lowQualScore : 111111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 1 111111 1111 111 11111111 6666666666666666666666666666666666666666666666666 111111 000000000000000000000000000000000000000 11 0000000000000000000000 111111 1 22222 11 11 1 2222222 222222 44444444444444 1111 44444444444444444444444444 11
lowQualScore : 6 6 1 4 8 4 00 111111 5 444 55 4 2 1111 55 99 111 4 55 2 77777777 2 3333333333333333333333333333333333333333333333333 1 888 3 2 999999 3 2 555555555555555555555555555555555555555 44 77 00 5 1 5 1 9999999999999999999999 3 66 888888 4 0 0 6 00000 11 6 11 6 5 6 2 6666666 3 2 3 3 55 5 777777 99 88888888888888 4444 99999999999999999999999999 66 2 7
lowQualScore : . . . . . . .. ...... . ... .. . . .... .. .. ... . .. . ........ . ................................................. . ... . . ...... . . ....................................... .. .. .. . . . . ...................... . .. ...... . . . . ..... .. . .. . . . . ....... . . . . .. . ...... .. .............. .... .......................... .. . .
lowQualScore : 0 0 8 7 7 0 66 555555 6 555 55 4 2 4444 11 44 000 0 55 3 77777777 3 7777777777777777777777777777777777777777777777777 7 222 3 5 222222 0 5 000000000000000000000000000000000000000 00 99 44 7 4 7 7 3333333333333333333333 2 77 222222 7 8 2 0 00000 00 0 00 0 0 0 5 0000000 2 0 2 5 88 6 888888 22 99999999999999 2222 33333333333333333333333333 77 5 0
consensus : NNNATAGATAGATANATTATTTTATTCCTCCATTCAGGAGAGCATA-CGATACAAT------ACAAACATTTAAACAGAAC-GTCA--TATATAAGTATTTG--AAAACAACATGATA-AAAGTCAGCAAAATA---GTGCAA-A--AACAGAATACA------ATAATTGTAGAATTACAATAGATTGTACAGA----ATTA---------CAG--------------TAGAAGAAA-AAG--CATGACA-GTATTTTATCATA------ATTTTGATTGT-----A-----T-TGCA-TA-----A--TT---------TTCAGACCAAAC--ATAT-TTATCTAGATTATG-TTATAACACCTCAA-ATGTAATATATA-----TAT-TGCCTTACCGAAAATAAAATAAAATCGAAAC----AATGCAAGACAAGTAACTNATAGGTGAAATATTATTTAACATATGTTATAGCATTCGACCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATGATATGGTANTA----T--ATGGTCAAATGGAACTTAATGTAAAAGNATATTATACAA-----GAA--ATACATAC------GA------ACGCACG----CACGC----------AC--------------GTACGCATGCACGCACGCANTCACGCATAT
Reference ( gi|2 ) : TACACAGACAGTTATATTATTTTATTCCTCCATTCAGGAGGGCATA-TGATACAAT------ATAAGCATTTAAACAGAAC-GTCA--TATATAAGTATTTG--AGAACAACATGATA-AAAGTCGGCAAAATA---GTGCAA-A--AACAGAATATA------ATAATTGTAGAATTACAATAGATTGTACAGA----AGTA---------TAG--------------TAGAAAAAAAAAA--CATGACA-GTATTTTATCATA------ATTTTGATTGT-----A-----T-T-----------A--TT---------TTCAGACCTAAC--ATAT-TTATCTAGATTATG-TTATAACACCTCAA-ATGTAATATATAAAAATTATATGCCTTACCGAAAATAAAATAAAATCGAAAC----AGTGCAAGACAAGTAACTAATAGGTGAAATATTATTTAACATATTTTACAGCATTCGACCGTTTCATAC-----GT--TTGTCTTGCC-AAAATCGAAAATGCGAGACGAAAGGTCACTAGCAAGCGGGATAGTGGACATAAATGATATGGTACTA----T--ATGGTCAAATGGAACTCAATGTAAAAATATATTATACAA-----TAA--ATACATAC------GA------ACACACG----CACGC----------AC--------------GTACGCATCCATGCACGCAATCACGCATAT
gi|20 : ATAGATAGTT----TCTTTTATTCCTCCATTCAGGAG
gi|4 : agAGATAGATAGGTTCTTTTATTCCTCCATTCAGAAGAGCATA-TGATGAAAT------ACATGCATTTAAACAGAAC-GTCA--TATATAAGTATTTA--AAAACAACACGATA-AAAGT---------------GCAATA--AACAGAATACATGTATGATAATTTTAGAATTACAATAGATTGAACAGA----ATTA---------TAG--------------TAGAAA----AAG--CATTGCA------------------------------------A-----T-G-----------A--TT---------TTCAGACCAAAC--ATTT-TTATCTAGATTATG-TTATAACACCTCAA-ATGTTATATATA-----------CTTTACCGACAATAAAATTAAATCGAAAC----AATGCAAGGCAAGTAACTTAAAGGTGAAATATTATTTAACATATGTTATAGCATTTGGCCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAACGGGATATTGGACATTAATGATATGGTCATATAATT--ATGGTCAAATGGAACTTAATGTAAATATATATTATACAA-----GAA--ATGCATAC------AA------GTACtagcctgtgtatttaaaactattacatggtattagtaaa
gi|12 : AGATAAATAGATTCTTTTATTCCTCCATTTAGGAGAGCAAA-TGATACAAT------ACAAGCATTTAAACAGAAC-GTCA--TATATATGTATTTG--AAAACAACATTATA-AAAATCAGCAAAATA---GTGCAA-A--AACAGAATATA------ATTATTGTAGAATTACAATAGATTGTACATA----ATTA---------CAG--------------g
gi|5 : AGATATATTATTTTACTCCTCCATTCAGGAGAGCATA-CATTATAAT------ACAAACATTTAAACAGACA-GT----TATATAAGTGTTTG--AAAATAACATATTT-AAAGTCAGCAAAATA---GTGCAA-A--A-CAGAACA--------ATAATTGTAGAATTATAAATGAGTGTACAGA----A-TA---------TAAGAACTATAATACATTAGATGGAATATG--CATG-CACGTATATCCTCATATTGGAAATTTCGCTT-T-----A-----T-T-----------ACATTGTAATAACATTCAGACAAAAC--A-ACATTATTTAGAATATG-TTATAACACC-CAACA---AGTACATA-----CGTTTGTCCTACCG-----------AAATCGAAAC-----------------TAACTGATAGGCTAAACATT
gi|15 : AGATAGATTATTTTATTCCTTTATTCAGGAGTTCATA-TGATACTAT------AAAAACATTTAAACAGACA-GTCA--TAT-----------------CATCATGATA-AAAAATAGCAAAATA---GTG--A-A--AACAtgacaaaggcacatggttaaatcgaaatcggatattgctgtataaaacatgctatgtacatgtata
gi|7 : taagtTATAATATTTTATTCTTCCATTCAGGAAAGCATA-CAGTACA--------ATAAACATTTGA----AAT-GTTA---AT--------------GATCAAAATAGTACAAAATCAG---AATAC--ATGT---A--TACTG--TATA------GTTATTACAGAATTACAAcacacacgcacgcat
gi|13 : ATATTATTTTATACCACCGTTCTAGATAGTAAA-CAATATAAT------ACAAACAGTTAAA---AACAGGCAATCATATAAGTATTTA--AACAAAACATGTT-----GT--ACAGAATATATTTACAG-AACAGTAGAATATG------ATAatatgtcttgcttattatacatattacttatagcactgaataatatgcatgcaatatgttaagacatccttataaattatgtaaaacaggtgcactggactaattttcagatatacatgtacaaggaaaagtgctttataatttagattatattttagcacccaccgggaatacaattatttttgctttaccgaattgaaaatgtgactcaattgataagtgaaatat
gi|19 : tagaaATTTTATTCCTCTATTCAGGAGGTCATAGTATTACAATAAAATGACAAACA--TACACAGAGC-G-CA--TGT-TAAtgaacttattataaaacatcattataat
gi|1 : agaccTTTTATTCCTCCAATCAAGAGAGCATA-TGATACAAT------ACAAGCATTTAAATAGAAC-GTCG--TATATAAGTATTTG--AAAACAACATGATA-AAAGTCAGCAAAATA---GTGCAA-A--AACAGAATACA------ATTATTGTAGAGTTACAATAGATTGTACAGA----ATTA---------CAA--------------TA-AAAAAAAGTATTCATGACA-G--TTTTATCACA------CTTTTGATTGTGATACA-----T-TGCAATA-----A--TT---------TTCAGACCAAAC--ATGT-TTATCTAGATTATA-TTATAACACCTCAA-ATGTAATA---------TATATGCCTTACCGAAAATAAAATAAAATCGAAACAACGAATGCAAGACAAGTAACTTATGGGTGAAATATTATTCAACATATTTTATATCATTCGACCGTTTCATACCAAAAATCGTTGTCTTACCAAAAATCGAAAATGTAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATGATATGGTACTA----T--ATGGTCAAATGGAACTTAATGTAAAAAGATATGATACAA-----GAA--ATACATACATATAGGA------ATGCACG----CACAC----------AC--------------ATACGCATGCAGGCATGCAGTCACGCATAT
gi|8 : TTTTATTCCTCCATTCAGGAGAGCTTA-TAATACAAT------ACAAACATTTAAACAGAGC-GTCA--TATATAAGTATTTGGAAAAAAAACATGATA-AAAGTCAGCAAAATA---GTGCAA-A--AACAAAATACA------ATAGTTGTAGAATTACAACAGATTGTACAGA----ATTA---------TAG--------------TAG----AAAAAA--CATGACA-GTATTTTTTCATA------ATTTTGATTGT-----G-----T-TACATTGCAATAA--TT---------TTCAGACCAAAC--ATAT-TTATCTAGATTATG-TTATAACACCTCAA-ATGTAA-----------TATATGCCTTACCGAAAATAAAATAAAATCGAAAC----AGTGCAAGACAAGTAACTAAt
gi|9 : tagagtcATTCTTCCACTCAGGAG-----------AAAAT------ACAAGCATTTAAACAGATA-ATCA--TATACA--TATTAG--CAAATAACATGATT-AAAGTCATCAAAATT---GTGCAA-A--A-CAGAACATA------ATAGTTGTAGAATTACAATAGAATGTACAGAATTGAATAATTACATTCTAG--------------TAG----AATAAG--CATGACA-GTATTATAT-ATA------ATTATACTTGT-----A-----TAT-----------A--TTA--------ATAATATATAATTAATAC-CTATGTAG-TTATACTTATA
gi|3 : ttgtaagtaattgtataaattcagagcaatacggtgATATAAGTCTTTG--CAAACAACACTATA-AAAGTCAGCAAAATA---GTGCAA-A--AACCGAATA-----------------GAATTACAATAGATTGTACATA----ATTA---------CAG--------------TAGAAGAAG------CATGATA-GTATTTTATCATA------ATTTTGATTGT-----AATACAT-TGCAATA-----A--TT---------TTCAGACCAAAC--ATAT-TTATCTAGATTATG-TTGTAACACCTCAA-CTGTAATATA-----------TGCCTTATCGAAAATAAAAAAAATTCGAAAC----AATGCAAGACAAGTAACTAATGGGTGAAATATTATTTAACATGTGGTGTAGCATTCGACCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGTATAACGAAAGGTAACTGGCAAGCGGGAAAGTGGACATAAATGATATGGTAATA----T--ATGGTCAAATGGAACTTAATGTTAAATGATATTATACAA-----GAA--ATACATACATATAAGAACACACACACACG----CACGC----------ACAAGCACATATGCATGCACGCACGCATGCACGCAGTCACGCATATtataattgtacttgtaatacat
gi|18 : AGACGAAAT--ACCT-TCATTTGGCTTATG-TTATAACTCCCCAC-CT-----ATATACTAATT---TGCATTACCGAAA-----------TCAAAAC----AACGCAAGACACGTAACTtcgc
gi|17 : tgAGACAAATAACTGTTAGATAAAATATT---TAACATCTGTTATAGCATCCAACCATTCTATAC-----GT--TTGTCTTACC-GAAATCGAACATTCAAGAC
gi|5 : gAACATTATTTAGAATATGTTATAACACCCAACAAGTACATAC-----GT--TTGTCCTACC-GAAATCGAAAagt
gi|16 : agatatattattttactcctccattcaggagagcatacattataatacaaacatttaaacagacagttatataagtgtttgaaaataacatatttaaagtcagcaaaatagtgcaaaacagaacaataattgtagaattataaatgagtgtacagaatataagaactataatacattagatggaatatgcatgcacgtatatcctcatattggaaatttcgctttattacattgtaataacattcagacaaaacACTA----TTAATGGCGGAATGG---TCGG-----AAGCATAATGCATAA-----TAATGATACATTA------GA------ATACATG----TACGC----------AC--------------GTACACATGCGCACACGCACTTACGCACActaactgataggctaaacatttgacaaaggcacatggttaaatcgaaatcggatattgctgtataaaacatgctatgtacatgtata
gi|6 : AAAGTACAC-ACACAA------AC--ACACACAC------AA------ACGCACG----CGTGCGCGCACATGTAC--------------GTACGCATGCACGCACGCAcaattacgcacagat
gi|10 : aaagtgacaacaattaggacaatacatctaacaggagatgaagtattcaaaggatatatttttcataaaactgcataaacTACAAACTACTGA--GCACATAC--------------ACACACG----CACGC----------AC--------------GCACGCA---ATACACACATACACGCATcatggtatggacagagcagtatcaataatcataacaattgacgtaaggactgtcagcaaacagtttaaacgtatccggtgtaatcacaacaatacaattttcggtaatactgttaataaacttattgacgaatgatgcatattttatgagcatttatcgacaaatatataggtcatttaattttgaaacatcgttttcatcaatggacatgatacaaat
gi|11 : aaacgtgaaattaatatactaaatgagcaagaagtttgatatcgatcataacaccacgCATGC------GC------ACGTACGATTGCACAC----------AC--------------ATAAGCATGCACACACGCAATCACACATATgcagacacagacacatgagttctttagaccatgtcaaaaagaataggataccatacaataatgtatataaaaacaccatataaactgagtgtatt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CAAAAAATAATATGTATATACTTGAATGAATTTCATGATCAATATTACATTATTATGTATTCGGTGACGATGCGTCACTATCAGATCCACACACACACACATATGCATGCACGCACACATGCACACACACAC
Alignments
lowQualScore : 11111 11111111 2222222222222 111111 111111 1111 333333333333333333 333333333333333 22222 555555555555 22222222222 11111 1111 44444444444444444444444444 1111111111 111111
lowQualScore : 1 0 11111 3 1 3 55 66 11 1 55 4 3 0 88888 2 66666666 4444444444444 666 5 33 888888 5 1 1 0 666666 2222 777777777777777777 2 5 1 111111111111111 777 9 22222 4 4 1 222222222222 99999999999 1 9999 4 33 1 66666 99 6 1 0 8 99 7777 0 8 6 33 1 6 77 11111111111111111111111111 7777 55 7777777777 333333 0 666
lowQualScore : . . ..... . . . .. .. .. . .. . . . ..... . ........ ............. ... . .. ...... . . . . ...... .... .................. . . . ............... ... . ..... . . . ............ ........... . .... . .. . ..... .. . . . . .. .... . . . .. . . .. .......................... .... .. .......... ...... . ...
lowQualScore : 0 6 77777 6 0 6 00 22 55 2 00 0 4 9 11111 0 11111111 4444444444444 444 0 33 111111 7 7 6 7 444444 1111 777777777777777777 5 0 0 222222222222222 888 0 22222 4 6 9 000000000000 99999999999 9 4444 6 88 0 77777 22 7 7 8 0 44 0000 8 0 7 77 4 7 99 55555555555555555555555555 7777 55 5555555555 000000 7 222
consensus : NNNACAGATAGATAGATTATTTTATTCCTCCATTCAGGAG-----AGCA-TACGATACAAT-ACAAGCATTTAAA--CAGANCGTCATATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAT-------------TACA--GTAGAAGAAAAA-G----CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----TTGC-AATAATTTTCAGACCAAACA-TAT---------------TTAT---CTAGATTATGTTATAACACCTCA-----A-ATGTAATATA-TA-----T-T-TGCCTTACCGAAAATAAAATAAAATCGAAAC----AATGCAAGACAAGTAACTGATAGGTGAAATATTATTTAACATATGTTATAGCATTCGACCGTTTCATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTANTA----TATGGTCAAAT-GGAACTTAATGTA-AAAANATATTATACAAGAA--ATACATAC------GA----------AC------GCACG----CAC--GC----------ACG-----TACGCATGCACGCACGCANT-CACGCATAT
Reference ( family-503 ) : NNNATAGATAGATANATTATTTTATTCCTCCATTCAGGAG-----AGCA-TACGATACAAT-ACAAACATTTAAA--CAGAACGTCATATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAT-------------TACA--GTAGAAGAAAAA-G----CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----TTGC-A-TAATTTTCAGACCAAACA-TAT---------------TTAT---CTAGATTATGTTATAACACCTCA-----A-ATGTAATATA-TA-----TAT-TGCCTTACCGAAAATAAAATAAAATCGAAAC----AATGCAAGACAAGTAACTNATAGGTGAAATATTATTTAACATATGTTATAGCATTCGACCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTANTA----TATGGTCAAAT-GGAACTTAATGTA-AAAGNATATTATACAAGAA--ATACATAC------GA----------AC------GCACG----CAC--GC----------ACG-----TACGCATGCACGCACGCANT-CACGCATAT
gi|1 : TTTTATTCCTCCAATCAAGAG-----AGCA-TATGATACAAT-ACAAGCATTTAAA--TAGAACGTCGTATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATT-ATTGTAGAGTTACAATAGATTGTACAG--------AAT-------------TACA--AT--AAAAAAAA-GTATTCATG-ACAG--TTTTATCACA------CTTTTG----ATTGTGATACA-----TTGCAA-TAATTTTCAGACCAAACA-TGT---------------TTAT---CTAGATTATATTATAACACCTCA-----A-ATGTAATATA-TA---------TGCCTTACCGAAAATAAAATAAAATCGAAACAACGAATGCAAGACAAGTAACTTATGGGTGAAATATTATTCAACATATTTTATATCATTCGACCGTTTCATACCAAAAATCGTTGTCTTACCAAAAATCGAAAATGTAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTACTA----TATGGTCAAAT-GGAACTTAATGTA-AAAAGATATGATACAAGAA--ATACATACATATAGGA----------AT------GCACG----CAC--AC----------ACA-----TACGCATGCAGGCATGCAGT-CACGCATAT
gi|10 : ACGTAC------AA----------ACTACTGAGCACA----TAC--AC----------AC-------ACGCACGCACGCACGCAATACACACATAt
gi|10 : aaacgtgaaattaatatactaaatgagcaagaagtttgatatcgatcataacacc--ATACACAC------------------AC------GCACG----CAC--GC----------ACGCAATACACACATACACGCATGCAGA-CACcacgcatgcagacacagacacatgagttctttagaccatgtcaaaaagaataggataccatacaataatgtatataaaaacaccatataaactgagtgtatt
gi|11 : aaacgtgaaattaatatactaaatgagcaagaagtttgatatcgatcataacaccacgtacaaactactgagcacCATGC------GC----------AC------GTACGATTGCAC--AC----------ACA-----TAAGCATGCACACACGCAAT-CACACATATagacacatgagttctttagaccatgtcaaaaagaataggataccatacaataatgtatataaaaacaccatataaactgagtgtatt
gi|12 : atatcatcatgataaaaaatagcaaaatagtgaaaacacacacacgcacgAGATAAATAGATTCTTTTATTCCTCCATTTAGGAG-----AGCA-AATGATACAAT-ACAAGCATTTAAA--CAGAACGTCATATATATGTATTTG--AAAACAACATTATAAAAATCAGCAAAATAGTGCAA-AAACAGAATATA-ATT-ATTGTAGAATTACAATAGATTGTACAT--------AAT-------------TACA--Gtcgcgcgcgctctatgtgggtgttgtttagatcatgctgtccagaacattaattaattaatttccaaaatgcgttactgtccat
gi|13 : TAGAAATATTATTTTATACCACCGTTCTAGAT-----AGTA-AACAATATAAT-ACAAACAGTTAAAAACAGGCAATCATATA--AGTATTTA--AACAAAACATG
gi|14 : C------ACACA----CAC--AC----------ACA-----TATGCATGCACGCACACATG-CACACACAttgtacagaatatatttacagaacagtagaatatgatatgaacttattataaaacatcattataat
gi|15 : caaaaaataatatgtatatacttgaatgaatttcatgatcaatattacattattatgtattcggtgacgatgcgtcactatcagatcTAAGTAGATAGATTATTTTATTCCTTTATTCAGGAG-----TTCA-TATGATACTAT-AAAAACATTTAAA--CAGACAGTCATAT-----------------CATCATGATAAAAAATAGCAAAATAGTG--A-AAACAcac
gi|16 : AAGCATAATGCATAATAATGATACATTA------GA----------AT------ACATG----TAC--GC----------ACG-----TACACATGCGCACACGCACT-TACGCACAcacacacgcacgcat
gi|17 : actattaatggcggaatggtcggAGACAAATAACTGTTAGATAAAATATT---TAACATCTGTTATAGCATCCAACCATTCTATAC-----GT--TTGTCTTACC-GAAATCGAACATTCAAGACcaattacgcacagat
gi|18 : gAGACGAAATA-CCT---------------TCAT---TTGGCTTATGTTATAACTCCCCA-----C-CT---ATATACTA-----ATT-TGCATTACCGAAA-----------TCAAAAC----AACGCAAGACACGTAACTagt
gi|19 : tgAGACCATTTTATTCCTCTATTCAGGAGGTCATAGTATTACAATAAAATGACAAACA--TACA--CAGAGCG-CATGT-TAA
gi|2 : ACAGACAGTTATATTATTTTATTCCTCCATTCAGGAG-----GGCA-TATGATACAAT-ATAAGCATTTAAA--CAGAACGTCATATATAAGTATTTG--AGAACAACATGATAAAAGTCGGCAAAATAGTGCAA-AAACAGAATATA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAG-------------TATA--GTAGAAAAAAAA-AA---CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----TT-------ATTTTCAGACCTAACA-TAT---------------TTAT---CTAGATTATGTTATAACACCTCA-----A-ATGTAATATA-TAAAAATTATATGCCTTACCGAAAATAAAATAAAATCGAAAC----AGTGCAAGACAAGTAACTAATAGGTGAAATATTATTTAACATATTTTACAGCATTCGACCGTTTCATAC-----GT--TTGTCTTGCC-AAAATCGAAAATGCGAGACGAAAGGTCACTAGCAAGCGGGATAGTGGACATAAATG-ATATGGTACTA----TATGGTCAAAT-GGAACTCAATGTA-AAAATATATTATACAATAA--ATACATAC------GA----------AC------ACACG----CAC--GC----------ACG-----TACGCATCCATGCACGCAAT-CACGCATAT
gi|20 : tacAGATAGATAGTTTCTTTTATTCCTCCATTCAGGAGT----AGC
gi|3 : ATATAAGTCTTTG--CAAACAACACTATAAAAGTCAGCAAAATAGTGCAA-AAACCGAATA-------------GAATTACAATAGATTGTACAT--------AAT-------------TACA--GTAGAAGAA----G----CATG-ATAGTATTTTATCATA------ATTTTG----ATTGT-----AATACATTGC-AATAATTTTCAGACCAAACA-TAT---------------TTAT---CTAGATTATGTTGTAACACCTCA-----A-CTGTAATATA-T-----------GCCTTATCGAAAATAAAAAAAATTCGAAAC----AATGCAAGACAAGTAACTAATGGGTGAAATATTATTTAACATGTGGTGTAGCATTCGACCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGTATAACGAAAGGTAACTGGCAAGCGGGAAAGTGGACATAAATG-ATATGGTAATA----TATGGTCAAAT-GGAACTTAATGTT-AAATGATATTATACAAGAA--ATACATACATATAAGAACACACACACAC------GCACG----CACAAGC----------ACA-----TATGCATGCACGCACGCATG-CACGCActgtgtatttaaaactattacatggtattagtaaa
gi|4 : AGATAGATAGGTTCTTTTATTCCTCCATTCAGAAG-----AGCA-TATGATGAAAT-ACATGCATTTAAA--CAGAACGTCATATATAAGTATTTA--AAAACAACACGATAAAAGT------------GCAATAAACAGAATACA-------TGTATGAT---AAT---TT---TAG--------AAT-------------TACA--ATAGATTGAACA-G----AATT-ATAGTAG------AAA------A---------A--GC-----A-----TTGC-AATGATTTTCAGACCAAACA-TTT---------------TTAT---CTAGATTATGTTATAACACCTCA-----A-ATGT--TATA-TA-----TA----CTTTACCGACAATAAAATTAAATCGAAAC----AATGCAAGGCAAGTAACTTAAAGGTGAAATATTATTTAACATATGTTATAGCATTTGGCCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAACGGGATATTGGACATTAATG-ATATGGTCATATAATTATGGTCAAAT-GGAACTTAATGTA-AATATATATTATACAAGAA--ATGCATAC------AA------------------GTACG----gtcacgcatattcgc
gi|5 : AGATATATTATTTTACTCCTCCATTCAGGAG-----AGCA-TACATTATAAT-ACAAACATTTAAA--CAGACAGT--TATATAAGTGTTTG--AAAATAACATATTTAAAGTCAGCAAAATAGTGCAA-AA-CAGAA--CA-ATA-ATTGTAGAATTATAAATGAGTGTACAG--------AATATAAGAACTATAATACA--TTAGATGGAATATG----CATGCAC-GTATATCCTCATATTGGAAATTTCGCTTTATTAC-----A-----TTGT-AATAACATTCAGACAAAACAACAT---------------T-AT---TTAGAATATGTTATAACACC-CA-----ACAAGT-ACATA-CG-----T-T-TGTCCTACCG-----------AAATCGAAAC-----------------TAACTGATAGGCTAAACATT
gi|5 : AACATTATTTAGAATATGTTATAACACCCAACAAGTACATAC-----GT--TTGTCCTACC-GAAATCGAAA---C-----------TAACTGATAGGCTAAACATTTGAC--AAAGGCACATGGT--TA----AATCG--AAATCGGATATTGCTGTATAAAACATGCTATtgacaaaggcacatggttaaatcgaaatcggatattgctgtataaaacatgctatgtacatgtata
gi|6 : agatatattattttactcctccattcaggagagcatacattataatacaaacatttaaacagacagttatataagtgtttgaaaataacatatttaaagtcagcaaaatagtgcaaaacagaacaataattgtagaattataaatgagtgtacagaatataagaactataatacattagatggaatatgcatgcacgtatatcctcatattggaaatttcgctttattacattgtaataacattcagacaaaac-AAAGTACAC-ACACAA-AC--ACACACAC------AA----------AC------GCACG----CGT--GCGCGCACATGTACG-----TACGCATGCACGCACGCAgtacatgtata
gi|6 : aaagtgacaacaattaggacaatacatctaacaggagatgaagtattcaaaggatatatttttcataaaactgcataaacTACGTAC------GC----------AT------GCACG----CAC--GC----------ACA-----TG-GTATGGACcatggtatggacagagcagtatcaataatcataacaattgacgtaaggactgtcagcaaacagtttaaacgtatccggtgtaatcacaacaatacaattttcggtaatactgttaataaacttattgacgaatgatgcatattttatgagcatttatcgacaaatatataggtcatttaattttgaaacatcgttttcatcaatggacatgatacaaat
gi|7 : aaagtgacaacaattaggacaatacatctaacaggagatgaagtattcaaaggatatatttttcataaaactgcataaacaaagtacacacacaaacacacacacaaacgcacgcgtgcgcgcacatgTATAATATTTTATTCTTCCATTCAGGAA-----AGCA-TACAGTACAAT-----------AAA--CA------------------TTTG--AAA------TGTTAA---TGATCAAAATAGTACAA-AATCAGAATACATGTATACTGTATAGTTAT---------TACAG--------AAT-------------TACA--agagcagtatcaataatcataacaattgacgtaaggactgtcagcaaacagtttaaacgtatccggtgtaatcacaacaatacaattttcggtaatactgttaataaacttattgacgaatgatgcatattttatgagcatttatcgacaaatatataggtcatttaattttgaaacatcgttttcatcaatggacatgatacaaat
gi|7 : TGC-----A-----CTGG-ACTAATTTTCAGAT-ATACA-TGTACAAGGAAAAGTGCTTTATAATTTAGATTATATTTTAGCACC-CACCGGGA-ATACAAT-TA-T------TTT-TGCTTTACCG------------AATTGAA------AATGT--GAC--TCAATTGATAAGTGAAATATaatatgtcttgcttattatacatattacttatagcactgaataatatgcatgcaatatgttaagacatccttataaattatgtaaaacaggtgcactggactaattttcagatatacatgtacaaggaaaagtgctttataatttagattatattttagcacccaccgggaatacaattatttttgctttaccgaattgaaaatgtgactcaattgataagtgaaatat
gi|7 : tataatattttattcttccattcaggaaagcatacagtacaataaacatttgaaatgttaatgatcaaaatagtacaaaatcagaatacatgtatactgtatagttattacagaattacaaatatgtcttgcttattatacatattacttatagcactgaataatatgcatgcaatatgttaagacatccttataaattatgtaaaacaggAT---TTAGATTATATTTTAGCACC-CACCGGGA-ATACAAT-TA-T------TTT-TGCTTTACCG------------AATTGAA------AATGT--GAC--TCAATTGATAAGTGAAATAT
gi|8 : tataatattttattcttccattcaggaaagcatacagtacaataaacatttgaaatgttaatgatcaaaatagtacaaaatcagaatacatgtatactgtatagttattacagaattacaaatatgtcttgcttattatacatattacttatagcactgaataatatgcatgcaatatgttaagacatccttataaattatgtaaaacaggtgcactggactaattttcagatatacatgtacaaggaaaagtgctttataTAGAGTCTTTTATTCCTCCATTCAGGAG-----AGCT-TATAATACAAT-ACAAACATTTAAA--CAGAGCGTCATATATAAGTATTTGGAAAAAAAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAAAATACA-ATA-GTTGTAGAATTACAACAGATTGTACAG--------AAT-------------TATA--GT---AGAAAAA-A----CATG-ACAGTATTTTTTCATA------ATTTTG----ATTGTGTTACA-----TTGCAA-TAATTTTCAGACCAAACA-TAT---------------TTAT---CTAGATTATGTTATAACACCTCA-----A-ATGTAATATA------------TGCCTTACCGAAAATAAAATAAAATCGAAAC----AGTGCAAGACAAGTAACTAA
gi|9 : ATTCTTCCACTCAGGAG-----AA-----------AAT-ACAAGCATTTAAA--CAGATAATCATATACA--TATTAG--CAAATAACATGATTAAAGTCATCAAAATTGTGCAA-AA-CAGAACATA-ATA-GTTGTAGAATTACAATAGAATGTACAGAATTGAATAAT-------------TACATTCTAGTAGAATAA-G----CATG-ACAGTATTATAT-ATA------ATTATA----CTTGT-----A-----T
Alignments
lowQualScore : 11111 11111111 2222222222222 111111 111111 1111 22222222222 22222222222222222222 1111111 333333333333 1111 11111 1111 111 44444444444444444444444444 1111111111 111111
lowQualScore : 0 11111 3 1 3 55 33 11 1 55 4 3 0 88888 2 66666666 4444444444444 666 5 33 888888 5 1 1 0 666666 2222 88888888888 5 55 4 66666666666666666666 3 2222222 2 1 777777777777 99999999999 0000 0 2 66666 99 6 1 0 8 99 7777 0 8 5 5 1 11 000 66 11111111111111111111111111 7777 55 7777777777 333333 0 666
lowQualScore : . ..... . . . .. .. .. . .. . . . ..... . ........ ............. ... . .. ...... . . . . ...... .... ........... . .. . .................... . ....... . . ............ ........... .... . . ..... .. . . . . .. .... . . . . . .. ... .. .......................... .... .. .......... ...... . ...
lowQualScore : 6 77777 6 0 6 00 66 55 2 00 0 4 9 11111 0 11111111 4444444444444 444 0 33 111111 7 7 6 7 444444 1111 55555555555 0 22 4 33333333333333333333 6 1111111 0 9 666666666666 99999999999 6666 1 2 77777 22 7 7 8 0 44 0000 8 0 7 7 0 11 000 99 55555555555555555555555555 7777 55 5555555555 000000 7 222
consensus : NNNACAGATAGATAGATTATTTTATTCCTCCATTCAGGAG-----AGCA-TACGATACAAT-ACAAGCATTTAAA--CAGANCGTCATATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAT-------------TACA--GTAGAAGAAAAA-G----CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----T-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATAT--A----TT---TGCCTTACCGAAAATAAAATAAAATCGAAAC----AATGCAAGACAAGTAACTGATAGGTGAAATATTATTTAACATATGTTATAGCATTCGACCGTTTCATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTANTA----TATGGTCAAAT-GGAACTTAAT-GTA-AAAACATATTATACA---AGAA--ATACATAC------GA----------AC------GCACG----CAC--GC----------ACG-----TACGCATGCACGCACGCANT-CACGCATAT
Reference ( family-503 ) : NNNACAGATAGATAGATTATTTTATTCCTCCATTCAGGAG-----AGCA-TACGATACAAT-ACAAGCATTTAAA--CAGANCGTCATATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAT-------------TACA--GTAGAAGAAAAA-G----CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----T-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATAT--A----TT---TGCCTTACCGAAAATAAAATAAAATCGAAAC----AATGCAAGACAAGTAACTGATAGGTGAAATATTATTTAACATATGTTATAGCATTCGACCGTTTCATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTANTA----TATGGTCAAAT-GGAACTTAAT-GTA-AAAANATATTATACA---AGAA--ATACATAC------GA----------AC------GCACG----CAC--GC----------ACG-----TACGCATGCACGCACGCANT-CACGCATAT
gi|1 : TTTTATTCCTCCAATCAAGAG-----AGCA-TATGATACAAT-ACAAGCATTTAAA--TAGAACGTCGTATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATT-ATTGTAGAGTTACAATAGATTGTACAG--------AAT-------------TACA--AT--AAAAAAAA-GTATTCATG-ACAG--TTTTATCACA------CTTTTG----ATTGTGATACA-----T-TG-CAATAATTTTCAGACCAAACA-TGT--------------TT----ATCTAGATTATATTATAACACCTCA-----A-ATGTAATATAT--A---------TGCCTTACCGAAAATAAAATAAAATCGAAACAACGAATGCAAGACAAGTAACTTATGGGTGAAATATTATTCAACATATTTTATATCATTCGACCGTTTCATACCAAAAATCGTTGTCTTACCAAAAATCGAAAATGTAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTACTA----TATGGTCAAAT-GGAACTTAAT-GTA-AAAAGATATGATACA---AGAA--ATACATACATATAGGA----------AT------GCACG----CAC--AC----------ACA-----TACGCATGCAGGCATGCAGT-CACGCATAT
gi|10 : ACGTAC------AA----------ACTACTGAGCACA----TAC--AC----------AC-------ACGCACGCACGCACGCAATACACACATAt
gi|10 : aaacgtgaaattaatatactaaatgagcaagaagtttgatatcgatcataacacc--ATACACAC------------------AC------GCACG----CAC--GC----------ACGCAATACACACATACACGCATGCAGA-CACcacgcatgcagacacagacacatgagttctttagaccatgtcaaaaagaataggataccatacaataatgtatataaaaacaccatataaactgagtgtatt
gi|11 : aaacgtgaaattaatatactaaatgagcaagaagtttgatatcgatcataacaccacgtacaaactactgagcacAATAGTG-AAAACACAC---ACA---CGCA---CGCATGC------GC----------AC------GTACGATTGCAC--AC----------ACA-----TAAGCATGCACACACGCAAT-CACACATATagacacatgagttctttagaccatgtcaaaaagaataggataccatacaataatgtatataaaaacaccatataaactgagtgtatt
gi|12 : atatcatcatgataaaaaatagcaaAGATAAATAGATTCTTTTATTCCTCCATTTAGGAG-----AGCA-AATGATACAAT-ACAAGCATTTAAA--CAGAACGTCATATATATGTATTTG--AAAACAACATTATAAAAATCAGCAAAATAGTGCAA-AAACAGAATATA-ATT-ATTGTAGAATTACAATAGATTGTACAT--------AAT-------------TACA--Gtcgcgcgcgctctatgtgggtgttgtttagatcatgctgtccagaacattaattaattaatttccaaaatgcgttactgtccat
gi|13 : TAGAAATATTATTTTATACCACCGTTCTAGAT-----AGTA-AACAATATAAT-ACAAACAGTTAAAAACAGGCAATCATATA--AGTATTTA--AACAAAACATG
gi|14 : C------ACACA----CAC--AC----------ACA-----TATGCATGCACGCACACATG-CACACACAttgtacagaatatatttacagaacagtagaatatgatatgaacttattataaaacatcattataat
gi|15 : caaaaaataatatgtatatacttgaatgaatttcatgatcaatattacattattatgtattcggtgacgatgcgtcactatcagatcTAGATAGATTATTTTATTCCTTTATTCAGGAG-----TTCA-TATGATACTAT-AAAAACATTTAAA--CAGACAGTCATAT-----------------CATCATGATAAAAAATAGCAAAATAGTG--A-AAACAcac
gi|16 : taagAAGCATAATGCATA---ATAATGATACATTA------GA----------AT------ACATG----TAC--GC----------ACG-----TACACATGCGCACACGCACT-TACGCACAcacacacgcacgcat
gi|17 : actattaatggcggaatggtcggAGACAAATAACTGTTAGATAAAATATT---TAACATCTGTTATAGCATCCAACCATTCTATAC-----GT--TTGTCTTACC-GAAATCGAACATTCAAGACcaattacgcacagat
gi|18 : gAGACGAAATA-CCT--------------TC----ATTTGGCTTATGTTATAACTCCCCA-----C-CT---ATATACTAA----TT---TGCATTACCGAAA-----------TCAAAAC----AACGCAAGACACGTAACTagt
gi|19 : tgAGACCATTTTATTCCTCTATTCAGGAGGTCATAGTATTACAATAAAATGACAAACA--TACA--CAGAGCG-CATGT-TAA
gi|2 : ACAGACAGTTATATTATTTTATTCCTCCATTCAGGAG-----GGCA-TATGATACAAT-ATAAGCATTTAAA--CAGAACGTCATATATAAGTATTTG--AGAACAACATGATAAAAGTCGGCAAAATAGTGCAA-AAACAGAATATA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAG-------------TATA--GTAGAAAAAAAA-AA---CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----T-T-------ATTTTCAGACCTAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATAT--AAAAATTATATGCCTTACCGAAAATAAAATAAAATCGAAAC----AGTGCAAGACAAGTAACTAATAGGTGAAATATTATTTAACATATTTTACAGCATTCGACCGTTTCATAC-----GT--TTGTCTTGCC-AAAATCGAAAATGCGAGACGAAAGGTCACTAGCAAGCGGGATAGTGGACATAAATG-ATATGGTACTA----TATGGTCAAAT-GGAACTCAAT-GTA-AAAATATATTATACA---ATAA--ATACATAC------GA----------AC------ACACG----CAC--GC----------ACG-----TACGCATCCATGCACGCAAT-CACGCATAT
gi|20 : tacAGATAGATAGTTTCTTTTATTCCTCCATTCAGGAGT----AGC
gi|3 : ATATAAGTCTTTG--CAAACAACACTATAAAAGTCAGCAAAATAGTGCAA-AAACCGAATA-------------GAATTACAATAGATTGTACAT--------AAT-------------TACA--GTAGAAGAA----G----CATG-ATAGTATTTTATCATA------ATTTTG----ATTGT-----AATACAT-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTGTAACACCTCA-----A-CTGTAATATAT-------------GCCTTATCGAAAATAAAAAAAATTCGAAAC----AATGCAAGACAAGTAACTAATGGGTGAAATATTATTTAACATGTGGTGTAGCATTCGACCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGTATAACGAAAGGTAACTGGCAAGCGGGAAAGTGGACATAAATG-ATATGGTAATA----TATGGTCAAAT-GGAACTTAAT-GTT-AAATGATATTATACA---AGAA--ATACATACATATAAGAACACACACACAC------GCACG----CACAAGC----------ACA-----TATGCATGCACGCACGCATG-CACGCActgtgtatttaaaactattacatggtattagtaaa
gi|4 : AGATAGATAGGTTCTTTTATTCCTCCATTCAGAAG-----AGCA-TATGATGAAAT-ACATGCATTTAAA--CAGAACGTCATATATAAGTATTTA--AAAACAACACGATAAAAGT------------GCAATAAACAGAATACA-------TGTATGAT---AAT---TT---TAG--------AAT-------------TACA--ATAGATTGAACA-G----AATT-ATAGTAG------AAA------A---------A--GC-----A-----T-TG-CAATGATTTTCAGACCAAACA-TTT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTTATATAT--A-----------CTTTACCGACAATAAAATTAAATCGAAAC----AATGCAAGGCAAGTAACTTAAAGGTGAAATATTATTTAACATATGTTATAGCATTTGGCCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAACGGGATATTGGACATTAATG-ATATGGTCATATAATTATGGTCAAAT-GGAACTTAAT-GTA-AATATATATTATACA---AGAA--ATGCATAC------AA------------------GTACG----gtcacgcatattcgc
gi|5 : AGATATATTATTTTACTCCTCCATTCAGGAG-----AGCA-TACATTATAAT-ACAAACATTTAAA--CAGACAGT--TATATAAGTGTTTG--AAAATAACATATTTAAAGTCAGCAAAATAGTGCAA-AA-CAGAA--CA-ATA-ATTGTAGAATTATAAATGAGTGTACAG--------AATATAAGAACTATAATACA--TTAGATGGAATATG----CATGCAC-GTATATCCTCATATTGGAAATTTCGCTTTATTAC-----A-----T-TG-TAATAACATTCAGACAAAACAACAT--------------T-----ATTTAGAATATGTTATAACACC-CA-----ACAAGT-ACATAC--G----TT---TGTCCTACCG-----------AAATCGAAAC-----------------TAACTGATAGGCTAAACATT
gi|5 : AACATTATTTAGAATATGTTATAACACCCAACAAGTACATAC-----GT--TTGTCCTACC-GAAATCGAAA---C-----------TAACTGATAGGCTAAACATTTGAC--AAAGGCACATGGT--TA----AATCG--AAATCGGATATTGCT-GTATAAAACATGCTATtgacaaaggcacatggttaaatcgaaatcggatattgctgtataaaacatgctatgtacatgtata
gi|6 : agatatattattttactcctccattcaggagagcatacattataatacaaacatttaaacagacagttatataagtgtttgaaaataacatatttaaagtcagcaaaatagtgcaaaacagaacaataattgtagaattataaatgagtgtacagaatataagaactataatacattagatggaatatgcatgcacgtatatcctcatattggaaatttcgctttattacattgtaataacattcagacaaaacT-GCA-TAAACAAAGTACACACACAAAC--ACACACAC------AA----------AC------GCACG----CGT--GCGCGCACATGTACG-----TACGCATGCACGCACGCAgtacatgtata
gi|6 : aaagtgacaacaattaggacaatacatctaacaggagatgaagtattcaaaggatatatttttcataaaacTACGTAC------GC----------AT------GCACG----CAC--GC----------ACA-----TG-GTATGGACcatggtatggacagagcagtatcaataatcataacaattgacgtaaggactgtcagcaaacagtttaaacgtatccggtgtaatcacaacaatacaattttcggtaatactgttaataaacttattgacgaatgatgcatattttatgagcatttatcgacaaatatataggtcatttaattttgaaacatcgttttcatcaatggacatgatacaaat
gi|7 : aaagtgacaacaattaggacaatacatctaacaggagatgaagtattcaaaggatatatttttcataaaactgcataaacaaagtacacacacaaacacacacacaaacgcacgcgtgcgcgcacatgTATTTTATTCTTCCATTCAGGAA-----AGCA-TACAGTACAAT-----------AAA--CA------------------TTTG--AAA------TGTTAA---TGATCAAAATAGTACAA-AATCAGAATACATGTATACTGTATAGTTAT---------TACAG--------AAT-------------TACA--agagcagtatcaataatcataacaattgacgtaaggactgtcagcaaacagtttaaacgtatccggtgtaatcacaacaatacaattttcggtaatactgttaataaacttattgacgaatgatgcatattttatgagcatttatcgacaaatatataggtcatttaattttgaaacatcgttttcatcaatggacatgatacaaat
gi|7 : tataaTGC-----A-----C-TG-GACTAATTTTCAGA-TATACA-TGTACAAGGAAAAGTGCTTTATAATTTAGATTATATTTTAGCACC-CACCGGGA-ATACAAT-TAT--T----TT---TGCTTTACCG------------AATTGAA------AATGT--GAC--TCAATTGATAAGTGAAATATaatatgtcttgcttattatacatattacttatagcactgaataatatgcatgcaatatgttaagacatccttataaattatgtaaaacaggtgcactggactaattttcagatatacatgtacaaggaaaagtgctttataatttagattatattttagcacccaccgggaatacaattatttttgctttaccgaattgaaaatgtgactcaattgataagtgaaatat
gi|8 : tataatattttattcttccattcaggaaagcatacagtacaataaacatttgaaatgttaatgatcaaaatagtacaaaatcagaatacatgtatactgtatagttattacagaattacaaatatgtcttgcttattatacatattacttatagcactgaataatatgcatgcaatatgttaagacatccttataaattatgtaaaacaggTAGAGTCTTTTATTCCTCCATTCAGGAG-----AGCT-TATAATACAAT-ACAAACATTTAAA--CAGAGCGTCATATATAAGTATTTGGAAAAAAAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAAAATACA-ATA-GTTGTAGAATTACAACAGATTGTACAG--------AAT-------------TATA--GT---AGAAAAA-A----CATG-ACAGTATTTTTTCATA------ATTTTG----ATTGTGTTACA-----T-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATA-------------TGCCTTACCGAAAATAAAATAAAATCGAAAC----AGTGCAAGACAAGTAACTAA
gi|9 : ATTCTTCCACTCAGGAG-----AA-----------AAT-ACAAGCATTTAAA--CAGATAATCATATACA--TATTAG--CAAATAACATGATTAAAGTCATCAAAATTGTGCAA-AA-CAGAACATA-ATA-GTTGTAGAATTACAATAGAATGTACAGAATTGAATAAT-------------TACATTCTAGTAGAATAA-G----CATG-ACAGTATTATAT-ATA------ATTATA----CTTGT-----A-----TATATTAATAATATATA-ATTA---A-TAC--------------CT----ATGTA------GTTATA----CTTA-----T-ATATAAT-TGT--A----CT---TG
Alignments
lowQualScore : 11111 11111111 2222222222222 111111 111111 1111 22222222222 22222222222222222222 1111111 333333333333 1111 11111 1111 111 44444444444444444444444444 1111111111 111111
lowQualScore : 0 11111 3 1 3 55 33 11 1 55 4 3 0 88888 2 66666666 4444444444444 666 5 33 888888 5 1 1 0 666666 2222 88888888888 5 55 4 66666666666666666666 3 2222222 2 1 777777777777 99999999999 0000 0 2 66666 99 6 1 0 8 99 7777 0 8 5 5 0 11 000 66 11111111111111111111111111 7777 55 7777777777 333333 0 666
lowQualScore : . ..... . . . .. .. .. . .. . . . ..... . ........ ............. ... . .. ...... . . . . ...... .... ........... . .. . .................... . ....... . . ............ ........... .... . . ..... .. . . . . .. .... . . . . . .. ... .. .......................... .... .. .......... ...... . ...
lowQualScore : 6 77777 6 0 6 00 66 55 2 00 0 4 9 11111 0 11111111 4444444444444 444 0 33 111111 7 7 6 7 444444 1111 55555555555 0 22 4 33333333333333333333 6 1111111 0 9 666666666666 99999999999 6666 1 2 77777 22 7 7 8 0 44 0000 8 0 7 7 2 11 000 99 55555555555555555555555555 7777 55 5555555555 000000 7 222
consensus : NNNACAGATAGATAGATTATTTTATTCCTCCATTCAGGAG-----AGCA-TACGATACAAT-ACAAGCATTTAAA--CAGANCGTCATATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAT-------------TACA--GTAGAAGAAAAA-G----CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----T-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATAT--A----TT---TGCCTTACCGAAAATAAAATAAAATCGAAAC----AATGCAAGACAAGTAACTGATAGGTGAAATATTATTTAACATATGTTATAGCATTCGACCGTTTCATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTANTA----TATGGTCAAAT-GGAACTTAAT-GTA-AAAACATATTATACA---AGAA--ATACATAC------GA----------AC------GCACG----CAC--GC----------ACG-----TACGCATGCACGCACGCANT-CACGCATAT
Reference ( family-503 ) : NNNACAGATAGATAGATTATTTTATTCCTCCATTCAGGAG-----AGCA-TACGATACAAT-ACAAGCATTTAAA--CAGANCGTCATATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAT-------------TACA--GTAGAAGAAAAA-G----CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----T-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATAT--A----TT---TGCCTTACCGAAAATAAAATAAAATCGAAAC----AATGCAAGACAAGTAACTGATAGGTGAAATATTATTTAACATATGTTATAGCATTCGACCGTTTCATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTANTA----TATGGTCAAAT-GGAACTTAAT-GTA-AAAACATATTATACA---AGAA--ATACATAC------GA----------AC------GCACG----CAC--GC----------ACG-----TACGCATGCACGCACGCANT-CACGCATAT
gi|1 : TTTTATTCCTCCAATCAAGAG-----AGCA-TATGATACAAT-ACAAGCATTTAAA--TAGAACGTCGTATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATT-ATTGTAGAGTTACAATAGATTGTACAG--------AAT-------------TACA--AT--AAAAAAAA-GTATTCATG-ACAG--TTTTATCACA------CTTTTG----ATTGTGATACA-----T-TG-CAATAATTTTCAGACCAAACA-TGT--------------TT----ATCTAGATTATATTATAACACCTCA-----A-ATGTAATATAT--A---------TGCCTTACCGAAAATAAAATAAAATCGAAACAACGAATGCAAGACAAGTAACTTATGGGTGAAATATTATTCAACATATTTTATATCATTCGACCGTTTCATACCAAAAATCGTTGTCTTACCAAAAATCGAAAATGTAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTACTA----TATGGTCAAAT-GGAACTTAAT-GTA-AAAAGATATGATACA---AGAA--ATACATACATATAGGA----------AT------GCACG----CAC--AC----------ACA-----TACGCATGCAGGCATGCAGT-CACGCATAT
gi|10 : ACGTAC------AA----------ACTACTGAGCACA----TAC--AC----------AC-------ACGCACGCACGCACGCAATACACACATAt
gi|10 : aaacgtgaaattaatatactaaatgagcaagaagtttgatatcgatcataacacc--ATACACAC------------------AC------GCACG----CAC--GC----------ACGCAATACACACATACACGCATGCAGA-CACcacgcatgcagacacagacacatgagttctttagaccatgtcaaaaagaataggataccatacaataatgtatataaaaacaccatataaactgagtgtatt
gi|11 : aaacgtgaaattaatatactaaatgagcaagaagtttgatatcgatcataacaccacgtacaaactactgagcacAATAGTG-AAAACACAC---ACA---CGCA---CGCATGC------GC----------AC------GTACGATTGCAC--AC----------ACA-----TAAGCATGCACACACGCAAT-CACACATATagacacatgagttctttagaccatgtcaaaaagaataggataccatacaataatgtatataaaaacaccatataaactgagtgtatt
gi|12 : atatcatcatgataaaaaatagcaaAGATAAATAGATTCTTTTATTCCTCCATTTAGGAG-----AGCA-AATGATACAAT-ACAAGCATTTAAA--CAGAACGTCATATATATGTATTTG--AAAACAACATTATAAAAATCAGCAAAATAGTGCAA-AAACAGAATATA-ATT-ATTGTAGAATTACAATAGATTGTACAT--------AAT-------------TACA--Gtcgcgcgcgctctatgtgggtgttgtttagatcatgctgtccagaacattaattaattaatttccaaaatgcgttactgtccat
gi|13 : TAGAAATATTATTTTATACCACCGTTCTAGAT-----AGTA-AACAATATAAT-ACAAACAGTTAAAAACAGGCAATCATATA--AGTATTTA--AACAAAACATG
gi|14 : C------ACACA----CAC--AC----------ACA-----TATGCATGCACGCACACATG-CACACACAttgtacagaatatatttacagaacagtagaatatgatatgaacttattataaaacatcattataat
gi|15 : caaaaaataatatgtatatacttgaatgaatttcatgatcaatattacattattatgtattcggtgacgatgcgtcactatcagatcTAGATAGATTATTTTATTCCTTTATTCAGGAG-----TTCA-TATGATACTAT-AAAAACATTTAAA--CAGACAGTCATAT-----------------CATCATGATAAAAAATAGCAAAATAGTG--A-AAACAcac
gi|16 : taagAAGCATAATGCATA---ATAATGATACATTA------GA----------AT------ACATG----TAC--GC----------ACG-----TACACATGCGCACACGCACT-TACGCACAcacacacgcacgcat
gi|17 : actattaatggcggaatggtcggAGACAAATAACTGTTAGATAAAATATT---TAACATCTGTTATAGCATCCAACCATTCTATAC-----GT--TTGTCTTACC-GAAATCGAACATTCAAGACcaattacgcacagat
gi|18 : gAGACGAAATA-CCT--------------TC----ATTTGGCTTATGTTATAACTCCCCA-----C-CT---ATATACTAA----TT---TGCATTACCGAAA-----------TCAAAAC----AACGCAAGACACGTAACTagt
gi|19 : tgAGACCATTTTATTCCTCTATTCAGGAGGTCATAGTATTACAATAAAATGACAAACA--TACA--CAGAGCG-CATGT-TAA
gi|2 : ACAGACAGTTATATTATTTTATTCCTCCATTCAGGAG-----GGCA-TATGATACAAT-ATAAGCATTTAAA--CAGAACGTCATATATAAGTATTTG--AGAACAACATGATAAAAGTCGGCAAAATAGTGCAA-AAACAGAATATA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAG-------------TATA--GTAGAAAAAAAA-AA---CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----T-T-------ATTTTCAGACCTAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATAT--AAAAATTATATGCCTTACCGAAAATAAAATAAAATCGAAAC----AGTGCAAGACAAGTAACTAATAGGTGAAATATTATTTAACATATTTTACAGCATTCGACCGTTTCATAC-----GT--TTGTCTTGCC-AAAATCGAAAATGCGAGACGAAAGGTCACTAGCAAGCGGGATAGTGGACATAAATG-ATATGGTACTA----TATGGTCAAAT-GGAACTCAAT-GTA-AAAATATATTATACA---ATAA--ATACATAC------GA----------AC------ACACG----CAC--GC----------ACG-----TACGCATCCATGCACGCAAT-CACGCATAT
gi|20 : tacAGATAGATAGTTTCTTTTATTCCTCCATTCAGGAGT----AGC
gi|3 : ATATAAGTCTTTG--CAAACAACACTATAAAAGTCAGCAAAATAGTGCAA-AAACCGAATA-------------GAATTACAATAGATTGTACAT--------AAT-------------TACA--GTAGAAGAA----G----CATG-ATAGTATTTTATCATA------ATTTTG----ATTGT-----AATACAT-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTGTAACACCTCA-----A-CTGTAATATAT-------------GCCTTATCGAAAATAAAAAAAATTCGAAAC----AATGCAAGACAAGTAACTAATGGGTGAAATATTATTTAACATGTGGTGTAGCATTCGACCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGTATAACGAAAGGTAACTGGCAAGCGGGAAAGTGGACATAAATG-ATATGGTAATA----TATGGTCAAAT-GGAACTTAAT-GTT-AAATGATATTATACA---AGAA--ATACATACATATAAGAACACACACACAC------GCACG----CACAAGC----------ACA-----TATGCATGCACGCACGCATG-CACGCActgtgtatttaaaactattacatggtattagtaaa
gi|4 : AGATAGATAGGTTCTTTTATTCCTCCATTCAGAAG-----AGCA-TATGATGAAAT-ACATGCATTTAAA--CAGAACGTCATATATAAGTATTTA--AAAACAACACGATAAAAGT------------GCAATAAACAGAATACA-------TGTATGAT---AAT---TT---TAG--------AAT-------------TACA--ATAGATTGAACA-G----AATT-ATAGTAG------AAA------A---------A--GC-----A-----T-TG-CAATGATTTTCAGACCAAACA-TTT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTTATATAT--A-----------CTTTACCGACAATAAAATTAAATCGAAAC----AATGCAAGGCAAGTAACTTAAAGGTGAAATATTATTTAACATATGTTATAGCATTTGGCCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAACGGGATATTGGACATTAATG-ATATGGTCATATAATTATGGTCAAAT-GGAACTTAAT-GTA-AATATATATTATACA---AGAA--ATGCATAC------AA------------------GTACG----gtcacgcatattcgc
gi|5 : AGATATATTATTTTACTCCTCCATTCAGGAG-----AGCA-TACATTATAAT-ACAAACATTTAAA--CAGACAGT--TATATAAGTGTTTG--AAAATAACATATTTAAAGTCAGCAAAATAGTGCAA-AA-CAGAA--CA-ATA-ATTGTAGAATTATAAATGAGTGTACAG--------AATATAAGAACTATAATACA--TTAGATGGAATATG----CATGCAC-GTATATCCTCATATTGGAAATTTCGCTTTATTAC-----A-----T-TG-TAATAACATTCAGACAAAACAACAT--------------T-----ATTTAGAATATGTTATAACACC-CA-----ACAAGT-ACATAC--G----TT---TGTCCTACCG-----------AAATCGAAAC-----------------TAACTGATAGGCTAAACATT
gi|5 : AACATTATTTAGAATATGTTATAACACCCAACAAGTACATAC-----GT--TTGTCCTACC-GAAATCGAAA---C-----------TAACTGATAGGCTAAACATTTGAC--AAAGGCACATGGT--TA----AATCG--AAATCGGATATTGCT-GTATAAAACATGCTATtgacaaaggcacatggttaaatcgaaatcggatattgctgtataaaacatgctatgtacatgtata
gi|6 : agatatattattttactcctccattcaggagagcatacattataatacaaacatttaaacagacagttatataagtgtttgaaaataacatatttaaagtcagcaaaatagtgcaaaacagaacaataattgtagaattataaatgagtgtacagaatataagaactataatacattagatggaatatgcatgcacgtatatcctcatattggaaatttcgctttattacattgtaataacattcagacaaaacT-GCA-TAAACAAAGTACACACACAAAC--ACACACAC------AA----------AC------GCACG----CGT--GCGCGCACATGTACG-----TACGCATGCACGCACGCAgtacatgtata
gi|6 : aaagtgacaacaattaggacaatacatctaacaggagatgaagtattcaaaggatatatttttcataaaacTACGTAC------GC----------AT------GCACG----CAC--GC----------ACA-----TG-GTATGGACcatggtatggacagagcagtatcaataatcataacaattgacgtaaggactgtcagcaaacagtttaaacgtatccggtgtaatcacaacaatacaattttcggtaatactgttaataaacttattgacgaatgatgcatattttatgagcatttatcgacaaatatataggtcatttaattttgaaacatcgttttcatcaatggacatgatacaaat
gi|7 : aaagtgacaacaattaggacaatacatctaacaggagatgaagtattcaaaggatatatttttcataaaactgcataaacaaagtacacacacaaacacacacacaaacgcacgcgtgcgcgcacatgTATTTTATTCTTCCATTCAGGAA-----AGCA-TACAGTACAAT-----------AAA--CA------------------TTTG--AAA------TGTTAA---TGATCAAAATAGTACAA-AATCAGAATACATGTATACTGTATAGTTAT---------TACAG--------AAT-------------TACA--agagcagtatcaataatcataacaattgacgtaaggactgtcagcaaacagtttaaacgtatccggtgtaatcacaacaatacaattttcggtaatactgttaataaacttattgacgaatgatgcatattttatgagcatttatcgacaaatatataggtcatttaattttgaaacatcgttttcatcaatggacatgatacaaat
gi|7 : tataaTGC-----A-----C-TG-GACTAATTTTCAGA-TATACA-TGTACAAGGAAAAGTGCTTTATAATTTAGATTATATTTTAGCACC-CACCGGGA-ATACAAT-TAT--T----TT---TGCTTTACCG------------AATTGAA------AATGT--GAC--TCAATTGATAAGTGAAATATaatatgtcttgcttattatacatattacttatagcactgaataatatgcatgcaatatgttaagacatccttataaattatgtaaaacaggtgcactggactaattttcagatatacatgtacaaggaaaagtgctttataatttagattatattttagcacccaccgggaatacaattatttttgctttaccgaattgaaaatgtgactcaattgataagtgaaatat
gi|8 : tataatattttattcttccattcaggaaagcatacagtacaataaacatttgaaatgttaatgatcaaaatagtacaaaatcagaatacatgtatactgtatagttattacagaattacaaatatgtcttgcttattatacatattacttatagcactgaataatatgcatgcaatatgttaagacatccttataaattatgtaaaacaggTAGAGTCTTTTATTCCTCCATTCAGGAG-----AGCT-TATAATACAAT-ACAAACATTTAAA--CAGAGCGTCATATATAAGTATTTGGAAAAAAAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAAAATACA-ATA-GTTGTAGAATTACAACAGATTGTACAG--------AAT-------------TATA--GT---AGAAAAA-A----CATG-ACAGTATTTTTTCATA------ATTTTG----ATTGTGTTACA-----T-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATA-------------TGCCTTACCGAAAATAAAATAAAATCGAAAC----AGTGCAAGACAAGTAACTAA
gi|9 : ATTCTTCCACTCAGGAG-----AA-----------AAT-ACAAGCATTTAAA--CAGATAATCATATACA--TATTAG--CAAATAACATGATTAAAGTCATCAAAATTGTGCAA-AA-CAGAACATA-ATA-GTTGTAGAATTACAATAGAATGTACAGAATTGAATAAT-------------TACATTCTAGTAGAATAA-G----CATG-ACAGTATTATAT-ATA------ATTATA----CTTGT-----A-----TATATTAATAATATATA-ATTA---A-TAC--------------CT----ATGTA------GTTATA----CTTA-----T-ATATAAT-TGT--A----CT---TG
blockSeqs : GTCAT T T G AA AC AT T GA T A TGTAT A AATTGAAT ATAAGAACTATAA TTC A AA AA C T A TTGGAA CTTT AATACA A TT A ACAAGGAAAAGTGCTTTATA C CCGGGA A A AAAAATTATA AAAATAAAATA . G . . . A C AC TAAT C A T AT CAC TG ATATAAGAACACACACACAC ATTG AA GCGCACATGT GCAATA ATA
blockSeqs : T . C . . CA AT A . . A ATT A . . G A AC TG . T A . . GTTACA . C . TC T AC A A TAATT AAAATAAAAAA . A . . . G . AA . . . . TT . . AAACTACTGA . . . A GA
blockSeqs : . . T . . CA AT A . . A ATA A . . G A AT G . A C . . A . C . TT T C T A GTT ACAATAAAATT . A . . . A . CA . . . . TT . . GCAC . . . A AT
blockSeqs : . . C . . GC AT A . . A ATA T . . G A AA G . T T . . A . T . TT T A A A TTT AAAATAAAATA . T . . . A . . . . . . TT . . GAAT . . . G TG
blockSeqs : . . T . . AC AT A . . A ATA A . . A A TA A . T A . . A . G . TT T A A A ACT AAA . G . . . . . . CT . . GAAC . . . G CT
blockSeqs : . . T . . AC AT A . . T ATA A . . T . . G . . . . . A . C . TT T A A A A . . G . . GT . . AAAC . . . A AT
blockSeqs : . . C . . CA AC A . . A . . . . G A . . . CT . A . . . . . A C . GCAT . . . G TG
blockSeqs : . . C . . GC A A . . . . . . . . T . T . . . AC . . . A
blockSeqs : . . T . . TA T . . . . AA . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : G***** A********** ATT********* **** ***** ** GAAC**********************
originalCons : NNNACAGATAGATAGATTATTTTATTCCTCCATTCAGGAG-----AGCA-TACGATACAAT-ACAAGCATTTAAA--CAGANCGTCATATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAT-------------TACA--GTAGAAGAAAAA-G----CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----T-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATAT--A----TT---TGCCTTACCGAAAATAAAATAAAATCGAAAC----AATGCAAGACAAGTAACTGATAGGTGAAATATTATTTAACATATGTTATAGCATTCGACCGTTTCATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTANTA----TATGGTCAAAT-GGAACTTAAT-GTA-AAAACATATTATACA---AGAA--ATACATAC------GA----------AC------GCACG----CAC--GC----------ACG-----TACGCATGCACGCACGCANT-CACGCATAT
finalCons : NNNACAGATAGATAGATTATTTTATTCCTCCATTCAGGAG-----AGCA-TACGATACAAT-ACAAGCATTTAAA--CAGANCGTCATATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAT-------------TACA--GTAGAAGAAAAAG-----CATG-ACAGTATTTTATCATA------ATTTTG----ATTGTA----------T-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATATATT---------TGCCTTACCGAAAATAAAATAAAATCGAAAC----AATGCAAGACAAGTAACTGATAGGTGAAATATTATTTAACATATGTTATAGCATTCGACCGTTTCATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTANTA----TATGGTCAAAT-GGAACTTAAT-GTA-AAAACATATTATACA---AGAA--ATACATACGAAC----------------------GCACG----CAC--GC----------ACG-----TACGCATGCACGCACGCANT-CACGCATAT
Alignments
lowQualScore : 11111 11111111 2222222222222 111111 111111 1111 22222222222 22222222222222222222 1111111 333333333333 1111 11111 1111 111 44444444444444444444444444 1111111111 111111
lowQualScore : 0 11111 3 1 3 55 33 11 1 55 4 3 0 88888 2 66666666 4444444444444 666 5 33 888888 5 1 1 0 666666 2222 88888888888 5 55 4 66666666666666666666 3 2222222 2 1 777777777777 99999999999 0000 0 2 66666 99 6 1 0 8 99 7777 0 8 5 5 0 11 000 66 11111111111111111111111111 7777 55 7777777777 333333 0 666
lowQualScore : . ..... . . . .. .. .. . .. . . . ..... . ........ ............. ... . .. ...... . . . . ...... .... ........... . .. . .................... . ....... . . ............ ........... .... . . ..... .. . . . . .. .... . . . . . .. ... .. .......................... .... .. .......... ...... . ...
lowQualScore : 6 77777 6 0 6 00 66 55 2 00 0 4 9 11111 0 11111111 4444444444444 444 0 33 111111 7 7 6 7 444444 1111 55555555555 0 22 4 33333333333333333333 6 1111111 0 9 666666666666 99999999999 6666 1 2 77777 22 7 7 8 0 44 0000 8 0 7 7 2 11 000 99 55555555555555555555555555 7777 55 5555555555 000000 7 222
consensus : NNNACAGATAGATAGATTATTTTATTCCTCCATTCAGGAG-----AGCA-TACGATACAAT-ACAAGCATTTAAA--CAGANCGTCATATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAT-------------TACA--GTAGAAGAAAAA-G----CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----T-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATAT--A----TT---TGCCTTACCGAAAATAAAATAAAATCGAAAC----AATGCAAGACAAGTAACTGATAGGTGAAATATTATTTAACATATGTTATAGCATTCGACCGTTTCATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTANTA----TATGGTCAAAT-GGAACTTAAT-GTA-AAAACATATTATACA---AGAA--ATACATAC------GA----------AC------GCACG----CAC--GC----------ACG-----TACGCATGCACGCACGCANT-CACGCATAT
Reference ( family-503 ) : NNNACAGATAGATAGATTATTTTATTCCTCCATTCAGGAG-----AGCA-TACGATACAAT-ACAAGCATTTAAA--CAGANCGTCATATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAT-------------TACA--GTAGAAGAAAAA-G----CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----T-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATAT--A----TT---TGCCTTACCGAAAATAAAATAAAATCGAAAC----AATGCAAGACAAGTAACTGATAGGTGAAATATTATTTAACATATGTTATAGCATTCGACCGTTTCATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTANTA----TATGGTCAAAT-GGAACTTAAT-GTA-AAAACATATTATACA---AGAA--ATACATAC------GA----------AC------GCACG----CAC--GC----------ACG-----TACGCATGCACGCACGCANT-CACGCATAT
gi|1 : TTTTATTCCTCCAATCAAGAG-----AGCA-TATGATACAAT-ACAAGCATTTAAA--TAGAACGTCGTATATAAGTATTTG--AAAACAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAGAATACA-ATT-ATTGTAGAGTTACAATAGATTGTACAG--------AAT-------------TACA--AT--AAAAAAAA-GTATTCATG-ACAG--TTTTATCACA------CTTTTG----ATTGTGATACA-----T-TG-CAATAATTTTCAGACCAAACA-TGT--------------TT----ATCTAGATTATATTATAACACCTCA-----A-ATGTAATATAT--A---------TGCCTTACCGAAAATAAAATAAAATCGAAACAACGAATGCAAGACAAGTAACTTATGGGTGAAATATTATTCAACATATTTTATATCATTCGACCGTTTCATACCAAAAATCGTTGTCTTACCAAAAATCGAAAATGTAAGACGAAAGGTAACTGGCAAGCGGGATAGTGGACATAAATG-ATATGGTACTA----TATGGTCAAAT-GGAACTTAAT-GTA-AAAAGATATGATACA---AGAA--ATACATACATATAGGA----------AT------GCACG----CAC--AC----------ACA-----TACGCATGCAGGCATGCAGT-CACGCATAT
gi|10 : ACGTAC------AA----------ACTACTGAGCACA----TAC--AC----------AC-------ACGCACGCACGCACGCAATACACACATAt
gi|10 : aaacgtgaaattaatatactaaatgagcaagaagtttgatatcgatcataacacc--ATACACAC------------------AC------GCACG----CAC--GC----------ACGCAATACACACATACACGCATGCAGA-CACcacgcatgcagacacagacacatgagttctttagaccatgtcaaaaagaataggataccatacaataatgtatataaaaacaccatataaactgagtgtatt
gi|11 : aaacgtgaaattaatatactaaatgagcaagaagtttgatatcgatcataacaccacgtacaaactactgagcacAATAGTG-AAAACACAC---ACA---CGCA---CGCATGC------GC----------AC------GTACGATTGCAC--AC----------ACA-----TAAGCATGCACACACGCAAT-CACACATATagacacatgagttctttagaccatgtcaaaaagaataggataccatacaataatgtatataaaaacaccatataaactgagtgtatt
gi|12 : atatcatcatgataaaaaatagcaaAGATAAATAGATTCTTTTATTCCTCCATTTAGGAG-----AGCA-AATGATACAAT-ACAAGCATTTAAA--CAGAACGTCATATATATGTATTTG--AAAACAACATTATAAAAATCAGCAAAATAGTGCAA-AAACAGAATATA-ATT-ATTGTAGAATTACAATAGATTGTACAT--------AAT-------------TACA--Gtcgcgcgcgctctatgtgggtgttgtttagatcatgctgtccagaacattaattaattaatttccaaaatgcgttactgtccat
gi|13 : TAGAAATATTATTTTATACCACCGTTCTAGAT-----AGTA-AACAATATAAT-ACAAACAGTTAAAAACAGGCAATCATATA--AGTATTTA--AACAAAACATG
gi|14 : C------ACACA----CAC--AC----------ACA-----TATGCATGCACGCACACATG-CACACACAttgtacagaatatatttacagaacagtagaatatgatatgaacttattataaaacatcattataat
gi|15 : caaaaaataatatgtatatacttgaatgaatttcatgatcaatattacattattatgtattcggtgacgatgcgtcactatcagatcTAGATAGATTATTTTATTCCTTTATTCAGGAG-----TTCA-TATGATACTAT-AAAAACATTTAAA--CAGACAGTCATAT-----------------CATCATGATAAAAAATAGCAAAATAGTG--A-AAACAcac
gi|16 : taagAAGCATAATGCATA---ATAATGATACATTA------GA----------AT------ACATG----TAC--GC----------ACG-----TACACATGCGCACACGCACT-TACGCACAcacacacgcacgcat
gi|17 : actattaatggcggaatggtcggAGACAAATAACTGTTAGATAAAATATT---TAACATCTGTTATAGCATCCAACCATTCTATAC-----GT--TTGTCTTACC-GAAATCGAACATTCAAGACcaattacgcacagat
gi|18 : gAGACGAAATA-CCT--------------TC----ATTTGGCTTATGTTATAACTCCCCA-----C-CT---ATATACTAA----TT---TGCATTACCGAAA-----------TCAAAAC----AACGCAAGACACGTAACTagt
gi|19 : tgAGACCATTTTATTCCTCTATTCAGGAGGTCATAGTATTACAATAAAATGACAAACA--TACA--CAGAGCG-CATGT-TAA
gi|2 : ACAGACAGTTATATTATTTTATTCCTCCATTCAGGAG-----GGCA-TATGATACAAT-ATAAGCATTTAAA--CAGAACGTCATATATAAGTATTTG--AGAACAACATGATAAAAGTCGGCAAAATAGTGCAA-AAACAGAATATA-ATA-ATTGTAGAATTACAATAGATTGTACAG--------AAG-------------TATA--GTAGAAAAAAAA-AA---CATG-ACAGTATTTTATCATA------ATTTTG----ATTGT-----A-----T-T-------ATTTTCAGACCTAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATAT--AAAAATTATATGCCTTACCGAAAATAAAATAAAATCGAAAC----AGTGCAAGACAAGTAACTAATAGGTGAAATATTATTTAACATATTTTACAGCATTCGACCGTTTCATAC-----GT--TTGTCTTGCC-AAAATCGAAAATGCGAGACGAAAGGTCACTAGCAAGCGGGATAGTGGACATAAATG-ATATGGTACTA----TATGGTCAAAT-GGAACTCAAT-GTA-AAAATATATTATACA---ATAA--ATACATAC------GA----------AC------ACACG----CAC--GC----------ACG-----TACGCATCCATGCACGCAAT-CACGCATAT
gi|20 : tacAGATAGATAGTTTCTTTTATTCCTCCATTCAGGAGT----AGC
gi|3 : ATATAAGTCTTTG--CAAACAACACTATAAAAGTCAGCAAAATAGTGCAA-AAACCGAATA-------------GAATTACAATAGATTGTACAT--------AAT-------------TACA--GTAGAAGAA----G----CATG-ATAGTATTTTATCATA------ATTTTG----ATTGT-----AATACAT-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTGTAACACCTCA-----A-CTGTAATATAT-------------GCCTTATCGAAAATAAAAAAAATTCGAAAC----AATGCAAGACAAGTAACTAATGGGTGAAATATTATTTAACATGTGGTGTAGCATTCGACCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGTATAACGAAAGGTAACTGGCAAGCGGGAAAGTGGACATAAATG-ATATGGTAATA----TATGGTCAAAT-GGAACTTAAT-GTT-AAATGATATTATACA---AGAA--ATACATACATATAAGAACACACACACAC------GCACG----CACAAGC----------ACA-----TATGCATGCACGCACGCATG-CACGCActgtgtatttaaaactattacatggtattagtaaa
gi|4 : AGATAGATAGGTTCTTTTATTCCTCCATTCAGAAG-----AGCA-TATGATGAAAT-ACATGCATTTAAA--CAGAACGTCATATATAAGTATTTA--AAAACAACACGATAAAAGT------------GCAATAAACAGAATACA-------TGTATGAT---AAT---TT---TAG--------AAT-------------TACA--ATAGATTGAACA-G----AATT-ATAGTAG------AAA------A---------A--GC-----A-----T-TG-CAATGATTTTCAGACCAAACA-TTT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTTATATAT--A-----------CTTTACCGACAATAAAATTAAATCGAAAC----AATGCAAGGCAAGTAACTTAAAGGTGAAATATTATTTAACATATGTTATAGCATTTGGCCGTTTTATAC-----GT--TTGTCTTACC-GAAATCGAAAATGCAAGACGAAAGGTAACTGGCAAACGGGATATTGGACATTAATG-ATATGGTCATATAATTATGGTCAAAT-GGAACTTAAT-GTA-AATATATATTATACA---AGAA--ATGCATAC------AA------------------GTACG----gtcacgcatattcgc
gi|5 : AGATATATTATTTTACTCCTCCATTCAGGAG-----AGCA-TACATTATAAT-ACAAACATTTAAA--CAGACAGT--TATATAAGTGTTTG--AAAATAACATATTTAAAGTCAGCAAAATAGTGCAA-AA-CAGAA--CA-ATA-ATTGTAGAATTATAAATGAGTGTACAG--------AATATAAGAACTATAATACA--TTAGATGGAATATG----CATGCAC-GTATATCCTCATATTGGAAATTTCGCTTTATTAC-----A-----T-TG-TAATAACATTCAGACAAAACAACAT--------------T-----ATTTAGAATATGTTATAACACC-CA-----ACAAGT-ACATAC--G----TT---TGTCCTACCG-----------AAATCGAAAC-----------------TAACTGATAGGCTAAACATT
gi|5 : AACATTATTTAGAATATGTTATAACACCCAACAAGTACATAC-----GT--TTGTCCTACC-GAAATCGAAA---C-----------TAACTGATAGGCTAAACATTTGAC--AAAGGCACATGGT--TA----AATCG--AAATCGGATATTGCT-GTATAAAACATGCTATtgacaaaggcacatggttaaatcgaaatcggatattgctgtataaaacatgctatgtacatgtata
gi|6 : agatatattattttactcctccattcaggagagcatacattataatacaaacatttaaacagacagttatataagtgtttgaaaataacatatttaaagtcagcaaaatagtgcaaaacagaacaataattgtagaattataaatgagtgtacagaatataagaactataatacattagatggaatatgcatgcacgtatatcctcatattggaaatttcgctttattacattgtaataacattcagacaaaacT-GCA-TAAACAAAGTACACACACAAAC--ACACACAC------AA----------AC------GCACG----CGT--GCGCGCACATGTACG-----TACGCATGCACGCACGCAgtacatgtata
gi|6 : aaagtgacaacaattaggacaatacatctaacaggagatgaagtattcaaaggatatatttttcataaaacTACGTAC------GC----------AT------GCACG----CAC--GC----------ACA-----TG-GTATGGACcatggtatggacagagcagtatcaataatcataacaattgacgtaaggactgtcagcaaacagtttaaacgtatccggtgtaatcacaacaatacaattttcggtaatactgttaataaacttattgacgaatgatgcatattttatgagcatttatcgacaaatatataggtcatttaattttgaaacatcgttttcatcaatggacatgatacaaat
gi|7 : aaagtgacaacaattaggacaatacatctaacaggagatgaagtattcaaaggatatatttttcataaaactgcataaacaaagtacacacacaaacacacacacaaacgcacgcgtgcgcgcacatgTATTTTATTCTTCCATTCAGGAA-----AGCA-TACAGTACAAT-----------AAA--CA------------------TTTG--AAA------TGTTAA---TGATCAAAATAGTACAA-AATCAGAATACATGTATACTGTATAGTTAT---------TACAG--------AAT-------------TACA--agagcagtatcaataatcataacaattgacgtaaggactgtcagcaaacagtttaaacgtatccggtgtaatcacaacaatacaattttcggtaatactgttaataaacttattgacgaatgatgcatattttatgagcatttatcgacaaatatataggtcatttaattttgaaacatcgttttcatcaatggacatgatacaaat
gi|7 : tataaTGC-----A-----C-TG-GACTAATTTTCAGA-TATACA-TGTACAAGGAAAAGTGCTTTATAATTTAGATTATATTTTAGCACC-CACCGGGA-ATACAAT-TAT--T----TT---TGCTTTACCG------------AATTGAA------AATGT--GAC--TCAATTGATAAGTGAAATATaatatgtcttgcttattatacatattacttatagcactgaataatatgcatgcaatatgttaagacatccttataaattatgtaaaacaggtgcactggactaattttcagatatacatgtacaaggaaaagtgctttataatttagattatattttagcacccaccgggaatacaattatttttgctttaccgaattgaaaatgtgactcaattgataagtgaaatat
gi|8 : tataatattttattcttccattcaggaaagcatacagtacaataaacatttgaaatgttaatgatcaaaatagtacaaaatcagaatacatgtatactgtatagttattacagaattacaaatatgtcttgcttattatacatattacttatagcactgaataatatgcatgcaatatgttaagacatccttataaattatgtaaaacaggTAGAGTCTTTTATTCCTCCATTCAGGAG-----AGCT-TATAATACAAT-ACAAACATTTAAA--CAGAGCGTCATATATAAGTATTTGGAAAAAAAACATGATAAAAGTCAGCAAAATAGTGCAA-AAACAAAATACA-ATA-GTTGTAGAATTACAACAGATTGTACAG--------AAT-------------TATA--GT---AGAAAAA-A----CATG-ACAGTATTTTTTCATA------ATTTTG----ATTGTGTTACA-----T-TG-CAATAATTTTCAGACCAAACA-TAT--------------TT----ATCTAGATTATGTTATAACACCTCA-----A-ATGTAATATA-------------TGCCTTACCGAAAATAAAATAAAATCGAAAC----AGTGCAAGACAAGTAACTAA
gi|9 : ATTCTTCCACTCAGGAG-----AA-----------AAT-ACAAGCATTTAAA--CAGATAATCATATACA--TATTAG--CAAATAACATGATTAAAGTCATCAAAATTGTGCAA-AA-CAGAACATA-ATA-GTTGTAGAATTACAATAGAATGTACAGAATTGAATAAT-------------TACATTCTAGTAGAATAA-G----CATG-ACAGTATTATAT-ATA------ATTATA----CTTGT-----A-----TATATTAATAATATATA-ATTA---A-TAC--------------CT----ATGTA------GTTATA----CTTA-----T-ATATAAT-TGT--A----CT---TG