lowQualScore : 99999999999999999999999 1 1 222222 222 11 2222 1 111 444444444444 1111111 1 111 22222 111
lowQualScore : 4 2 3 2 6 2 3 99999999999999999999999 5 5 6 4 88 6 6 0 4 6 888888 3 0 33 4 2 111 55 99 2 66 7 1111 3 0 0 777 4 3 444444444444 8 7777 777 2222222 2 3 77777 6 6666 2 2 2 2 111 77 2 00000 666
lowQualScore : . . . . . . . ....................... . . . . .. . . . . . ...... . . .. . . ... .. .. . .. . .... . . . ... . . ............ . .... ... ....... . . ..... . .... . . . . ... .. . ..... ...
lowQualScore : 0 5 0 5 0 5 0 55555555555555555555555 0 0 0 0 55 0 7 7 0 7 888888 2 2 55 5 5 000 88 00 5 00 0 2222 0 2 0 555 0 2 888888888888 0 0000 111 1111111 9 7 11111 0 1111 8 8 7 7 000 33 7 77777 444
consensus : GGATGCAAAGCAATTGTGTTTTCGCAAATNGATCGATNTTTTAGTATGGNATATATACTGGTGNGTAANTTATTGATTTTTTAAAGAAAATATGTTCGATTTATTTTACATGTTTTACTGCATATATAATTTATAAGGACTGAACTTGANTAAAANGTTCTCCACTAGGTAANCGATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAA-TTAATATCTGAACATACCGGTNTANCAAAATCT----TNTCCGAA-TC---GNTAAATCTTTG---------A--A-ATT--AC-A-TAAAAAAA-------AA-TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG--AAA-AAAA--C-CGCGCCTAATACGTGAGCAGAAACG
Reference ( gi|1 ) : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCTAACGAAAATATGTTCGATTTATTTGACATGTTTTACTGCATATATAATGTGTAAGGACTGAATTTGAATAAAACATTCTCCGCTACGTGAATCATCACCTA------TAATCAAGCTCACATGAAAAAATTGTCCTGAAA-T-AATATCTGAACATACCGGTGTAGCAAAATCT----TTTCTGAA-TC---GATAAATCTTTG---------A--A-ATT--AC-A-TAAAAAAA-------AA-TCAAAT-----CTTCCGTAC----TTATGTATATTGTGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG--AAA-AAAA--C-TGCGCCTAATACGTGAGAATAAACG
gi|2 : GGATGCAAAGCAATTGTGTTTTCGCAAATAGATCGATCTTTTAGTATGGCATATATACTGGTGGGTAATTTAT-----------------------CGATTTATTTTACATGTTTTACTGCATATATAATTTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATT-AATATCTGAACATACCGGTGTAGCAAAATCT----TTTCTTAA-TC---GATAAATCTTTGAAAAATGATA--A-ATA--AC-ATTAAAAAAAT------AA-TGAAAT-----CATCTGTACTTATTTATGTATATCACACATA-CCA-TCTTGAA-ATCTTAAAAGTTG--GG--GAA-AAAA--C-T-CGCCTAATACGTCAGAATAAA
gi|17 : GGATGCAAAGCAATTGTGTTTTCGCAAATTAATGAATATTTTAGTATGGGATATATACTGGTATATAAGTTATTGATTTTTTAAAGAAAATATGTT
gi|3 : GACTGAACTTGATTAAAAGGTTCTCCACTAGGTAAGTGATCAGCTACATGTATAATGGACCTCCCATAAAGAAATTGTCCTGAAA-TTAACATCTTAACATACCTGTCT-TCAAAA-CA----TGTCCAGA-TCACAGTTAAA-CTTTG---------A--A-A--------------AAA-------AG-TGAAAT-----CTTCTGTAC----TTGTGTTTAATGTTCATC-TTT-TCTCTAAGATCTTAAAAATT---AA--AAA-AAAA--TATGTGCATTTTATGTGAtt
gi|5 : aACATGACCAATCACCTG------T---CAGATTCACA-------ATTAT----AAC-T-AATATT----CATAC---TTTAATAAAGTCTAACATGTCCGAGCTT---GTTAGATTTTTA---------ACAA-ATT--ACCG-TGGAAAAA-------CA-TTAAAT-----CTTCTGTAC----TTGTGTAAAATGCATATTTCCTATCTTTAAGATCTTAAAATTT---GG--AAA-AATT--A-TGAGCCTTATACATGATTAAAAACGtttg
gi|4 : ------TAATCAAGCTCACATGAAAAAATTGTCCTGAAA-TTAATATCTGAACATACTGGTGTA-CAAAACTT----TTTCTGAA-TC---GATAAATCTTTG---------A--ACATTTTAC-A-TAAAAAAA-------AAATGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTTGAAGATCTTAAAAGTTGGGGG--AAA-AAAA--A-TGCGCATAATACGTGAGGATAAACG
gi|9 : -ATT--AA-A-AAAAAAAA-------AA-TGAAAT-----CTTCTGTAT----TTATGTATATCTTGCATC-CCT-TCTCGAAGATTTTAAAAGTT---GG--AAA-AAAA--C-CGCGCCGAATACGTGAGTAGAAACG
gi|7 : cT--AC-A-TAAAAAAAAAAAAAGAA-TGAAAT-----CTTCTGTAC----TTATGTATATCGC-CATC-CCT-TCTCGAAGATTTTAAAAGTT---GG--AAATAAAA--C-CGCGCCTAATACGTGATTAGAAACG
gi|8 : --AC-A-TAAAAAAA-------AA-TAAAATGAATTCTTCTGTAC----CTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTTGG-GG--AAA-AAAA--C--ATGCCTAATACGTGAGCAGAAACG
gi|14 : --AC-T-TAAAAAAA-------AA-----AT-----CTACTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GGAAAAA-AAAA--C--GCTCCTAATACGTGAGCAGAAACG
gi|11 : -A-TAAAAAAA-------AA-TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG--AAA-AAAA--A-CGTGCATAATACGTGAGCAGAAACG
gi|10 : attAAAAAAA-------AA-TGAAAA-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG--AAA-AAAA--G-CGCGACTAATACGTGAGCAGAAACG
gi|12 : cataaaaAAAAAAA-------AA-TGAAAT-----CTTCTGTAC----TAATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG--AAA-AAAAAGC--GCGCCTAATACGTGAGTAGAAACG
gi|13 : taaaAAAAAAA-------AA-TGAAAT-----CTTCTGTAT----TTATGTATATTGTGCATC-CTT-TCTCGAAGATCTTAAAAGTT---GGAAAAA-AAAA--C--GCGCCTTATACGTGAGTAGAAACG
gi|15 : aAAAAAAA-------AA-TTAAAT-----CTTCTGTAC----TTATGTATGTCGCGCATC-ACT-TCTCGAAGATCTTAAAAGTT---GG--GAA-AAAA--A-CACGCCTAATACGTGAGCAGAAACG
gi|16 : aAAAAA-------AA-TGAAAT-----CTTCTGTAC----TTATGTTTATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG--GGA-AAAA--A-CGCGCCCAATACGTGAGTAGAAACG
gi|18 : TC-CCT-TCTCAAAGATCTTTAAAGTT---TA--AAA-AAAA--C--GCGCCTAATACGTGAGTAGAAACG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TAAATCATCAATATGTAACCATAATCTTTAAAAAATATCACACAAAAAGGGGTCCCACTAAATATGGACTGAATCTGAATATAGTGATCTAAGGAAAATCTCAAAATTGATCTCTCACCGAGAAATTGTCATGGGA
Alignments
lowQualScore : 222 111111 1111 111 333333333333
lowQualScore : 1 1 1 222 1 888888888888 3 3 2 1 1 2 2 111 999999 1 6 22 3 0 3 1 99 3 7777 1 8 444 1 0 444444444444 6 66 555 2 2 8888888 66666 5555 2 2 666 7 2 8 0
lowQualScore : . . . ... . ............ . . . . . . . ... ...... . . .. . . . . .. . .... . . ... . . ............ . .. ... . . ....... ..... .... . . ... . . . .
lowQualScore : 0 0 0 333 0 777777777777 0 0 0 0 0 5 5 666 222222 0 7 77 8 8 2 0 66 8 0000 0 0 000 0 8 000000000000 7 11 555 7 7 7777777 77777 7777 5 5 999 5 5 3 8
consensus : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCTAA-GAAAATATGTTCGATTTATTTNACATGTTTTACTGCATATATAATNTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATNATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCCGAA-TC---GATAAATCTTTG---------A--A-ATT--AC-A-TAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAAACGCGCCTAATACGTGAGCAGAAACG
Reference ( family-5065 ) : GGATGCAAAGCAATTGTGTTTTCGCAAATNGATCGATNTTTTAGTATGGNATATATACTGGTGNGTAANTTATTGATTTTTTAAAGAAAATATGTTCGATTTATTTTACATGTTTTACTGCATATATAATTTATAAGGACTGAACTTGANTAAAANGTTCTCCACTAGGTAANCGATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTNTANCAAAATCT----TNTCCGAA-TC---GNTAAATCTTTG---------A--A-ATT--AC-A-TAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAACCGCGCCTAATACGTGAGCAGAAACG
gi|1 : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCTAACGAAAATATGTTCGATTTATTTGACATGTTTTACTGCATATATAATGTGTAAGGACTGAATTTGAATAAAACATTCTCCGCTACGTGAATCATCACCTA------TAATCAAGCTCACATGAAAAAATTGTCCTGAAA-TAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCTGAA-TC---GATAAATCTTTG---------A--A-ATT--AC-A-TAAAA-AAA-AA-------TCAAAT-----CTTCCGTAC----TTATGTATATTGTGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAACTGCGCCTAATACGTGAGAATAAACG
gi|10 : AAAA-AAA-AA-------TGAAAA-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAAGCGCGACTAATACGTGAGCAGAAACG
gi|11 : cataaaa-A-TAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAAACGTGCATAATACGTGAGCAGAAACG
gi|12 : attAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TAATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GGAAAA-AAAAGCGCGCCTAATACGTGAGTAGAAACG
gi|13 : taaaAAAA-AAA-AA-------TGAAAT-----CTTCTGTAT----TTATGTATATTGTGCATC-CTT-TCTCGAAGATCTTAAAAGTT---GGAAAA-AAAAACGCGCCTTATACGTGAGTAGAAACG
gi|14 : a--AC-T-TAAAA-AAA-AA-----------AT-----CTACTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GGAAAA-AAAAACGCTCCTAATACGTGAGCAGAAACG
gi|15 : AAAA-AAA-AA-------TTAAAT-----CTTCTGTAC----TTATGTATGTCGCGCATC-ACT-TCTCGAAGATCTTAAAAGTT---GG-GAA-AAAAACACGCCTAATACGTGAGCAGAAACG
gi|16 : aAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTTTATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-GGA-AAAAACGCGCCCAATACGTGAGTAGAAACG
gi|17 : GGATGCAAAGCAATTGTGTTTTCGCAAATTAATGAATATTTTAGTATGGGATATATACTGGTATATAAGTTATTGATTTTTTAAAGAAAATATGTT
gi|18 : TC-CCT-TCTCAAAGATCTTTAAAGTT---TA-AAA-AAAAC-GCGCCTAATACGTGAGTAGAAACGtt
gi|2 : GGATGCAAAGCAATTGTGTTTTCGCAAATAGATCGATCTTTTAGTATGGCATATATACTGGTGGGTAATTTAT-----------------------CGATTTATTTTACATGTTTTACTGCATATATAATTTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCTTAA-TC---GATAAATCTTTGAAAAATGATA--A-ATA--AC-ATTAAAA-AAATAA-------TGAAAT-----CATCTGTACTTATTTATGTATATCACACATA-CCA-TCTTGAA-ATCTTAAAAGTT---GG-GGA-AAAAACTCGCCTAATACGT---CAGAAg
gi|3 : GACTGAACTTGATTAAAAGGTTCTCCACTAGGTAAGTGATCAGCTACATGTATAATGGACCTCCCATAAAGAAATTGTCCTGAAATTAACATCTTAACATACCTGTCT-TCAAAA-CA----TGTCCAGA-TCACAGTTAAA-CTTTG---------A--A-A---------------AAA-AG-------TGAAAT-----CTTCTGTAC----TTGTGTTTAATGTTCATC-TTT-TCTCTAAGATCTTAAAAATT---AA-AAA-AAAAtaaa
gi|4 : a------TAATCAAGCTCACATGAAAAAATTGTCCTGAAATTAATATCTGAACATACTGGTGTA-CAAAACTT----TTTCTGAA-TC---GATAAATCTTTG---------A--ACATTTTAC-A-TAAAAAAAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTTGAAGATCTTAAAAGTTGGGGG-AAA-AAAAATGCGCATAATACGTGAGGATAAACGtatgtgcattttatgtgatttg
gi|5 : TGACCAATCACCTG------TCA--GA-TTCACA-------ATTAT-----AACTAATATT----CATAC---TTTAATAAAGTCTAACATGTCCGAGCTT---GTTAGATTTTTA---------ACAA-ATT--ACCG-TGGAA-AAA-CA-------TTAAAT-----CTTCTGTAC----TTGTGTAAAATGCATATTTCCTATCTTTAAGATCTTAAAATTT---GG-AAA-AATTATGAGCCTTATACATGATTAAAAACG
gi|6 : acaATATGGACTGAATCTGAATATAGTGATCT--A--AGGAAA---ATCTC--A------AAATTGATCTCTCACCGAGAAATTGTCATG
gi|7 : taaatcatcaatatgtaaccataatctttaaaaaatatcacacaaaaaggggtcccactaaT--AC-A-TAAAA-AAA-AAAAAAGAATGAAAT-----CTTCTGTAC----TTATGTATATCGC-CATC-CCT-TCTCGAAGATTTTAAAAGTT---GG-AAATAAAACCGCGCCTAATACGTGATTAGAAACGgga
gi|8 : --AC-A-TAAAA-AAA-AA-------TAAAATGAATTCTTCTGTAC----CTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTTG--GG-GAA-AAAAACATGCCTAATACGTGAGCAGAAACG
gi|9 : -ATT--AA-A-AAAAA-AAA-AA-------TGAAAT-----CTTCTGTAT----TTATGTATATCTTGCATC-CCT-TCTCGAAGATTTTAAAAGTT---GG-AAA-AAAACCGCGCCGAATACGTGAGTAGAAACG
Alignments
lowQualScore : 2222222222222 2222222 1111 111 333333333333
lowQualScore : 0 8888888888888 1 1 0 2 2 44 8 3333333 1 0 0 3 99 3 7777 0 8 444 1 0 444444444444 6 66 555 2 2 8888888 66666 5555 2 2 666 5 2 2 2 0
lowQualScore : . ............. . . . . . .. . ....... . . . . .. . .... . . ... . . ............ . .. ... . . ....... ..... .... . . ... . . . . .
lowQualScore : 7 0000000000000 0 0 2 5 5 22 8 8888888 0 8 8 2 00 8 0000 6 0 000 4 8 000000000000 7 11 555 7 7 7777777 77777 7777 5 5 999 0 5 5 5 8
consensus : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCT-AA-GAAAATATGTTCGATTTATTTNACATGTTTTACTGCATATATAATNTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCCGAA-TC---GATAAATCTTTG---------A--A-ATT--AC-A-TAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-A-CGCGCCTAATACGTGAGCAGAAACG
Reference ( family-5065 ) : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCT-AA-GAAAATATGTTCGATTTATTTNACATGTTTTACTGCATATATAATNTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATNATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCCGAA-TC---GATAAATCTTTG---------A--A-ATT--AC-A-TAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-A-CGCGCCTAATACGTGAGCAGAAACG
gi|1 : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCT-AACGAAAATATGTTCGATTTATTTGACATGTTTTACTGCATATATAATGTGTAAGGACTGAATTTGAATAAAACATTCTCCGCTACGTGAATCATCACCTA------TAATCAAGCTCACATGAAAAAATTGTCCTGAAAT-AATATCTGAACATACCGGTGTAGCAAAATCT----TTTCTGAA-TC---GATAAATCTTTG---------A--A-ATT--AC-A-TAAAA-AAA-AA-------TCAAAT-----CTTCCGTAC----TTATGTATATTGTGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-C-TGCGCCTAATACGTGAGAATAAACG
gi|10 : AAAA-AAA-AA-------TGAAAA-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-G-CGCGACTAATACGTGAGCAGAAACG
gi|11 : cataaaa-A-TAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-A-CGTGCATAATACGTGAGCAGAAACG
gi|12 : attAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TAATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-AGCGCGCCTAATACGTGAGTAGAAACG
gi|13 : taaaAAAA-AAA-AA-------TGAAAT-----CTTCTGTAT----TTATGTATATTGTGCATC-CTT-TCTCGAAGATCTTAAAAGTT---GGAAAA-AAAA-A-CGCGCCTTATACGTGAGTAGAAACG
gi|14 : a--AC-T-TAAAA-AAA-AA-----------AT-----CTACTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GGAAAA-AAAA-A-CGCTCCTAATACGTGAGCAGAAACG
gi|15 : AAAA-AAA-AA-------TTAAAT-----CTTCTGTAC----TTATGTATGTCGCGCATC-ACT-TCTCGAAGATCTTAAAAGTT---GG-GAA-AAAA-A-CACGCCTAATACGTGAGCAGAAACG
gi|16 : aAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTTTATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-GGA-AAAA-A-CGCGCCCAATACGTGAGTAGAAACG
gi|17 : GGATGCAAAGCAATTGTGTTTTCGCAAATTAATGAATATTTTAGTATGGGATATATACTGGTATATAAGTTATTGATTTTTTAAA-GAAAATATGTT
gi|18 : TC-CCT-TCTCAAAGATCTTTAAAGTT---T--AAA-AAAA-A-CGCGCCTAATACGTGAGTAGAAACGtt
gi|2 : GGATGCAAAGCAATTGTGTTTTCGCAAATAGATCGATCTTTTAGTATGGCATATATACTGGTGGGTAATTTAT------------------------CGATTTATTTTACATGTTTTACTGCATATATAATTTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCTTAA-TC---GATAAATCTTTGAAAAATGATA--A-ATA--AC-ATTAAAA-AAATAA-------TGAAAT-----CATCTGTACTTATTTATGTATATCACACATA-CCA-TCTTGAA-ATCTTAAAAGTT---GG-GGA-AAAA-A-CTCGCCTAATACGT---CAGAAg
gi|3 : GACTGAACTTGATTAAAAGGTTCTCCACTAGGTAAGTGATCAGCTACATGTATAATGGACCTCCCATAAAGAAATTGTCCTGAAATTAACATCTTAACATACCTGTCT-TCAAAA-CA----TGTCCAGA-TCACAGTTAAA-CTTTG---------A--A-A---------------AAA-AG-------TGAAAT-----CTTCTGTAC----TTGTGTTTAATGTTCATC-TTT-TCTCTAAGATCTTAAAAATT---AA-AAA-AAAATA-TGTGCATTTTATGTGAtaaa
gi|4 : a------TAATCAAGCTCACATGAAAAAATTGTCCTGAAATTAATATCTGAACATACTGGTGTA-CAAAACTT----TTTCTGAA-TC---GATAAATCTTTG---------A--ACATTTTAC-A-TAAAAAAAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTTGAAGATCTTAAAAGTTGGGGG-AAA-AAAA-A-TGCGCATAATACGTGAGGATAAACGtttg
gi|5 : AACTAATATT----CATAC---TTTAATAAAGTCTAACATGTCCGAGCTT---GTTAGATTTTTA---------ACAA-ATT--ACCG-TGGAA-AAA-CA-------TTAAAT-----CTTCTGTAC----TTGTGTAAAATGCATATTTCCTATCTTTAAGATCTTAAAATTT---GG-AAA-AATT-A-TGAGCCTTATACATGATTAAAAACG
gi|6 : acatgaccaatcacctgtcagattcacaattatATATGGACTGAATCTGAATATAGTGATCT--A--AGGAAAATC-TCA---A-------AATTGATCTCTCACCGAGAAATTGTCATG
gi|7 : taaatcatcaatatgtaaccataatctttaaaaaatatcacacaaaaaggggtcccactaaT--AC-A-TAAAA-AAA-AAAAAAGAATGAAAT-----CTTCTGTAC----TTATGTATATCGC-CATC-CCT-TCTCGAAGATTTTAAAAGTT---GG-AAATAAAA-C-CGCGCCTAATACGTGATTAGAAACGgga
gi|8 : --AC-A-TAAAA-AAA-AA-------TAAAATGAATTCTTCTGTAC----CTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTTG--GG-GAA-AAAA-A-CATGCCTAATACGTGAGCAGAAACG
gi|9 : -ATT--AA-A-AAAAA-AAA-AA-------TGAAAT-----CTTCTGTAT----TTATGTATATCTTGCATC-CCT-TCTCGAAGATTTTAAAAGTT---GG-AAA-AAAA-C-CGCGCCGAATACGTGAGTAGAAACG
Alignments
lowQualScore : 2222222222222 2222222 1111 111 333333333333
lowQualScore : 0 8888888888888 1 1 0 2 2 3 8 3333333 1 0 0 3 99 3 7777 0 8 444 1 0 444444444444 6 66 555 2 2 8888888 66666 5555 2 2 666 5 2 2 2 0
lowQualScore : . ............. . . . . . . . ....... . . . . .. . .... . . ... . . ............ . .. ... . . ....... ..... .... . . ... . . . . .
lowQualScore : 7 0000000000000 0 0 2 5 5 2 8 8888888 0 8 8 2 00 8 0000 6 0 000 4 8 000000000000 7 11 555 7 7 7777777 77777 7777 5 5 999 0 5 5 5 8
consensus : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCT-AA-GAAAATATGTTCGATTTATTTNACATGTTTTACTGCATATATAATNTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCCGAA-TC---GATAAATCTTTG---------A--A-ATT--AC-A-TAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-A-CGCGCCTAATACGTGAGCAGAAACG
Reference ( family-5065 ) : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCT-AA-GAAAATATGTTCGATTTATTTNACATGTTTTACTGCATATATAATNTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCCGAA-TC---GATAAATCTTTG---------A--A-ATT--AC-A-TAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-A-CGCGCCTAATACGTGAGCAGAAACG
gi|1 : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCT-AACGAAAATATGTTCGATTTATTTGACATGTTTTACTGCATATATAATGTGTAAGGACTGAATTTGAATAAAACATTCTCCGCTACGTGAATCATCACCTA------TAATCAAGCTCACATGAAAAAATTGTCCTGAAAT-AATATCTGAACATACCGGTGTAGCAAAATCT----TTTCTGAA-TC---GATAAATCTTTG---------A--A-ATT--AC-A-TAAAA-AAA-AA-------TCAAAT-----CTTCCGTAC----TTATGTATATTGTGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-C-TGCGCCTAATACGTGAGAATAAACG
gi|10 : AAAA-AAA-AA-------TGAAAA-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-G-CGCGACTAATACGTGAGCAGAAACG
gi|11 : cataaaa-A-TAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-A-CGTGCATAATACGTGAGCAGAAACG
gi|12 : attAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TAATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-AGCGCGCCTAATACGTGAGTAGAAACG
gi|13 : taaaAAAA-AAA-AA-------TGAAAT-----CTTCTGTAT----TTATGTATATTGTGCATC-CTT-TCTCGAAGATCTTAAAAGTT---GGAAAA-AAAA-A-CGCGCCTTATACGTGAGTAGAAACG
gi|14 : a--AC-T-TAAAA-AAA-AA-----------AT-----CTACTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GGAAAA-AAAA-A-CGCTCCTAATACGTGAGCAGAAACG
gi|15 : AAAA-AAA-AA-------TTAAAT-----CTTCTGTAC----TTATGTATGTCGCGCATC-ACT-TCTCGAAGATCTTAAAAGTT---GG-GAA-AAAA-A-CACGCCTAATACGTGAGCAGAAACG
gi|16 : aAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTTTATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-GGA-AAAA-A-CGCGCCCAATACGTGAGTAGAAACG
gi|17 : GGATGCAAAGCAATTGTGTTTTCGCAAATTAATGAATATTTTAGTATGGGATATATACTGGTATATAAGTTATTGATTTTTTAAA-GAAAATATGTT
gi|18 : TC-CCT-TCTCAAAGATCTTTAAAGTT---T--AAA-AAAA-A-CGCGCCTAATACGTGAGTAGAAACGtt
gi|2 : GGATGCAAAGCAATTGTGTTTTCGCAAATAGATCGATCTTTTAGTATGGCATATATACTGGTGGGTAATTTAT------------------------CGATTTATTTTACATGTTTTACTGCATATATAATTTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCTTAA-TC---GATAAATCTTTGAAAAATGATA--A-ATA--AC-ATTAAAA-AAATAA-------TGAAAT-----CATCTGTACTTATTTATGTATATCACACATA-CCA-TCTTGAA-ATCTTAAAAGTT---GG-GGA-AAAA-A-CTCGCCTAATACGT---CAGAAg
gi|3 : GACTGAACTTGATTAAAAGGTTCTCCACTAGGTAAGTGATCAGCTACATGTATAATGGACCTCCCATAAAGAAATTGTCCTGAAATTAACATCTTAACATACCTGTCT-TCAAAA-CA----TGTCCAGA-TCACAGTTAAA-CTTTG---------A--A-A---------------AAA-AG-------TGAAAT-----CTTCTGTAC----TTGTGTTTAATGTTCATC-TTT-TCTCTAAGATCTTAAAAATT---AA-AAA-AAAATA-TGTGCATTTTATGTGAtaaa
gi|4 : a------TAATCAAGCTCACATGAAAAAATTGTCCTGAAATTAATATCTGAACATACTGGTGTA-CAAAACTT----TTTCTGAA-TC---GATAAATCTTTG---------A--ACATTTTAC-A-TAAAAAAAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTTGAAGATCTTAAAAGTTGGGGG-AAA-AAAA-A-TGCGCATAATACGTGAGGATAAACGtttg
gi|5 : AACTAATATT----CATAC---TTTAATAAAGTCTAACATGTCCGAGCTT---GTTAGATTTTTA---------ACAA-ATT--ACCG-TGGAA-AAA-CA-------TTAAAT-----CTTCTGTAC----TTGTGTAAAATGCATATTTCCTATCTTTAAGATCTTAAAATTT---GG-AAA-AATT-A-TGAGCCTTATACATGATTAAAAACG
gi|6 : acatgaccaatcacctgtcagattcacaattatATATGGACTGAATCTGAATATAGTGATCT--A--AGGAAAATC-TCA---A-------AATTGATCTCTCACCGAGAAATTGTCATG
gi|7 : taaatcatcaatatgtaaccataatctttaaaaaatatcacacaaaaaggggtcccactaaT--AC-A-TAAAA-AAA-AAAAAAGAATGAAAT-----CTTCTGTAC----TTATGTATATCGC-CATC-CCT-TCTCGAAGATTTTAAAAGTT---GG-AAATAAAA-C-CGCGCCTAATACGTGATTAGAAACGgga
gi|8 : --AC-A-TAAAA-AAA-AA-------TAAAATGAATTCTTCTGTAC----CTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTTG--GG-GAA-AAAA-A-CATGCCTAATACGTGAGCAGAAACG
gi|9 : -ATT--AA-A-AAAAA-AAA-AA-------TGAAAT-----CTTCTGTAT----TTATGTATATCTTGCATC-CCT-TCTCGAAGATTTTAAAAGTT---GG-AAA-AAAA-C-CGCGCCGAATACGTGAGTAGAAACG
blockSeqs : TGATTTTTTAAA T T C C A C CATGTAT A C AG T AACA C ACA A AAAAATGATA C TT AT A T AAAAGAA GAATT TTAT T A GGG A T T G
blockSeqs : . C C A G T C C AA C . . . T ACA . . CG . . . . . . . G A . . .
blockSeqs : . . . . T A T T T . . . A A . . A . . . . . . . . . . . .
blockSeqs : . T . A . . . . T A . . T . . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : A*
originalCons : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCT-AA-GAAAATATGTTCGATTTATTTNACATGTTTTACTGCATATATAATNTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCCGAA-TC---GATAAATCTTTG---------A--A-ATT--AC-A-TAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-A-CGCGCCTAATACGTGAGCAGAAACG
finalCons : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCT-AA-GAAAATATGTTCGATTTATTTNACATGTTTTACTGCATATATAATNTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTA-CAAAATCT----TTTCCGAA-TC---GATAAATCTTTG---------A--A-ATT--AC-A-TAAAA-AAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-A-CGCGCCTAATACGTGAGCAGAAACG
Alignments
lowQualScore : 2222222222222 2222222 2 1111 111 333333333333
lowQualScore : 0 8888888888888 1 1 0 2 2 3 8 3333333 1 3 0 3 4 3 7777 0 8 444 1 0 444444444444 6 99 555 2 2 8888888 66666 5555 2 2 666 5 2 2 2 0
lowQualScore : . ............. . . . . . . . ....... . . . . . . .... . . ... . . ............ . .. ... . . ....... ..... .... . . ... . . . . .
lowQualScore : 7 0000000000000 0 0 2 5 5 2 8 8888888 0 8 8 2 0 8 0000 6 0 000 4 8 000000000000 7 22 555 9 7 7777777 77777 7777 5 5 999 0 5 5 5 8
consensus : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCT-AA-GAAAATATGTTCGATTTATTTNACATGTTTTACTGCATATATAATNTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCCGAA-TC---GATAAATCTTTG---------A--A-A--TTAC-A-T-AAAAAAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-A-CGCGCCTAATACGTGAGCAGAAACG
Reference ( family-5065 ) : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCT-AA-GAAAATATGTTCGATTTATTTNACATGTTTTACTGCATATATAATNTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTA-CAAAATCT----TTTCCGAA-TC---GATAAATCTTTG---------A--A-A--TTAC-A-T-AAAAAAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-A-CGCGCCTAATACGTGAGCAGAAACG
gi|1 : GGATGCAAAGCAATTGTGTTTTCGCAAATTGATCGATATTTTAGTATGGGATATATACCGGTAGATAATTTATTGATTTTCT-AACGAAAATATGTTCGATTTATTTGACATGTTTTACTGCATATATAATGTGTAAGGACTGAATTTGAATAAAACATTCTCCGCTACGTGAATCATCACCTA------TAATCAAGCTCACATGAAAAAATTGTCCTGAAA-TAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCTGAA-TC---GATAAATCTTTG---------A--A-A--TTAC-A-T-AAAAAAA-AA-------TCAAAT-----CTTCCGTAC----TTATGTATATTGTGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-C-TGCGCCTAATACGTGAGAATAAACG
gi|10 : -AAAAAAA-AA-------TGAAAA-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-G-CGCGACTAATACGTGAGCAGAAACG
gi|11 : cataaaa-A-T-AAAAAAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-A-CGTGCATAATACGTGAGCAGAAACG
gi|12 : att-AAAAAAA-AA-------TGAAAT-----CTTCTGTAC----TAATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-AAA-AAAA-AGCGCGCCTAATACGTGAGTAGAAACG
gi|13 : taaa-AAAAAAA-AA-------TGAAAT-----CTTCTGTAT----TTATGTATATTGTGCATC-CTT-TCTCGAAGATCTTAAAAGTT---GGAAAA-AAAA-A-CGCGCCTTATACGTGAGTAGAAACG
gi|14 : aAC-T-T-AAAAAAA-AA-----------AT-----CTACTGTAC----TTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GGAAAA-AAAA-A-CGCTCCTAATACGTGAGCAGAAACG
gi|15 : -AAAAAAA-AA-------TTAAAT-----CTTCTGTAC----TTATGTATGTCGCGCATC-ACT-TCTCGAAGATCTTAAAAGTT---GG-GAA-AAAA-A-CACGCCTAATACGTGAGCAGAAACG
gi|16 : aAAAAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTTTATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTT---GG-GGA-AAAA-A-CGCGCCCAATACGTGAGTAGAAACG
gi|17 : GGATGCAAAGCAATTGTGTTTTCGCAAATTAATGAATATTTTAGTATGGGATATATACTGGTATATAAGTTATTGATTTTTTAAA-GAAAATATGTT
gi|18 : TC-CCT-TCTCAAAGATCTTTAAAGTT---T--AAA-AAAA-A-CGCGCCTAATACGTGAGTAGAAACGtt
gi|2 : GGATGCAAAGCAATTGTGTTTTCGCAAATAGATCGATCTTTTAGTATGGCATATATACTGGTGGGTAATTTAT------------------------CGATTTATTTTACATGTTTTACTGCATATATAATTTATAAGGACTGAATTTGAATAAAACGTTCTCCACTAGGTAAATCATCACCTA------TAATCGAGCTCACATGAAGAAATTGTCCTGAAATTAATATCTGAACATACCGGTGTAGCAAAATCT----TTTCTTAA-TC---GATAAATCTTTGAAAAATGATA--A-A--TAAC-ATT-AAAAAAATAA-------TGAAAT-----CATCTGTACTTATTTATGTATATCACACATA-CCA-TCTTGAA-ATCTTAAAAGTT---GG-GGA-AAAA-A-CTCGCCTAATACGT---CAGAAg
gi|3 : GACTGAACTTGATTAAAAGGTTCTCCACTAGGTAAGTGATCAGCTACATGTATAATGGACCTCCCATAAAGAAATTGTCCTGAAATTAACATCTTAACATACCTGTCTT-CAAAA-CA----TGTCCAGA-TCACAGTTAAA-CTTTG---------A--A-A---------------AAA-AG-------TGAAAT-----CTTCTGTAC----TTGTGTTTAATGTTCATC-TTT-TCTCTAAGATCTTAAAAATT---AA-AAA-AAAATA-TGTGCATTTTATGTGAtaaa
gi|4 : a------TAATCAAGCTCACATGAAAAAATTGTCCTGAAATTAATATCTGAACATACTGGTGTA-CAAAACTT----TTTCTGAA-TC---GATAAATCTTTG---------A--ACATTTTAC-A-TAAAAAAAA-AA-------TGAAAT-----CTTCTGTAC----TTATGTATATCGCGCATC-CCT-TCTTGAAGATCTTAAAAGTTGGGGG-AAA-AAAA-A-TGCGCATAATACGTGAGGATAAACGtttg
gi|5 : AACTAATATT----CATAC---TTTAATAAAGTCTAACATGTCCGAGCTT---GTTAGATTTTTA---------ACAA-A--TTACCG-T-GGAAAAA-CA-------TTAAAT-----CTTCTGTAC----TTGTGTAAAATGCATATTTCCTATCTTTAAGATCTTAAAATTT---GG-AAA-AATT-A-TGAGCCTTATACATGATTAAAAACG
gi|6 : acatgaccaatcacctgtcagattcacaattatATATGGACTGAATCTGAATATAGTGATCT--A--AGGAAAATC-TCA---A-------AATTGATCTCTCACCGAGAAATTGTCATG
gi|7 : taaatcatcaatatgtaaccataatctttaaaaaatatcacacaaaaaggggtcccactaaTAC-A-T-AAAAAAA-AAAAAAGAATGAAAT-----CTTCTGTAC----TTATGTATATCGC-CATC-CCT-TCTCGAAGATTTTAAAAGTT---GG-AAATAAAA-C-CGCGCCTAATACGTGATTAGAAACGgga
gi|8 : AC-A-T-AAAAAAA-AA-------TAAAATGAATTCTTCTGTAC----CTATGTATATCGCGCATC-CCT-TCTCGAAGATCTTAAAAGTTG--GG-GAA-AAAA-A-CATGCCTAATACGTGAGCAGAAACG
gi|9 : -A--TTAA-A-A-AAAAAAA-AA-------TGAAAT-----CTTCTGTAT----TTATGTATATCTTGCATC-CCT-TCTCGAAGATTTTAAAAGTT---GG-AAA-AAAA-C-CGCGCCGAATACGTGAGTAGAAACG