lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1111 111111 55555555555555555555555555 111111 11111111111111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 2222222222 222222
lowQualScore : 8 1 4 22 88888 1 33333 5 5555 3333 1 1 1 666666 1 666 1 333 777777 55 55555555555555555555555555 222222 1 7777777 55555 22222222222222 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22 2 3333333333 333 555 111 1 2 2 000000 1 22
lowQualScore : . . . .. ..... . ..... . .... .... . . . ...... . ... . ... ...... .. .......................... ...... . ....... ..... .............. ................................................................................................................................................................................................................. .. . .......... ... ... ... . . . ...... . ..
lowQualScore : 6 3 6 77 33333 1 88888 2 0000 2222 7 7 7 333333 7 777 8 222 222222 00 00000000000000000000000000 777777 9 3333333 33333 44444444444444 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 99 6 3333333333 333 222 999 1 2 4 222222 1 88
consensus : TAAGGCCAAA-TGAAAA-AA--TA--T--TTT-TGTTT-----CCTGTGACATG----CT---GG-AAA-A-AAA-T----T-GGGTCGGTAGGTAGGAA-T---T-N--C-TTTT--TTT----TTC-CC----------------TCCATGGTTC-----ATGGATCG------A-----A--------------AT----G-------G-A---GC-------GA-----------------A-----AG---------A------C---------------A-----A-------------------------T--------T-----------TTT---------------------TT--TTT-A---C------TC--T-----------GGGAT-T----AAAA--TATTGACT------C---GG---TCGN--GTCACA---GG-AAAC-AAAACTA----T-TTTT-T--TCATTTG
Reference ( gi|6 ) : TAAGGCCATA-TGAAAA-AA--TA--T--TTT-TGTTT-----CCTATGACATG----CT---AG-AAA-A-AAA-T----T-GGGTTAGTAGGTAGGAA-T---T-A--C-TTTT--TTTA---TTG-CC----------------TCCATGGTTT-----ATAGATCG------A-----A--------------AT----T-------G-A---GC-------AA-----------------A-----AG---------A------C---------------A-----A-------------------------T--------T-----------TTT---------------------TT--TTT-A---C------TC--T-----------GGAAT-T----AAAA--TAATGACT------G---GG---TCAG--GTCACA---GG-AAAC-AAAACTA----T-TTTT-T--TCATTTG
gi|8 : TAAGGTCAAA-TGAAAA-AA--TA--T--ATT-TGTTT-----ACAACGACATG----CT---GC-GAA-A-AAA-T----T-GGGTTGATAAGTAGGAATT---T-ATTC-TTTT--TTT----CTC-CC----------------TCTATGGTTC-----ATGTATCG------A-----A--------------AT----G-------G-A---GC-------GA-----------------A-----AG---------A------C---------------A-----A-------------------------
gi|14 : TAAGGCAAAA-TAAAAA-AA--AA--TGGTTT-TGTTT-----CCTGTGACaataaaaattcaataattttgttttgacacatgggtttaaatattattttttcagttggcct
gi|13 : ttaatcaaaatgaaaaaatacttttgtctcctgtagcatgctggaaaaaaaatgggatggtagatagtttgtttttttctctccatggttcatggatcaaattgatcaaaaTAAGGCAAAA-TGAAAA-AAA-TAA-T--TTT-TGTTT-----CCTGTGACATG----CT---AG-GAA-A-AAA------T-AGGTCGGAAGGTAGAAA-T---T-A--attgcagctcatct
gi|12 : aaTGAAGCCAAA-TGAATT-AA--T------------TTT-----CCTGCGACATG----CT---GG-AAA-A-AAA-T----T-GGGTCATTAGGTATCAG-T---T-C--C-TTTT--TTT----CTC-TC----------------TCCATGGTTCAAATAATAAA--G------A-----A--------------AA----TAA-----G-A---AC-------AA-----------------AAAAGGAA---------A------C---------------AAAACTA-------------------------T--------T-----------TTT---------------------TC--CTC-A---T------TT--T-----------Gaaaaaaaaattcaataaaacacgggtgtgggggagtgggggttaaatattcaaatattgacttggttgggtcacaggaaacaaaactattttt
gi|37 : tatcTGAGGCCAAA-TGAAAATAA--TA--T--TTG-TGTTT-----CATGTGACATA----CT---ccgcagtaacagttcctat
gi|26 : AAGGCAA-A-TGAAAAAAA--TA--T--TTA-AGTTT-----CCTGTGACATG----CTTA-AA-AAA-A-AAA-C----T-GGGTT----GGTAGGAA-C---T-A--T-TTTT--Tg
gi|5 : AGGCCAAA-TGAAAA-AA--TA--T--TTT-GGTTT-----CTTGTGACGTG----CT---GG-AAA-A-AA-------T-GGGTAGGTAGGTAGGAA-T---G-T--C-TCTT--TTT----TTT-CC----------------TACATGGTTC-----ATGGATTT------G-----A--------------AT----C-------G-A---GC-------AA-----------------A-----AG---------A------C---------------A-----AAAAGAAAAAAGAAAAGAAG------T--------T---------------------------------------TAT-A---C------TC--T-----------GG--T-T----AAAA--CATTGACT------T---GG---TGGT--GTCACA---GG-AAAC-AAAACTA------TTAT-T--TCATTTGc
gi|17 : AGGCCAAA-TGAAAAAAA--TA--T--TTT-TGTCT-----CCTGTGACATG----CT---GGAAAA-A-AAA-A----T-GGGTTGGTAGGTAGGAT-T---T-T--T-TTTT--ATTA---TTATTC----------------TCCATGGGTC-----ATGGATCA------A-----A--------------AT----G-------G-A---GC-------GA-----------------A-----AG---------A------gcc
gi|3 : AGGCCAAA-AGAAAACAA--AA--A--TTT-TGTTT-----CCTGTGACATG----CT---GG-GAA-A-TAA-C------AGGTCGATAGGTAGGAA-A---T-C--C-TTTT--TTT---------------------------TCATGGTCC-----ATCGATCA------A-----A--------------AT----G-------G-A---GC-------AAAAGACAAAAAAAAATTGA-----AA---------A------C---------------A-----A-------------------------T--------CAAATAAAAAAATTG---------------------TT--GT------C------TC--T-----------GGGGT-T----AAAA--CATTAACT------T---GG---TCGA--GTCGCA---GA-AAAC-AAAAATA------TATT-T--TCATTgacaaaaaaaaaataaataaaaa
gi|24 : tAGGCCAAAATGAAAG-AA--TA--T--TTT-TGATT-----CCTGTGACATG----CT----G-AAA-A-AAA-T----T-TGGTCACTAGGTAGGAA-T---T------TCTT--TTTA---TT--TC----------------TTCATAGTTC-----A
gi|7 : tttAGGCCAAA-TGAAAA-AA--TA--TA-TTTGTGTTT-----CCTGTGAAGTG----CT----G-GAA-A-AAA-T----T-TGGTTA------------------A--T-TTTT--TTT----------------------------CATGGTTC-----ATGGATCG------A-----A--------------AT----G-------G-A---GC--------A-----------------A-----AG---------A------CAA-------------A-----A-------------------------TA-------T-----------ATT---------------------TT--TTT-A---a
gi|32 : tAAGTCAAA-TGAAAA-AA--TA--T--ATT-TGTTT-----CCTGTGACATG----CT---GG-ACA-A-AAA-T----T-GGGTCAGTAaaaaatcaaaaaaaaaaaatcaatcaattttttttaacttgtgggttaaaatattgactcacaagaattttttttttt
gi|30 : ttAGGCCAAA-AAAAAA-CA--TT--T--TTT-TGTTT-----CCTGTGACATG----CT---GA-AAA-A-AAT-T----T-GGGTCTGTAGGTAaat
gi|27 : tcAGGCCA-A-TGAAAA-AA--TA--G--TAT-TGTTT-----CCTGTAACATG----a
gi|36 : acaaaagacaaaacaaaattttaaaatattgactttgtAGACCAAA-TGAAAA-AA--CA--G--TTT-TG-TT-----CCTGTGAC
gi|34 : tactgactcggtttgAGGCCAAA-TGAAA------TA--TA-GTT-TGTTT-----CCTATGA
gi|5 : aaaatcacacttggtcggaGGCCAAA-TGAAAT-AA--TA--G--TTT-TGTTT-----CCTGTGACA
gi|4 : aggccaaatgaaaaaatattttggtttcttgtgacgtgctggaaaaaatgggtaggtaggtaggaatgtctcttttttttcctacatggttcatggatttgaatcgagcaaaagacaaaaagaaaaaagaaaagaagtttatactctggttaaaacattgacttggtggGGGCAAA-TGATAA-AA--GA--T--TTT-TGTTTT----CCTGTGGCATG----CT---TG-AAA-A-AAAAC----T-GAGCCAGTAGGTTGGAA-T---T-T--C-TTTT--TT-----TCC-CC----------------TCCACGATTC-----ATGGATGGAATTGAA-----A--------------AT----TGGAGTGAG-A---GA-------AA-----------------A-----AG---------AACT---C---------------A-----A-------------------------TAAAAAAACT-----------TAA---------------------CT--CAT-A----------TC--T---------------T-T-----AAA--TATTGACT------T---GG---TCGG--GTCATA---GG-AAAC-AAAACTA----T-TTTT-T--
gi|10 : GGCCAAA-TGAAAA-AA--TT--G--TTT-TGATT-----CCTGTGACct
gi|9 : aaaaacaaaacaaaaattgtttccaactgcatgccggaaaaaaaattgggtcagtagatagcaggtatttttttcttccatagttcatggatggaaatggaattgaaagggaaaaaaaaacgaaaaaaaaatattcggtcggGGCCAAA-TGAAAA-AA--TA--G--TTT-TGTTC-----CCTGTGAC
gi|16 : attgaaataaaatttgggtcataggtaggaatttcattttaccatggttcttgaattgaaatggagagaaagacaattaaactttaaaaataaaataaacaaaaacttttcgactattgggttaaaatattgacatgatcggGGTCAAA-TGAAAA-AT--TA--T--TTT-TGTTT-----C--------TG----T-------AAA-A-AAA-T----T-GTGTCAGTAGGTAGGTT-T---TCA--T-TTTTA-TTTT---TTG--------------------CCATTGTTC-----ATGGAATG------A-----A--------------AT----G-------G-A---AC-------AA-----------------A-----AG---------A------C---------------
gi|25 : GGCCAAA-TGAAAA-AA--TA--G--TTT-TGTTT-----CCTGTGACtaaaaaaaaaannnnnnnnnntaaccattgtttctaattacatgttcatgg
gi|2 : aatgaaaacatgctgtannnnnnnnnnaaaatacagactcgatcggtcggGTCAAA-CGAAAA-AA--TA--G--TTT-TGTTT-----CTTGTGACCTG----cgagt
gi|1 : ccaaataaaaaaataatttttgtttcctgtgacctgaaggaaaaaaattggacaggcaggttggaatttcttttattttctttctgcggttcatggatcgaaatagagcaaataaaactaaaataaatgttataaataaaaaaaaaatttaatgatttttttttagatttgtgggttctaaaatattgactcagtGCCAAA-TGAAAA-AAAATA--G--TTT-TGTTT-----CCTGTAAC
gi|28 : caaaatgaaaaaatatttttacttttgttcctgtgacatgctgaaaaaaaaaaatagggtctgtaggtaagaatttcttcccctacacccacccaccaaccccctttccatggttcatagatcaaaatggagtggaggacaaaaaaaaaataaaaataaaataaaacttccttttttttaatcggaggttagattattggcttggtagaGCCAAA-TGAAAA-AA--TAAAT--TTT-TGTTT-----CCTGTGACATG----AT---GG-AAA-A-AAA------T-GTGTCAGTAAGTAAAAA-A---T-T--C-TT
gi|11 : CCAGA-TGAAAA-AA--TA--G--TTT-TGTTG-----CCTTTGAC
gi|2 : tgacatgctgaatacaaatttggttggtagataggggtttctattatttttatttttctccatggctcatggttcgaaatggaagctaaagacaaaacgaaaaaaaaaaatttactcgggattaagatattgactaggttggCCAAA-TAAAAA-AA--TAA-T--TTT-TGTTT-----CCTGTGACCTG----AA---GG-AAA-A-AAA-T----T-GGACAGGCAGGTTGGAA-T---T-T--C-TTTTATTTTC---TTT-CTGCGG------------TTCATGGATCGAA--ATAGAGCA------A-----ATAAAACTAAAATAAATGTTAT-------A-A---AT-------AA-----------------A-----AA---------AAAAATTT---------------A-----A-------------------------TGA------T-----------TTT---------------------TT--TTT-AGATT------TG--T-----------GGGTTCT----AAAA--TATTGACT------C---AG---TCAG--GTCACA---AG-AAAC-AAAACTA------TTTT-T--TCGTTTG
gi|3 : A-TGAAAA-TA--TA--T--TTT-TGTTT-----TCTGCGACac
gi|1 : taggccaaaagaaaacaaaaattttgtttcctgtgacatgctgggaaataacaggtcgataggtaggaaatccttttttttcatggtccatcgatcaaaatggagcaaaagacaaaaaaaaattgaaaacaatcaaataaaaaaattgttgtctctggggttaaaacattaacttggtcgaA-TGAAAA-AA--TA--T--TTT-TACTTTTGTTCCTGTGACATG----CTGAAAA-AAA-A-AAA-T----A-GGGTCTGTAGGTAAGAA-T---T-T--C-TTCC--CCTA---CAC-CCACCCACCAACCCCCTTTCCATGGTTC-----ATAGATCA------A-----A--------------AT----G-------G-A---GT-------GG-----------------A-----GG---------A------C---------------A-----AAAAAAAAATAAAAATAAAATAAAACT--------T-----------CCT---------------------TTTTTTT-A---A------TC--G-----------GAGGT-T----AGAT--TATTGGCT------T---GG---TAGA--GTTACA---GG-AAAC-AAAACTAT---T-TTTT-T--TCATTTGt
gi|14 : caaaA-TGAAAA-AA--TA--C--TTT-TGTCT-----CCTGTAGCATG----CT---GG-AAA-A-AAA-A----T-GGGATGGTAGATAG----T---T-T--G-TTTT--TTTC---T----C----------------TCCATGGTTC-----ATGGATC-------A-----A--------------AT----T-------G-A---TC-------AA-----------------A-----AGTCACAGGAAA------C---------------A-----AAACC---------------------A--------T-----------TTT---------------------TT--TTT-A---T------TT--T-----------Ggc
gi|15 : ttaatcaaaA-TGAAAA-AA--TA--G--TTT-TGTTT-----GCTGTGACccttaattgcagctcatct
gi|4 : tgaaaaaaaaaaatatctcggaaaaataagtaagaatttcttttttttcttttttctccatggttcaaaaaatgtagacaaaaattttttaacaaaaattcaataaaaagtttttgactcggatcgggtcaccGAAAA-AA--TA--G--TTT-TGTTT-----CCTATGACCCGA---CC---AA-GTC-A-ATA-T---------TTAA-AGATATGAG-T---TAA--G-TTTT--TTTA---TTG-
gi|22 : gggcaaatgataaaagatttttgttttcctgtggcatgcttgaaaaaaaactgagccagtaggttggaatttctttttttcccctccacgattcatggatggaattgaaaattggagtgagagaaaaagaactGAAAA-AG--TA--T--TTT-CATTT-----C---TGAC-TGGCCCCTG--AA-AAA-A-AAA-T----A-GGGTAAGTAGATA-GAA-T---T-t
gi|13 : AAA-AA--TA--G--TTT-TGTTT-----CCTGTGACccccccgccccccacccccactctccacccaagaacaaatgaccgttagaagactagaaaa
gi|21 : aataaggcaaaatgaaaaaaataatttttgtttcctgtgacatgctaggaaaaaataggtcggaaggtagaaattaaaaaaaaaattcaataaaacacgggtgtgggggagtgggggttaaatattcaaatattgacttggttggAAA-AG--TA--T--TTT-TGTTT-----CCTGTGAC
gi|21 : atttttgtttcctgtgacattctgggtcggtaggaatttcgtgttttttttctctccatggttcataggggggaaggggtggagtcttaaatattgacggA--T--TTT-TGTTT-----CCTGTGACATT----C----------------------T-GGGTC----GGTAGGAA-T---T-T--CGTGTT--TTTT---TTC-TC----------------TCCATGGTTC-----ATAG
gi|10 : T-TGTTT-----CCAACTGCATG----CC---GG-AAA-AAAAA-T----T-GGGTCAGTAGATAGCAG-G---T-A--T-TTTT--TT---------CT----------------TCCATAGTTC-----ATGGATGG------AAATGGA--------------AT----T-------G-AAAGGG-------AA-----------------A-----AA---------A------A---------------A-----A-------------------------C--------------------------------------------------------------------------------GAA-------AAAA--AAAT-ATT------C---GG---TCGG--GTCACA---GG-AATC-AAAAC-A----A-TTTT-T--TCATTTGgggggaaggggtggagtcttaaatattgacgggtcacaggaaacaaaaatactttt
gi|11 : aaaaacaaaacaaaaaTGACATG----CT---GA-ATA-C-AAA-T----T-TGGTTGGTAGATAGGGG-TTTCT-A--T-TATT--TTTAT--TTT-TC----------------TCCATGGCTC-----ATGGTTCG------A-----A--------------AT----G-------GAA---GC-------TA-----------------A-----AG---------A------CAAAACGAAAAAAAAAA-----A--------------------------------------------------------------------------TTT-A---C------TC--------------GGGAT-T----AAGA--TATTGACT------A---GG---TTGG--GTCAAA---GG-CAAC-AAAACTA------TTTT-T--TCATCTGgcc
gi|15 : ---AA-AAA-A-AAA-TATCTC-GGAAAAATAAGTAAGAA-T---T-T--C-TTTT--TTTTCTTTTT-TC----------------TCCATGGTTC-----AAA-----------A-----A--------------ATG---T-------A-G---AC-------AA-----------------A-----AA--------------------------------------------------------------------------------------TT---------------------TT--TTA-A---CAAAAATTC----------------AAT-A----AAAAGTTTTTGACTCGGATCG---GG---TCACC-GTCACA---GC-AAAC-AAAACTA------TTTT-T--TCATg
gi|9 : tgaaG-AAATA-AAA-T----TTGGGTCA-TAGGTAGGAA-T---T------TCAT--TTTA--------------------------CCATGGTTC-----TTGAATTG------A-----A--------------AT----G-------G-A---GA-------GA-----------------A-----AG---------A------C---------------A-----A-------------------------T--------TAAAC-------TTTAAAAATAAAATAAACAAAAACTT--TTCGA---C------TA--T-----------TGGGT-T----AAAA--TATTGACA------T---GA---TCGG--GTCACA---GG-GAAC-AAAACTA------TTTT-T--TCATTTG
gi|35 : attC----------------TCCATGGTTC-----ATGGATCT------A-----A--------------AT----G-------G-A---GC-------GA-----------------A-----AG---------A------C---------------A-----A-------------------------gcc
gi|20 : tC----------------TCCATGTTTT-----ATGTATCG------A-----A--------------AT----G-------G-A---GA-------GA-----------------A-----AG---------A------C---------------A-----A-------------------------aaactatttattc
gi|19 : tC----------------TCCATGTTTT-----ATGTATCG------A-----A--------------AT----G-------G-A---GA-------GA-----------------A-----AG---------A------C---------------A-----A-------------------------ataaaatccaccaaaaaatcaatggtggtggttataacattgcctcaatagggtgacaggaaataatactattgtttcatttggcc
gi|18 : t----------------TCCATAATTC-----ATAGATCC------A-----A--------------AT----A-------G-A---GCGAAAGACAA-----------------A-----AG---------A------G---------------A-----A-------------------------TAAAGAA--TAAAAA------CTT---------------------TT--TAA-A--------------------------AAAAT-TCAATAAAA--CATTGACT------C---TG---TCGG--GTCACA----G-CAAC-AAAACTG------TTTA-T--TCATTTGataaaatccaccaaaaaatcaatggtggtggttataacattgcctcaatagggtgacaggaaataatactattgtttcatttggcc
gi|14 : -----AG---------A------T---------------A-----G-------------------------T--------T-----------TGT---------------------TT--TTT-T---C------TC--TCCATGGTTCATGGA---T----CAAA--T--TGA-----------------TCAAAAGTCACA---GG-AAAC-AAAACCA----T-TTTTTT--TTATTTgccc
gi|12 : ttaatcaaaatgaaaaaatacttttgtctcctgtagcatgctggaaaaaaaatgggatggt-------------------------T--------T-----------TTT---------------------TT--CTC-T---C------TCCAT-----------GG--T-T----CAAA--TAATAA--------A---GAAAATAAG--AACAAAAAAGG-AAAC-AAAACTA----T-TTTT-TCCTCATTTtgccttaattgcagctcatct
gi|25 : tatctgaagccaaatgaattaattttcctgcgacatgctggaaaaaaattgggtcattaggtatcagttccT-A---N------NN--N-----------NNNNN-N----AAAA--TACAGACTC-----GATCGG---TCGG--GTCACA---GG-AAAC-AAAACTA------TTTT-T--TCATTTGtgccgcagtaacagttcctat
gi|21 : aatgaaaacatgctg--T-----------GGAGTCT----TAAA--TATTGAC------------------GG--GTCACA---GG-AAAC-AAAAATA----C-TTTT-gcccgagt
gi|31 : atttttgtttcctgtgacattctgggtcggtaggaatttcgtgttttttttctctccatggttcataggggggaaggggGAAT------AAAA--TATTGACT------T---GG---TT-G--GTTTCA---GG-AAAC------TA----T-TTAT-T--TCATTTG
gi|13 : ttccgtaactgtcaAT-T----CAAA--TATTGACT------T---GG---TTGG--GTCACA---GG-AAAC-AAAACTA----T-TTTT-gcct
gi|27 : aataaggcaaaatgaaaaaaataatttttgtttcctgtgacatgctaggaaaaaataggtcggaaggtagaaattaaaaaaaaaattcaataaaacacgggtgtgggggagtgggggttaaatT-T----AAAA--TATTGACT------T---TG---TCAT--GTTACA---GG-AAAC-AATACTA------TTTT-T--TCATT
gi|34 : acaaaagacaaaacaaaatt----AAAA--TCAC-ACT------T---GG---TCGG--ATCATA---GG-AAAC--AAACTA-------TAT-T--TCATTTGggcct
gi|36 : --TACTGACT------C---GG---TTTG--GTCACA---GG--AAC-AAAACTG------TTTT-T--TCATTTGgcct
gi|2 : ---TCAG--GTCACA---GG-AAACAAAAATTA----T-TTTT-T--T-ATTTGgtct
gi|28 : c---TCAT--GTCACA---GG-AAAC-AAAAATT----TATTTT-T--TCATTTGaggaaaaaaattggacaggcaggttggaatttcttttattttctttctgcggttcatggatcgaaatagagcaaataaaactaaaataaatgttataaataaaaaaaaaatttaatgatttttttttagatttgtgggttctaaaatattgactcagtcaggtcacaagaaacaaaactattttttcgtttgac
gi|5 : gcCAC--GTCACA---AG-AAAC-CAAAATA----T--TTT-T--TCATTTGtggaaaaaaatgtgtcagtaagtaaaaaattctt
gi|17 : aggcCAT--GTCACA---GG-AGAC-AAAAATA----T-TTTT-T--TCATTTGctggaaaaaatgggtaggtaggtaggaatgtctcttttttttcctacatggttcatggatttgaatcgagcaaaagacaaaaagaaaaaagaaaagaagtttatactctggttaaaacattgacttggtggtgtcacaggaaacaaaactattatttcatttggcc
gi|4 : aggcCAT--GCCACA---GGAAAAC-AAAA--A----T-CTTT-TA-TCATTTGctggaaaaaaaaatgggttggtaggtaggatttttttttattattattctccatgggtcatggatcaaaatggagcgaaagagacaaaaaaaaaataaataaaaa
gi|3 : gggCAT--GTCACA---GG-AAAC-AAAATTT----T-TGTT-T--TCTTTTGcttgaaaaaaaactgagccagtaggttggaatttctttttttcccctccacgattcatggatggaattgaaaattggagtgagagaaaaagaactcaataaaaaaacttaactcatatctttaaatattgacttggtcgggtcataggaaacaaaactattttttct
gi|1 : taggcCAT--GTCACA---GG-AA-C-AAAAGTAAAAATATTTT-T--TCATTTctgggaaataacaggtcgataggtaggaaatccttttttttcatggtccatcgatcaaaatggagcaaaagacaaaaaaaaattgaaaacaatcaaataaaaaaattgttgtctctggggttaaaacattaacttggtcgagtcgcagaaaacaaaaatatattttcatt
gi|14 : caCAT--GCTACA---GG-AGAC-AAAAGTA----T--TTT-T--TCATTTctgaaaaaaaaaaatagggtctgtaggtaagaatttcttcccctacacccacccaccaaccccctttccatggttcatagatcaaaatggagtggaggacaaaaaaaaaataaaaataaaataaaacttccttttttttaatcggaggttagattattggcttggtagagttacaggaaacaaaactattttttttcatttggc
gi|24 : ttaatcaCAT--GTCACA---GG-AATC-AAAAATA------TTCT-T--TCATTTctggaaaaaaaatgggatggtagatagtttgtttttttctctccatggttcatggatcaaattgatcaaaagtcacaggaaacaaaaccatttttttttattttgccttaattgcagctcatct
gi|13 : tttaggccaCAT--GTCACA---GG-AAACAAAAATTA----T-TTTT-T--TCATTTctgaaaaaaatttggtcactaggtaggaatttctttttatttcttcatagttcaa
gi|32 : aataaggcaCAT--GTCACA---GG-AAAC-AAA--TA----TATTTT-T--TCATTTGctaggaaaaaataggtcggaaggtagaaattaaaaaaaaaattcaataaaacacgggtgtgggggagtgggggttaaatattcaaatattgacttggttgggtcacaggaaacaaaactattttt
gi|26 : ttaagtCAT--GTCACA---GG-AAAC-TTAAATA----T-TTTT-T--TCATTTGctggacaaaaattgggtcagtaaat
gi|30 : aaggCAT--GTCACA---GG-AAAC-AAAAAAA----TGTTTT-T--T--TTTGcttaaaaaaaaaactgggttggtaggaactattttttc
gi|20 : tcaggcG--GTGACA---GG-AAAT-AATACTA------TTGT-T--TCATTTGctgaaaaaaatttgggtctgtaggtaa
gi|19 : tctccatgttttatgtatcgaaatggagagaaagacaaataaaatccaccaaaaaatcaatggtggtggttataacattgcctcaatagG--GTGACA---GG-AAAT-AATACTA------TTGT-T--TCATTTGgcc
gi|37 : tctccatgttttatgtatcgaaatggagagaaagacaaataaaatccaccaaaaaatcaatggtggtggttataacattgcctcaatag--GTCACA---TG-AAAC-ACAAATA----T-TATT-T--TCATTTGgcc
gi|7 : tgaggcTCACA---GG-AAAC-ACAAATA----TATTTT-T--TCATTTGatactg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): AAATGAAAAAAAAAAATTTCCTTCGACATGCTGGGAATTTTTTTTTCTTTCCATGGTTCCAAAATTTTTAACAAAAAAAAAAAAAATTCTATTTGATTCGG
Unaligned ( gi|29 ): AAAAAAAGTTTGTTTCTGGTTAGCCCCTGAAAAAAAAATAGGGTAGGTAGGTAGGCTTCCACCCCTCTCCC
Unaligned ( gi|33 ): CCTAAACAGTGAATGCACATGGAAATTCATGTCAATAAATTTAAATACAAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22
lowQualScore : 2 1 7 1 55 1 1 66666 3333 1 22 1 1 6666 3 555555555 1 333 4 1 6666 2 3333333333333333333333333 22 5555555 333 55555 1 22 8888888 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 22 0 4444 2 2 555555 55 22
lowQualScore : . . . . .. . . ..... .... . .. . . .... . ......... . ... . . .... . ......................... .. ....... ... ..... . .. ....... ..................................................................................................................................................................................................................... . .. . .... . . ...... .. ..
lowQualScore : 0 8 3 8 99 7 7 11111 5555 6 22 5 5 6666 1 333333333 6 000 5 8 0000 0 9999999999999999999999999 44 7777777 000 00000 9 88 5555555 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 66 4 2222 0 9 555555 22 99
consensus : TAAGGCCAAA-TGAAA-A-AA-TA--T-TTT-TGTTT-----CCTGTGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CGG-----TAGG-TAGGAAT---TTC-T----TTT-TT-T---------------T----TCTCT--C-------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC--------------------G-----------------A-----------------AAG---------A---------C----------------AA-------------------T------------T-----------T-------TT---------------------TT---------------TTT-A---C------TC-TGG-GGT-TAAAA--TATTGACTCG----G-TCGGGTCAC------AGGAAACAAAACTA--TTTTT--TCATTTG
Reference ( family-522 ) : TAAGGCCAAA-TGAAA-A-AA-TA--T-TTT-TGTTT-----CCTGTGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CGG-----TAGG-TAGGAAT---TNC-T----TTT-TT-T---------------T----TCCCT--C-------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC--------------------G-----------------A-----------------AAG---------A---------C----------------AA-------------------T------------T-----------T-------TT---------------------TT---------------TTT-A---C------TC-TGG-GAT-TAAAA--TATTGACTCG----G-TCGNGTCAC------AGGAAACAAAACTA-TTTTTT--TCATTTG
gi|1 : AAA-TGAAA-A-AA-TA--T-TTT-TACTTTTGTTCCTGTGACATG----C-T--GA-AAAAA-AAAAATA-GGGT-CTG-----TAGG-TAAGAAT---TTC-T----TCC-CC-TACACCCACCCACCAAC----CCCCTTTC-------CATGGTTC---ATAG-----ATCAAAA--TGG-------AGT--------------------GGAGGACAAAAAAAAAATA-----------------AAA---------A---------T----------------AAAATAAAAC-----------T------------TCC---------T-------TT---------------------TT---------------TTT-A---A------TC-GGA-GGT-TAGAT--TATTGGCTTG----G-TAGAGTTAC------AGGAAACAAAACTATTTTTTT--TCATTTG
gi|10 : caAAA-CAAAACA-AA-AA--T-T----GTTT-----CCAACTGCATG----C-C--GG-AAAAA-AAA--TT-GGGT-CAG-----TAGA-TAGCAGG---TAT-T----TTT-TT------------------------CTT--C-------CATAGTTC---ATGG-----ATGGAAA--TGGAATTGAAAGG--------------------G-----------------A-----------------AAA---------A---------A----------------AA------------------------------------------------------------------------------------------------A---C----------GA-AAA-AAAAA--TAT----TCG----G-TCGGGTCAC------AGGAATCAAAAC-A-ATTTTT--TCATTTGgc
gi|11 : aaTGACATG----C-T--GA-ATACA-AA---TT-TGGT-TGG-----TAGA-TAGGGGT---TTC-TATTATTT-TTAT---------------T----TTTCT--C-------CATGGCTC---ATGG-----TTCGAAA--TGGA------AGC--------------------T-----------------A-----------------AAG---------A---------C----------------AA-----------------------------------------------------------------------------AACGAAAAAAAAAAATTT-A---C------TC--GG-GAT-TAAGA--TATTGACTAG----G-TTGGGTCAA------AGGCAACAAAACTA--TTTTT--TCATCTGgcc
gi|12 : TGAAGCCAAA-TGAAT-T-AA-T-----------TTT-----CCTGCGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CAT-----TAGG-TATCAGT---TCC-T----TTT-TT-T---------------C----TCTCT--C-------CATGGTTC---Ag
gi|12 : tatc------AGGAAACAAAACTA-TTTTTTCCTCATTTaataataaagaaaataagaacaaaaaaggaaacaaaactattttttcctcattttgccgcagtaacagttcctat
gi|13 : tatctgaagccaaatgaattaattttcctgcgacatgctggaaaaaaattgggtcattaggtatcagttcctttttttctctctccatggttcaaataataaagaaaataagaacaaaaaTAAGGCAAAA-TGAAA-A-AAATAA-T-TTT-TGTTT-----CCTGTGACATG----C-T--AG-GAAAA-AA----T-AGGT-CGG-----AAGG-TAGAAAT---Ttgccgcagtaacagttcctat
gi|13 : aaAT-TCAAA--TATTGACTTG----G-TTGGGTCAC------AGGAAACAAAACTA-TTTTTaaaaaaaaaattcaataaaacacgggtgtgggggagtgggggttaaatattcaaatattgacttggttgggtcacaggaaacaaaactattttt
gi|14 : aataaggcaaaatgaaaaaaataatttttgtttcctgtgacatgctaggaaaaaataggtcggaaggtagaaattaaaaaaaaaattcaataaaacacgggtgtgggggagtgggggttaaatAAA-TGAAA-A-AA-TA--C-TTT-TGTCT-----CCTGTAGCATG----C-T--GG-AAAAA-AA---AT-GGGA-TGG-----TAGA-TAG---T---T---T----GTT-TT-T---------------T----TCTCT--C-------CATGGTTC---ATGG-----ATC-AAA--TTG-------ATC--------------------A-----------------A-----------------AAGTCACAGGAAA---------C----------------AAAACC---------------A------------T-----------T-------TT---------------------TT---------------TTT-A---T------TT-TG
gi|15 : ttaatca-AAAAA-AA---AT-ATCT-CGGAAAAATAAG-TAAGAAT---TTC-T----TTT-TT-T---------------TCTTTTTTCT--C-------CATGGTTC---A--------A--AAAA--TGT-------AGA--------------------C-----------------A-----------------AAA---------A--------------------------------------------------------------------------------TT---------------------TT---------------TTA-A---CAAAAATTC-----AAT-AAAAAGTTTTTGACTCG----GATCGGGTCACCGTCACAGCAAACAAAACTA--TTTTT--TCATccttaattgcagctcatct
gi|16 : tgaaaGGTCAAA-TGAAA-A-AT-TA--T-TTT-TGTTT-----C-TGT------------------AAAAA-AA---TT-GTGT-CAG-----TAGG-TAGGTTT---TCA-T----TTT-TA-T---------------T----TTTTG--C-------CATTGTTC---ATGG-----AATGAAA--TGG-------AAC--------------------A-----------------A-----------------AAG---------A---------C----------------
gi|17 : AGGCCAAA-TGAAA-AAAA-TA--T-TTT-TGTCT-----CCTGTGACATG----C-T--GGAAAAAA-AA---AT-GGGT-TGG-----TAGG-TAGGATT---TTT-T----TTTATTAT---------------T----ATTCT--C-------CATGGGTC---ATGG-----ATCAAAA--TGG-------AGC--------------------G-----------------A-----------------AAG---------A---------taaaaaaaaaannnnnnnnnntaaccattgtttctaattacatgttcatgg
gi|18 : T--C-------CATAATTC---ATAG-----ATCCAAA--TAG-------AGC--------------------GAAAGACA----------A-----------------AAG---------A---------G----------------AA-------------------TAAAGAATAAAAAC-----------T-------TT---------------------TTAAAAAAA--------TTC-A------------------AT--AAAA--CATTGACTCT----G-TCGGGTCAC------A-GCAACAAAACTG--TTTAT--TCATTTGgacaaaaaaaaaataaataaaaa
gi|19 : CT--C-------CATGTTTT---ATGT-----ATCGAAA--TGG-------AGA--------------------G-----------------A-----------------AAG---------A---------C----------------AA-------------------gccc
gi|19 : t-TGGTGGT-TATAA--CATTGCCTCA----A-TAGGGTGAC------AGGAAATAATACTA--TTGTT--TCATTTGataaaatccaccaaaaaatcaatggtggtggttataacattgcctcaatagggtgacaggaaataatactattgtttcatttggcc
gi|2 : tctccatgttttatgtatcgaaatggagagaaagacaaataaaatccaccaaaaaatcaatggCCAAA-TAAAA-A-AA-TAA-T-TTT-TGTTT-----CCTGTGACCTG----A-A--GG-AAAAA-AA---TT-GGAC-AGG-----CAGG-TTGGAAT---TTC-T----TTT-AT-T---------------T----TCTTT--CTGCGGTTCATGGATCGAAATAG-----AGC-AAA--TAA-------AACTAAAATAAATGTTATAAATAA-----------------A-----------------AAA---------A---------A----------------AA-------------------T------------T-----------TAATGATTTT---------------------TT---------------TTT-AGATT------TG-TGG-GTTCTAAAA--TATTGACTCA----G-TCAGGTCAC------AAGAAACAAAACTA--TTTTT--TCGTTTGgcc
gi|20 : CT--C-------CATGTTTT---ATGT-----ATCGAAA--TGG-------AGA--------------------G-----------------A-----------------AAG---------A---------C----------------AA-------------------ac
gi|20 : t-TGGTGGT-TATAA--CATTGCCTCA----A-TAGGGTGAC------AGGAAATAATACTA--TTGTT--TCATTTGataaaatccaccaaaaaatcaatggtggtggttataacattgcctcaatagggtgacaggaaataatactattgtttcatttggcc
gi|21 : tctccatgttttatgtatcgaaatggagagaaagacaaataaaatccaccaaaaaatcaatggA--T-TTT-TGTTT-----CCTGTGACATT----C-------------------T-GGGT-C---------GG-TAGGAAT---TTCGTG---TTT-TT-T---------------T----TCTCT--C-------CATGGTTC---ATAG-----GGGGGAA---GG-------GGT--------------------G-----------------G--------------------------------------------------------AG-------------------T------------C-----------T-------T-------------------------------------------------------------------AAA--TATTGA-----------CGGGTCAC------AGGAAACAAAAATA-CTTTTgcc
gi|22 : GAAA-A-AG-TA--T-TTT-CATTT-----C---TGAC-TGGCCCC-T--GA-AAAAAAAA---TA-GGGT-AAG-----TAGA-TA-GAAT---TCC-
gi|23 : -AAAAA-AA---TT-TCCTTCGA-----CATGCTGGGAAT---T---------TT-TT-T---------------T----TCTTT--C-------CATGGTTC---ccccgccccccacccccactctccacccaagaacaaatgaccgttagaagactagaaaa
gi|24 : aaatgaaaaAGGCCAAAATGAAA-G-AA-TA--T-TTT-TGATT-----CCTGTGACATG----C-T---G-AAAAA-AA---TT-TGGT-CAC-----TAGG-TAGGAAT---TTC-T----TTT-TA-T---------------T----T--CT--T-------CATAGTTC---Acaaaatttttaacaaaaaaaaaaaaaattctatttgattcgg
gi|25 : tttT-A---N------NN-NNN-NNN-NAAAA--TACAGACTCGATCGG-TCGGGTCAC------AGGAAACAAAACTA--TTTTT--TCATTTGa
gi|26 : aatgaaaacatgctgAAGGC-AAA-TGAAA-AAAA-TA--T-TTA-AGTTT-----CCTGTGACATG----C-TTAAA-AAAAA-AA---CT-GGGT-T---------GG-TAGGAAC---TAT-T----TTT-Tgcccgagt
gi|27 : T-TAAAA--TATTGACTTT----G-TCATGTTAC------AGGAAACAATACTA--TTTTT--TCATTc
gi|28 : acaaaagacaaaacaaaattGCCAAA-TGAAA-A-AA-TAAAT-TTT-TGTTT-----CCTGTGACATG----A-T--GG-AAAAA-AA----T-GTGT-CAG-----TAAG-TAAAAAA---TTC-T----Tggcct
gi|29 : AAA-A-AA-G------TT-TGTTT-----CTGGTTAGCCC----C-T--GA-AAAAA-AA---ATAGGGT-AGG-----TAGG-TAGG
gi|3 : aAGGCCAAA-AGAAA-ACAA-AA--A-TTT-TGTTT-----CCTGTGACATG----C-T--GG-GAAAT-AA---C--AGGT-CGA-----TAGG-TAGGAAA---TCC-T----TTT-TT-T---------------T-------------------CATGGTCC---ATCG-----ATCAAAA--TGG-------AGC--------------------A-----------------AAAGACAAAAAAAAATTGAAA---------A---------C----------------AA-------------------T------------CAAATAAAAAAAT-------TG---------------------TT---------------GT------C------TC-TGG-GGT-TAAAA--CATTAACTTG----G-TCGAGTCGC------AGAAAACAAAAATA--TATTT--TCATTcttccacccctctccc
gi|30 : tAGGCCAAA-AAAAA-A-CA-TT--T-TTT-TGTTT-----CCTGTGACATG----C-T--GA-AAAAA-AT---TT-GGGT-CTG-----TAGG-TA
gi|31 : tc-A---C------TG-TCA-GAA-TAAAA--TATTGACTTG----G-TTG-GTTTC------AGG-----AAACTA-TTTATT--TCATTTGa
gi|32 : ttccgtaAAGTCAAA-TGAAA-A-AA-TA--T-ATT-TGTTT-----CCTGTGACATG----C-T--GG-ACAAA-AA---TT-GGGT-CAG-----TAgcct
gi|34 : ttACTTG----G-TCGGATCAT------AGGAAAC-AAACTA---TATT--TCATTTGaat
gi|35 : aaaatcacCT--C-------CATGGTTC---ATGG-----ATCTAAA--TGG-------AGC--------------------G-----------------A-----------------AAG---------A---------C----------------AA-------------------gcct
gi|36 : t--TACTGACTCG----G-TTTGGTCAC------AGG-AACAAAACTG--TTTTT--TCATTTGaaactatttattc
gi|37 : TGAGGCCAAA-TGAAA-ATAA-TA--T-TTG-TGTTT-----CATGTGACATA----C-T--Ggtct
gi|4 : GGGCAAA-TGATA-A-AA-GA--T-TTT-TGTTTT----CCTGTGGCATG----CTT--GA-AAAAA-AA---CT-GAGC-CAG-----TAGG-TTGGAAT---TTC------TTT-TT-T---------------T----CCCCT--C-------CACGATTC---ATGGATGGAATTGAAAATTGG-------AGT--------------------G-----------------A-----------------GAG---------AAAAAGAACTC----------------AA-------------------TAAAAAAAC----T-----------T-------AA---------------------CT---------------CAT-A----------TC-T-----T-TA-AA--TATTGACTTG----G-TCGGGTCAT------AGGAAACAAAACTA-TTTTTT--
gi|5 : AGGCCAAA-TGAAA-A-AA-TA--T-TTT-GGTTT-----CTTGTGACGTG----C-T--GG-AAAAA-A-----T-GGGT-AGG-----TAGG-TAGGAAT---GTC-T----CTT-TT-T---------------T----TTCCT--A-------CATGGTTC---ATGG-----ATTTGAA--TCG-------AGC--------------------A-----------------A-----------------AAG---------A---------C----------------AAAAAGAAAAAAGAAAAGAAGT------------T-----------------------------------------------------------TAT-A---C------TC-TGG---T-TAAAA--CATTGACTTG----G-TGGTGTCAC------AGGAAACAAAACTA--TTATT--TCATTTGct
gi|6 : TAAGGCCATA-TGAAA-A-AA-TA--T-TTT-TGTTT-----CCTATGACATG----C-T--AG-AAAAA-AA---TT-GGGT-TAG-----TAGG-TAGGAAT---TAC-T----TTT-TT-TA--------------T----TGCCT--C-------CATGGTTT---ATAG-----ATCGAAA--TTG-------AGC--------------------A-----------------A-----------------AAG---------A---------C----------------AA-------------------T------------T-----------T-------TT---------------------TT---------------TTT-A---C------TC-TGG-AAT-TAAAA--TAATGACTGG----G-TCAGGTCAC------AGGAAACAAAACTA-TTTTTT--TCATTTGgcc
gi|7 : AGGCCAAA-TGAAA-A-AA-TA--TATTTGTGTTT-----CCTGTGAAGTG----C-T--GG-AAAAA-AT---TT-GG----------------------T---TAA-T----TTT-TT-T---------------T-------------------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC--------------------------------------A-----------------AAG---------A---------CAA--------------AA-------------------TA-----------T-----------A-------TT---------------------TT---------------TTT-A---
gi|7 : t-----------------A-----------------AAA---------AT--------C----------------AA-------------------TCAA---------T-----------T-------TT---------------------TT---------------TTA-A---C------TTGTGG-G-T-TAAAA--TATTGACTCaaaaatcaaaaaaaaaaaatcaatcaattttttttaacttgtgggttaaaatattgactcacaagaattttttttttt
gi|8 : taggccaaatgaaaaaatatatttgtgtttcctgtgaagtgctggaaaaaatttggttaattttttttcatggttcatggatcgaaatggagcaaagacaaaatatatttttttaaaaaatcaaaaaaaTAAGGTCAAA-TGAAA-A-AA-TA--T-ATT-TGTTT-----ACAACGACATG----C-T--GC-GAAAA-AA---TT-GGGT-TGA-----TAAG-TAGGAATTTATTC-T----TTT-TT-T---------------C----TCCCT--C-------TATGGTTC---ATGT-----ATCGAAA--TGG-------AGC--------------------G-----------------A-----------------AAG---------A---------CAAAATAAAAATTCAATAA-------------------T------------T-----------T-------TG---------------------TT---------------TTG-A---C------ACATGG-G-T-TTAAA--TATTacaagaattttttttttt
gi|9 : -T--GA-AATAA-AA---TTTGGGT-CA------TAGG-TAGGAAT---TTC-A----TTT-TA-----------------------------C-------CATGGTTC---TTGA-----ATTGAAA--TGG-------AGA--------------------G-----------------A-----------------AAG---------A---------C----------------AA-------------------T------------TAAAC-------T-------TTAAAAATAAAATAAACAAAAACTT---------------TTCGA---C------TA-TTG-GGT-TAAAA--TATTGACATG----A-TCGGGTCAC------AGGGAACAAAACTA--TTTTT--TCATTTGattttttcagttggcct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): CCTAAACAGTGAATGCACATGGAAATTCATGTCAATAAATTTAAATACAAA
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 111111111111111111111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
lowQualScore : 1 333 1 7 1 55 1 1 55555 3333 1 22 1 1 6666 3 1 6666666 1 333 666666 2 4 999999999999999999999999 5555555 333 55555 3 22 8888888 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 999 22 6666666 666 0 4444 2 555555 44 2
lowQualScore : . ... . . . .. . . ..... .... . .. . . .... . . ....... . ... ...... . . ........................ ....... ... ..... . .. ....... ................................................................................................................................................................................................................ ... .. ....... ... . .... . ...... .. .
lowQualScore : 9 000 7 0 7 66 7 7 88888 5555 6 22 5 5 6666 1 5 3333333 6 000 444444 0 2 666666666666666666666666 7777777 000 00000 2 88 5555555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 88 5555555 000 4 2222 0 888888 88 0
consensus : TAAGGCCAAA-TGA---AA-A-AA-TA--T-TTT-TGTTT-----CCTGTGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CGG-----TAGG-TAGGAAT---TTC-T----TTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------T------------T-----------T-------TT---------------------TT---------------TTT-AC-------TC--TG-G-GGT---T--AAA-------A---TATTGACTCG----G-TCGG------GTCACAGGAAACAAAACTA--TTT-TTTCATTTG
Reference ( family-522 ) : TAAGGCCAAA-TGA---AA-A-AA-TA--T-TTT-TGTTT-----CCTGTGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CGG-----TAGG-TAGGAAT---TTC-T----TTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------T------------T-----------T-------TT---------------------TT---------------TTT-AC-------TC--TG-G-GGT---T--AAA-------A---TATTGACTCG----G-TCGG------GTCACAGGAAACAAAACTA--TTT-TTTCATTTG
gi|1 : AAA-TGA---AA-A-AA-TA--T-TTT-TACTTTTGTTCCTGTGACATG----C-T--GA-AAAAA-AAAAATA-GGGT-CTG-----TAGG-TAAGAAT---TTC-T----TCC-CC-TACACCCACCCACCAACCC----CCTTTC-------CATGGTTC---ATAG-----ATCAAAA--TGG-------AGT--------------------G-------G-----------------AGG---------A---------C----------------AAAAAAAAAATAAAAATAAAATAAAACT------------T-----------C-------CT---------------------TTTT-------------TTT-AA-------TC--GG-A-GGT---T--AGA-------T---TATTGGCTTG----G-TAGA------GTTACAGGAAACAAAACTATTTTT-TTTCATTTG
gi|10 : caAAA-CAA---AACA-AA-AA--T-T----GTTT-----CCAACTGCATG----C-C--GG-AAAAA-AAA--TT-GGGT-CAG-----TAGA-TAGCAGG---TA--------TT-TT-T-----------------T----TCT-TC-------CATAGTTC---ATGG-----ATGGAAA--TGGAATTGAAAGG--------------------G-------A-----------------AAA---------A---------A----------------AA------------------------------------------------------------------------------------------------------AC------------G-A-A--------AAA-------AAAATATTCGGTCG----G-----------GTCACAGGAATCAAAACAA--TTT-TTTCATTTGgc
gi|11 : aaTGACATG----C-T--GA-ATACA-AA---TT-TGGT-TGG-----TAGA-TAGGGGT---TTC-TATTATTT-TTAT-----------------T----TTTCTC-------CATGGCTC---ATGG-----TTCGAAA--TGGA------AGC--------------------T-------A-----------------AAG---------A---------C----------------AA-----------------------------------------------------------------------------------AACGAAAAAAAAAAATTT-AC-------TC---G-G-GAT---T--AAG-------A---TATTGACTAG----G-TTGG------GTCAAAGGCAACAAAACTA--TTT-TTTCATCTGgcc
gi|12 : TGAAGCCAAA-TGA---AT-T-AA-T-----------TTT-----CCTGCGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CAT-----TAGG-TATCAGT---TCC-T----TTT-TT-T-----------------C----TCTCTC-------CATGGTTC---Ag
gi|12 : tatcGGCAAAA-TGAGGAAA-A-AA-TA--G-TTT-TGTTT-----CCTaataataaagaaaataagaacaaaaaaggaaacaaaactattttttcctcattttgccgcagtaacagttcctat
gi|13 : tatctgaagccaaatgaattaattttcctgcgacatgctggaaaaaaattgggtcattaggtatcagttcctttttttctctctccatggttcaaataataaagaaaataagaacaaaaaTAAGGCAAAA-TGA---AA-A-AAATAA-T-TTT-TGTTT-----CCTGTGACATG----C-T--AG-GAAAA-AA----T-AGGT-CGG-----AAGG-TAGAAAT---Tgcagtaacagttcctat
gi|13 : aaG-G-GGT---T--AAATATTCAAA---TATTGACTTG----G-TTGG------GTCACAGGAAACAAAACTA--TTT-TTaaaaaaaaaattcaataaaacacgggtgtgggggagtgggggttaaatattcaaatattgacttggttgggtcacaggaaacaaaactattttt
gi|14 : aataaggcaaaatgaaaaaaataatttttgtttcctgtgacatgctaggaaaaaataggtcggaaggtagaaattaaaaaaaaaattcaataaaacacgggtgtgggggagtgAAA-TGA---AA-A-AA-TA--C-TTT-TGTCT-----CCTGTAGCATG----C-T--GG-AAAAA-AA---AT-GGGA-TGG-----TAGA-TAG--------TT-T----GTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATGG-----ATC-AAA--TTG-------ATC--------------------A-------A-----------------AAGTCACAGGAAA---------C----------------AAAACC---------------------A------------T-----------T-------TT---------------------TT---------------TTT-AT-------TT--TG-
gi|15 : ttaatca-AAAAA-AA---AT-ATCT-CGGAAAAATAAG-TAAGAAT---TTC-T----TTT-TT-T-----------------TCTTTTTTCTC-------CATGGTTC---A--------A--AAAA--TGT-------AGA--------------------C-------A-----------------AAA---------A--------------------------------------------------------------------------------------TT---------------------TT---------------TTA-ACAAAAAT-TC-------AAT---A--AAA-------AGT-TTTTGACTCG----GATCGGGTCACCGTCACAGCAAACAAAACTA--TTT-TTTCATccttaattgcagctcatct
gi|16 : tgaaaGGTCAAA-TGA---AA-A-AT-TA--T-TTT-TGTTT-----C-TGT------------------AAAAA-AA---TT-GTGT-CAG-----TAGG-TAGG-TT---TTCAT----TTT-TA-T-----------------T----TTTTGC-------CATTGTTC---ATGG-----AATGAAA--TGG-------AAC--------------------A-------A-----------------AAG---------A---------C----------------
gi|17 : AGGCCAAA-TGA---AA-AAAA-TA--T-TTT-TGTCT-----CCTGTGACATG----C-T--GGAAAAAA-AA---AT-GGGT-TGG-----TAGG-TAGGATT---TTT-T----TTTATTAT-----------------T----ATTCTC-------CATGGGTC---ATGG-----ATCAAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------taaaaaaaaaannnnnnnnnntaaccattgtttctaattacatgttcatgg
gi|18 : TC-------CATAATTC---ATAG-----ATCCAAA--TAG-------AGC--------------------GAAAGACAA-----------------AAG---------A---------G----------------AA-------------------------TAAAGAATAAAAAC-----------T-------TT---------------------TTAAAAAAA--------TTC-AA-------T-----------------AAA-------A---CATTGACTCT----G-TCGG------GTCACA-GCAACAAAACTG--TTT-ATTCATTTGgacaaaaaaaaaataaataaaaa
gi|19 : TCTC-------CATGTTTT---ATGT-----ATCGAAA--TGG-------AGA--------------------G-------A-----------------AAG---------A---------C----------------AA---------------------------------------------------------------------------------ATAAAA-----------TCC-ACCAAAAAATCAATG-GTGGTGGTT--ATA-------A---CATTGCCTCA----A-TAGG------GTGACAGGAAATAATACTA--TTG-TTTCATTTGgccc
gi|2 : CCAAA-TAA---AA-A-AA-TAA-T-TTT-TGTTT-----CCTGTGACCTG----A-A--GG-AAAAA-AA---TT-GGAC-AGG-----CAGG-TTGGAAT---TTC-T----TTT-AT-T-----------------T----TCTTTCTGCGGTTCATGGATCGAAATAG-----AGC-AAA--TAA-------AACTAAAATAAATGTTATAAATAA-------A-----------------AAA---------A---------A----------------AA-------------------------T------------T-----------TAATGATTTT---------------------TT---------------TTT-AGA------TT--TGTG-GGT---TCTAAA-------A---TATTGACTCA----G-TCAG------GTCACAAGAAACAAAACTA--TTT-TTTCGTTTGgcc
gi|20 : TCTC-------CATGTTTT---ATGT-----ATCGAAA--TGG-------AGA--------------------G-------A-----------------AAG---------A---------C----------------AA---------------------------------------------------------------------------------ATAAAA-----------TCC-ACCAAAAAATCAATG-GTGGTGGTT--ATA-------A---CATTGCCTCA----A-TAGG------GTGACAGGAAATAATACTA--TTG-TTTCATTTGac
gi|21 : A--T-TTT-TGTTT-----CCTGTGACATT----C-------------------T-GGGT-C---------GG-TAGGAAT---TTCGTG---TTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATAG---------------GG-------GG---------------------G-------A-----------------AGG---------G--------------------------------------------------------------------------------------------------------------------------------------------G--TG-G-AGTC--T--TAA-------A---TATTGA-----------CGG------GTCACAGGAAACAAAAATA--CTT-TTgcc
gi|22 : GA---AA-A-AG-TA--T-TTT-CATTT-----C---TGAC-TGGCCCC-T--GA-AAAAAAAA---TA-GGGT-AAG-----TAGA-TA-GAAT---TCC-
gi|23 : -AAAAA-AA---TT-TCCTTCGA-----CATGCTGGGAAT---TT---------T-TT-T-----------------T----TCTTTC-------CATGGTTC---ccccgccccccacccccactctccacccaagaacaaatgaccgttagaagactagaaaa
gi|24 : aaatgaaaaAGGCCAAAATGA---AA-G-AA-TA--T-TTT-TGATT-----CCTGTGACATG----C-T---G-AAAAA-AA---TT-TGGT-CAC-----TAGG-TAGGAAT---TTC-T----TTT-TA-T-----------------T------TCTT-------CATAGTTC---Acaaaatttttaacaaaaaaaaaaaaaattctatttgattcgg
gi|25 : tttT-AN-------NN--NN-N-NNN---N--AAA-------A---TACAGACTCGATCGG-TCGG------GTCACAGGAAACAAAACTA--TTT-TTTCATTTGa
gi|26 : aatgaaaacatgctgAAGGC-AAA-TGA---AA-AAAA-TA--T-TTA-AGTTT-----CCTGTGACATG----C-TTAAA-AAAAA-AA---CT-GGGT-T---------GG-TAGGAAC---TAT-T----TTT-Tgcccgagt
gi|27 : T---T--AAA-------A---TATTGACTTT----G-TCAT------GTTACAGGAAACAATACTA--TTT-TTTCATTc
gi|28 : acaaaagacaaaacaaaattGCCAAA-TGA---AA-A-AA-TAAAT-TTT-TGTTT-----CCTGTGACATG----A-T--GG-AAAAA-AA----T-GTGT-CAG-----TAAG-TAAAAAA---TTC-T----Tggcct
gi|29 : A---AA-A-AA-G------TT-TGTTT-----CTGGTTAGCCC----C-T--GA-AAAAA-AA---ATAGGGT-AGG-----TAGG-TAGG
gi|3 : aAGGCCAAA-AGA---AA-ACAA-AA--A-TTT-TGTTT-----CCTGTGACATG----C-T--GG-GAAAT-AA---C--AGGT-CGA-----TAGG-TAGGAAA---TCC-T----TTT-TT-T-----------------T-----------------CATGGTCC---ATCG-----ATCAAAA--TGG-------AGC--------------------A-------AAAGACAAAAAAAAATTGAAA---------A---------C----------------AA-------------------------T------------CAAATAAAAAAAT-------TG---------------------TT---------------GT---C-------TC--TG-G-GGT---T--AAA-------A---CATTAACTTG----G-TCGA------GTCGCAGAAAACAAAAATA--TAT-TTTCATTcttccacccctctccc
gi|30 : tAGGCCAAA-AAA---AA-A-CA-TT--T-TTT-TGTTT-----CCTGTGACATG----C-T--GA-AAAAA-AT---TT-GGGT-CTG-----TAGG-TA
gi|31 : tc---T--AAA-------A---TATTGACTTG----G-TTGG------TTT-CAGG-----AAACTA--TTTATTTCATTTGa
gi|32 : ttccgtaactgtcagaaAAGTCAAA-TGA---AA-A-AA-TA--T-ATT-TGTTT-----CCTGTGACATG----C-T--GG-ACAAA-AA---TT-GGGT-CAG-----TAgcct
gi|34 : ttACTTG----G-TCGG------ATCATAGGAAAC-AAACTA---TA-TTTCATTTGaat
gi|35 : aaaatcacTCTC-------CATGGTTC---ATGG-----ATCTAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------gcct
gi|36 : ---TACTGACTCG----G-TTTG------GTCACAGGAA-CAAAACTG--TTT-TTTCATTTGaaactatttattc
gi|37 : TGAGGCCAAA-TGA---AA-ATAA-TA--T-TTG-TGTTT-----CATGTGACATA----C-T--Ggtct
gi|4 : GGGCAAA-TGA---TA-A-AA-GA--T-TTT-TGTTTT----CCTGTGGCATG----CTT--GA-AAAAA-AA---CT-GAGC-CAG-----TAGG-TTGGAAT---TTC------TTT-TT-T-----------------T----CCCCTC-------CACGATTC---ATGGATGGAATTGAAAATTGG-------AGT--------------------G-------A-----------------GAG---------AAAAAGAACTC----------------AA-------------------------TAAAAAAAC----T-----------T-------AA---------------------CT---------------CAT-A--------TC--T------T---T--A-A-------A---TATTGACTTG----G-TCGG------GTCATAGGAAACAAAACTA--TTT-TTTC
gi|5 : AGGCCAAA-TGA---AA-A-AA-TA--T-TTT-GGTTT-----CTTGTGACGTG----C-T--GG-AAAAA-A-----T-GGGT-AGG-----TAGG-TAGGAAT---GTC-T----CTT-TT-T-----------------T----TTCCTA-------CATGGTTC---ATGG-----ATTTGAA--TCG-------AGC--------------------A-------A-----------------AAG---------A---------C----------------AAAAAGAAAAAAGAAAAGAAG------T------------T-----------------------------------------------------------TAT-AC-------TC--T----GGT---T--AAA-------A---CATTGACTTG----G-TGGT------GTCACAGGAAACAAAACTA--TTA-TTTCATTTGt
gi|6 : TAAGGCCATA-TGA---AA-A-AA-TA--T-TTT-TGTTT-----CCTATGACATG----C-T--AG-AAAAA-AA---TT-GGGT-TAG-----TAGG-TAGGAAT---TAC-T----TTT-TT-TA----------------T----TGCCTC-------CATGGTTT---ATAG-----ATCGAAA--TTG-------AGC--------------------A-------A-----------------AAG---------A---------C----------------AA-------------------------T------------T-----------T-------TT---------------------TT---------------TTT-AC-------TC--TG-G-AAT---T--AAA-------A---TAATGACTGG----G-TCAG------GTCACAGGAAACAAAACTAT-TTT-TTTCATTTGgcc
gi|7 : AGGCCAAA-TGA---AA-A-AA-TA--TATTTGTGTTT-----CCTGTGAAGTG----C-T--GG-AAAAA--A---TT-TGGT-T----------------AAT---TTT-T----TTT----------------------------------------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC----------------------------A-----------------AAG---------A---------CAA--------------AA-------------------------TA-----------T-----------A-------TT---------------------TT---------------TTT-A
gi|7 : t-------A-----------------AAA---------AT--------C----------------AA-------------------------TCAA---------T-----------T-------TT---------------------TT---------------TTA-AC-------T---TGTG-GGT---T--AAA-------A---TATTGACTCaaaaatcaaaaaaaaaaaatcaatcaattttttttaacttgtgggttaaaatattgactcacaagaattttttttttt
gi|8 : taggccaaatgaaaaaatatatttgtgtttcctgtgaagtgctggaaaaaatttggttaattttttttcatggttcatggatcgaaatggagcaaagacaaaatatatttttttaaaaaatcaaaaaaaTAAGGTCAAA-TGA---AA-A-AA-TA--T-ATT-TGTTT-----ACAACGACATG----C-T--GC-GAAAA-AA---TT-GGGT-TGA-----TAAG-TAGGAATTTATTC-T----TTT-TT-T-----------------C----TCCCTC-------TATGGTTC---ATGT-----ATCGAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------CAAAATAAAAATTCAATAA-------------------------T------------T-----------T-------TG---------------------TT---------------TTG-AC-------AC--AT-G-GGT---T--TAA-------A---TATTacaagaattttttttttt
gi|9 : -T--GA-AATAA-AA---TTTGGGT-CA------TAGG-TAGGAAT---TTC-A----TTT-TA-----------------------------C-------CATGGTTC---TTGA-----ATTGAAA--TGG-------AGA--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------T------------TAAAC-------T-------TTAAAAATAAAATAAACAAAAACTT---------------TTCGAC-------TA--TT-G-GGT---T--AAA-------A---TATTGACATG----A-TCGG------GTCACAGGGAACAAAACTA--TTT-TTTCATTTGattttttcagttggcct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): CCTAAACAGTGAATGCACATGGAAATTCATGTCAATAAATTTAAATACAAA
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 111111111111111111111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
lowQualScore : 1 333 1 7 1 55 1 1 55555 3333 1 22 1 1 6666 3 1 6666666 1 333 666666 2 4 999999999999999999999999 5555555 333 55555 3 22 8888888 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 999 22 6666666 666 0 4444 2 555555 44 2
lowQualScore : . ... . . . .. . . ..... .... . .. . . .... . . ....... . ... ...... . . ........................ ....... ... ..... . .. ....... ................................................................................................................................................................................................................ ... .. ....... ... . .... . ...... .. .
lowQualScore : 9 000 7 0 7 66 7 7 88888 5555 6 22 5 5 6666 1 5 3333333 6 000 444444 0 2 666666666666666666666666 7777777 000 00000 2 88 5555555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 88 5555555 000 4 2222 0 888888 88 0
consensus : TAAGGCCAAA-TGA---AA-A-AA-TA--T-TTT-TGTTT-----CCTGTGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CGG-----TAGG-TAGGAAT---TTC-T----TTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------T------------T-----------T-------TT---------------------TT---------------TTT-AC-------TC--TG-G-GGT---T--AAA-------A---TATTGACTCG----G-TCGG------GTCACAGGAAACAAAACTA--TTT-TTTCATTTG
Reference ( family-522 ) : TAAGGCCAAA-TGA---AA-A-AA-TA--T-TTT-TGTTT-----CCTGTGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CGG-----TAGG-TAGGAAT---TTC-T----TTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------T------------T-----------T-------TT---------------------TT---------------TTT-AC-------TC--TG-G-GGT---T--AAA-------A---TATTGACTCG----G-TCGG------GTCACAGGAAACAAAACTA--TTT-TTTCATTTG
gi|1 : AAA-TGA---AA-A-AA-TA--T-TTT-TACTTTTGTTCCTGTGACATG----C-T--GA-AAAAA-AAAAATA-GGGT-CTG-----TAGG-TAAGAAT---TTC-T----TCC-CC-TACACCCACCCACCAACCC----CCTTTC-------CATGGTTC---ATAG-----ATCAAAA--TGG-------AGT--------------------G-------G-----------------AGG---------A---------C----------------AAAAAAAAAATAAAAATAAAATAAAACT------------T-----------C-------CT---------------------TTTT-------------TTT-AA-------TC--GG-A-GGT---T--AGA-------T---TATTGGCTTG----G-TAGA------GTTACAGGAAACAAAACTATTTTT-TTTCATTTG
gi|10 : caAAA-CAA---AACA-AA-AA--T-T----GTTT-----CCAACTGCATG----C-C--GG-AAAAA-AAA--TT-GGGT-CAG-----TAGA-TAGCAGG---TA--------TT-TT-T-----------------T----TCT-TC-------CATAGTTC---ATGG-----ATGGAAA--TGGAATTGAAAGG--------------------G-------A-----------------AAA---------A---------A----------------AA------------------------------------------------------------------------------------------------------AC------------G-A-A--------AAA-------AAAATATTCGGTCG----G-----------GTCACAGGAATCAAAACAA--TTT-TTTCATTTGgc
gi|11 : aaTGACATG----C-T--GA-ATACA-AA---TT-TGGT-TGG-----TAGA-TAGGGGT---TTC-TATTATTT-TTAT-----------------T----TTTCTC-------CATGGCTC---ATGG-----TTCGAAA--TGGA------AGC--------------------T-------A-----------------AAG---------A---------C----------------AA-----------------------------------------------------------------------------------AACGAAAAAAAAAAATTT-AC-------TC---G-G-GAT---T--AAG-------A---TATTGACTAG----G-TTGG------GTCAAAGGCAACAAAACTA--TTT-TTTCATCTGgcc
gi|12 : TGAAGCCAAA-TGA---AT-T-AA-T-----------TTT-----CCTGCGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CAT-----TAGG-TATCAGT---TCC-T----TTT-TT-T-----------------C----TCTCTC-------CATGGTTC---Ag
gi|12 : tatcGGCAAAA-TGAGGAAA-A-AA-TA--G-TTT-TGTTT-----CCTaataataaagaaaataagaacaaaaaaggaaacaaaactattttttcctcattttgccgcagtaacagttcctat
gi|13 : tatctgaagccaaatgaattaattttcctgcgacatgctggaaaaaaattgggtcattaggtatcagttcctttttttctctctccatggttcaaataataaagaaaataagaacaaaaaTAAGGCAAAA-TGA---AA-A-AAATAA-T-TTT-TGTTT-----CCTGTGACATG----C-T--AG-GAAAA-AA----T-AGGT-CGG-----AAGG-TAGAAAT---Tgcagtaacagttcctat
gi|13 : aaG-G-GGT---T--AAATATTCAAA---TATTGACTTG----G-TTGG------GTCACAGGAAACAAAACTA--TTT-TTaaaaaaaaaattcaataaaacacgggtgtgggggagtgggggttaaatattcaaatattgacttggttgggtcacaggaaacaaaactattttt
gi|14 : aataaggcaaaatgaaaaaaataatttttgtttcctgtgacatgctaggaaaaaataggtcggaaggtagaaattaaaaaaaaaattcaataaaacacgggtgtgggggagtgAAA-TGA---AA-A-AA-TA--C-TTT-TGTCT-----CCTGTAGCATG----C-T--GG-AAAAA-AA---AT-GGGA-TGG-----TAGA-TAG--------TT-T----GTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATGG-----ATC-AAA--TTG-------ATC--------------------A-------A-----------------AAGTCACAGGAAA---------C----------------AAAACC---------------------A------------T-----------T-------TT---------------------TT---------------TTT-AT-------TT--TG-
gi|15 : ttaatca-AAAAA-AA---AT-ATCT-CGGAAAAATAAG-TAAGAAT---TTC-T----TTT-TT-T-----------------TCTTTTTTCTC-------CATGGTTC---A--------A--AAAA--TGT-------AGA--------------------C-------A-----------------AAA---------A--------------------------------------------------------------------------------------TT---------------------TT---------------TTA-ACAAAAAT-TC-------AAT---A--AAA-------AGT-TTTTGACTCG----GATCGGGTCACCGTCACAGCAAACAAAACTA--TTT-TTTCATccttaattgcagctcatct
gi|16 : tgaaaGGTCAAA-TGA---AA-A-AT-TA--T-TTT-TGTTT-----C-TGT------------------AAAAA-AA---TT-GTGT-CAG-----TAGG-TAGG-TT---TTCAT----TTT-TA-T-----------------T----TTTTGC-------CATTGTTC---ATGG-----AATGAAA--TGG-------AAC--------------------A-------A-----------------AAG---------A---------C----------------
gi|17 : AGGCCAAA-TGA---AA-AAAA-TA--T-TTT-TGTCT-----CCTGTGACATG----C-T--GGAAAAAA-AA---AT-GGGT-TGG-----TAGG-TAGGATT---TTT-T----TTTATTAT-----------------T----ATTCTC-------CATGGGTC---ATGG-----ATCAAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------taaaaaaaaaannnnnnnnnntaaccattgtttctaattacatgttcatgg
gi|18 : TC-------CATAATTC---ATAG-----ATCCAAA--TAG-------AGC--------------------GAAAGACAA-----------------AAG---------A---------G----------------AA-------------------------TAAAGAATAAAAAC-----------T-------TT---------------------TTAAAAAAA--------TTC-AA-------T-----------------AAA-------A---CATTGACTCT----G-TCGG------GTCACA-GCAACAAAACTG--TTT-ATTCATTTGgacaaaaaaaaaataaataaaaa
gi|19 : TCTC-------CATGTTTT---ATGT-----ATCGAAA--TGG-------AGA--------------------G-------A-----------------AAG---------A---------C----------------AA---------------------------------------------------------------------------------ATAAAA-----------TCC-ACCAAAAAATCAATG-GTGGTGGTT--ATA-------A---CATTGCCTCA----A-TAGG------GTGACAGGAAATAATACTA--TTG-TTTCATTTGgccc
gi|2 : CCAAA-TAA---AA-A-AA-TAA-T-TTT-TGTTT-----CCTGTGACCTG----A-A--GG-AAAAA-AA---TT-GGAC-AGG-----CAGG-TTGGAAT---TTC-T----TTT-AT-T-----------------T----TCTTTCTGCGGTTCATGGATCGAAATAG-----AGC-AAA--TAA-------AACTAAAATAAATGTTATAAATAA-------A-----------------AAA---------A---------A----------------AA-------------------------T------------T-----------TAATGATTTT---------------------TT---------------TTT-AGA------TT--TGTG-GGT---TCTAAA-------A---TATTGACTCA----G-TCAG------GTCACAAGAAACAAAACTA--TTT-TTTCGTTTGgcc
gi|20 : TCTC-------CATGTTTT---ATGT-----ATCGAAA--TGG-------AGA--------------------G-------A-----------------AAG---------A---------C----------------AA---------------------------------------------------------------------------------ATAAAA-----------TCC-ACCAAAAAATCAATG-GTGGTGGTT--ATA-------A---CATTGCCTCA----A-TAGG------GTGACAGGAAATAATACTA--TTG-TTTCATTTGac
gi|21 : A--T-TTT-TGTTT-----CCTGTGACATT----C-------------------T-GGGT-C---------GG-TAGGAAT---TTCGTG---TTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATAG---------------GG-------GG---------------------G-------A-----------------AGG---------G--------------------------------------------------------------------------------------------------------------------------------------------G--TG-G-AGTC--T--TAA-------A---TATTGA-----------CGG------GTCACAGGAAACAAAAATA--CTT-TTgcc
gi|22 : GA---AA-A-AG-TA--T-TTT-CATTT-----C---TGAC-TGGCCCC-T--GA-AAAAAAAA---TA-GGGT-AAG-----TAGA-TA-GAAT---TCC-
gi|23 : -AAAAA-AA---TT-TCCTTCGA-----CATGCTGGGAAT---TT---------T-TT-T-----------------T----TCTTTC-------CATGGTTC---ccccgccccccacccccactctccacccaagaacaaatgaccgttagaagactagaaaa
gi|24 : aaatgaaaaAGGCCAAAATGA---AA-G-AA-TA--T-TTT-TGATT-----CCTGTGACATG----C-T---G-AAAAA-AA---TT-TGGT-CAC-----TAGG-TAGGAAT---TTC-T----TTT-TA-T-----------------T------TCTT-------CATAGTTC---Acaaaatttttaacaaaaaaaaaaaaaattctatttgattcgg
gi|25 : tttT-AN-------NN--NN-N-NNN---N--AAA-------A---TACAGACTCGATCGG-TCGG------GTCACAGGAAACAAAACTA--TTT-TTTCATTTGa
gi|26 : aatgaaaacatgctgAAGGC-AAA-TGA---AA-AAAA-TA--T-TTA-AGTTT-----CCTGTGACATG----C-TTAAA-AAAAA-AA---CT-GGGT-T---------GG-TAGGAAC---TAT-T----TTT-Tgcccgagt
gi|27 : T---T--AAA-------A---TATTGACTTT----G-TCAT------GTTACAGGAAACAATACTA--TTT-TTTCATTc
gi|28 : acaaaagacaaaacaaaattGCCAAA-TGA---AA-A-AA-TAAAT-TTT-TGTTT-----CCTGTGACATG----A-T--GG-AAAAA-AA----T-GTGT-CAG-----TAAG-TAAAAAA---TTC-T----Tggcct
gi|29 : A---AA-A-AA-G------TT-TGTTT-----CTGGTTAGCCC----C-T--GA-AAAAA-AA---ATAGGGT-AGG-----TAGG-TAGG
gi|3 : aAGGCCAAA-AGA---AA-ACAA-AA--A-TTT-TGTTT-----CCTGTGACATG----C-T--GG-GAAAT-AA---C--AGGT-CGA-----TAGG-TAGGAAA---TCC-T----TTT-TT-T-----------------T-----------------CATGGTCC---ATCG-----ATCAAAA--TGG-------AGC--------------------A-------AAAGACAAAAAAAAATTGAAA---------A---------C----------------AA-------------------------T------------CAAATAAAAAAAT-------TG---------------------TT---------------GT---C-------TC--TG-G-GGT---T--AAA-------A---CATTAACTTG----G-TCGA------GTCGCAGAAAACAAAAATA--TAT-TTTCATTcttccacccctctccc
gi|30 : tAGGCCAAA-AAA---AA-A-CA-TT--T-TTT-TGTTT-----CCTGTGACATG----C-T--GA-AAAAA-AT---TT-GGGT-CTG-----TAGG-TA
gi|31 : tc---T--AAA-------A---TATTGACTTG----G-TTGG------TTT-CAGG-----AAACTA--TTTATTTCATTTGa
gi|32 : ttccgtaactgtcagaaAAGTCAAA-TGA---AA-A-AA-TA--T-ATT-TGTTT-----CCTGTGACATG----C-T--GG-ACAAA-AA---TT-GGGT-CAG-----TAgcct
gi|34 : ttACTTG----G-TCGG------ATCATAGGAAAC-AAACTA---TA-TTTCATTTGaat
gi|35 : aaaatcacTCTC-------CATGGTTC---ATGG-----ATCTAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------gcct
gi|36 : ---TACTGACTCG----G-TTTG------GTCACAGGAA-CAAAACTG--TTT-TTTCATTTGaaactatttattc
gi|37 : TGAGGCCAAA-TGA---AA-ATAA-TA--T-TTG-TGTTT-----CATGTGACATA----C-T--Ggtct
gi|4 : GGGCAAA-TGA---TA-A-AA-GA--T-TTT-TGTTTT----CCTGTGGCATG----CTT--GA-AAAAA-AA---CT-GAGC-CAG-----TAGG-TTGGAAT---TTC------TTT-TT-T-----------------T----CCCCTC-------CACGATTC---ATGGATGGAATTGAAAATTGG-------AGT--------------------G-------A-----------------GAG---------AAAAAGAACTC----------------AA-------------------------TAAAAAAAC----T-----------T-------AA---------------------CT---------------CAT-A--------TC--T------T---T--A-A-------A---TATTGACTTG----G-TCGG------GTCATAGGAAACAAAACTA--TTT-TTTC
gi|5 : AGGCCAAA-TGA---AA-A-AA-TA--T-TTT-GGTTT-----CTTGTGACGTG----C-T--GG-AAAAA-A-----T-GGGT-AGG-----TAGG-TAGGAAT---GTC-T----CTT-TT-T-----------------T----TTCCTA-------CATGGTTC---ATGG-----ATTTGAA--TCG-------AGC--------------------A-------A-----------------AAG---------A---------C----------------AAAAAGAAAAAAGAAAAGAAG------T------------T-----------------------------------------------------------TAT-AC-------TC--T----GGT---T--AAA-------A---CATTGACTTG----G-TGGT------GTCACAGGAAACAAAACTA--TTA-TTTCATTTGt
gi|6 : TAAGGCCATA-TGA---AA-A-AA-TA--T-TTT-TGTTT-----CCTATGACATG----C-T--AG-AAAAA-AA---TT-GGGT-TAG-----TAGG-TAGGAAT---TAC-T----TTT-TT-TA----------------T----TGCCTC-------CATGGTTT---ATAG-----ATCGAAA--TTG-------AGC--------------------A-------A-----------------AAG---------A---------C----------------AA-------------------------T------------T-----------T-------TT---------------------TT---------------TTT-AC-------TC--TG-G-AAT---T--AAA-------A---TAATGACTGG----G-TCAG------GTCACAGGAAACAAAACTAT-TTT-TTTCATTTGgcc
gi|7 : AGGCCAAA-TGA---AA-A-AA-TA--TATTTGTGTTT-----CCTGTGAAGTG----C-T--GG-AAAAA--A---TT-TGGT-T----------------AAT---TTT-T----TTT----------------------------------------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC----------------------------A-----------------AAG---------A---------CAA--------------AA-------------------------TA-----------T-----------A-------TT---------------------TT---------------TTT-A
gi|7 : t-------A-----------------AAA---------AT--------C----------------AA-------------------------TCAA---------T-----------T-------TT---------------------TT---------------TTA-AC-------T---TGTG-GGT---T--AAA-------A---TATTGACTCaaaaatcaaaaaaaaaaaatcaatcaattttttttaacttgtgggttaaaatattgactcacaagaattttttttttt
gi|8 : taggccaaatgaaaaaatatatttgtgtttcctgtgaagtgctggaaaaaatttggttaattttttttcatggttcatggatcgaaatggagcaaagacaaaatatatttttttaaaaaatcaaaaaaaTAAGGTCAAA-TGA---AA-A-AA-TA--T-ATT-TGTTT-----ACAACGACATG----C-T--GC-GAAAA-AA---TT-GGGT-TGA-----TAAG-TAGGAATTTATTC-T----TTT-TT-T-----------------C----TCCCTC-------TATGGTTC---ATGT-----ATCGAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------CAAAATAAAAATTCAATAA-------------------------T------------T-----------T-------TG---------------------TT---------------TTG-AC-------AC--AT-G-GGT---T--TAA-------A---TATTacaagaattttttttttt
gi|9 : -T--GA-AATAA-AA---TTTGGGT-CA------TAGG-TAGGAAT---TTC-A----TTT-TA-----------------------------C-------CATGGTTC---TTGA-----ATTGAAA--TGG-------AGA--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------T------------TAAAC-------T-------TTAAAAATAAAATAAACAAAAACTT---------------TTCGAC-------TA--TT-G-GGT---T--AAA-------A---TATTGACATG----A-TCGG------GTCACAGGGAACAAAACTA--TTT-TTTCATTTGattttttcagttggcct
blockSeqs : A GGA C A A AA A G T GCCC T TA A A AT A T GGAAAAA C TTA TATTA A A TCTTTTT TGCGGTT GAA ATGGA G AT AATTGAA CTAAAATAAATGTTATAAATAAAAAAAAAATTTAATGATTTTTTTTTAGATTTGTG GGT CT TATTCAA AAA ATCG A GTCACC T A
blockSeqs : . . . A . A . . . . . . . . T T . AG . . GTG . A ATTG . . . G . A CAAAAGACAAAAAAAAATTGAAAACAATCAAATAAAAAAATTGTTGTCTCTGG GGT . . GT . . . . .
blockSeqs : . . . C . A . . . . . . . . T . . GG . . AT . . TTC . . . A . . AGAAAGACAATTAAACTTTAAAAATAAAATAAACAAAAACTTTTCGACTATTG C . . . . . . . .
blockSeqs : . . . T . . . . . . . . . . A . . AT . . T . . TTT . . . G . . CGAAAGACAAAAGAGAATAAAGAATAAAAACTTTTTAAAAAAATTCAAT . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A . . GG . . T . . CTC . . . A . . CGAAAGACAAAATAAAAATTCAATAATTTTGTTTTGACACATG . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . GG . . T . . TTC . . . C . . TGAGAGAAAAAGAACTCAATAAAAAAACTTAACTCATATCT . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A . . AG . . T . . TTT . . . G . . CAAAAGACAAAAAGAAAAAAGAAAAGAAGTTTATACTCT . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . GG . . T . . TAT . . . G . . AGAAAGACAAATAAAATCCACCAAAAAATCAATGGT . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . GG . . T . . TTC . . . A . . AGAAAGACAAATAAAATCCACCAAAAAATCAATGGT . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . AG . . T . . TTC . . . T . . CTAAAGACAAAACGAAAAAAAAAAATTTACTCGG . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . GA . . T . . TTC . . . G . . CAAAAGACAATTTTTTTTTTACTCTGG . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . AC . . T . . TCC . . . T . . ACAAAAATTTTTTAACAAAAATTC . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . A . . AG . . T . . TTT . . . G . . GGAAAAAAAAACGA . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . GG . . T . . CTC . . . G . . GAAGGGGTGG . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . GA . . T . . T . . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . TG . . T . . T . . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . C . . AG . . A . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . AG . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . GG . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . AG . . . . . .
blockSeqs : . . . . . . . . . . . . . T . . GA . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ***** T*** TTC********************* **
originalCons : TAAGGCCAAA-TGA---AA-A-AA-TA--T-TTT-TGTTT-----CCTGTGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CGG-----TAGG-TAGGAAT---TTC-T----TTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------T------------T-----------T-------TT---------------------TT---------------TTT-AC-------TC--TG-G-GGT---T--AAA-------A---TATTGACTCG----G-TCGG------GTCACAGGAAACAAAACTA--TTT-TTTCATTTG
finalCons : TAAGGCCAAA-TGA---AA-A-AA-TA--T-TTT-TGTTT-----CCTGTGACATG----C-T--GG-AAAAA-AAT---T-GGGT-CGG-----TAGG-TAGGAAT---TTC-T----TTT-TT-TTTC---------------------TCTC-------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------T------------T-----------T-------TT---------------------TT---------------TTT-AC-------TC--TG-G-GGT---T--AAA-------A---TATTGACTCG----G-TCGG------GTCACAGGAAACAAAACTA--TTT-TTTCATTTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): CCTAAACAGTGAATGCACATGGAAATTCATGTCAATAAATTTAAATACAAA
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 111111111111111111111111 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
lowQualScore : 1 333 1 7 1 55 1 1 55555 3333 1 22 1 1 6666 3 1 6666666 1 333 666666 2 4 999999999999999999999999 5555555 333 55555 3 22 8888888 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 999 22 6666666 666 0 4444 2 555555 44 2
lowQualScore : . ... . . . .. . . ..... .... . .. . . .... . . ....... . ... ...... . . ........................ ....... ... ..... . .. ....... ................................................................................................................................................................................................................ ... .. ....... ... . .... . ...... .. .
lowQualScore : 9 000 7 0 7 66 7 7 88888 5555 6 22 5 5 6666 1 5 3333333 6 000 444444 0 2 666666666666666666666666 7777777 000 00000 2 88 5555555 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 88 5555555 000 4 2222 0 888888 88 0
consensus : TAAGGCCAAA-TGA---AA-A-AA-TA--T-TTT-TGTTT-----CCTGTGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CGG-----TAGG-TAGGAAT---TTC-T----TTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------T------------T-----------T-------TT---------------------TT---------------TTT-AC-------TC--TG-G-GGT---T--AAA-------A---TATTGACTCG----G-TCGG------GTCACAGGAAACAAAACTA--TTT-TTTCATTTG
Reference ( family-522 ) : TAAGGCCAAA-TGA---AA-A-AA-TA--T-TTT-TGTTT-----CCTGTGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CGG-----TAGG-TAGGAAT---TTC-T----TTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------T------------T-----------T-------TT---------------------TT---------------TTT-AC-------TC--TG-G-GGT---T--AAA-------A---TATTGACTCG----G-TCGG------GTCACAGGAAACAAAACTA--TTT-TTTCATTTG
gi|1 : AAA-TGA---AA-A-AA-TA--T-TTT-TACTTTTGTTCCTGTGACATG----C-T--GA-AAAAA-AAAAATA-GGGT-CTG-----TAGG-TAAGAAT---TTC-T----TCC-CC-TACACCCACCCACCAACCC----CCTTTC-------CATGGTTC---ATAG-----ATCAAAA--TGG-------AGT--------------------G-------G-----------------AGG---------A---------C----------------AAAAAAAAAATAAAAATAAAATAAAACT------------T-----------C-------CT---------------------TTTT-------------TTT-AA-------TC--GG-A-GGT---T--AGA-------T---TATTGGCTTG----G-TAGA------GTTACAGGAAACAAAACTATTTTT-TTTCATTTG
gi|10 : caAAA-CAA---AACA-AA-AA--T-T----GTTT-----CCAACTGCATG----C-C--GG-AAAAA-AAA--TT-GGGT-CAG-----TAGA-TAGCAGG---TA--------TT-TT-T-----------------T----TCT-TC-------CATAGTTC---ATGG-----ATGGAAA--TGGAATTGAAAGG--------------------G-------A-----------------AAA---------A---------A----------------AA------------------------------------------------------------------------------------------------------AC------------G-A-A--------AAA-------AAAATATTCGGTCG----G-----------GTCACAGGAATCAAAACAA--TTT-TTTCATTTGgc
gi|11 : aaTGACATG----C-T--GA-ATACA-AA---TT-TGGT-TGG-----TAGA-TAGGGGT---TTC-TATTATTT-TTAT-----------------T----TTTCTC-------CATGGCTC---ATGG-----TTCGAAA--TGGA------AGC--------------------T-------A-----------------AAG---------A---------C----------------AA-----------------------------------------------------------------------------------AACGAAAAAAAAAAATTT-AC-------TC---G-G-GAT---T--AAG-------A---TATTGACTAG----G-TTGG------GTCAAAGGCAACAAAACTA--TTT-TTTCATCTGgcc
gi|12 : TGAAGCCAAA-TGA---AT-T-AA-T-----------TTT-----CCTGCGACATG----C-T--GG-AAAAA-AA---TT-GGGT-CAT-----TAGG-TATCAGT---TCC-T----TTT-TT-T-----------------C----TCTCTC-------CATGGTTC---Ag
gi|12 : tatcGGCAAAA-TGAGGAAA-A-AA-TA--G-TTT-TGTTT-----CCTaataataaagaaaataagaacaaaaaaggaaacaaaactattttttcctcattttgccgcagtaacagttcctat
gi|13 : tatctgaagccaaatgaattaattttcctgcgacatgctggaaaaaaattgggtcattaggtatcagttcctttttttctctctccatggttcaaataataaagaaaataagaacaaaaaTAAGGCAAAA-TGA---AA-A-AAATAA-T-TTT-TGTTT-----CCTGTGACATG----C-T--AG-GAAAA-AA----T-AGGT-CGG-----AAGG-TAGAAAT---Tgcagtaacagttcctat
gi|13 : aaG-G-GGT---T--AAATATTCAAA---TATTGACTTG----G-TTGG------GTCACAGGAAACAAAACTA--TTT-TTaaaaaaaaaattcaataaaacacgggtgtgggggagtgggggttaaatattcaaatattgacttggttgggtcacaggaaacaaaactattttt
gi|14 : aataaggcaaaatgaaaaaaataatttttgtttcctgtgacatgctaggaaaaaataggtcggaaggtagaaattaaaaaaaaaattcaataaaacacgggtgtgggggagtgAAA-TGA---AA-A-AA-TA--C-TTT-TGTCT-----CCTGTAGCATG----C-T--GG-AAAAA-AA---AT-GGGA-TGG-----TAGA-TAG--------TT-T----GTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATGG-----ATC-AAA--TTG-------ATC--------------------A-------A-----------------AAGTCACAGGAAA---------C----------------AAAACC---------------------A------------T-----------T-------TT---------------------TT---------------TTT-AT-------TT--TG-
gi|15 : ttaatca-AAAAA-AA---AT-ATCT-CGGAAAAATAAG-TAAGAAT---TTC-T----TTT-TT-T-----------------TCTTTTTTCTC-------CATGGTTC---A--------A--AAAA--TGT-------AGA--------------------C-------A-----------------AAA---------A--------------------------------------------------------------------------------------TT---------------------TT---------------TTA-ACAAAAAT-TC-------AAT---A--AAA-------AGT-TTTTGACTCG----GATCGGGTCACCGTCACAGCAAACAAAACTA--TTT-TTTCATccttaattgcagctcatct
gi|16 : tgaaaGGTCAAA-TGA---AA-A-AT-TA--T-TTT-TGTTT-----C-TGT------------------AAAAA-AA---TT-GTGT-CAG-----TAGG-TAGG-TT---TTCAT----TTT-TA-T-----------------T----TTTTGC-------CATTGTTC---ATGG-----AATGAAA--TGG-------AAC--------------------A-------A-----------------AAG---------A---------C----------------
gi|17 : AGGCCAAA-TGA---AA-AAAA-TA--T-TTT-TGTCT-----CCTGTGACATG----C-T--GGAAAAAA-AA---AT-GGGT-TGG-----TAGG-TAGGATT---TTT-T----TTTATTAT-----------------T----ATTCTC-------CATGGGTC---ATGG-----ATCAAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------taaaaaaaaaannnnnnnnnntaaccattgtttctaattacatgttcatgg
gi|18 : TC-------CATAATTC---ATAG-----ATCCAAA--TAG-------AGC--------------------GAAAGACAA-----------------AAG---------A---------G----------------AA-------------------------TAAAGAATAAAAAC-----------T-------TT---------------------TTAAAAAAA--------TTC-AA-------T-----------------AAA-------A---CATTGACTCT----G-TCGG------GTCACA-GCAACAAAACTG--TTT-ATTCATTTGgacaaaaaaaaaataaataaaaa
gi|19 : TCTC-------CATGTTTT---ATGT-----ATCGAAA--TGG-------AGA--------------------G-------A-----------------AAG---------A---------C----------------AA---------------------------------------------------------------------------------ATAAAA-----------TCC-ACCAAAAAATCAATG-GTGGTGGTT--ATA-------A---CATTGCCTCA----A-TAGG------GTGACAGGAAATAATACTA--TTG-TTTCATTTGgccc
gi|2 : CCAAA-TAA---AA-A-AA-TAA-T-TTT-TGTTT-----CCTGTGACCTG----A-A--GG-AAAAA-AA---TT-GGAC-AGG-----CAGG-TTGGAAT---TTC-T----TTT-AT-T-----------------T----TCTTTCTGCGGTTCATGGATCGAAATAG-----AGC-AAA--TAA-------AACTAAAATAAATGTTATAAATAA-------A-----------------AAA---------A---------A----------------AA-------------------------T------------T-----------TAATGATTTT---------------------TT---------------TTT-AGA------TT--TGTG-GGT---TCTAAA-------A---TATTGACTCA----G-TCAG------GTCACAAGAAACAAAACTA--TTT-TTTCGTTTGgcc
gi|20 : TCTC-------CATGTTTT---ATGT-----ATCGAAA--TGG-------AGA--------------------G-------A-----------------AAG---------A---------C----------------AA---------------------------------------------------------------------------------ATAAAA-----------TCC-ACCAAAAAATCAATG-GTGGTGGTT--ATA-------A---CATTGCCTCA----A-TAGG------GTGACAGGAAATAATACTA--TTG-TTTCATTTGac
gi|21 : A--T-TTT-TGTTT-----CCTGTGACATT----C-------------------T-GGGT-C---------GG-TAGGAAT---TTCGTG---TTT-TT-T-----------------T----TCTCTC-------CATGGTTC---ATAG---------------GG-------GG---------------------G-------A-----------------AGG---------G--------------------------------------------------------------------------------------------------------------------------------------------G--TG-G-AGTC--T--TAA-------A---TATTGA-----------CGG------GTCACAGGAAACAAAAATA--CTT-TTgcc
gi|22 : GA---AA-A-AG-TA--T-TTT-CATTT-----C---TGAC-TGGCCCC-T--GA-AAAAAAAA---TA-GGGT-AAG-----TAGA-TA-GAAT---TCC-
gi|23 : -AAAAA-AA---TT-TCCTTCGA-----CATGCTGGGAAT---TT---------T-TT-T-----------------T----TCTTTC-------CATGGTTC---ccccgccccccacccccactctccacccaagaacaaatgaccgttagaagactagaaaa
gi|24 : aaatgaaaaAGGCCAAAATGA---AA-G-AA-TA--T-TTT-TGATT-----CCTGTGACATG----C-T---G-AAAAA-AA---TT-TGGT-CAC-----TAGG-TAGGAAT---TTC-T----TTT-TA-T-----------------T------TCTT-------CATAGTTC---Acaaaatttttaacaaaaaaaaaaaaaattctatttgattcgg
gi|25 : tttT-AN-------NN--NN-N-NNN---N--AAA-------A---TACAGACTCGATCGG-TCGG------GTCACAGGAAACAAAACTA--TTT-TTTCATTTGa
gi|26 : aatgaaaacatgctgAAGGC-AAA-TGA---AA-AAAA-TA--T-TTA-AGTTT-----CCTGTGACATG----C-TTAAA-AAAAA-AA---CT-GGGT-T---------GG-TAGGAAC---TAT-T----TTT-Tgcccgagt
gi|27 : T---T--AAA-------A---TATTGACTTT----G-TCAT------GTTACAGGAAACAATACTA--TTT-TTTCATTc
gi|28 : acaaaagacaaaacaaaattGCCAAA-TGA---AA-A-AA-TAAAT-TTT-TGTTT-----CCTGTGACATG----A-T--GG-AAAAA-AA----T-GTGT-CAG-----TAAG-TAAAAAA---TTC-T----Tggcct
gi|29 : A---AA-A-AA-G------TT-TGTTT-----CTGGTTAGCCC----C-T--GA-AAAAA-AA---ATAGGGT-AGG-----TAGG-TAGG
gi|3 : aAGGCCAAA-AGA---AA-ACAA-AA--A-TTT-TGTTT-----CCTGTGACATG----C-T--GG-GAAAT-AA---C--AGGT-CGA-----TAGG-TAGGAAA---TCC-T----TTT-TT-T-----------------T-----------------CATGGTCC---ATCG-----ATCAAAA--TGG-------AGC--------------------A-------AAAGACAAAAAAAAATTGAAA---------A---------C----------------AA-------------------------T------------CAAATAAAAAAAT-------TG---------------------TT---------------GT---C-------TC--TG-G-GGT---T--AAA-------A---CATTAACTTG----G-TCGA------GTCGCAGAAAACAAAAATA--TAT-TTTCATTcttccacccctctccc
gi|30 : tAGGCCAAA-AAA---AA-A-CA-TT--T-TTT-TGTTT-----CCTGTGACATG----C-T--GA-AAAAA-AT---TT-GGGT-CTG-----TAGG-TA
gi|31 : tc---T--AAA-------A---TATTGACTTG----G-TTGG------TTT-CAGG-----AAACTA--TTTATTTCATTTGa
gi|32 : ttccgtaactgtcagaaAAGTCAAA-TGA---AA-A-AA-TA--T-ATT-TGTTT-----CCTGTGACATG----C-T--GG-ACAAA-AA---TT-GGGT-CAG-----TAgcct
gi|34 : ttACTTG----G-TCGG------ATCATAGGAAAC-AAACTA---TA-TTTCATTTGaat
gi|35 : aaaatcacTCTC-------CATGGTTC---ATGG-----ATCTAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------gcct
gi|36 : ---TACTGACTCG----G-TTTG------GTCACAGGAA-CAAAACTG--TTT-TTTCATTTGaaactatttattc
gi|37 : TGAGGCCAAA-TGA---AA-ATAA-TA--T-TTG-TGTTT-----CATGTGACATA----C-T--Ggtct
gi|4 : GGGCAAA-TGA---TA-A-AA-GA--T-TTT-TGTTTT----CCTGTGGCATG----CTT--GA-AAAAA-AA---CT-GAGC-CAG-----TAGG-TTGGAAT---TTC------TTT-TT-T-----------------T----CCCCTC-------CACGATTC---ATGGATGGAATTGAAAATTGG-------AGT--------------------G-------A-----------------GAG---------AAAAAGAACTC----------------AA-------------------------TAAAAAAAC----T-----------T-------AA---------------------CT---------------CAT-A--------TC--T------T---T--A-A-------A---TATTGACTTG----G-TCGG------GTCATAGGAAACAAAACTA--TTT-TTTC
gi|5 : AGGCCAAA-TGA---AA-A-AA-TA--T-TTT-GGTTT-----CTTGTGACGTG----C-T--GG-AAAAA-A-----T-GGGT-AGG-----TAGG-TAGGAAT---GTC-T----CTT-TT-T-----------------T----TTCCTA-------CATGGTTC---ATGG-----ATTTGAA--TCG-------AGC--------------------A-------A-----------------AAG---------A---------C----------------AAAAAGAAAAAAGAAAAGAAG------T------------T-----------------------------------------------------------TAT-AC-------TC--T----GGT---T--AAA-------A---CATTGACTTG----G-TGGT------GTCACAGGAAACAAAACTA--TTA-TTTCATTTGt
gi|6 : TAAGGCCATA-TGA---AA-A-AA-TA--T-TTT-TGTTT-----CCTATGACATG----C-T--AG-AAAAA-AA---TT-GGGT-TAG-----TAGG-TAGGAAT---TAC-T----TTT-TT-TA----------------T----TGCCTC-------CATGGTTT---ATAG-----ATCGAAA--TTG-------AGC--------------------A-------A-----------------AAG---------A---------C----------------AA-------------------------T------------T-----------T-------TT---------------------TT---------------TTT-AC-------TC--TG-G-AAT---T--AAA-------A---TAATGACTGG----G-TCAG------GTCACAGGAAACAAAACTAT-TTT-TTTCATTTGgcc
gi|7 : AGGCCAAA-TGA---AA-A-AA-TA--TATTTGTGTTT-----CCTGTGAAGTG----C-T--GG-AAAAA--A---TT-TGGT-T----------------AAT---TTT-T----TTT----------------------------------------CATGGTTC---ATGG-----ATCGAAA--TGG-------AGC----------------------------A-----------------AAG---------A---------CAA--------------AA-------------------------TA-----------T-----------A-------TT---------------------TT---------------TTT-A
gi|7 : t-------A-----------------AAA---------AT--------C----------------AA-------------------------TCAA---------T-----------T-------TT---------------------TT---------------TTA-AC-------T---TGTG-GGT---T--AAA-------A---TATTGACTCaaaaatcaaaaaaaaaaaatcaatcaattttttttaacttgtgggttaaaatattgactcacaagaattttttttttt
gi|8 : taggccaaatgaaaaaatatatttgtgtttcctgtgaagtgctggaaaaaatttggttaattttttttcatggttcatggatcgaaatggagcaaagacaaaatatatttttttaaaaaatcaaaaaaaTAAGGTCAAA-TGA---AA-A-AA-TA--T-ATT-TGTTT-----ACAACGACATG----C-T--GC-GAAAA-AA---TT-GGGT-TGA-----TAAG-TAGGAATTTATTC-T----TTT-TT-T-----------------C----TCCCTC-------TATGGTTC---ATGT-----ATCGAAA--TGG-------AGC--------------------G-------A-----------------AAG---------A---------CAAAATAAAAATTCAATAA-------------------------T------------T-----------T-------TG---------------------TT---------------TTG-AC-------AC--AT-G-GGT---T--TAA-------A---TATTacaagaattttttttttt
gi|9 : -T--GA-AATAA-AA---TTTGGGT-CA------TAGG-TAGGAAT---TTC-A----TTT-TA-----------------------------C-------CATGGTTC---TTGA-----ATTGAAA--TGG-------AGA--------------------G-------A-----------------AAG---------A---------C----------------AA-------------------------T------------TAAAC-------T-------TTAAAAATAAAATAAACAAAAACTT---------------TTCGAC-------TA--TT-G-GGT---T--AAA-------A---TATTGACATG----A-TCGG------GTCACAGGGAACAAAACTA--TTT-TTTCATTTGattttttcagttggcct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|33 ): CCTAAACAGTGAATGCACATGGAAATTCATGTCAATAAATTTAAATACAAA