGAC--GTGTGAAACTTACAAGTTCATAAATAATTTAT-ACATAACTGATAGCTCACAATTTTTCACA-TTTTGTGATACTCCTACTCATGGTCATCACATGAAACTTGTAAAACA-------CGTACTGACATTCGTAAACACT--TTTTTGTTAACGGTGTTGTTGAC-AAGTGGAAAAAGC-TTCCGT--CAAGCACGATCTCAGCACCGTCGGTGAACGGGCTCAAGAAGACTGTGAGATTCGCACCTCATGGTGAATGAG-ATACTCCACTAAAG----TAAAGTttaaattgcctgtaaaataaacat
gi|3 : AATAAAAAAATCCAC---ATCTGT---AATATTTTCGCAATGG-A-CATCTTGAAAGAAGAAGAACGTATAAAGGGTGTGGGTGGGTTTGTATCGAACACTTAGAAGCCCGAAATTTTATTTTTCAGACGTTG--AAAAAAA-GGCTAAAAACAGAATAGG----ATTTATC------------------------AAACGATGTTTTACTGATTATAT---ACCTG-AGAAGATTAAG----GCTGTATATATTACCTTGATACGACCGTTATAAAAATACGGATCTCCTGTGTGGTTACCATATTTAAG-AAAAGATATTGATTAATTAGATGAAGTCTATACCGCGGTGCCTCGGATTATCTAACAACATGCTTCGTTTACCTAATCCACAGAGCACACGATTTTA-CAAGACATGTGTGAAACTTACAAGTTCATAAATGATTTTTAACAGTACTGGTAGTTCACAATAACTCACA-TTTAGTGAAACTCATACTC---GTCATCACATTAAACTTGACAAACATTACGCTTGTACTATCATTCGAAAACACTTATTTTTGCTAACCGTGTTGTTGAT-AAGTTGAATAAGC-TTCCAT--CAGAAATGATCTCAGCAaaaggtaaagtat
gi|4 : CATCATATTTAAT-AAAATATATTGATCATGTAGATAAAGTTCA-AAGGCGGTGCCTCAAACTTTCTAACGAGACAGTTCATTTGCCTAGCCTACAGAACATAAGATTTTGGCAAGACGTGTTTGAAACTTA--AGTCCATCAATAATCTAT-ACAAAACTGATAGTTCACAATATCTCACT-TTTTGTGATACTCCAAGTCGTGGTCATCACACGAAACTTGAAAAACATTTCGCTCGTACTGACATTCGTAAACAC---TTGTTGCTAACTGTGTTGTTGAT-AAGCGGATTAAAC-TTCCAT--CTAGCCTGATCC-----CTGTTGGTGAACACGCTCAAGAG---------ATCCCTACCTGATGGCGAAGGGC-ATAATCAAGTAGCA----TAAAGT
gi|5 : TGGGTGTGTTTATATAAAACACTTTGAAGCCAGATATTC-ATATTTTAAAGGTTGT-AAAAAAAAGGCTATTACAGGAATAAG----ACTTATC------------------------TAACGATGTTTTACTGATTACAAGATACATGTATAAGATAACG----ACCTTATATGTTACCGAGATGCGATTGGTATTAGAATACGGAACACCTGTGTGGTCGCCATATTTAAC-AAAGTATATTGATCAATTAGATAAAGTTCA-AAGACGGTGCCTCAGACTTTCTAACGACATGGTTCATTTACCTAGCCTACAGAGAAGAAGATTTTGTCAAGAAATGTGTGTAACTTACAAGTTTATAAATAATCTAT-ACAGAACTGATAGTTCag
gi|6 : TTTGAACGAGAAAA---------TTG----GATAAGACAGTCC-CTTGATTTTA---AATATTCACTTAATGATATCTTCATGGAAGAAGAGGAGAGTCAGAAGGATATGGGTGAGTTTATATCTAACACATTGAAACCAGATATTC-ATATTTCAATGGTTGT-CAAAAG--GGCTAATACAAGAATAAG----ACTTATCAAGGACTTATATAGAAACTTACAAAAACGATGTGCTATTGACTATAG---ACTTG-AGAATACTAAAGAATACTTTATATGTTGCCATGATACGATCAATATTAAAAAACGCATCACCTGTATGGTCACCAT
gi|7 : acctg------TACCTCATTTTAACGAGAACAATTGTAACGTTACCAAAATAAGACAATCC-CTTGATTTTG---AATATTCACTTAATGGTATCATCTTGTATGAAGAGGAGAGTCAGAAGGAATTGGGTGTATTTATATCAAATACTTTAAAGCCAGACATTC-ATATTTCAAAGGTTGT-AAAAAAA-GGCTAATACAAGAATAGG----ACTTATC------------------------AAACGATATTGTACTGATTATAG---ACCTC-AGAAGATTAA
gi|8 : AGTTGT-AAGGTGGTGTCTCAGTCTTTCTAACGATAAGGTTCATTTACCTAGCCAACAGAGCAGAAGATTTTGTTAAGAAAAGTGTGAAACTTACAAGATCATAAATAATTTAT-ACAGAAATGAT-------AATTTTTCACATTTTTGTGAAACTCCTACTCGTGGTCATAAC
gi|9 : gtatattgagcatggaactgcaggttcccatCTC-TGGACATAACATGAAACCTGAAAAATATTATGCACCTACTGACATTTGTAAACACT--TTTTTGCTAACCGTATGGTTGACAAAATGGAATAAACATACCAC--CATGCATGATCCCAGCACCGTCGTTGAACACGTTCATGAAGAGTTTGAGATCCCTACCTGATGGC------G-ATAATCCAGTAcagagac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TAACAGAGAATAGATGCAAATAGATTTTATAAACCTG
Alignments
lowQualScore : 2 11 666666666666666666 22222 222222 222222 111 4444444 11 111 1111 666666666666666666666666 111 1111 111 11 22222
lowQualScore : 0 1 1 1 22 1 1 1 22 1 1 88 1 444444444444444444 77777 777777 999999 1 1 22 777 1 2 1 5555555 00 55 0 66 6 8 0 444 0 0 1 1 0 6 99 6 4444 444444444444444444444444 111 6 7777 1 1 6 7 5 1 1 1 00 5 6 9 4444 3 111 4 2 4 11 6 777 5 2 4 77777
lowQualScore : . . . . .. . . . .. . . .. . .................. ..... ...... ...... . . .. ... . . . ....... .. .. . .. . . . ... . . . . . . .. . .... ........................ ... . .... . . . . . . . . .. . . . .... . ... . . . .. . ... . . . .....
lowQualScore : 0 0 0 0 00 0 0 0 00 0 0 55 0 555555555555555555 55555 555555 000000 0 0 00 555 0 5 0 7777777 88 88 2 55 5 0 8 000 8 8 4 0 3 7 88 7 2222 222222222222222222222222 777 7 0000 0 0 7 8 7 4 7 4 99 7 7 3 2222 8 888 0 4 0 00 4 999 0 7 0 77777
consensus : TTTCAACTTATCTCTAAGATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTGGAATATTAGAAAGGATTGTTCAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCNTGCCATCAGCACGGCTTTNAGAAAAAGAGCTCANTTGTTACACNNTTACTTGAATGCCTAAATGANTGGACTGAATCCTTTNATAGNAAGCAAGCTANNGACNTTATATACTTAGATTTTGCTAAGGCCTTCGACACTGTTCCTNATTTAAGAGACTNATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTNGATAGAGTCCTTTCTGGCTNATAGACGGCNAAGAGTGGTTTNNCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTNNCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTANATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAGCTTCTCCAGGAACGCTTAAATTCATNAGCTGCTTGGGCAAATC------TACTTCATTTTAACGAGAAAAAGTGTAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTA---AATATTCACTTAATGGTATCATCTTGGAAGAAGAGGAGAGTCAGAAGGATTTGGGTGTGTTTATATCAAACACTTTGAAGCCAGATATTC-ATATTTCAAAGGTTGT-AAAAAAA-GGCTAATACAAGAATAGG----ACTTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACGACCGNTATTAGAATACGGATCACCTGTGTGGTCACCATATTTAAG-AAAAGATATTGATCAATTAGATAAAGTTCA-AAGGCGGTGCCTCGGACTTTCTAACGACACGGTTCATTTACCTAGCCTACAGAGCAGAAGATTTTGTCAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACAATTTTTCACA-TTTTGTGATACTCCTACTCGTGGTCATCACATGAAACTTGAAAAACATTACGCNCGTACTGACATTCGTAAACACT--TTTTTGCTAACCGTGTTGTTGAT-AAGTGGAATAANC-TTCCAT--CAAGCATGATCTCGGCACCGTCGGTGAACGCGTTCAAGAAGAGTTTGACATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAG----TAAAGT
Reference ( family-540 ) : TTTCAACTTATCTCTAAGATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTGGAATATTAGAAAGGATTGTTCAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCNTGCCATCAGCACGGCTTTNAGAAAAAGAGCTCANTTGTTACACNNTTACTTGAATGCCTAAATGANTGGACTGAATCCTTTNATAGNAAGCAAGCTANNGACNTTATATACTTAGATTTTGCTAAGGCCTTCGACACTGTTCCTNATTTAAGAGACTNATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTNGATAGAGTCCTTTCTGGCTNATAGACGGCNAAGAGTGGTTTNNCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTNNCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTANATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAGCTTCTCCAGGAACGCTTAAATTCATNAGCTGCTTGGGCAAATC------TACTTCATTTTAACGAGAAAAAGTGTAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTA---AATATTCACTTAATGGTATCATCTTGGAAGAAGAGGAGAGTCAGAAGGATTTGGGTGTGTTTATATCAAACACTTTGAAGCCAGATATTC-ATATTTCAAAGGTTGT-AAAAAAA-GGCTAATACAAGAATAGG----ACTTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACGACCGNTATTAGAATACGGATCACCTGTGTGGTCACCATATTTAAG-AAAAGATATTGATCAATTAGATAAAGTTCA-AAGGCGGTGCCTCGGACTTTCTAACGACACGGTTCATTTACCTAGCCTACAGAGCAGAAGATTTTGTCAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACAATTTTTCACA-TTTTGTGATACTCCTACTCGTGGTCATCACATGAAACTTGAAAAACATTACGCNCGTACTGACATTCGTAAACACT--TTTTTGCTAACCGTGTTGTTGAT-AAGTGGAATAANC-TTCCAT--CAAGCATGATCTCGGCACCGTCGGTGAACGCGTTCAAGAAGAGTTTGACATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAG----TAAAGT
gi|1 : TTTCAACTTATCTCTAAAATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTAGAATATTAGAAAAGATTGTTTAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCTTGCCATCAGCACGGCTTTAAGAAAAAGAGCTCAATTATTACACTGTTACTTGAATGTCTAAATGAATGGACTGAATCCTTTGATAACAAGCAAGCTACGGATTTTATATACTTAGATTTTGCTAAGGTCTTCGACACTGTTCCTGA--TAAGAGACTAATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTGGATAGAGTCCTTTCTGGCTTATAGACGGCAAAGAGTAGTTTTTCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTCCCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTAAATTATATTGCATTGCCAGTGATGTAGAGAACTGCAAGCTTCTCCAGGAAGGCTTAAATTCATTAGCTGCTTGGGCAAATCATCGGTTACTTCAATTTAACGAGAAAAAGTGTATAGTTATCAAATTAAGACAATCC-CTTGATTTTA---AAGATTCACTTAATGGTATTATCTTGGATGAAGAGGAGAGTCAGAAGGATTTTGGTGTATTTATATCAAATACTTTGAAGCCAGACATTC-GTATGTCAAAGGTTAT--GAAAAA-GGCTAATACAAGAATAGG----ACGTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATATTACCATGATACGACCGTTATTAGAATACGGATCCACTGTGGGGTCACCATATTTTAG-AAAAGATATTGAACAATTAGATAAAGGTCA-ATGGCGATGCCTCGGACTTTCTAATGACACGGTTCATTTATTTAGCTTACACAGCAGAAGATTTTATTAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTAATAGTTAAC-ATTTTTTACA-TGTTTTGATACTGTTACTCGTGGTCATCAAATGAAACTTGAAAAATATAATGCACGTACTGACATTCGTAAACATT--TTTTTGCTTACCATGTTGTTAAT-AAGTGGAATAAGC-TTCCAT--CAAGCATGATCTCAACACCGTCGGTGAACACGTTCAAGAAGAATTTGAGATCCCTACCTGATGGCGAAGCGG-ATAATCCAGTAAAG----TAAAGT
gi|10 : TATTTAAG-AAAAGACATTGAACAATAAGATAAAGTTCA-AAGACGGTGCCTCAGACTTTCTAACGACAATGTTCATTTACCTAGCCTACAGAACAGAAGATTTTGTCAAG--ATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACATTTTTTTACA-TTTTGTGATACTCCTAC
gi|11 : gTGTTGAT-AAGTGTAATAACC-TTTCAT--CA
gi|11 : CACATTTAAGAAGAGTTTGACATCCCTACCTGATGGTGAAGGGG-ATAATCCAGTAAAG-----AAAcatttaagaagagtttgacatccctacctgatggtgaaggggataatccagtaaagaaattaaaatgcctgtaaaatacttgtaaactaaacat
gi|12 : tgttgataagtgtaataacctttcatTGTTGAT-AAGTGGAAT--------------AAGCTT----------CCATCG-------CATTCAAGAAGAGTTTGTCATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAGAAATTAAAGTttaaaatgcctgtaaaatacttgtaaactaaacat
gi|13 : aTGTTGAT-AAGTGGAATAACC-TTCCAT--C--GCAAGAgcctgtaaaatacttgtaaac
gi|13 : CAAGAAGAGTTTGACATCCCCACCTGATGGCGAAGGGGAAAAATCCAGTAAAG-----AAAGTagagtttgacatccccacctgatggcgaaggggaaaaatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaacat
gi|14 : tgttgataagtggaataaccttccatcgTGTTGAT-AAGTGGAATAACC-TTCCATCGCAAGAA-GAGTTCGACATCCTCaaagtgcctgtaaaatatttgtaaacat
gi|14 : CAAGAAGAGTTCGACATCCTCACATGATGGCGAAGGGG-ATAATCCAGTAAAG-----AAAGTacatgatggcgaaggggataatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaacat
gi|15 : tgttgataagtggaataaccttccatcgTGTTGAT-AAGTGGAATAACC-TTCCATCGCAAGAA-GACTTTGACATCaaagtgcctgtaaaatatttgtaaacat
gi|15 : CAAGAAGACTTTGACATCCCTACCTGATGTCGAAGGAG-ATAATCCAGTAAAG-----AAAGTcctacctgatgtcgaaggagataatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaa
gi|16 : tgttgataagtggaataaccttccatcgCGCATTCATGCAGAGTTTGACATCCCTGCCTGATGGTGAAGGGG-ATAATCCAGTAAAG-----AAAaaagtgcctgtaaaatatttgtaaa
gi|2 : tccatTTTCAACTTATCTCTAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTCATTGAAATATTAAAAAGGATTATTCAGAACAAATTAGTCAAGCATGTTAAAAATAATCAGATCATCTCGTGCCATCAGCATGGCTTTCAGAAAAAGAGCTTATTTGTTACACATTTACTTGAATGCCTAAATGACTGGACTGAATCCTTTCATAGAAAGCAAACTAATGACATTATATACTTAGATTTTGCTAAGACCTTCGACACTGTTCCTCATTTAAGAGACTTATACTGAAAT------------------AAGGAA-----CTATGTTC-----AGT------TGGCTGATAAACAACCAAGAGTGGTTTAGCCAGGTGGTTCTTCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AACAGTCAGGTGCACTCAACAGTGAAAATGTTCACAGATGACACTACATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAACTTCTCCAGAAACACTTAAATTCATAAGCTGCTTGGGCAAATC-------ACTGC--TTTAACGTGAAAAAGTATAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTAAATAATATTCACTGAATGGTATCAGCTTGGAAGAAGAGGACAGTCAGAAGGATTTGGGTGTATTCATATCAAACACTTTGAAGACAGATATTC-ATATTTCAAAGGTTGTAAAAAAAA-GGTTAATACAAGAATAGGTAAAGATTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACTGCCAGTATTAGAATACAGATCACCTGTGTGGTCACTATATTTAAGAAAAAGGTATTGA---------------TCA-AAGGCGGTGCCTCAGACTATCTAACGACACATTTCATTTACCTAGTCTACAGAGCAGAAGATTTTGTCAAGAC--GTGTGAAACTTACAAGTTCATAAATAATTTAT-ACATAACTGATAGCTCACAATTTTTCACA-TTTTGTGATACTCCTACTCATGGTCATCACATGAAACTTGTAAAACA-------CGTACTGACATTCGTAAACACT--TTTTTGTTAACGGTGTTGTTGAC-AAGTGGAAAAAGC-TTCCGT--CAAGCACGATCTCAGCACCGTCGGTGAACGGGCTCAAGAAGACTGTGAGATTCGCACCTCATGGTGAATGAG-ATACTCCACTAAAG----TAAAGTttaaattgcctgtaaaataaacat
gi|3 : AATAAAAAAATCCAC---ATCTGT---AATATTTTCGCAATGG-A-CATCTTGAAAGAAGAAGAACGTATAAAGGGTGTGGGTGGGTTTGTATCGAACACTTAGAAGCCCGAAATTTTATTTTTCAGACGTTG--AAAAAAA-GGCTAAAAACAGAATAGG----ATTTATC------------------------AAACGATGTTTTACTGATTATAT---ACCTG-AGAAGATTAAG----GCTGTATATATTACCTTGATACGACCGTTATAAAAATACGGATCTCCTGTGTGGTTACCATATTTAAG-AAAAGATATTGATTAATTAGATGAAGTCTATACCGCGGTGCCTCGGATTATCTAACAACATGCTTCGTTTACCTAATCCACAGAGCACACGATTTTA-CAAGACATGTGTGAAACTTACAAGTTCATAAATGATTTTTAACAGTACTGGTAGTTCACAATAACTCACA-TTTAGTGAAACTCATACTC---GTCATCACATTAAACTTGACAAACATTACGCTTGTACTATCATTCGAAAACACTTATTTTTGCTAACCGTGTTGTTGAT-AAGTTGAATAAGC-TTCCAT--CAGAAATGATCTCAGCAaaaggtaaagtat
gi|4 : CATCATATTTAAT-AAAATATATTGATCATGTAGATAAAGTTCA-AAGGCGGTGCCTCAAACTTTCTAACGAGACAGTTCATTTGCCTAGCCTACAGAACATAAGATTTTGGCAAGACGTGTTTGAAACTTA--AGTCCATCAATAATCTAT-ACAAAACTGATAGTTCACAATATCTCACT-TTTTGTGATACTCCAAGTCGTGGTCATCACACGAAACTTGAAAAACATTTCGCTCGTACTGACATTCGTAAACAC---TTGTTGCTAACTGTGTTGTTGAT-AAGCGGATTAAAC-TTCCAT--CTAGCCTGATCC-----CTGTTGGTGAACACGCTCAAGAG---------ATCCCTACCTGATGGCGAAGGGC-ATAATCAAGTAGCA----TAAAGT
gi|5 : TGGGTGTGTTTATATAAAACACTTTGAAGCCAGATATTC-ATATTTTAAAGGTTGT-AAAAAAAAGGCTATTACAGGAATAAG----ACTTATC------------------------TAACGATGTTTTACTGATTACAAGATACATGTATAAGATAACG----ACCTTATATGTTACCGAGATGCGATTGGTATTAGAATACGGAACACCTGTGTGGTCGCCATATTTAAC-AAAGTATATTGATCAATTAGATAAAGTTCA-AAGACGGTGCCTCAGACTTTCTAACGACATGGTTCATTTACCTAGCCTACAGAGAAGAAGATTTTGTCAAGAAATGTGTGTAACTTACAAGTTTATAAATAATCTAT-ACAGAACTGATAGTTCag
gi|6 : TTTGAACGAGAAAA---------TTG----GATAAGACAGTCC-CTTGATTTTA---AATATTCACTTAATGATATCTTCATGGAAGAAGAGGAGAGTCAGAAGGATATGGGTGAGTTTATATCTAACACATTGAAACCAGATATTC-ATATTTCAATGGTTGT-CAAAAG--GGCTAATACAAGAATAAG----ACTTATCAAGGACTTATATAGAAACTTACAAAAACGATGTGCTATTGACTATAG---ACTTG-AGAATACTAAAGAATACTTTATATGTTGCCATGATACGATCAATATTAAAAAACGCATCACCTGTATGGTCACCAT
gi|7 : acctg------TACCTCATTTTAACGAGAACAATTGTAACGTTACCAAAATAAGACAATCC-CTTGATTTTG---AATATTCACTTAATGGTATCATCTTGTATGAAGAGGAGAGTCAGAAGGAATTGGGTGTATTTATATCAAATACTTTAAAGCCAGACATTC-ATATTTCAAAGGTTGT-AAAAAAA-GGCTAATACAAGAATAGG----ACTTATC------------------------AAACGATATTGTACTGATTATAG---ACCTC-AGAAGATTAA
gi|8 : AGTTGT-AAGGTGGTGTCTCAGTCTTTCTAACGATAAGGTTCATTTACCTAGCCAACAGAGCAGAAGATTTTGTTAAGAAAAGTGTGAAACTTACAAGATCATAAATAATTTAT-ACAGAAATGAT-------AATTTTTCACATTTTTGTGAAACTCCTACTCGTGGTCATAAC
gi|9 : gtatattgagcatggaactgcaggttcccatCTC-TGGACATAACATGAAACCTGAAAAATATTATGCACCTACTGACATTTGTAAACACT--TTTTTGCTAACCGTATGGTTGACAAAATGGAATAAACATACCAC--CATGCATGATCCCAGCACCGTCGTTGAACACGTTCATGAAGAGTTTGAGATCCCTACCTGATGGC------G-ATAATCCAGTAcagagac
blockSeqs : N G C T AT C C A AT A C TT T . . C . G C AG AA C C A T AT AG AA C A AAT A T T AA A TAAA AAGGACTTATATAGAAACTTACAA GAT T GAAT G A A A T A A T A T A TTAC T TTA A C A CG T CGA G A A AAATT
blockSeqs : . . AT AC C . . A G . A . . . . . . T T . T . A C T . . G TTTC T T . C . CG A TGA G G . T
blockSeqs : . . . . . A A . A . . . . . . G A . T . G T G . . G TTAT A T . C . . C CAG T G . T
blockSeqs : . . T T . C . . . . . . A A . T . A C T . . . . . . . C . . T CAG . A . .
blockSeqs : . A . . . . . . . . A T T . . . . G . . T CAG A . .
blockSeqs : . A A . . . G . . T . . . .
blockSeqs : . A . . . . . .
blockSeqs : . A . . . . .
blockSeqs : . . . . .
blockSeqCons : A* *****
originalCons : TTTCAACTTATCTCTAAGATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTGGAATATTAGAAAGGATTGTTCAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCNTGCCATCAGCACGGCTTTNAGAAAAAGAGCTCANTTGTTACACNNTTACTTGAATGCCTAAATGANTGGACTGAATCCTTTNATAGNAAGCAAGCTANNGACNTTATATACTTAGATTTTGCTAAGGCCTTCGACACTGTTCCTNATTTAAGAGACTNATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTNGATAGAGTCCTTTCTGGCTNATAGACGGCNAAGAGTGGTTTNNCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTNNCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTANATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAGCTTCTCCAGGAACGCTTAAATTCATNAGCTGCTTGGGCAAATC------TACTTCATTTTAACGAGAAAAAGTGTAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTA---AATATTCACTTAATGGTATCATCTTGGAAGAAGAGGAGAGTCAGAAGGATTTGGGTGTGTTTATATCAAACACTTTGAAGCCAGATATTC-ATATTTCAAAGGTTGT-AAAAAAA-GGCTAATACAAGAATAGG----ACTTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACGACCGNTATTAGAATACGGATCACCTGTGTGGTCACCATATTTAAG-AAAAGATATTGATCAATTAGATAAAGTTCA-AAGGCGGTGCCTCGGACTTTCTAACGACACGGTTCATTTACCTAGCCTACAGAGCAGAAGATTTTGTCAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACAATTTTTCACA-TTTTGTGATACTCCTACTCGTGGTCATCACATGAAACTTGAAAAACATTACGCNCGTACTGACATTCGTAAACACT--TTTTTGCTAACCGTGTTGTTGAT-AAGTGGAATAANC-TTCCAT--CAAGCATGATCTCGGCACCGTCGGTGAACGCGTTCAAGAAGAGTTTGACATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAG----TAAAGT
finalCons : TTTCAACTTATCTCTAAGATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTGGAATATTAGAAAGGATTGTTCAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCNTGCCATCAGCACGGCTTTNAGAAAAAGAGCTCANTTGTTACACNNTTACTTGAATGCCTAAATGANTGGACTGAATCCTTTNATAGNAAGCAAGCTANNGACNTTATATACTTAGATTTTGCTAAGGCCTTCGACACTGTTCCTNATTTAAGAGACTNATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTNGATAGAGTCCTTTCTGGCTNATAGACGGCNAAGAGTGGTTTNNCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTNNCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTANATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAGCTTCTCCAGGAACGCTTAAATTCATNAGCTGCTTGGGCAAATC------TACTTCATTTTAACGAGAAAAAGTGTAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTA---AATATTCACTTAATGGTATCATCTTGGAAGAAGAGGAGAGTCAGAAGGATTTGGGTGTGTTTATATCAAACACTTTGAAGCCAGATATTC-ATATTTCAAAGGTTGTA-AAAAAA-GGCTAATACAAGAATAGG----ACTTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACGACCGNTATTAGAATACGGATCACCTGTGTGGTCACCATATTTAAG-AAAAGATATTGATCAATTAGATAAAGTTCA-AAGGCGGTGCCTCGGACTTTCTAACGACACGGTTCATTTACCTAGCCTACAGAGCAGAAGATTTTGTCAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACAATTTTTCACA-TTTTGTGATACTCCTACTCGTGGTCATCACATGAAACTTGAAAAACATTACGCNCGTACTGACATTCGTAAACACT--TTTTTGCTAACCGTGTTGTTGAT-AAGTGGAATAANC-TTCCAT--CAAGCATGATCTCGGCACCGTCGGTGAACGCGTTCAAGAAGAGTTTGACATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAAAG-----AAAGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TAACAGAGAATAGATGCAAATAGATTTTATAAACCTG
Alignments
lowQualScore : 2 11 666666666666666666 22222 222222 222222 111 4444444 11 111 1111 666666666666666666666666 111 1111 111 11
lowQualScore : 0 1 1 1 22 1 1 1 22 1 1 88 1 444444444444444444 77777 777777 999999 1 1 22 777 1 2 1 5555555 00 55 0 66 6 8 0 444 0 0 1 1 0 6 99 6 4444 444444444444444444444444 111 6 7777 1 1 6 7 5 1 1 1 00 5 6 9 4444 3 111 4 2 4 11 6 777 5 2 4 4 8
lowQualScore : . . . . .. . . . .. . . .. . .................. ..... ...... ...... . . .. ... . . . ....... .. .. . .. . . . ... . . . . . . .. . .... ........................ ... . .... . . . . . . . . .. . . . .... . ... . . . .. . ... . . . . .
lowQualScore : 0 0 0 0 00 0 0 0 00 0 0 55 0 555555555555555555 55555 555555 000000 0 0 00 555 0 5 0 7777777 88 88 2 55 5 0 8 000 8 8 4 0 3 7 88 7 2222 222222222222222222222222 777 7 0000 0 0 7 8 7 4 7 4 99 7 7 3 2222 8 888 0 4 0 00 4 999 0 7 0 4 9
consensus : TTTCAACTTATCTCTAAGATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTGGAATATTAGAAAGGATTGTTCAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCNTGCCATCAGCACGGCTTTNAGAAAAAGAGCTCANTTGTTACACNNTTACTTGAATGCCTAAATGANTGGACTGAATCCTTTNATAGNAAGCAAGCTANNGACNTTATATACTTAGATTTTGCTAAGGCCTTCGACACTGTTCCTNATTTAAGAGACTNATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTNGATAGAGTCCTTTCTGGCTNATAGACGGCNAAGAGTGGTTTNNCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTNNCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTANATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAGCTTCTCCAGGAACGCTTAAATTCATNAGCTGCTTGGGCAAATC------TACTTCATTTTAACGAGAAAAAGTGTAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTA---AATATTCACTTAATGGTATCATCTTGGAAGAAGAGGAGAGTCAGAAGGATTTGGGTGTGTTTATATCAAACACTTTGAAGCCAGATATTC-ATATTTCAAAGGTTGT-AAAAAAA-GGCTAATACAAGAATAGG----ACTTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACGACCGNTATTAGAATACGGATCACCTGTGTGGTCACCATATTTAAG-AAAAGATATTGATCAATTAGATAAAGTTCA-AAGGCGGTGCCTCGGACTTTCTAACGACACGGTTCATTTACCTAGCCTACAGAGCAGAAGATTTTGTCAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACAATTTTTCACA-TTTTGTGATACTCCTACTCGTGGTCATCACATGAAACTTGAAAAACATTACGCNCGTACTGACATTCGTAAACACT--TTTTTGCTAACCGTGTTGTTGAT-AAGTGGAATAANC-TTCCAT--CAAGCATGATCTCGGCACCGTCGGTGAACGCGTTCAAGAAGAGTTTGACATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAA-AG-AAAGT
Reference ( family-540 ) : TTTCAACTTATCTCTAAGATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTGGAATATTAGAAAGGATTGTTCAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCNTGCCATCAGCACGGCTTTNAGAAAAAGAGCTCANTTGTTACACNNTTACTTGAATGCCTAAATGANTGGACTGAATCCTTTNATAGNAAGCAAGCTANNGACNTTATATACTTAGATTTTGCTAAGGCCTTCGACACTGTTCCTNATTTAAGAGACTNATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTNGATAGAGTCCTTTCTGGCTNATAGACGGCNAAGAGTGGTTTNNCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTNNCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTANATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAGCTTCTCCAGGAACGCTTAAATTCATNAGCTGCTTGGGCAAATC------TACTTCATTTTAACGAGAAAAAGTGTAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTA---AATATTCACTTAATGGTATCATCTTGGAAGAAGAGGAGAGTCAGAAGGATTTGGGTGTGTTTATATCAAACACTTTGAAGCCAGATATTC-ATATTTCAAAGGTTGT-AAAAAAA-GGCTAATACAAGAATAGG----ACTTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACGACCGNTATTAGAATACGGATCACCTGTGTGGTCACCATATTTAAG-AAAAGATATTGATCAATTAGATAAAGTTCA-AAGGCGGTGCCTCGGACTTTCTAACGACACGGTTCATTTACCTAGCCTACAGAGCAGAAGATTTTGTCAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACAATTTTTCACA-TTTTGTGATACTCCTACTCGTGGTCATCACATGAAACTTGAAAAACATTACGCNCGTACTGACATTCGTAAACACT--TTTTTGCTAACCGTGTTGTTGAT-AAGTGGAATAANC-TTCCAT--CAAGCATGATCTCGGCACCGTCGGTGAACGCGTTCAAGAAGAGTTTGACATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAA-AG-AAAGT
gi|1 : TTTCAACTTATCTCTAAAATCTGGAACTATTCCTCAGGATTGGCGCGATGCGAATATTACACCTCTCTTCAAGAAAGGATCACGTACTTCTGTTTCAAACTATAGGCCATGTCCTTGTCCTGT-CAGGTCATTAGAATATTAGAAAAGATTGTTTAGGACAAATTAGTCAAGCATGTTGAGGATAATCAGATCATCTCTTGCCATCAGCACGGCTTTAAGAAAAAGAGCTCAATTATTACACTGTTACTTGAATGTCTAAATGAATGGACTGAATCCTTTGATAACAAGCAAGCTACGGATTTTATATACTTAGATTTTGCTAAGGTCTTCGACACTGTTCCTGAT--AAGAGACTAATACTGAAATTACGAAGTTTTTGAATTAAAGGAAATATTCTACGTTGGATAGAGTCCTTTCTGGCTTATAGACGGCAAAGAGTAGTTTTTCCAGGTGGTTCTTCTTCATTGAAACCAGTATATTGTGGTGTTCCCCAAAGGTCGATTTAGGAGTCGATTAGGGGTCGATTAGGACGTTAATGACGTTCCCAGTCAGGTGCACTCAACAGTGAAAATGTTCGCGGATGACACTAAATTATATTGCATTGCCAGTGATGTAGAGAACTGCAAGCTTCTCCAGGAAGGCTTAAATTCATTAGCTGCTTGGGCAAATCATCGGTTACTTCAATTTAACGAGAAAAAGTGTATAGTTATCAAATTAAGACAATCC-CTTGATTTTA---AAGATTCACTTAATGGTATTATCTTGGATGAAGAGGAGAGTCAGAAGGATTTTGGTGTATTTATATCAAATACTTTGAAGCCAGACATTC-GTATGTCAAAGGTTAT--GAAAAA-GGCTAATACAAGAATAGG----ACGTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATATTACCATGATACGACCGTTATTAGAATACGGATCCACTGTGGGGTCACCATATTTTAG-AAAAGATATTGAACAATTAGATAAAGGTCA-ATGGCGATGCCTCGGACTTTCTAATGACACGGTTCATTTATTTAGCTTACACAGCAGAAGATTTTATTAAGACATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTAATAGTTAAC-ATTTTTTACA-TGTTTTGATACTGTTACTCGTGGTCATCAAATGAAACTTGAAAAATATAATGCACGTACTGACATTCGTAAACATT--TTTTTGCTTACCATGTTGTTAAT-AAGTGGAATAAGC-TTCCAT--CAAGCATGATCTCAACACCGTCGGTGAACACGTTCAAGAAGAATTTGAGATCCCTACCTGATGGCGAAGCGG-ATAATCCAGTAA-AGTAAAGT
gi|10 : TATTTAAG-AAAAGACATTGAACAATAAGATAAAGTTCA-AAGACGGTGCCTCAGACTTTCTAACGACAATGTTCATTTACCTAGCCTACAGAACAGAAGATTTTGTCAAG--ATGTGTGAAACTTACAAGTTCATAAATAATCTAT-ACAGAACTGATAGTTCACATTTTTTTACA-TTTTGTGATACTCCTAC
gi|11 : gTGTTGAT-AAGTGTAATAACC-TTTCAT--CA
gi|11 : CACATTTAAGAAGAGTTTGACATCCCTACCTGATGGTGAAGGGG-ATAATCCAGTAA-AG-AAAcatttaagaagagtttgacatccctacctgatggtgaaggggataatccagtaaagaaattaaaatgcctgtaaaatacttgtaaactaaacat
gi|12 : tgttgataagtgtaataacctttcatTGTTGAT-AAGTGGAAT--------------AAGCTT----------CCATCG-------CATTCAAGAAGAGTTTGTCATCCCTACCTGATGGCGAAGGGG-ATAATCCAGTAA-AG-AAAttaaaatgcctgtaaaatacttgtaaactaaacat
gi|13 : aTGTTGAT-AAGTGGAATAACC-TTCCAT--C--GCAAGAttaaagtgcctgtaaaatacttgtaaac
gi|13 : CAAGAAGAGTTTGACATCCCCACCTGATGGCGAAGGGGAAAAATCCAGTAA-AG-AAAGTagagtttgacatccccacctgatggcgaaggggaaaaatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaacat
gi|14 : tgttgataagtggaataaccttccatcgTGTTGAT-AAGTGGAATAACC-TTCCATCGCAAGAA-GAGTTCGACATCCTCaaagtgcctgtaaaatatttgtaaacat
gi|14 : CAAGAAGAGTTCGACATCCTCACATGATGGCGAAGGGG-ATAATCCAGTAA-AG-AAAGTacatgatggcgaaggggataatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaacat
gi|15 : tgttgataagtggaataaccttccatcgTGTTGAT-AAGTGGAATAACC-TTCCATCGCAAGAA-GACTTTGACATCaaagtgcctgtaaaatatttgtaaacat
gi|15 : CAAGAAGACTTTGACATCCCTACCTGATGTCGAAGGAG-ATAATCCAGTAA-AG-AAAGTcctacctgatgtcgaaggagataatccagtaaagaaagtaaagtgcctgtaaaatatttgtaaa
gi|16 : tgttgataagtggaataaccttccatcgCGCATTCATGCAGAGTTTGACATCCCTGCCTGATGGTGAAGGGG-ATAATCCAGTAA-AG-AAAaaagtgcctgtaaaatatttgtaaa
gi|2 : tccatTTTCAACTTATCTCTAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTCATTGAAATATTAAAAAGGATTATTCAGAACAAATTAGTCAAGCATGTTAAAAATAATCAGATCATCTCGTGCCATCAGCATGGCTTTCAGAAAAAGAGCTTATTTGTTACACATTTACTTGAATGCCTAAATGACTGGACTGAATCCTTTCATAGAAAGCAAACTAATGACATTATATACTTAGATTTTGCTAAGACCTTCGACACTGTTCCTCATTTAAGAGACTTATACTGAAAT------------------AAGGAA-----CTATGTTC-----AGT------TGGCTGATAAACAACCAAGAGTGGTTTAGCCAGGTGGTTCTTCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-AACAGTCAGGTGCACTCAACAGTGAAAATGTTCACAGATGACACTACATTATATCGCATTGCCAGTGATGTAGAGAACTGCGAACTTCTCCAGAAACACTTAAATTCATAAGCTGCTTGGGCAAATC-------ACTGC--TTTAACGTGAAAAAGTATAAAGTTGCCAAAATAAGACAATCC-CTTGATTTTAAATAATATTCACTGAATGGTATCAGCTTGGAAGAAGAGGACAGTCAGAAGGATTTGGGTGTATTCATATCAAACACTTTGAAGACAGATATTC-ATATTTCAAAGGTTGTAAAAAAAA-GGTTAATACAAGAATAGGTAAAGATTATC------------------------AAACGATGTTTTACTGATTATAG---ACCTG-AGAAGATTAAG----ACCTTATATGTTACCATGATACTGCCAGTATTAGAATACAGATCACCTGTGTGGTCACTATATTTAAGAAAAAGGTATTGA---------------TCA-AAGGCGGTGCCTCAGACTATCTAACGACACATTTCATTTACCTAGTCTACAGAGCAGAAGATTTTGTCAAGAC--GTGTGAAACTTACAAGTTCATAAATAATTTAT-ACATAACTGATAGCTCACAATTTTTCACA-TTTTGTGATACTCCTACTCATGGTCATCACATGAAACTTGTAAAACA-------CGTACTGACATTCGTAAACACT--TTTTTGTTAACGGTGTTGTTGAC-AAGTGGAAAAAGC-TTCCGT--CAAGCACGATCTCAGCACCGTCGGTGAACGGGCTCAAGAAGACTGTGAGATTCGCACCTCATGGTGAATGAG-ATACTCCACTAA-AGTAAAGTttaaattgcctgtaaaataaacat
gi|3 : AATAAAAAAATCCAC---ATCTGT---AATATTTTCGCAATGG-A-CATCTTGAAAGAAGAAGAACGTATAAAGGGTGTGGGTGGGTTTGTATCGAACACTTAGAAGCCCGAAATTTTATTTTTCAGACGTTG--AAAAAAA-GGCTAAAAACAGAATAGG----ATTTATC------------------------AAACGATGTTTTACTGATTATAT---ACCTG-AGAAGATTAAG----GCTGTATATATTACCTTGATACGACCGTTATAAAAATACGGATCTCCTGTGTGGTTACCATATTTAAG-AAAAGATATTGATTAATTAGATGAAGTCTATACCGCGGTGCCTCGGATTATCTAACAACATGCTTCGTTTACCTAATCCACAGAGCACACGATTTTA-CAAGACATGTGTGAAACTTACAAGTTCATAAATGATTTTTAACAGTACTGGTAGTTCACAATAACTCACA-TTTAGTGAAACTCATACTC---GTCATCACATTAAACTTGACAAACATTACGCTTGTACTATCATTCGAAAACACTTATTTTTGCTAACCGTGTTGTTGAT-AAGTTGAATAAGC-TTCCAT--CAGAAATGATCTCAGCAaaaggtaaagtat
gi|4 : CATCATATTTAAT-AAAATATATTGATCATGTAGATAAAGTTCA-AAGGCGGTGCCTCAAACTTTCTAACGAGACAGTTCATTTGCCTAGCCTACAGAACATAAGATTTTGGCAAGACGTGTTTGAAACTTA--AGTCCATCAATAATCTAT-ACAAAACTGATAGTTCACAATATCTCACT-TTTTGTGATACTCCAAGTCGTGGTCATCACACGAAACTTGAAAAACATTTCGCTCGTACTGACATTCGTAAACAC---TTGTTGCTAACTGTGTTGTTGAT-AAGCGGATTAAAC-TTCCAT--CTAGCCTGATCC-----CTGTTGGTGAACACGCTCAAGAG---------ATCCCTACCTGATGGCGAAGGGC-ATAATCAAGTAGCAT-AAAGT
gi|5 : TGGGTGTGTTTATATAAAACACTTTGAAGCCAGATATTC-ATATTTTAAAGGTTGT-AAAAAAAAGGCTATTACAGGAATAAG----ACTTATC------------------------TAACGATGTTTTACTGATTACAAGATACATGTATAAGATAACG----ACCTTATATGTTACCGAGATGCGATTGGTATTAGAATACGGAACACCTGTGTGGTCGCCATATTTAAC-AAAGTATATTGATCAATTAGATAAAGTTCA-AAGACGGTGCCTCAGACTTTCTAACGACATGGTTCATTTACCTAGCCTACAGAGAAGAAGATTTTGTCAAGAAATGTGTGTAACTTACAAGTTTATAAATAATCTAT-ACAGAACTGATAGTTCag
gi|6 : TTTGAACGAGAAAA---------TTG----GATAAGACAGTCC-CTTGATTTTA---AATATTCACTTAATGATATCTTCATGGAAGAAGAGGAGAGTCAGAAGGATATGGGTGAGTTTATATCTAACACATTGAAACCAGATATTC-ATATTTCAATGGTTGT-CAAAAG--GGCTAATACAAGAATAAG----ACTTATCAAGGACTTATATAGAAACTTACAAAAACGATGTGCTATTGACTATAG---ACTTG-AGAATACTAAAGAATACTTTATATGTTGCCATGATACGATCAATATTAAAAAACGCATCACCTGTATGGTCACCAT
gi|7 : acctg------TACCTCATTTTAACGAGAACAATTGTAACGTTACCAAAATAAGACAATCC-CTTGATTTTG---AATATTCACTTAATGGTATCATCTTGTATGAAGAGGAGAGTCAGAAGGAATTGGGTGTATTTATATCAAATACTTTAAAGCCAGACATTC-ATATTTCAAAGGTTGT-AAAAAAA-GGCTAATACAAGAATAGG----ACTTATC------------------------AAACGATATTGTACTGATTATAG---ACCTC-AGAAGATTAA
gi|8 : AGTTGT-AAGGTGGTGTCTCAGTCTTTCTAACGATAAGGTTCATTTACCTAGCCAACAGAGCAGAAGATTTTGTTAAGAAAAGTGTGAAACTTACAAGATCATAAATAATTTAT-ACAGAAATGAT-------AATTTTTCACATTTTTGTGAAACTCCTACTCGTGGTCATAAC
gi|9 : gtatattgagcatggaactgcaggttcccatCTC-TGGACATAACATGAAACCTGAAAAATATTATGCACCTACTGACATTTGTAAACACT--TTTTTGCTAACCGTATGGTTGACAAAATGGAATAAACATACCAC--CATGCATGATCCCAGCACCGTCGTTGAACACGTTCATGAAGAGTTTGAGATCCCTACCTGATGGC------G-ATAATCCAGTAcagagac
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TAACAGAGAATAGATGCAAATAGATTTTATAAACCTG