lowQualScore : 444 2
lowQualScore : ... .
lowQualScore : 444 5
consensus : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
Reference ( gi|3 ) : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|9 : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGC
gi|4 : AAGCGATGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|6 : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCATGTCGCCCTATAGTTTGAGCC
gi|1 : AAGCGAAGTGAC---AG-AGAAAAAGGCGACTTTATCGCACATGTCGCCCTCTAGTTTGAGCC
gi|12 : AAGTGAAGTGAT---GG-AGAAAAAAGCGACTTTGTTGCCCACGTCACCCTCTAGTTTGAc
gi|14 : AAGCGAAGTGAT---GG-AGAAAAA-GC-ACTTTGTCCCCCACGTCACCCTCTAGTTTGAGa
gi|15 : AAGCAAAGTAACAATGG-GGAAAA--GTGATTTTGTAGCCCAAGTCATCCTCTAGTT
gi|10 : AGCAAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGC
gi|2 : AGCGAAGTGAC---GGGAAAAAAAAGCGACTTTGTCGCCCACGTCGCCCTTTAGTTTGAGCC
gi|5 : AGCGAAGTGAT---GG-AGAAAAAAGCGACTTTGTCACCCATGTCGCCCTTTAGTTTGAGCCc
gi|8 : AGCGAAGTGAC---CG-AGAAAAAAGCGACTTCGTCACCCACGTCGCCCTCTAGTTTAAGCCc
gi|7 : AGCAATGTGAA---GG-GAAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|17 : AGCAAAGTGAC---GA-AGAAAAAAGCTACTTTGTCGCCc
gi|11 : GCAAAGTGAC---AG-AGAAAACAGTGACTCTGTCGCCAAAGGAGTCTTCTAGTTTGAGC
gi|13 : CGAAGTGAC---AG-AAAAAAAAGCAACTTTGTCGCCCACGTCGCCGTCTAGTTTGAGCCt
gi|16 : GTGAC---AT-AGAAAATAGCAACTCTGTCACCC---------TTTAGTTTGAGCCc
Alignments
lowQualScore : 444 2
lowQualScore : ... .
lowQualScore : 111 4
consensus : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
Reference ( family-506 ) : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|1 : AAGCGAAGTGAC---AG-AGAAAAAGGCGACTTTATCGCACATGTCGCCCTCTAGTTTGAGCC
gi|10 : AGCAAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCc
gi|11 : GCAAAGTGAC---AG-AGAAAACAGTGACTCTGTCGCCAAAGGAGTCTTCTAGTTTGAGC
gi|12 : AAGTGAAGTGAT---GG-AGAAAAAAGCGACTTTGTTGCCCACGTCACCCTCTAGTTTGAt
gi|13 : CGAAGTGAC---AG-AAAAAAAAGCAACTTTGTCGCCCACGTCGCCGTCTAGTTTGAGCCa
gi|14 : AAGCGAAGTGAT---GG-AGAAAAA-GC-ACTTTGTCCCCCACGTCACCCTCTAGTTTGAGc
gi|15 : AAGCAAAGTAACAATGG-GGAAAA--GTGATTTTGTAGCCCAAGTCATCCTCTAGTT
gi|16 : GTGAC---AT-AGAAAATAGCAACTCTGTCACCC---------TTTAGTTTGAGCC
gi|17 : tcaatAGCAAAGTGAC---GA-AGAAAAAAGCTACTTTGTCGCCc
gi|2 : AGCGAAGTGAC---GGGAAAAAAAAGCGACTTTGTCGCCCACGTCGCCCTTTAGTTTGAGCC
gi|3 : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCCc
gi|4 : AAGCGATGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|5 : AGCGAAGTGAT---GG-AGAAAAAAGCGACTTTGTCACCCATGTCGCCCTTTAGTTTGAGCC
gi|6 : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCATGTCGCCCTATAGTTTGAGCCc
gi|7 : AGCAATGTGAA---GG-GAAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|8 : AGCGAAGTGAC---CG-AGAAAAAAGCGACTTCGTCACCCACGTCGCCCTCTAGTTTAAGCCc
gi|9 : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGC
Alignments
lowQualScore : 444 2
lowQualScore : ... .
lowQualScore : 111 4
consensus : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
Reference ( family-506 ) : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|1 : AAGCGAAGTGAC---AG-AGAAAAAGGCGACTTTATCGCACATGTCGCCCTCTAGTTTGAGCC
gi|10 : AGCAAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCc
gi|11 : GCAAAGTGAC---AG-AGAAAACAGTGACTCTGTCGCCAAAGGAGTCTTCTAGTTTGAGC
gi|12 : AAGTGAAGTGAT---GG-AGAAAAAAGCGACTTTGTTGCCCACGTCACCCTCTAGTTTGAt
gi|13 : CGAAGTGAC---AG-AAAAAAAAGCAACTTTGTCGCCCACGTCGCCGTCTAGTTTGAGCCa
gi|14 : AAGCGAAGTGAT---GG-AGAAAAA-GC-ACTTTGTCCCCCACGTCACCCTCTAGTTTGAGc
gi|15 : AAGCAAAGTAACAATGG-GGAAAA--GTGATTTTGTAGCCCAAGTCATCCTCTAGTT
gi|16 : GTGAC---AT-AGAAAATAGCAACTCTGTCACCC---------TTTAGTTTGAGCC
gi|17 : tcaatAGCAAAGTGAC---GA-AGAAAAAAGCTACTTTGTCGCCc
gi|2 : AGCGAAGTGAC---GGGAAAAAAAAGCGACTTTGTCGCCCACGTCGCCCTTTAGTTTGAGCC
gi|3 : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCCc
gi|4 : AAGCGATGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|5 : AGCGAAGTGAT---GG-AGAAAAAAGCGACTTTGTCACCCATGTCGCCCTTTAGTTTGAGCC
gi|6 : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCATGTCGCCCTATAGTTTGAGCCc
gi|7 : AGCAATGTGAA---GG-GAAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|8 : AGCGAAGTGAC---CG-AGAAAAAAGCGACTTCGTCACCCACGTCGCCCTCTAGTTTAAGCCc
gi|9 : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGC
blockSeqs : AAT G
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons :
originalCons : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
finalCons : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
Alignments
lowQualScore : 444 2
lowQualScore : ... .
lowQualScore : 111 4
consensus : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
Reference ( family-506 ) : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|1 : AAGCGAAGTGAC---AG-AGAAAAAGGCGACTTTATCGCACATGTCGCCCTCTAGTTTGAGCC
gi|10 : AGCAAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCc
gi|11 : GCAAAGTGAC---AG-AGAAAACAGTGACTCTGTCGCCAAAGGAGTCTTCTAGTTTGAGC
gi|12 : AAGTGAAGTGAT---GG-AGAAAAAAGCGACTTTGTTGCCCACGTCACCCTCTAGTTTGAt
gi|13 : CGAAGTGAC---AG-AAAAAAAAGCAACTTTGTCGCCCACGTCGCCGTCTAGTTTGAGCCa
gi|14 : AAGCGAAGTGAT---GG-AGAAAAA-GC-ACTTTGTCCCCCACGTCACCCTCTAGTTTGAGc
gi|15 : AAGCAAAGTAACAATGG-GGAAAA--GTGATTTTGTAGCCCAAGTCATCCTCTAGTT
gi|16 : GTGAC---AT-AGAAAATAGCAACTCTGTCACCC---------TTTAGTTTGAGCC
gi|17 : tcaatAGCAAAGTGAC---GA-AGAAAAAAGCTACTTTGTCGCCc
gi|2 : AGCGAAGTGAC---GGGAAAAAAAAGCGACTTTGTCGCCCACGTCGCCCTTTAGTTTGAGCC
gi|3 : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCCc
gi|4 : AAGCGATGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|5 : AGCGAAGTGAT---GG-AGAAAAAAGCGACTTTGTCACCCATGTCGCCCTTTAGTTTGAGCC
gi|6 : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCATGTCGCCCTATAGTTTGAGCCc
gi|7 : AGCAATGTGAA---GG-GAAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGCC
gi|8 : AGCGAAGTGAC---CG-AGAAAAAAGCGACTTCGTCACCCACGTCGCCCTCTAGTTTAAGCCc
gi|9 : AAGCGAAGTGAC---GG-AGAAAAAAGCGACTTTGTCGCCCACGTCGCCCTCTAGTTTGAGC