lowQualScore : 111111111111111111111111111111
lowQualScore : 11 444 111 11111 222 1111 22222222222 11111 111 111 1 1 1 1 11 1 2222 000000000000000000000000000000 33333 222 1 22 111111111 1111 1 1 11
lowQualScore : 99 0 000 000 44444 44 0 3 3 2 4 333 2222 66666666666 55555 4 55 4 999 555 1 4 4 4 6 4 4 6 0 2 55 5 2 1 5 66 7 2 66 1111 7 666666666666666666666666666666 55 8 7 1 99999 4 000 4 777 55 3 666 3 55 0 3 66 6 00 1 333333333 5555 44 44 1 6 3 4 2 6 3 44 4
lowQualScore : .. . ... ... ..... .. . . . . . ... .... ........... ..... . .. . ... ... . . . . . . . . . . .. . . . . .. . . .. .... . .............................. .. . . . ..... . ... . ... .. . ... . .. . . .. . .. . ......... .... .. .. . . . . . . . .. .
lowQualScore : 22 9 000 000 33333 99 9 2 0 3 3 333 1111 33333333333 00000 0 55 0 666 000 1 0 0 0 6 0 0 7 8 0 55 4 2 5 0 00 8 0 99 2222 1 111111111111111111111111111111 55 0 8 5 33333 3 222 0 000 66 0 444 9 00 9 6 00 8 66 0 333333333 0000 22 22 0 8 9 9 9 8 1 66 4
consensus : AATCTCGGCTGATTTTGACCGGAGGGAA---AACACAGCT-----TGATGCCGATTAATCCGATAANTGNTGTGTTAGTTGATTG---TTTATAGGGATA----GG--G-------ATCAAACTGGCAAGCCA--ATACAGT-GT--GACCT-TTA--GCGACTT---ATGTAAACGGTATAC-TG-A-AAATTAGG-AC-AAGTCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCATAAACGCTNATTCTCAGTAAACAGATCTGTAACAA-CT---------TGCGAAAAA-AATG----AATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA---AACATGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTGG--AGTGTGACGTCATTTG-CTGTATC---CACACGCGACAAGGACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTATTCGGGCTAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACA-AAGAAGGGCGGCGTTT-TTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACC
Reference ( gi|2 ) : AATCTCCACTGATTTTGAC---AGGGAA---AACACAGCT-----TGATGTTGATTAATCCGATAATTGATGTGTCAGTTGATTG---TTTATAGGGATA----GG--G-------GTCAAACTGGCAAGCAA--GTACAGT-GT--GACCT-TTT--GCGACTT---ATGTAAACAGTATAC-TG-A-AATTTAGG-AC-AAGTCTTCATAGCTTTT-CCAGA--CTGTCAGAGCAAAGTCTCAAAGTTAAATATGACGACATTGTCAGTAGCTTCGACCCTGAATTCCTCTGCAATTTACCTTTCAAAGTCAT--ATAGTA----AGCACAAACGCTTATTCTCAGTAAACAGATCTGTAACAA-CT---------T---------AATT----AATAATTCATTT--AGTTTCC-GAAATATGCACATCGGAAAAAA--CAACATGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTAG--TGTGTGACGTCATTTG-CTGTATC---CACATGCGACAAAGACCTGATCAGCT---GACT--GTTACAT-A-TTTAGCAAGAGAAGAACCGGTGAATACCTGTGTATTTTGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGAAATTGGGGCAGCAGGGCACATTTAAATA-AAGATGGGCGGCGTTT-TTAGGGCAGAAGGGTAGAGCCTAAAAGGGGCAGGGTGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACC
gi|3 : AATCTCGGCTGATTTNNNN---NNNNNN---NNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAGGGATA----GG--------------------CAAGCAA--ATACAGT-GT--GACCT-TCA--GCGACTT---ATGTAAGCAGTATACCTC-A-AATT-AAG-AC-AAATCTACATATCTTGTATCAGA--CTGTCAGAGCCAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCCTGGACCCTGAATTCCTCTATAATTTACCTTTCAAAGT---------TA----AGCATAAATACTCATTCTCAGTAAACAGATCTGTAACAA-CT---------TGCGAAAAAAAATG----AATAATTCAATT--AGTTTCT-GCAATATGCGCATCGGAAAAAA----ATATGGAATGATATTTGACTCTTAAACTAACTTCAAAAGTGACTGG--AGTGTGACATCATTTG-CTGTATC---CATTCCCGACAAGGACCTGATCAGCT---GATT--GTTACATTA-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTATTCGGGCTAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--ATCTTGTAATTGGGGCAGCAGGGCGCATTTAAACA-AAGAAGGGCGGCGTTT-TTAGGGCAGAAGGGCGGAGTCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACC
gi|1 : atcaAATCTCGGCTGATTTNNNN---NNNNNN---NNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAGGATA----GG--G-------ATCAAACTGGCAAGCAA--ATACAGT-GT--GACCT-TTA--GTGATTT---ATGTAAACAGTATAC-CT-A-AAATTAAG-AC-AAATCTACATATCTTGTATCAGA--CTGTCAGAGCGAAGTCGAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGATCCTGAATTCCTCTATATTTTACCTTTCAAAGTCAT--ATAGTATTTAAGCATTAAAGCTAATTCTCAGTAAACAGATCTGTAACAA-CT---------TGCGAAAAA-AATG----AATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA----ACATAGAATGATATCTGACTCTTAAACTAGCTTCAAAAAGGACTGG--AGTGTGACGTCATTTG-CTGTATC---CACACCCGACAAGGACCTGATCAGCC---GATT--GTTACATTA-TTTAGCAAGAGAAGGGCTGGCGAATACCTGTGTATTCGGGCTAAGCGTGTCATATCAGTAAACTATTGGCACATGTTTAACACATGT-------------GATTGACAGTATATTTGTT----T--ATAC--GTCTTGTAATTGGGGCAGCAGGGCGCATTTAAACA-AAGAAGGGCAGCGGTT-TTAGGGCAGAAGGGCGGAGTCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCACTCTAGAAAAAc
gi|22 : atcaAATCTCGGCTGATTTTGACCGTAGGGAA---AACACAGCT-----TGATGTCGATTAA
gi|6 : TCTTGGCTGATTTTGACCGGAGAGAA---AACACAGCT-----TGATGCCGATTAATCTGATAAATAATGTGATAGTTAATTG---TTTATAGGGATA----GA--G-------ATCAAACTGGCAAGCCA--ATACAGT-GT--GACCT-TTA--GCGACTT---ATGTAAATGGTATAC-TG-A-AAATTAGG-AC-AAGTCTACATAGCTTTT-CCAGG--CTGCCAGAGCGAAGTCTAAAAGTTGAATATAACGACATTTTCACTAGCTTGGACCCTGAATTCCTCTGTGATTTGCCTTTCAAAGTCAT--ATATTA----A-CACAAACGCTTATTCTCAGTAAACATATCTGTAACAA-CT---------T---------AATG----AATAAATCATTT--AGTTTCC-GAAATATGCGCATCAGAAAAA----AACATGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTCACTGG--AGTGTGACGTCATTTG-CTGTATC---CACACACAACAAGGACCTGATTAGCT---GAGT--GTTACAT-A-TTTCGCAAGAGAATGACTGGTGAATACCgtcttaagttaat
gi|11 : CTCTGCTGATTT-GGC---TGGAAGGTTAACATAGTTAACTTTGATGCTAATTAATCTGATAATTGCTTCGTTAATTGATTG---ATTACTGGGATAAAGGGGATG-------GTGAAACTAACAA-------TACTGTTGTTGGACTT-TCA--GATATTTTAGATATGATTA-TATAC-AG-AGAATTTAGG-GCCAAGTTATCTCCGCTTTT-CCAGATCCTG--AGAGTGAAatcggcaaatgcttaacacatgtatgtgattgatagctgatttgtttatatatgacttgtaattggggcagcagggtgcatttaaacaaagaaggatggcatttttagggcagaagggctgagcctaaaaggtgcaggtgctgcgccctttcaatcgactctagaaaaaact
gi|16 : cagggaagaaagcacctaatatttccattagtctatttttaatcattttggaaaatccgctttttttaagtcaagtgataTGACTTTGACCGGAGGGAA---AACACAGCT-----AAATGCCA--TAATCAGATAATTGCTGTGTTAATTGATTG---TTTATAGGGATA----AG--GGGGAGGCGTCAAACTGGCAAGCCATTGTACAGT-GT--GACTT-TTA--GCAATTTC--ATGTCAAttgcagaaatt
gi|15 : tcttggtTTTGACCGGAGAGAA---AACACAGCT-----TGATGCCGATTTATCCGATAAATGATGTGTTAGTCGATTG---TTTATAGGGATA----GG--G-------ATAAAACTGGCTAGCCA--ATACAGT-GT--GACCTATATAAACGACTT---ATGTGAACGGTATAC-TG-A-AAATTAGG-AC-AAGTCT--A----------CAGA--CTGCCAGAGCGATGTCTAAAAGTTGAATATAACGAAATTTTC
gi|7 : TA----GG--G-------ATCAAACTGGCAAGCCA--ATACAGT-GT--GACCT-TTA--GCAACTT---ATGTAAACAGTATAA-TG-A-AAATTAAG-AC-AAATCTACATATCTTATATCATT--TCGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAACTG-GACCCTGAATTCCTTTATAATTTACCTTTCAAAGTCAT--ATAGTATTTAAGCATCAACGCTTATTCTCAGTAAACAGATCTGTAACAA-CT---------TGCGAAAAAAAATG----AATAATTCATTTTAGGTTTCC-GCAATATGCACATCGGAAAAAA----ACATGGAATGATATTTGGTTCTTAAACTAACTTCAAATGTGACTGG--AGTGTGACGTCATTTG-CTGTATC---CGCACCCAACAAGGACCTGATCAGCC---GATT--GTTACAT-AATTTTGCAAGAGAAGAACTGGCGAATACCTGTGTATTCGGGCTAAGCGTGCCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGACTTGTT----T--ATAC--GTCTTGTAATTGGGGCAGCAGGGCGCATTTCAACA-AA---GGGCGGCGTTT-TTAGAGCAGAAGGGCGGAGTCTAAAAGGGGCAAGGCCCTGCGCCCTTTCATTCCGCTCTAGAAAAAA
gi|5 : tataatgTCAAACTGGCAAGCCA--ATACAGT-GT--GACCT-TTT--GTGACTT---ATACAAACAGTATAC-TG-A-AAATTAGG-AC-AAGTCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAGAAGTTGAATATGACAACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCA--GTCATTTATAGTA----AGCACAAATGCTAATTCTCAGTAAAGAGA-----------------------------------------ATAATTACTTT--AGTTTCT-GCAATATGCACATCAGAAAAAA---------------------ACCCTTAAACTAACTTTAAAAGTGACTGG--AGTGTGATGTCATTTG-CTGTATC---CACACGCAACAAGGACCTGATCAGCT---GATT--CTTACAT-A-TTTAGCAAGAGAATGACTGGGGAATACCTGTGTATTCGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGCA---------TGTGATTGACAGTTGATTTGTTTATAT--ATAC--GACTTGTTACTGGGGTAGCAGGGCACATTTAAACA-AAGAAGGGCAGCGTTT-TTAGGGCTGAAGGGCGGAGCCTAAAAGGGGCAGGGCACTGCACCCTTTCATTCTGCACTAGAAAAAacc
gi|4 : atcaaatctcgtctgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaTACAGT-GT--GACCT-TTA--GCGACTT---ATGTAAACGGTATAC-TG-A-AAATCAGG-A----GTCTACATAGCTTTT-AAAGA--CTGTCAGAGCAATGTCTCAAAGTTGAATATGATGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCACAAATGCTAATTCTCAGTAAACAGATCTGTAACAA-CTTGCGAAAAAT---------AATG----AACAATTCATTT--AGTTTCT-GAAATTGGCGTATCGGAAAAA----AACATGGAATGATATTTGACCCTTAAATTAACTTCAAAAGTGACTGG--AGTGTGACATCATTTG-CTGTATC---CACATGGGACAAGGAC---------------CT--GTTAAAT-A-TTTAGAAAGAGAATGGCTGGTAAATACCTGTGTATTTGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACAAATGTA---------TGTGATTGACAGTGAATTTGTTTA--T--ATAC--GACTTGTAATTGGAGCAGCAGGGCATATTTAAACA-ACGAAGGGCAGCGTTT-TTAGAGCAGAAGGGCAGAGCCTAAAA-GGGTAGGGCGCTGCGCCCTTTCATTCAGCTCTAGAAAAAAcc
gi|8 : caaatcctggctgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTACAGT-GT--GACCT-TT---ACAACTTT--ATGTAAACA---TAC-TG-C-AATTTAGG-AC-TAGTCTACATAGCTTTT-CCAGA--CTGTCAAAGCGAAG------AGTTAAATACGACGGCATTTTCACTAGCTTGGACCCTG----------CAATTTACCTTTTAAAGTCAT--GTAGTT----AGCATAAACACTTATTTTCATCAAACATATCTGTAACAAACTGTGAAAAA-T---------AATG----AATAATTTATTT--AGTTTCCCGCAATATGCGCATCAGAAAAAAAACAACATGGAACGATATTTGACCCTTACACCAACTTCAAAAGAGACTGA--AATGTGACGTCATT-G-CTGTATC---CACACCCGACAAAGACTTGATCAGCT---GATT--ATTACAT-A-TTTAGAAAGAAAATGGCTGGCCAATACATGAGTATTC-GGCTAAGCGTGTCATATCGGTAAACTATAGGCAAATGTTTAAAACAC--A---------TGTGATTGACAGTTGATTTGTT----G--ATAC--AACTTGTAATTAGGGCAGCAGGGCGCATTTAAACA-AAGAAAGGCAGCAGTT-TTAGGGCAGAAGGGC-GGGCCTAAAAGGGGCAAAGCACTGTACCCTTTTATTCCTCTCTAGAAAAAAa
gi|18 : TATAC-AGCA-AATTTAAGTAG-AAGTTTACATCGCCTTT-CTAGA--CTGTCAGAGCGAAGTCTAAAAGTTAAATATGGCCAAGTTTTTGCTAGCTTGGACa
gi|9 : cAAGTTAA-TACAATGACATTCTCACTAGCTTGGACCTTAAATTCCTCTGCAATTTAACTTTGAAAGGCAT--GTAGTT----AGCATAAACACTAATT-TCAGTAAACAGATCTGTAACAAACTGCGAAAAA-T---------AATA----AATAATTTAGTT--AGTTTCCCGCAATATGTGCATCCAAAAAAA----ACATGGCATGATATCTGGCCCTTACACTTATTTCAAAAGAAACTGA--AGTGTGATGTCATTTG-CTGTATC---CACATGAGACAAGGACCTGATCAGCT---GATT--CTTACAT-A-TTTAACAAGAGAACGTCTGGTGAATACCTGTGTA-TTCAACCAAGCATGTCATATCTGTAAACTATCGGCAAATGTTTAACAC---------------GTGATTATCATGTGATTTGTT----T--ATAT--GACTTGTAATTTGGGCAGCAGGGTGTGTTTAAACA-AAGAATGGTGGCGTTT-TTAGGGCAAAGGGGT----------------AGGGTGCTGCGCTCTTTCATTTCACTCTAGAAAAAtgcaatatgagccttaaattacacatcaataatcaaa
gi|10 : cttAAATGCTAATTCTCAGTAAACAGATCTGTAACAA-CT---------TGCGAAAAAAAATG----AATAATTCATTT--AGTTTCT-GCAATATGCATATCAGAAAAAA---AACATGGAATGATA------------A-TAACTTCAAAAGTGACTAGAGTGTGTGACGTCATTTG-CTGTATC---CACACCCTACAAGGACCTGATCAGCT---GATT--GTTACATTA-TTTAGCAAGAGAAGGACAAGCGAATACCTGTGTATTCGGGCTAAGCGTGTCATATCAGTAAACTATTGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTAGTT----T--ATAC--GTCTTGTAATTGGGGCAGGAGGGTGCATTTAAACA-AAGAAGGGCAGCGTTT-TTAGGGCAGAAGGGCGGAGTCTAAAAGGGACAGGGCGCTACGCCCTTTCATTCCGCTCTAGAAAAAA
gi|21 : tTATAACGA----------------------AATTTTCGAATAATTCATTT--AGTTTTC-GAAATATGCGCATCGGAAAAAA---AACATGaa
gi|13 : ACTTGTCTGTTTCACTCACATGTAA-AAA---CTGATCAGATAGGGACTTGGATATAT-A-TTTAGCAAGAGAAGGGTTGATCAATACTTGTGTAATT-GGCAAAGCGTGTCATATCGGTAAACTATCGGCAAATGTTTGA-A-ATGAAATTTTGACTTGTGATTGACAGTT-ATTTGTT----T--ATAC--AACTT-------GGATAGCAGATTGCATTTTAACA-AAG
gi|12 : catattttagaacaaaggaaaactaataaaattgttattcagctACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGTGAATACCTGTGTATTCGGGCCAAGTGTGTCATGTCAGTAAACTATCGGCAAATGTTGAACATATGTA---------TGTGATTGACAGTTGATTTGTTTA--T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACA-AAAAAGGGCGGTGTTT-TTAGGGCAG-ACGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCTTTTCATTCCGCTCTAGAAAAAAtaa
gi|14 : aaacaAATACCTGTGTCTTCGGGCTAAGCATGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGAGATTGACAGTTGATTTGTT----G--ATAC--GTCTTGTAATTGGGGCAGCAGGGTGCATTTAAACA-AAGAAGGGCGGCGTTT-TTAGGGCAGTAGGGCGGAGCCTAAAAGGGACAGGGCGCTGCGCCCTTTCATTCCGCTATAGAAAAAACCacc
gi|6 : caACCATCGGCAAATGCTTAACACATGTA---------TGTGATTGATAGCTGATTTGTT----T--ATATATGACTTGTAATTGGGGCAGCAGGGTGCATTTAAACA-AAGAAGGATGGCATTT-TTAGGGCAGAAGGGCTGAGCCTAAAAGGTGCA-GGTGCTGCGCCCTTTCAATCGACTCTAGAAAAAAC
gi|17 : tcttggctgattttgaccggagagaaaacacagcttgatgccgattaatctgataaataatgtgatagttaattgtttatagggatagagatcaaactggcaagccaatacagtgtgacctttagcgacttatgtaaatggtatactgaaaattaggacaagtctacatagcttttccaggctgccagagcgaagtctaaaagttgaatataacgacattttcactagcttggaccctgaattcctctgtgatttgcctttcaaagtcatatattaacacaaacgcttattctcagtaaacatatctgtaacaacttaatgaataaatcatttagtttccgaaatatgcgcatcagaaaaaaacatggaatgatatttgacccttaaactaacttcaaaagtcactggagtgtgacgtcatttgctgtatccacacacaacaaggacctgattagctgagtgttacatatttcgcaagagaatgactggtgaatTTTGTT----TGAATAA--GAGTTGTAATTGGGACAACAGTTTGCTTTTAAACA-AAGAAGGGCAGCGTTT-TTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGTTCTTTCATTCCACTCTAGAAAAAACt
gi|19 : gAATTGGGGCATAAGGGCGCATATAA-TAGAAGCAGAGTGGAGAATATTGGGTTAGA-GAGCAGAGTGAAAAAG-------------CATCCTTCCATTTTGCTCTAGAAAAAACa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): ACTTTATACAGCACATTTAGGGCAAAGTTGACATCGATTTACCAGATCCTGAGAACGAAATGTAGAAC
Unaligned ( gi|23 ): TTAAGGCTAAGTTTTAAGGCTAAGTTTTTGCCA
Alignments
lowQualScore : 11111 111 1111 111 1 1111 1 1 1 111111111 1111
lowQualScore : 1 11111 1 1 1 555 7777 66 3 55 666 333 5 3 55 3 666 0 55 66 8888 1 2 2 2 55 7 3 8 666 55 3 666 2 555 44 0 3 0 3 222222222 3333 33 33 0 2 1
lowQualScore : . ..... . . . ... .... .. . .. ... ... . . .. . ... . .. .. .... . . . . .. . . . ... .. . ... . ... .. . . . . ......... .... .. .. . . .
lowQualScore : 0 11111 2 0 0 666 2222 11 6 00 444 666 5 6 00 6 444 9 00 11 9999 0 5 0 0 00 3 6 8 444 55 6 444 8 888 66 0 3 4 3 333333333 9999 99 99 3 9 6
consensus : AATCTCGGCTGATTTTGACCGGAGGGAAAACACAGCT-----TGATGCCGATTAATCCGATAANTGATGTGTTAGTTGATTGTTTATAGGGATA---GGGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCGACTT---ATGTAAACGGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCATAAACGCTNATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AA-TGAATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA-AACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACGCGACAAGGACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTA-TTCGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACC
Reference ( family-5363 ) : AATCTCGGCTGATTTTGACCGGAGGGAAAACACAGCT-----TGATGCCGATTAATCCGATAANTGNTGTGTTAGTTGATTGTTTATAGGGATA---GGGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCGACTT---ATGTAAACGGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCATAAACGCTNATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AA-TGAATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA-AACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACGCGACAAGGACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTA-TTCGGGCTAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACC
gi|1 : AATCTCGGCTGATTTNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAGGATA---GGGA----TCAAACTGGCAAGCAA--ATACAG-TGT--GACCT---TTAGTGATTT---ATGTAAACAGTATACCTAAAA-TT--AAGA-CAAA---TCTACATATCTTGTATCAGA--CTGTCAGAGCGAAGTCGAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGATCCTGAATTCCTCTATATTTTACCTTTCAAAGTCAT--ATAGTATTTAAGCATTAAAGCTAATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AA-TGAATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA-A-CA---TAGAATGATATCTGACTCTTAAACTAGCTTCAAAAAGGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACCCGACAAGGACCTGATCAGCC---GATT--GTTACATTA-TTTAGCAAGAGAAGGGCTGGCGAATACCTGTGTA-TTCGGGCTAAGCGTGTCATATCAGTAAACTATTGGCACATGTTTAACACATGT-------------GATTGACAGTATATTTGTT----T--ATAC--GTCTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCAGCG-GTTTTAGGGCAGAAGGGCGGAGTCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCACTCTAGAAAAA
gi|10 : atcaTAAATGCTAATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AAATGAATAATTCATTT--AGTTTCT-GCAATATGCATATCAGAAAAAA-AACA---TGGAATGATA------------A-TAACTTCAAAAGTGACTAGAGTGTGTGACGTCATTTG-CTGTATC---CACACCCTACAAGGACCTGATCAGCT---GATT--GTTACATTA-TTTAGCAAGAGAAGGACAAGCGAATACCTGTGTA-TTCGGGCTAAGCGTGTCATATCAGTAAACTATTGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTAGTT----T--ATAC--GTCTTGTAATTGGGGCAGGAGGGTGCATTTAAACAAAGAAGGGCAGCG-TTTTTAGGGCAGAAGGGCGGAGTCTAAAAGGGACAGGGCGCTACGCCCTTTCATTCCGCTCTAGAAAAAA
gi|11 : CTCTGCTGATTT-GGCTGGAAGGTTAACATAGTTAACTTTGATGCTAATTAATCTGATAATTGCTTCGTTAATTGATTGATTACTGGGATAAAGGGGATGG-TGAAACT---AA--CA--ATACTGTTGTTGGACTT---TCAGATATTTTAGATAT-GATTATATACAGAGAATTT--AGGGCCAAGTTATCTCC---GCTTTT-CCAGATCCTG--AGAGTGAATTGCAGAAATTaa
gi|12 : cagggaagaaagcacctaatatttccattagtctatttttaatcattttggaaaatccgctttttttaagtcaagtgataACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGTGAATACCTGTGTA-TTCGGGCCAAGTGTGTCATGTCAGTAAACTATCGGCAAATGTTGAACATATGTA---------TGTGATTGACAGTTGATTTGTTTA--T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAAAAGGGCGGTG-TTTTTAGGGCAG-ACGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCTTTTCATTCCGCTCTAGAAAAAA
gi|13 : aaacaACTTGTCTGTTTCACTCACATGTAAAAA----CTGATCAGATAGGGACTTGGATATAT-A-TTTAGCAAGAGAAGGGTTGATCAATACTTGTGTAATT--GGCAAAGCGTGTCATATCGGTAAACTATCGGCAAATGTTTGA-A-ATGAAATTTTGACTTGTGATTGACAGTT-ATTTGTT----T--ATAC--AACTT-------GGATAGCAGATTGCATTTTAACAAAGacc
gi|14 : catattttagaacaaaggaaaactaataaaattgttattcagctCAAATACCTGTGTC-TTCGGGCTAAGCATGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGAGATTGACAGTTGATTTGTT----G--ATAC--GTCTTGTAATTGGGGCAGCAGGGTGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGTAGGGCGGAGCCTAAAAGGGACAGGGCGCTGCGCCCTTTCATTCCGCTATAGAAAAAACCtaa
gi|15 : TTTGACCGGAGAGAAAACACAGCT-----TGATGCCGATTTATCCGATAAATGATGTGTTAGTCGATTGTTTATAGGGATA---GGGA----TAAAACTGGCTAGCCA--ATACAG-TGT--GACCTATATAAACGACTT---ATGTGAACGGTATACTGAAAA-TT--AGGA-CAAG---TCTA------------CAGA--CTGCCAGAGCGATGTCTAAAAGTTGAATATAACGAAATTTTC
gi|16 : TCTTGGTTGACTTTGACCGGAGGGAAAACACAGCT-----AAATGCCA--TAATCAGATAATTGCTGTGTTAATTGATTGTTTATAGGGATAAGGGGGAGGCGTCAAACTGGCAAGCCATTGTACAG-TGT--GACTT---TTAGCAATTTC--ATGTCAA
gi|17 : TTTGTT----TGAATAA--GAGTTGTAATTGGGACAACAGTTTGCTTTTAAACAAAGAAGGGCAGCG-TTTTTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGTTCTTTCATTCCACTCTAGAAAAAAC
gi|18 : gTATACAGCAAA-TTTAAGTA-GAAG---TTTACATCGCCTTT-CTAGA--CTGTCAGAGCGAAGTCTAAAAGTTAAATATGGCCAAGTTTTTGCTAGCTTGGACa
gi|19 : cTAATTGGGGCATAAGGGCGCATATAATAGAAGCAGAGTGGAGAATATTGGGTTAG-AGAGCAGAGTGAAAAA-------------GCATCCTTCCATTTTGCTCTAGAAAAAACtgcaatatgagccttaaattacacatcaataatcaaa
gi|2 : AATCTCCACTGATTTTGAC---AGGGAAAACACAGCT-----TGATGTTGATTAATCCGATAATTGATGTGTCAGTTGATTGTTTATAGGGATA---GGGG----TCAAACTGGCAAGCAA--GTACAG-TGT--GACCT---TTTGCGACTT---ATGTAAACAGTATACTGAAAT-TT--AGGA-CAAG---TCTTCATAGCTTTT-CCAGA--CTGTCAGAGCAAAGTCTCAAAGTTAAATATGACGACATTGTCAGTAGCTTCGACCCTGAATTCCTCTGCAATTTACCTTTCAAAGTCAT--ATAGTA----AGCACAAACGCTTATTCTCAGTAAACAGATCTGTAACAACTT---------AA-TTAATAATTCATTT--AGTTTCC-GAAATATGCACATCGGAAAAAACAACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTAGTGTGTG--ACGTCATTTG-CTGTATC---CACATGCGACAAAGACCTGATCAGCT---GACT--GTTACAT-A-TTTAGCAAGAGAAGAACCGGTGAATACCTGTGTA-TTTTGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGAAATTGGGGCAGCAGGGCACATTTAAATAAAGATGGGCGGCG-TTTTTAGGGCAGAAGGGTAGAGCCTAAAAGGGGCAGGGTGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACCacta
gi|21 : GAATAATTCATTT--AGTTTTC-GAAATATGCGCATCGGAAAAAA-AACA---TG
gi|22 : tataacgaaattttcAATCTCGGCTGATTTTGACCGTAGGGAAAACACAGCT-----TGATGTCGATTAA
gi|3 : AATCTCGGCTGATTTNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAGGGATA---GG---------------CAAGCAA--ATACAG-TGT--GACCT---TCAGCGACTT---ATGTAAGCAGTATACCTCAAA-TT--AAGA-CAAA---TCTACATATCTTGTATCAGA--CTGTCAGAGCCAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCCTGGACCCTGAATTCCTCTATAATTTACCTTTCAAAGT---------TA----AGCATAAATACTCATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AAATGAATAATTCAATT--AGTTTCT-GCAATATGCGCATCGGAAAAAA-A-TA---TGGAATGATATTTGACTCTTAAACTAACTTCAAAAGTGACTGGAGTGTG--ACATCATTTG-CTGTATC---CATTCCCGACAAGGACCTGATCAGCT---GATT--GTTACATTA-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTA-TTCGGGCTAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--ATCTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGAAGGGCGGAGTCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACCgtcttaagttaat
gi|4 : atcaTACAG-TGT--GACCT---TTAGCGACTT---ATGTAAACGGTATACTGAAAA-TC--AGGA----G---TCTACATAGCTTTT-AAAGA--CTGTCAGAGCAATGTCTCAAAGTTGAATATGATGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCACAAATGCTAATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAATAA-TGAACAATTCATTT--AGTTTCT-GAAATTGGCGTATCGG-AAAAA-AACA---TGGAATGATATTTGACCCTTAAATTAACTTCAAAAGTGACTGGAGTGTG--ACATCATTTG-CTGTATC---CACATGGGACAAGGACC---------------T--GTTAAAT-A-TTTAGAAAGAGAATGGCTGGTAAATACCTGTGTA-TTTGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACAAATGTA---------TGTGATTGACAGTGAATTTGTTTA--T--ATAC--GACTTGTAATTGGAGCAGCAGGGCATATTTAAACAACGAAGGGCAGCG-TTTTTAGAGCAGAAGGGCAGAGCCTAAAA-GGGTAGGGCGCTGCGCCCTTTCATTCAGCTCTAGAAAAAAc
gi|5 : caaatcctggctgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATCTCGTCTGATTTNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTTGTGACTT---ATACAAACAGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAGAAGTTGAATATGACAACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCA--GTCATTTATAGTA----AGCACAAATGCTAATTCTCAGTAA--AGA--------------------------GAATAATTACTTT--AGTTTCT-GCAATATGCACATCAGAAAAAA-A---------------------CCCTTAAACTAACTTTAAAAGTGACTGGAGTGTG--ATGTCATTTG-CTGTATC---CACACGCAACAAGGACCTGATCAGCT---GATT--CTTACAT-A-TTTAGCAAGAGAATGACTGGGGAATACCTGTGTA-TTCGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGCA---------TGTGATTGACAGTTGATTTGTTTATAT--ATAC--GACTTGTTACTGGGGTAGCAGGGCACATTTAAACAAAGAAGGGCAGCG-TTTTTAGGGCTGAAGGGCGGAGCCTAAAAGGGGCAGGGCACTGCACCCTTTCATTCTGCACTAGAAAAAa
gi|6 : atcaTCTTGGCTGATTTTGACCGGAGAGAAAACACAGCT-----TGATGCCGATTAATCTGATAAATAATGTGATAGTTAATTGTTTATAGGGATA---GAGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCGACTT---ATGTAAATGGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGG--CTGCCAGAGCGAAGTCTAAAAGTTGAATATAACGACATTTTCACTAGCTTGGACCCTGAATTCCTCTGTGATTTGCCTTTCAAAGTCAT--ATATTA----A-CACAAACGCTTATTCTCAGTAAACATATCTGTAACAACTT---------AA-TGAATAAATCATTT--AGTTTCC-GAAATATGCGCATCAG-AAAAA-AACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTCACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACACAACAAGGACCTGATTAGCT---GAGT--GTTACAT-A-TTTCGCAAGAGAATGACTGGTGAATACCcc
gi|6 : ACCATCGGCAAATGCTTAACACATGTA---------TGTGATTGATAGCTGATTTGTT----T--ATATATGACTTGTAATTGGGGCAGCAGGGTGCATTTAAACAAAGAAGGATGGCA-TTTTTAGGGCAGAAGGGCTGAGCCTAAAAGGTGCA-GGTGCTGCGCCCTTTCAATCGACTCTAGAAAAAACatcggcaaatgcttaacacatgtatgtgattgatagctgatttgtttatatatgacttgtaattggggcagcagggtgcatttaaacaaagaaggatggcatttttagggcagaagggctgagcctaaaaggtgcaggtgctgcgccctttcaatcgactctagaaaaaact
gi|7 : tcttggctgattttgaccggagagaaaacacagcttgatgccgattaatctgataaataatgtgatagttaattgtttatagggatagagatcaaactggcaagccaatacagtgtgacctttagcgacttatgtaaatggtatactgaaaattaggacaagtctacatagcttttccaggctgccagagcgaagtctaaaagttgaatataacgacattttcactagcttggaccctgaattcctctgtgatttgcctttcaaagtcatatattaacacaaacgcttattctcagtaaacatatctgtaacaacttaatgaataaatcatttagtttccgaaatatgcgcatcagaaaaaaacatggaatgatatttgacccttaaactaacttcaaaagtcactggagtgtgacgtcatttgctgtatccacacacaacaaggacctgattagctgagtgttacatatttcgcaagagaatgactggtgaatTA---GGGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCAACTT---ATGTAAACAGTATAATGAAAA-TT--AAGA-CAAA---TCTACATATCTTATATCATT--TCGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAACT-GGACCCTGAATTCCTTTATAATTTACCTTTCAAAGTCAT--ATAGTATTTAAGCATCAACGCTTATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AAATGAATAATTCATTTTAGGTTTCC-GCAATATGCACATCGGAAAAAA-A-CA---TGGAATGATATTTGGTTCTTAAACTAACTTCAAATGTGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CGCACCCAACAAGGACCTGATCAGCC---GATT--GTTACAT-AATTTTGCAAGAGAAGAACTGGCGAATACCTGTGTA-TTCGGGCTAAGCGTGCCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGACTTGTT----T--ATAC--GTCTTGTAATTGGGGCAGCAGGGCGCATTTCAACA---AAGGGCGGCG-TTTTTAGAGCAGAAGGGCGGAGTCTAAAAGGGGCAAGGCCCTGCGCCCTTTCATTCCGCTCTAGAAAAAAt
gi|8 : tataatgTACAG-TGT--GACCT---TTA-CAACTTT--ATGTAAAC---ATACTGCAAT-TT--AGGA-CTAG---TCTACATAGCTTTT-CCAGA--CTGTCAAAGCGAAG------AGTTAAATACGACGGCATTTTCACTAGCTTGGACCCTG----------CAATTTACCTTTTAAAGTCAT--GTAGTT----AGCATAAACACTTATTTTCATCAAACATATCTGTAACAAACTGTGAAAAATAA-TGAATAATTTATTT--AGTTTCCCGCAATATGCGCATCAGAAAAAA-AACAACATGGAACGATATTTGACCCTTACACCAACTTCAAAAGAGACTGAAATGTG--ACGTCATT-G-CTGTATC---CACACCCGACAAAGACTTGATCAGCT---GATT--ATTACAT-A-TTTAGAAAGAAAATGGCTGGCCAATACATGAGTA-TTCGG-CTAAGCGTGTCATATCGGTAAACTATAGGCAAATGTTTAAAACAC--A---------TGTGATTGACAGTTGATTTGTT----G--ATAC--AACTTGTAATTAGGGCAGCAGGGCGCATTTAAACAAAGAAAGGCAGCA-GTTTTAGGGCAGAAGGGCGG-GCCTAAAAGGGGCAAAGCACTGTACCCTTTTATTCCTCTCTAGAAAAAAacc
gi|9 : AAGTT-AATACAATGACATTCTCACTAGCTTGGACCTTAAATTCCTCTGCAATTTAACTTTGAAAGGCAT--GTAGTT----AGCATAAACACTAATT-TCAGTAAACAGATCTGTAACAAACTGCGAAAAATAA-TAAATAATTTAGTT--AGTTTCCCGCAATATGTGCATCC-AAAAAA-AACA---TGGCATGATATCTGGCCCTTACACTTATTTCAAAAGAAACTGAAGTGTG--ATGTCATTTG-CTGTATC---CACATGAGACAAGGACCTGATCAGCT---GATT--CTTACAT-A-TTTAACAAGAGAACGTCTGGTGAATACCTGTGTA-TTCAA-CCAAGCATGTCATATCTGTAAACTATCGGCAAATGTTTAACAC---------------GTGATTATCATGTGATTTGTT----T--ATAT--GACTTGTAATTTGGGCAGCAGGGTGTGTTTAAACAAAGAATGGTGGCG-TTTTTAGGGCA----------------AAGGGGTAGGGTGCTGCGCTCTTTCATTTCACTCTAGAAAAAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ACTTTATACAGCACATTTAGGGCAAAGTTGACATCGATTTACCAGATCCTGAGAACGAAATGTAGAAC
Unaligned ( gi|23 ): TTAAGGCTAAGTTTTAAGGCTAAGTTTTTGCCA
Alignments
lowQualScore : 11111 111 1111 111 1 1111 1 1 1 111111111 1111
lowQualScore : 1 11111 1 1 0 555 7777 66 3 55 666 333 5 3 55 3 666 0 55 66 8888 1 2 2 2 55 7 3 8 666 55 3 666 2 555 44 0 3 0 3 0 222222222 3333 33 33 0 2 1
lowQualScore : . ..... . . . ... .... .. . .. ... ... . . .. . ... . .. .. .... . . . . .. . . . ... .. . ... . ... .. . . . . . ......... .... .. .. . . .
lowQualScore : 0 11111 2 0 8 666 2222 11 6 00 444 666 5 6 00 6 444 9 00 11 9999 0 5 0 0 00 3 6 8 444 55 6 444 8 888 66 0 3 4 3 1 333333333 9999 99 99 3 9 6
consensus : AATCTCGGCTGATTTTGACCGGAGGGAAAACACAGCT-----TGATGCCGATTAATCCGATAANTGATGTGTTAGTTGATTGTTTATAGGGATA---GGGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCGACTT---ATGTAAACGGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCATAAACGCTNATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AA-TGAATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA-AACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACGCGACAAGGACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTA-TTCGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACC
Reference ( family-5363 ) : AATCTCGGCTGATTTTGACCGGAGGGAAAACACAGCT-----TGATGCCGATTAATCCGATAANTGATGTGTTAGTTGATTGTTTATAGGGATA---GGGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCGACTT---ATGTAAACGGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCATAAACGCTNATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AA-TGAATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA-AACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACGCGACAAGGACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTA-TTCGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACC
gi|1 : AATCTCGGCTGATTTNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAGGATA---GGGA----TCAAACTGGCAAGCAA--ATACAG-TGT--GACCT---TTAGTGATTT---ATGTAAACAGTATACCTAAAA-TT--AAGA-CAAA---TCTACATATCTTGTATCAGA--CTGTCAGAGCGAAGTCGAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGATCCTGAATTCCTCTATATTTTACCTTTCAAAGTCAT--ATAGTATTTAAGCATTAAAGCTAATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AA-TGAATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA-A-CA---TAGAATGATATCTGACTCTTAAACTAGCTTCAAAAAGGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACCCGACAAGGACCTGATCAGCC---GATT--GTTACATTA-TTTAGCAAGAGAAGGGCTGGCGAATACCTGTGTA-TTCGGGCTAAGCGTGTCATATCAGTAAACTATTGGCACATGTTTAACACATGT-------------GATTGACAGTATATTTGTT----T--ATAC--GTCTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCAGCG-GTTTTAGGGCAGAAGGGCGGAGTCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCACTCTAGAAAAA
gi|10 : atcaTAAATGCTAATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AAATGAATAATTCATTT--AGTTTCT-GCAATATGCATATCAGAAAAAA-AACA---TGGAATGATA------------A-TAACTTCAAAAGTGACTAGAGTGTGTGACGTCATTTG-CTGTATC---CACACCCTACAAGGACCTGATCAGCT---GATT--GTTACATTA-TTTAGCAAGAGAAGGACAAGCGAATACCTGTGTA-TTCGGGCTAAGCGTGTCATATCAGTAAACTATTGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTAGTT----T--ATAC--GTCTTGTAATTGGGGCAGGAGGGTGCATTTAAACAAAGAAGGGCAGCG-TTTTTAGGGCAGAAGGGCGGAGTCTAAAAGGGACAGGGCGCTACGCCCTTTCATTCCGCTCTAGAAAAAA
gi|11 : CTCTGCTGATTT-GGCTGGAAGGTTAACATAGTTAACTTTGATGCTAATTAATCTGATAATTGCTTCGTTAATTGATTGATTACTGGGATAAAGGGGATGG-TGAAACT---AA--CA--ATACTGTTGTTGGACTT---TCAGATATTTTAGATAT-GATTATATACAGAGAATTT--AGGGCCAAGTTATCTCC---GCTTTT-CCAGATCCTG--AGAGTGAATTGCAGAAATTaa
gi|12 : cagggaagaaagcacctaatatttccattagtctatttttaatcattttggaaaatccgctttttttaagtcaagtgataACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGTGAATACCTGTGTA-TTCGGGCCAAGTGTGTCATGTCAGTAAACTATCGGCAAATGTTGAACATATGTA---------TGTGATTGACAGTTGATTTGTTTA--T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAAAAGGGCGGTG-TTTTTAGGGCAG-ACGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCTTTTCATTCCGCTCTAGAAAAAA
gi|13 : aaacaACTTGTCTGTTTCACTCACATGTAAAAA----CTGATCAGATAGGGACTTGGATATAT-A-TTTAGCAAGAGAAGGGTTGATCAATACTTGTGTAATT--GGCAAAGCGTGTCATATCGGTAAACTATCGGCAAATGTTTGA-A-ATGAAATTTTGACTTGTGATTGACAGTT-ATTTGTT----T--ATAC--AACTT-------GGATAGCAGATTGCATTTTAACAAAGacc
gi|14 : catattttagaacaaaggaaaactaataaaattgttattcagctCAAATACCTGTGTC-TTCGGGCTAAGCATGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGAGATTGACAGTTGATTTGTT----G--ATAC--GTCTTGTAATTGGGGCAGCAGGGTGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGTAGGGCGGAGCCTAAAAGGGACAGGGCGCTGCGCCCTTTCATTCCGCTATAGAAAAAACCtaa
gi|15 : TTTGACCGGAGAGAAAACACAGCT-----TGATGCCGATTTATCCGATAAATGATGTGTTAGTCGATTGTTTATAGGGATA---GGGA----TAAAACTGGCTAGCCA--ATACAG-TGT--GACCTATATAAACGACTT---ATGTGAACGGTATACTGAAAA-TT--AGGA-CAAG---TCTA------------CAGA--CTGCCAGAGCGATGTCTAAAAGTTGAATATAACGAAATTTTC
gi|16 : TCTTGGTTGACTTTGACCGGAGGGAAAACACAGCT-----AAATGCCA--TAATCAGATAATTGCTGTGTTAATTGATTGTTTATAGGGATAAGGGGGAGGCGTCAAACTGGCAAGCCATTGTACAG-TGT--GACTT---TTAGCAATTTC--ATGTCAA
gi|17 : TTTGTT----TGAATAA--GAGTTGTAATTGGGACAACAGTTTGCTTTTAAACAAAGAAGGGCAGCG-TTTTTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGTTCTTTCATTCCACTCTAGAAAAAAC
gi|18 : gTATACAGCAAA-TTTAAGTA-GAAG---TTTACATCGCCTTT-CTAGA--CTGTCAGAGCGAAGTCTAAAAGTTAAATATGGCCAAGTTTTTGCTAGCTTGGACa
gi|19 : cTAATTGGGGCATAAGGGCGCATATAATAGAAGCAGAGTGGAGAATATTGGGTTAG-AGAGCAGAGTGAAAAA-------------GCATCCTTCCATTTTGCTCTAGAAAAAACtgcaatatgagccttaaattacacatcaataatcaaa
gi|2 : AATCTCCACTGATTTTGAC---AGGGAAAACACAGCT-----TGATGTTGATTAATCCGATAATTGATGTGTCAGTTGATTGTTTATAGGGATA---GGGG----TCAAACTGGCAAGCAA--GTACAG-TGT--GACCT---TTTGCGACTT---ATGTAAACAGTATACTGAAAT-TT--AGGA-CAAG---TCTTCATAGCTTTT-CCAGA--CTGTCAGAGCAAAGTCTCAAAGTTAAATATGACGACATTGTCAGTAGCTTCGACCCTGAATTCCTCTGCAATTTACCTTTCAAAGTCAT--ATAGTA----AGCACAAACGCTTATTCTCAGTAAACAGATCTGTAACAACTT---------AA-TTAATAATTCATTT--AGTTTCC-GAAATATGCACATCGGAAAAAACAACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTAGTGTGTG--ACGTCATTTG-CTGTATC---CACATGCGACAAAGACCTGATCAGCT---GACT--GTTACAT-A-TTTAGCAAGAGAAGAACCGGTGAATACCTGTGTA-TTTTGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGAAATTGGGGCAGCAGGGCACATTTAAATAAAGATGGGCGGCG-TTTTTAGGGCAGAAGGGTAGAGCCTAAAAGGGGCAGGGTGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACCacta
gi|21 : GAATAATTCATTT--AGTTTTC-GAAATATGCGCATCGGAAAAAA-AACA---TG
gi|22 : tataacgaaattttcAATCTCGGCTGATTTTGACCGTAGGGAAAACACAGCT-----TGATGTCGATTAA
gi|3 : AATCTCGGCTGATTTNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAGGGATA---GG---------------CAAGCAA--ATACAG-TGT--GACCT---TCAGCGACTT---ATGTAAGCAGTATACCTCAAA-TT--AAGA-CAAA---TCTACATATCTTGTATCAGA--CTGTCAGAGCCAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCCTGGACCCTGAATTCCTCTATAATTTACCTTTCAAAGT---------TA----AGCATAAATACTCATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AAATGAATAATTCAATT--AGTTTCT-GCAATATGCGCATCGGAAAAAA-A-TA---TGGAATGATATTTGACTCTTAAACTAACTTCAAAAGTGACTGGAGTGTG--ACATCATTTG-CTGTATC---CATTCCCGACAAGGACCTGATCAGCT---GATT--GTTACATTA-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTA-TTCGGGCTAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--ATCTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGAAGGGCGGAGTCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACCgtcttaagttaat
gi|4 : atcaTACAG-TGT--GACCT---TTAGCGACTT---ATGTAAACGGTATACTGAAAA-TC--AGGA----G---TCTACATAGCTTTT-AAAGA--CTGTCAGAGCAATGTCTCAAAGTTGAATATGATGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCACAAATGCTAATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAATAA-TGAACAATTCATTT--AGTTTCT-GAAATTGGCGTATCGG-AAAAA-AACA---TGGAATGATATTTGACCCTTAAATTAACTTCAAAAGTGACTGGAGTGTG--ACATCATTTG-CTGTATC---CACATGGGACAAGGACC---------------T--GTTAAAT-A-TTTAGAAAGAGAATGGCTGGTAAATACCTGTGTA-TTTGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACAAATGTA---------TGTGATTGACAGTGAATTTGTTTA--T--ATAC--GACTTGTAATTGGAGCAGCAGGGCATATTTAAACAACGAAGGGCAGCG-TTTTTAGAGCAGAAGGGCAGAGCCTAAAA-GGGTAGGGCGCTGCGCCCTTTCATTCAGCTCTAGAAAAAAc
gi|5 : caaatcctggctgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATCTCGTCTGATTTNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTTGTGACTT---ATACAAACAGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAGAAGTTGAATATGACAACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCA--GTCATTTATAGTA----AGCACAAATGCTAATTCTCAGTAA--AGA--------------------------GAATAATTACTTT--AGTTTCT-GCAATATGCACATCAGAAAAAA-A---------------------CCCTTAAACTAACTTTAAAAGTGACTGGAGTGTG--ATGTCATTTG-CTGTATC---CACACGCAACAAGGACCTGATCAGCT---GATT--CTTACAT-A-TTTAGCAAGAGAATGACTGGGGAATACCTGTGTA-TTCGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGCA---------TGTGATTGACAGTTGATTTGTTTATAT--ATAC--GACTTGTTACTGGGGTAGCAGGGCACATTTAAACAAAGAAGGGCAGCG-TTTTTAGGGCTGAAGGGCGGAGCCTAAAAGGGGCAGGGCACTGCACCCTTTCATTCTGCACTAGAAAAAa
gi|6 : atcaTCTTGGCTGATTTTGACCGGAGAGAAAACACAGCT-----TGATGCCGATTAATCTGATAAATAATGTGATAGTTAATTGTTTATAGGGATA---GAGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCGACTT---ATGTAAATGGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGG--CTGCCAGAGCGAAGTCTAAAAGTTGAATATAACGACATTTTCACTAGCTTGGACCCTGAATTCCTCTGTGATTTGCCTTTCAAAGTCAT--ATATTA----A-CACAAACGCTTATTCTCAGTAAACATATCTGTAACAACTT---------AA-TGAATAAATCATTT--AGTTTCC-GAAATATGCGCATCAG-AAAAA-AACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTCACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACACAACAAGGACCTGATTAGCT---GAGT--GTTACAT-A-TTTCGCAAGAGAATGACTGGTGAATACCcc
gi|6 : ACCATCGGCAAATGCTTAACACATGTA---------TGTGATTGATAGCTGATTTGTT----T--ATATATGACTTGTAATTGGGGCAGCAGGGTGCATTTAAACAAAGAAGGATGGCA-TTTTTAGGGCAGAAGGGCTGAGCCTAAAAGGTGCA-GGTGCTGCGCCCTTTCAATCGACTCTAGAAAAAACatcggcaaatgcttaacacatgtatgtgattgatagctgatttgtttatatatgacttgtaattggggcagcagggtgcatttaaacaaagaaggatggcatttttagggcagaagggctgagcctaaaaggtgcaggtgctgcgccctttcaatcgactctagaaaaaact
gi|7 : tcttggctgattttgaccggagagaaaacacagcttgatgccgattaatctgataaataatgtgatagttaattgtttatagggatagagatcaaactggcaagccaatacagtgtgacctttagcgacttatgtaaatggtatactgaaaattaggacaagtctacatagcttttccaggctgccagagcgaagtctaaaagttgaatataacgacattttcactagcttggaccctgaattcctctgtgatttgcctttcaaagtcatatattaacacaaacgcttattctcagtaaacatatctgtaacaacttaatgaataaatcatttagtttccgaaatatgcgcatcagaaaaaaacatggaatgatatttgacccttaaactaacttcaaaagtcactggagtgtgacgtcatttgctgtatccacacacaacaaggacctgattagctgagtgttacatatttcgcaagagaatgactggtgaatTA---GGGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCAACTT---ATGTAAACAGTATAATGAAAA-TT--AAGA-CAAA---TCTACATATCTTATATCATT--TCGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAACT-GGACCCTGAATTCCTTTATAATTTACCTTTCAAAGTCAT--ATAGTATTTAAGCATCAACGCTTATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AAATGAATAATTCATTTTAGGTTTCC-GCAATATGCACATCGGAAAAAA-A-CA---TGGAATGATATTTGGTTCTTAAACTAACTTCAAATGTGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CGCACCCAACAAGGACCTGATCAGCC---GATT--GTTACAT-AATTTTGCAAGAGAAGAACTGGCGAATACCTGTGTA-TTCGGGCTAAGCGTGCCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGACTTGTT----T--ATAC--GTCTTGTAATTGGGGCAGCAGGGCGCATTTCAACA---AAGGGCGGCG-TTTTTAGAGCAGAAGGGCGGAGTCTAAAAGGGGCAAGGCCCTGCGCCCTTTCATTCCGCTCTAGAAAAAAt
gi|8 : tataatgTACAG-TGT--GACCT---TTA-CAACTTT--ATGTAAAC---ATACTGCAAT-TT--AGGA-CTAG---TCTACATAGCTTTT-CCAGA--CTGTCAAAGCGAAG------AGTTAAATACGACGGCATTTTCACTAGCTTGGACCCTG----------CAATTTACCTTTTAAAGTCAT--GTAGTT----AGCATAAACACTTATTTTCATCAAACATATCTGTAACAAACTGTGAAAAATAA-TGAATAATTTATTT--AGTTTCCCGCAATATGCGCATCAGAAAAAA-AACAACATGGAACGATATTTGACCCTTACACCAACTTCAAAAGAGACTGAAATGTG--ACGTCATT-G-CTGTATC---CACACCCGACAAAGACTTGATCAGCT---GATT--ATTACAT-A-TTTAGAAAGAAAATGGCTGGCCAATACATGAGTA-TTCGG-CTAAGCGTGTCATATCGGTAAACTATAGGCAAATGTTTAAAACAC--A---------TGTGATTGACAGTTGATTTGTT----G--ATAC--AACTTGTAATTAGGGCAGCAGGGCGCATTTAAACAAAGAAAGGCAGCA-GTTTTAGGGCAGAAGGGCGG-GCCTAAAAGGGGCAAAGCACTGTACCCTTTTATTCCTCTCTAGAAAAAAacc
gi|9 : AAGTT-AATACAATGACATTCTCACTAGCTTGGACCTTAAATTCCTCTGCAATTTAACTTTGAAAGGCAT--GTAGTT----AGCATAAACACTAATT-TCAGTAAACAGATCTGTAACAAACTGCGAAAAATAA-TAAATAATTTAGTT--AGTTTCCCGCAATATGTGCATCC-AAAAAA-AACA---TGGCATGATATCTGGCCCTTACACTTATTTCAAAAGAAACTGAAGTGTG--ATGTCATTTG-CTGTATC---CACATGAGACAAGGACCTGATCAGCT---GATT--CTTACAT-A-TTTAACAAGAGAACGTCTGGTGAATACCTGTGTA-TTCAA-CCAAGCATGTCATATCTGTAAACTATCGGCAAATGTTTAACAC---------------GTGATTATCATGTGATTTGTT----T--ATAT--GACTTGTAATTTGGGCAGCAGGGTGTGTTTAAACAAAGAATGGTGGCG-TTTTTAGGGCA----------------AAGGGGTAGGGTGCTGCGCTCTTTCATTTCACTCTAGAAAAAa
blockSeqs : T AACTT T T AAG GGCG TT T TG ATA TAG T T TA C TTA A TC TT TTTA A G T A TA C C A ACA TG T ACT C AGG TG T A A ATTTTGACT TATA GA AT A A
blockSeqs : C . C A AGG TGG . . . . C G . . . . A . . . T G T A . C . A . . . . G . . T . . . TA . . . T
blockSeqs : C . A T . . . . . . T A . . . . . . . . C G T A . . . A . . . . G . . . . . . TA . . . A
blockSeqs : C . C T . . . . . . . A . . . . . . . . A G . . . . . A . . . . C . . . . . . . . . . A
blockSeqs : N . N N . . . . . . . G . . . . . . . . A G . . . . . A . . . . G . . . . . . . . . . A
blockSeqs : N . N N . . . . . . . A . . . . . . . . T G . . . . . A . . . . G . . . . . . . . . . A
blockSeqs : C . T A . . . . . . . G . . . . . . . . T . . . . . . A . . . . A . . . . . . . . . . A
blockSeqs : . . . . . . . . . A . . . . . . . . T . . . . . . . . . . . C . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . A . . . . . . . . . . . C . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . . . A
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqCons : ****
originalCons : AATCTCGGCTGATTTTGACCGGAGGGAAAACACAGCT-----TGATGCCGATTAATCCGATAANTGATGTGTTAGTTGATTGTTTATAGGGATA---GGGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCGACTT---ATGTAAACGGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCATAAACGCTNATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AA-TGAATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA-AACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACGCGACAAGGACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTA-TTCGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACC
finalCons : AATCTCGGCTGATTTTGACCGGAGGGAAAACACAGCT-----TGATGCCGATTAATCCGATAANTGATGTGTTAGTTGATTGTTTATAGGGATA---GGGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCGACTT---ATGTAAACGGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCATAAACGCTNATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AA-TGAATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA-AACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACGCGACAAGGACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTA-TTCGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ACTTTATACAGCACATTTAGGGCAAAGTTGACATCGATTTACCAGATCCTGAGAACGAAATGTAGAAC
Unaligned ( gi|23 ): TTAAGGCTAAGTTTTAAGGCTAAGTTTTTGCCA
Alignments
lowQualScore : 11111 111 1111 111 1 1111 1 1 1 111111111 1111
lowQualScore : 1 11111 1 1 0 555 7777 66 3 55 666 333 5 3 55 3 666 0 55 66 8888 1 2 2 2 55 7 3 8 666 55 3 666 2 555 44 0 3 0 3 0 222222222 3333 33 33 0 2 1
lowQualScore : . ..... . . . ... .... .. . .. ... ... . . .. . ... . .. .. .... . . . . .. . . . ... .. . ... . ... .. . . . . . ......... .... .. .. . . .
lowQualScore : 0 11111 2 0 8 666 2222 11 6 00 444 666 5 6 00 6 444 9 00 11 9999 0 5 0 0 00 3 6 8 444 55 6 444 8 888 66 0 3 4 3 1 333333333 9999 99 99 3 9 6
consensus : AATCTCGGCTGATTTTGACCGGAGGGAAAACACAGCT-----TGATGCCGATTAATCCGATAANTGATGTGTTAGTTGATTGTTTATAGGGATA---GGGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCGACTT---ATGTAAACGGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCATAAACGCTNATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AA-TGAATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA-AACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACGCGACAAGGACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTA-TTCGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACC
Reference ( family-5363 ) : AATCTCGGCTGATTTTGACCGGAGGGAAAACACAGCT-----TGATGCCGATTAATCCGATAANTGATGTGTTAGTTGATTGTTTATAGGGATA---GGGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCGACTT---ATGTAAACGGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCATAAACGCTNATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AA-TGAATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA-AACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACGCGACAAGGACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTA-TTCGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACC
gi|1 : AATCTCGGCTGATTTNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAAGGATA---GGGA----TCAAACTGGCAAGCAA--ATACAG-TGT--GACCT---TTAGTGATTT---ATGTAAACAGTATACCTAAAA-TT--AAGA-CAAA---TCTACATATCTTGTATCAGA--CTGTCAGAGCGAAGTCGAAAAGTTGAATATGACGACATTTTCGCTAGCTTGGATCCTGAATTCCTCTATATTTTACCTTTCAAAGTCAT--ATAGTATTTAAGCATTAAAGCTAATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AA-TGAATAATTCATTT--AGTTTCC-GCAATATGCGCATCGGAAAAAA-A-CA---TAGAATGATATCTGACTCTTAAACTAGCTTCAAAAAGGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACCCGACAAGGACCTGATCAGCC---GATT--GTTACATTA-TTTAGCAAGAGAAGGGCTGGCGAATACCTGTGTA-TTCGGGCTAAGCGTGTCATATCAGTAAACTATTGGCACATGTTTAACACATGT-------------GATTGACAGTATATTTGTT----T--ATAC--GTCTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCAGCG-GTTTTAGGGCAGAAGGGCGGAGTCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCACTCTAGAAAAA
gi|10 : atcaTAAATGCTAATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AAATGAATAATTCATTT--AGTTTCT-GCAATATGCATATCAGAAAAAA-AACA---TGGAATGATA------------A-TAACTTCAAAAGTGACTAGAGTGTGTGACGTCATTTG-CTGTATC---CACACCCTACAAGGACCTGATCAGCT---GATT--GTTACATTA-TTTAGCAAGAGAAGGACAAGCGAATACCTGTGTA-TTCGGGCTAAGCGTGTCATATCAGTAAACTATTGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTAGTT----T--ATAC--GTCTTGTAATTGGGGCAGGAGGGTGCATTTAAACAAAGAAGGGCAGCG-TTTTTAGGGCAGAAGGGCGGAGTCTAAAAGGGACAGGGCGCTACGCCCTTTCATTCCGCTCTAGAAAAAA
gi|11 : CTCTGCTGATTT-GGCTGGAAGGTTAACATAGTTAACTTTGATGCTAATTAATCTGATAATTGCTTCGTTAATTGATTGATTACTGGGATAAAGGGGATGG-TGAAACT---AA--CA--ATACTGTTGTTGGACTT---TCAGATATTTTAGATAT-GATTATATACAGAGAATTT--AGGGCCAAGTTATCTCC---GCTTTT-CCAGATCCTG--AGAGTGAATTGCAGAAATTaa
gi|12 : cagggaagaaagcacctaatatttccattagtctatttttaatcattttggaaaatccgctttttttaagtcaagtgataACCTGATCAGCT---GATT--GTTACAT-A-TTTAGCAAGAGAAGGACTGGTGAATACCTGTGTA-TTCGGGCCAAGTGTGTCATGTCAGTAAACTATCGGCAAATGTTGAACATATGTA---------TGTGATTGACAGTTGATTTGTTTA--T--ATAC--GACTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAAAAGGGCGGTG-TTTTTAGGGCAG-ACGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGCCTTTTCATTCCGCTCTAGAAAAAA
gi|13 : aaacaACTTGTCTGTTTCACTCACATGTAAAAA----CTGATCAGATAGGGACTTGGATATAT-A-TTTAGCAAGAGAAGGGTTGATCAATACTTGTGTAATT--GGCAAAGCGTGTCATATCGGTAAACTATCGGCAAATGTTTGA-A-ATGAAATTTTGACTTGTGATTGACAGTT-ATTTGTT----T--ATAC--AACTT-------GGATAGCAGATTGCATTTTAACAAAGacc
gi|14 : catattttagaacaaaggaaaactaataaaattgttattcagctCAAATACCTGTGTC-TTCGGGCTAAGCATGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGAGATTGACAGTTGATTTGTT----G--ATAC--GTCTTGTAATTGGGGCAGCAGGGTGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGTAGGGCGGAGCCTAAAAGGGACAGGGCGCTGCGCCCTTTCATTCCGCTATAGAAAAAACCtaa
gi|15 : TTTGACCGGAGAGAAAACACAGCT-----TGATGCCGATTTATCCGATAAATGATGTGTTAGTCGATTGTTTATAGGGATA---GGGA----TAAAACTGGCTAGCCA--ATACAG-TGT--GACCTATATAAACGACTT---ATGTGAACGGTATACTGAAAA-TT--AGGA-CAAG---TCTA------------CAGA--CTGCCAGAGCGATGTCTAAAAGTTGAATATAACGAAATTTTC
gi|16 : TCTTGGTTGACTTTGACCGGAGGGAAAACACAGCT-----AAATGCCA--TAATCAGATAATTGCTGTGTTAATTGATTGTTTATAGGGATAAGGGGGAGGCGTCAAACTGGCAAGCCATTGTACAG-TGT--GACTT---TTAGCAATTTC--ATGTCAA
gi|17 : TTTGTT----TGAATAA--GAGTTGTAATTGGGACAACAGTTTGCTTTTAAACAAAGAAGGGCAGCG-TTTTTAGGGCAGAAGGGCGGAGCCTAAAAGGGGCAGGGCGCTGCGTTCTTTCATTCCACTCTAGAAAAAAC
gi|18 : gTATACAGCAAA-TTTAAGTA-GAAG---TTTACATCGCCTTT-CTAGA--CTGTCAGAGCGAAGTCTAAAAGTTAAATATGGCCAAGTTTTTGCTAGCTTGGACa
gi|19 : cTAATTGGGGCATAAGGGCGCATATAATAGAAGCAGAGTGGAGAATATTGGGTTAG-AGAGCAGAGTGAAAAA-------------GCATCCTTCCATTTTGCTCTAGAAAAAACtgcaatatgagccttaaattacacatcaataatcaaa
gi|2 : AATCTCCACTGATTTTGAC---AGGGAAAACACAGCT-----TGATGTTGATTAATCCGATAATTGATGTGTCAGTTGATTGTTTATAGGGATA---GGGG----TCAAACTGGCAAGCAA--GTACAG-TGT--GACCT---TTTGCGACTT---ATGTAAACAGTATACTGAAAT-TT--AGGA-CAAG---TCTTCATAGCTTTT-CCAGA--CTGTCAGAGCAAAGTCTCAAAGTTAAATATGACGACATTGTCAGTAGCTTCGACCCTGAATTCCTCTGCAATTTACCTTTCAAAGTCAT--ATAGTA----AGCACAAACGCTTATTCTCAGTAAACAGATCTGTAACAACTT---------AA-TTAATAATTCATTT--AGTTTCC-GAAATATGCACATCGGAAAAAACAACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTGACTAGTGTGTG--ACGTCATTTG-CTGTATC---CACATGCGACAAAGACCTGATCAGCT---GACT--GTTACAT-A-TTTAGCAAGAGAAGAACCGGTGAATACCTGTGTA-TTTTGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--GACTTGAAATTGGGGCAGCAGGGCACATTTAAATAAAGATGGGCGGCG-TTTTTAGGGCAGAAGGGTAGAGCCTAAAAGGGGCAGGGTGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACCacta
gi|21 : GAATAATTCATTT--AGTTTTC-GAAATATGCGCATCGGAAAAAA-AACA---TG
gi|22 : tataacgaaattttcAATCTCGGCTGATTTTGACCGTAGGGAAAACACAGCT-----TGATGTCGATTAA
gi|3 : AATCTCGGCTGATTTNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAGGGATA---GG---------------CAAGCAA--ATACAG-TGT--GACCT---TCAGCGACTT---ATGTAAGCAGTATACCTCAAA-TT--AAGA-CAAA---TCTACATATCTTGTATCAGA--CTGTCAGAGCCAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAGCCTGGACCCTGAATTCCTCTATAATTTACCTTTCAAAGT---------TA----AGCATAAATACTCATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AAATGAATAATTCAATT--AGTTTCT-GCAATATGCGCATCGGAAAAAA-A-TA---TGGAATGATATTTGACTCTTAAACTAACTTCAAAAGTGACTGGAGTGTG--ACATCATTTG-CTGTATC---CATTCCCGACAAGGACCTGATCAGCT---GATT--GTTACATTA-TTTAGCAAGAGAAGGACTGGCGAATACCTGTGTA-TTCGGGCTAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGATTTGTT----T--ATAC--ATCTTGTAATTGGGGCAGCAGGGCGCATTTAAACAAAGAAGGGCGGCG-TTTTTAGGGCAGAAGGGCGGAGTCTAAAAGGGGCAGGGCGCTGCGCCCTTTCATTCCGCTCTAGAAAAAACCgtcttaagttaat
gi|4 : atcaTACAG-TGT--GACCT---TTAGCGACTT---ATGTAAACGGTATACTGAAAA-TC--AGGA----G---TCTACATAGCTTTT-AAAGA--CTGTCAGAGCAATGTCTCAAAGTTGAATATGATGACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCAAAGTCAT--ATAGTA----AGCACAAATGCTAATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAATAA-TGAACAATTCATTT--AGTTTCT-GAAATTGGCGTATCGG-AAAAA-AACA---TGGAATGATATTTGACCCTTAAATTAACTTCAAAAGTGACTGGAGTGTG--ACATCATTTG-CTGTATC---CACATGGGACAAGGACC---------------T--GTTAAAT-A-TTTAGAAAGAGAATGGCTGGTAAATACCTGTGTA-TTTGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACAAATGTA---------TGTGATTGACAGTGAATTTGTTTA--T--ATAC--GACTTGTAATTGGAGCAGCAGGGCATATTTAAACAACGAAGGGCAGCG-TTTTTAGAGCAGAAGGGCAGAGCCTAAAA-GGGTAGGGCGCTGCGCCCTTTCATTCAGCTCTAGAAAAAAc
gi|5 : caaatcctggctgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATCTCGTCTGATTTNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTTGTGACTT---ATACAAACAGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGA--CTGTCAGAGCGAAGTCTAGAAGTTGAATATGACAACATTTTCGCTAGCTTGGACCCTGAATTCCTCTGTAATTTACCTTTCA--GTCATTTATAGTA----AGCACAAATGCTAATTCTCAGTAA--AGA--------------------------GAATAATTACTTT--AGTTTCT-GCAATATGCACATCAGAAAAAA-A---------------------CCCTTAAACTAACTTTAAAAGTGACTGGAGTGTG--ATGTCATTTG-CTGTATC---CACACGCAACAAGGACCTGATCAGCT---GATT--CTTACAT-A-TTTAGCAAGAGAATGACTGGGGAATACCTGTGTA-TTCGGGCCAAGCGTGTCATATCAGTAAACTATCGGCAAATGTTTAACACATGCA---------TGTGATTGACAGTTGATTTGTTTATAT--ATAC--GACTTGTTACTGGGGTAGCAGGGCACATTTAAACAAAGAAGGGCAGCG-TTTTTAGGGCTGAAGGGCGGAGCCTAAAAGGGGCAGGGCACTGCACCCTTTCATTCTGCACTAGAAAAAa
gi|6 : atcaTCTTGGCTGATTTTGACCGGAGAGAAAACACAGCT-----TGATGCCGATTAATCTGATAAATAATGTGATAGTTAATTGTTTATAGGGATA---GAGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCGACTT---ATGTAAATGGTATACTGAAAA-TT--AGGA-CAAG---TCTACATAGCTTTT-CCAGG--CTGCCAGAGCGAAGTCTAAAAGTTGAATATAACGACATTTTCACTAGCTTGGACCCTGAATTCCTCTGTGATTTGCCTTTCAAAGTCAT--ATATTA----A-CACAAACGCTTATTCTCAGTAAACATATCTGTAACAACTT---------AA-TGAATAAATCATTT--AGTTTCC-GAAATATGCGCATCAG-AAAAA-AACA---TGGAATGATATTTGACCCTTAAACTAACTTCAAAAGTCACTGGAGTGTG--ACGTCATTTG-CTGTATC---CACACACAACAAGGACCTGATTAGCT---GAGT--GTTACAT-A-TTTCGCAAGAGAATGACTGGTGAATACCcc
gi|6 : ACCATCGGCAAATGCTTAACACATGTA---------TGTGATTGATAGCTGATTTGTT----T--ATATATGACTTGTAATTGGGGCAGCAGGGTGCATTTAAACAAAGAAGGATGGCA-TTTTTAGGGCAGAAGGGCTGAGCCTAAAAGGTGCA-GGTGCTGCGCCCTTTCAATCGACTCTAGAAAAAACatcggcaaatgcttaacacatgtatgtgattgatagctgatttgtttatatatgacttgtaattggggcagcagggtgcatttaaacaaagaaggatggcatttttagggcagaagggctgagcctaaaaggtgcaggtgctgcgccctttcaatcgactctagaaaaaact
gi|7 : tcttggctgattttgaccggagagaaaacacagcttgatgccgattaatctgataaataatgtgatagttaattgtttatagggatagagatcaaactggcaagccaatacagtgtgacctttagcgacttatgtaaatggtatactgaaaattaggacaagtctacatagcttttccaggctgccagagcgaagtctaaaagttgaatataacgacattttcactagcttggaccctgaattcctctgtgatttgcctttcaaagtcatatattaacacaaacgcttattctcagtaaacatatctgtaacaacttaatgaataaatcatttagtttccgaaatatgcgcatcagaaaaaaacatggaatgatatttgacccttaaactaacttcaaaagtcactggagtgtgacgtcatttgctgtatccacacacaacaaggacctgattagctgagtgttacatatttcgcaagagaatgactggtgaatTA---GGGA----TCAAACTGGCAAGCCA--ATACAG-TGT--GACCT---TTAGCAACTT---ATGTAAACAGTATAATGAAAA-TT--AAGA-CAAA---TCTACATATCTTATATCATT--TCGTCAGAGCGAAGTCTAAAAGTTGAATATGACGACATTTTCGCTAACT-GGACCCTGAATTCCTTTATAATTTACCTTTCAAAGTCAT--ATAGTATTTAAGCATCAACGCTTATTCTCAGTAAACAGATCTGTAACAACTTGCGAAAAA-AAATGAATAATTCATTTTAGGTTTCC-GCAATATGCACATCGGAAAAAA-A-CA---TGGAATGATATTTGGTTCTTAAACTAACTTCAAATGTGACTGGAGTGTG--ACGTCATTTG-CTGTATC---CGCACCCAACAAGGACCTGATCAGCC---GATT--GTTACAT-AATTTTGCAAGAGAAGAACTGGCGAATACCTGTGTA-TTCGGGCTAAGCGTGCCATATCAGTAAACTATCGGCAAATGTTTAACACATGTA---------TGTGATTGACAGTTGACTTGTT----T--ATAC--GTCTTGTAATTGGGGCAGCAGGGCGCATTTCAACA---AAGGGCGGCG-TTTTTAGAGCAGAAGGGCGGAGTCTAAAAGGGGCAAGGCCCTGCGCCCTTTCATTCCGCTCTAGAAAAAAt
gi|8 : tataatgTACAG-TGT--GACCT---TTA-CAACTTT--ATGTAAAC---ATACTGCAAT-TT--AGGA-CTAG---TCTACATAGCTTTT-CCAGA--CTGTCAAAGCGAAG------AGTTAAATACGACGGCATTTTCACTAGCTTGGACCCTG----------CAATTTACCTTTTAAAGTCAT--GTAGTT----AGCATAAACACTTATTTTCATCAAACATATCTGTAACAAACTGTGAAAAATAA-TGAATAATTTATTT--AGTTTCCCGCAATATGCGCATCAGAAAAAA-AACAACATGGAACGATATTTGACCCTTACACCAACTTCAAAAGAGACTGAAATGTG--ACGTCATT-G-CTGTATC---CACACCCGACAAAGACTTGATCAGCT---GATT--ATTACAT-A-TTTAGAAAGAAAATGGCTGGCCAATACATGAGTA-TTCGG-CTAAGCGTGTCATATCGGTAAACTATAGGCAAATGTTTAAAACAC--A---------TGTGATTGACAGTTGATTTGTT----G--ATAC--AACTTGTAATTAGGGCAGCAGGGCGCATTTAAACAAAGAAAGGCAGCA-GTTTTAGGGCAGAAGGGCGG-GCCTAAAAGGGGCAAAGCACTGTACCCTTTTATTCCTCTCTAGAAAAAAacc
gi|9 : AAGTT-AATACAATGACATTCTCACTAGCTTGGACCTTAAATTCCTCTGCAATTTAACTTTGAAAGGCAT--GTAGTT----AGCATAAACACTAATT-TCAGTAAACAGATCTGTAACAAACTGCGAAAAATAA-TAAATAATTTAGTT--AGTTTCCCGCAATATGTGCATCC-AAAAAA-AACA---TGGCATGATATCTGGCCCTTACACTTATTTCAAAAGAAACTGAAGTGTG--ATGTCATTTG-CTGTATC---CACATGAGACAAGGACCTGATCAGCT---GATT--CTTACAT-A-TTTAACAAGAGAACGTCTGGTGAATACCTGTGTA-TTCAA-CCAAGCATGTCATATCTGTAAACTATCGGCAAATGTTTAACAC---------------GTGATTATCATGTGATTTGTT----T--ATAT--GACTTGTAATTTGGGCAGCAGGGTGTGTTTAAACAAAGAATGGTGGCG-TTTTTAGGGCA----------------AAGGGGTAGGGTGCTGCGCTCTTTCATTTCACTCTAGAAAAAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): ACTTTATACAGCACATTTAGGGCAAAGTTGACATCGATTTACCAGATCCTGAGAACGAAATGTAGAAC
Unaligned ( gi|23 ): TTAAGGCTAAGTTTTAAGGCTAAGTTTTTGCCA