lowQualScore : 222 3
lowQualScore : ... .
lowQualScore : 888 0
consensus : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCCC
Reference ( gi|5 ) : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCTC
gi|4 : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGTCC
gi|11 : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---CGAACGCATACCCTCAAAATACGTTCGCCc
gi|10 : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---ATAACGCATACCCTCAAAATACATTCGCC
gi|9 : CGCCATTTTTGACACGTCTGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATTCGTTCGCCc
gi|13 : CGCTATTTTTGACGCGTCCGCTCATTTTTACAGCCTA---AGAACGCATACCCTCAAAATACGTTCc
gi|12 : cCGCCATTTTTTACGCGTCCGCTCATTTTTACCGTCTA---AGAACGCATGCCCTCAAAATACGTTCGt
gi|19 : cCGCCATTTTTGACGCTTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACG
gi|14 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACCTCCTA---AGAACGAATACCCTCAAAATACGTTC
gi|8 : cCGCCATTTTTGACACGTCCGCTCAATTTTACCGCCCA---AGAACGAATACCCTCAAAATACGTTCGCC
gi|3 : CGCCATTTTTGACGCATCCACTCATTTTTACCGCCTA---AGAAAGCATACCCTCAAAATATGTACGCCCc
gi|20 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACTGCTTA---AGAACGCATACCCTCCAAATAC
gi|17 : cCGCCATTTTTTACCCGTCCACTCATTTTTAATGCCTA---AGAACGCATACCCTCAAAATACG
gi|2 : cCGCCATTTTCAATGCGTCCGCTCATTTTTACCGCCTT---AAAACGCAGACCCTCAAAGCATGTTCACCC
gi|21 : cCGCCATTTTTGACGCGTTCCCTCATTTT-ACCGCCTA---AGAACGAACACCCTCAAAATGCG
gi|1 : CGTCATTTTTTACGCGTCCGCTCATTTTTACCCCCCATTTTTTACGCATACCTTCAAAATACGTTCGCC
gi|18 : cCACCATTTTTGACGCGTCTGCTCATTTTTAAAGGCTA---AGAACTCACACCTTC-AAATACGTT
gi|25 : CGCCATTTTTTACGCTTCCCATCATTTTTACCGCCTA---CGAACGCATAC
gi|24 : cCGCCATTAATTACGTGTCCCCTCATTTTTACCACCTG---AGAACGAAAGCCCTAAAAgttcgc
gi|28 : cCGCCATTTTTGACGCGTCTGCTCATTTTTA
gi|6 : cGTCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACACTCAAAATACGTTCGCCT
gi|7 : CCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCTTCATATTACATTCGCCc
gi|16 : ctCCATTTTTGACGCATCTGCGCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACATTCc
gi|15 : CCATTTTTGACGCATCCACTCATGTTTACGGCCTT---CGAACGAATACACTCAAAATACGTTCa
gi|26 : ccATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCC
gi|22 : cggtTTTGACGCGTCCGCTCATTTT-ACCGCCTA---AGAACGTATACCCTCAAAGTACGTTCG
gi|27 : caaTTTTACCGCCTA---AGAACAAATACCCTGAAAATACGCCCCCCC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): CTCCATTTATGACACATCCAATCATTCTGCCGCTTAGGAACGAATACAATCGTAATACG
Alignments
lowQualScore : 222
lowQualScore : ...
lowQualScore : 777
consensus : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCCC
Reference ( family-5026 ) : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCCC
gi|1 : CGTCATTTTTTACGCGTCCGCTCATTTTTACCCCCCATTTTTTACGCATACCTTCAAAATACGTTCGCC
gi|10 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---ATAACGCATACCCTCAAAATACATTCGCCC
gi|11 : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---CGAACGCATACCCTCAAAATACGTTCGCC
gi|12 : CGCCATTTTTTACGCGTCCGCTCATTTTTACCGTCTA---AGAACGCATGCCCTCAAAATACGTTCG
gi|13 : cCGCTATTTTTGACGCGTCCGCTCATTTTTACAGCCTA---AGAACGCATACCCTCAAAATACGTTC
gi|14 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACCTCCTA---AGAACGAATACCCTCAAAATACGTTCt
gi|15 : cCCATTTTTGACGCATCCACTCATGTTTACGGCCTT---CGAACGAATACACTCAAAATACGTTC
gi|16 : ccCCATTTTTGACGCATCTGCGCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACATTC
gi|17 : CGCCATTTTTTACCCGTCCACTCATTTTTAATGCCTA---AGAACGCATACCCTCAAAATACGa
gi|18 : cCACCATTTTTGACGCGTCTGCTCATTTTTAAAGGCTA---AGAACTCACACCTTC-AAATACGTT
gi|19 : CGCCATTTTTGACGCTTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACG
gi|2 : cCGCCATTTTCAATGCGTCCGCTCATTTTTACCGCCTT---AAAACGCAGACCCTCAAAGCATGTTCACCCC
gi|20 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACTGCTTA---AGAACGCATACCCTCCAAATAC
gi|21 : cCGCCATTTTTGACGCGTTCCCTCATTTT-ACCGCCTA---AGAACGAACACCCTCAAAATGCG
gi|22 : TTTGACGCGTCCGCTCATTTT-ACCGCCTA---AGAACGTATACCCTCAAAGTACGTTCG
gi|24 : caaCGCCATTAATTACGTGTCCCCTCATTTTTACCACCTG---AGAACGAAAGCCCTAAAA
gi|25 : cCGCCATTTTTTACGCTTCCCATCATTTTTACCGCCTA---CGAACGCATAC
gi|26 : cATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCgttcgc
gi|27 : cggtTTTTACCGCCTA---AGAACAAATACCCTGAAAATACGCCCCCCCC
gi|28 : CGCCATTTTTGACGCGTCTGCTCATTTTTAccct
gi|3 : cCGCCATTTTTGACGCATCCACTCATTTTTACCGCCTA---AGAAAGCATACCCTCAAAATATGTACGCCCC
gi|4 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGTCCC
gi|5 : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCTCc
gi|6 : GTCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACACTCAAAATACGTTCGCCTC
gi|7 : CCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCTTCATATTACATTCGCCCc
gi|8 : ctCGCCATTTTTGACACGTCCGCTCAATTTTACCGCCCA---AGAACGAATACCCTCAAAATACGTTCGCCC
gi|9 : CGCCATTTTTGACACGTCTGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATTCGTTCGCCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CTCCATTTATGACACATCCAATCATTCTGCCGCTTAGGAACGAATACAATCGTAATACG
Alignments
lowQualScore : 222
lowQualScore : ...
lowQualScore : 777
consensus : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCCC
Reference ( family-5026 ) : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCCC
gi|1 : CGTCATTTTTTACGCGTCCGCTCATTTTTACCCCCCATTTTTTACGCATACCTTCAAAATACGTTCGCC
gi|10 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---ATAACGCATACCCTCAAAATACATTCGCCC
gi|11 : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---CGAACGCATACCCTCAAAATACGTTCGCC
gi|12 : CGCCATTTTTTACGCGTCCGCTCATTTTTACCGTCTA---AGAACGCATGCCCTCAAAATACGTTCG
gi|13 : cCGCTATTTTTGACGCGTCCGCTCATTTTTACAGCCTA---AGAACGCATACCCTCAAAATACGTTC
gi|14 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACCTCCTA---AGAACGAATACCCTCAAAATACGTTCt
gi|15 : cCCATTTTTGACGCATCCACTCATGTTTACGGCCTT---CGAACGAATACACTCAAAATACGTTC
gi|16 : ccCCATTTTTGACGCATCTGCGCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACATTC
gi|17 : CGCCATTTTTTACCCGTCCACTCATTTTTAATGCCTA---AGAACGCATACCCTCAAAATACGa
gi|18 : cCACCATTTTTGACGCGTCTGCTCATTTTTAAAGGCTA---AGAACTCACACCTTC-AAATACGTT
gi|19 : CGCCATTTTTGACGCTTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACG
gi|2 : cCGCCATTTTCAATGCGTCCGCTCATTTTTACCGCCTT---AAAACGCAGACCCTCAAAGCATGTTCACCCC
gi|20 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACTGCTTA---AGAACGCATACCCTCCAAATAC
gi|21 : cCGCCATTTTTGACGCGTTCCCTCATTTT-ACCGCCTA---AGAACGAACACCCTCAAAATGCG
gi|22 : TTTGACGCGTCCGCTCATTTT-ACCGCCTA---AGAACGTATACCCTCAAAGTACGTTCG
gi|24 : caaCGCCATTAATTACGTGTCCCCTCATTTTTACCACCTG---AGAACGAAAGCCCTAAAA
gi|25 : cCGCCATTTTTTACGCTTCCCATCATTTTTACCGCCTA---CGAACGCATAC
gi|26 : cATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCgttcgc
gi|27 : cggtTTTTACCGCCTA---AGAACAAATACCCTGAAAATACGCCCCCCCC
gi|28 : CGCCATTTTTGACGCGTCTGCTCATTTTTAccct
gi|3 : cCGCCATTTTTGACGCATCCACTCATTTTTACCGCCTA---AGAAAGCATACCCTCAAAATATGTACGCCCC
gi|4 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGTCCC
gi|5 : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCTCc
gi|6 : GTCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACACTCAAAATACGTTCGCCTC
gi|7 : CCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCTTCATATTACATTCGCCCc
gi|8 : ctCGCCATTTTTGACACGTCCGCTCAATTTTACCGCCCA---AGAACGAATACCCTCAAAATACGTTCGCCC
gi|9 : CGCCATTTTTGACACGTCTGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATTCGTTCGCCC
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqs : .
blockSeqCons : ***
originalCons : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCCC
finalCons : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CTCCATTTATGACACATCCAATCATTCTGCCGCTTAGGAACGAATACAATCGTAATACG
Alignments
lowQualScore : 222
lowQualScore : ...
lowQualScore : 777
consensus : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCCC
Reference ( family-5026 ) : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCCC
gi|1 : CGTCATTTTTTACGCGTCCGCTCATTTTTACCCCCCATTTTTTACGCATACCTTCAAAATACGTTCGCC
gi|10 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---ATAACGCATACCCTCAAAATACATTCGCCC
gi|11 : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---CGAACGCATACCCTCAAAATACGTTCGCC
gi|12 : CGCCATTTTTTACGCGTCCGCTCATTTTTACCGTCTA---AGAACGCATGCCCTCAAAATACGTTCG
gi|13 : cCGCTATTTTTGACGCGTCCGCTCATTTTTACAGCCTA---AGAACGCATACCCTCAAAATACGTTC
gi|14 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACCTCCTA---AGAACGAATACCCTCAAAATACGTTCt
gi|15 : cCCATTTTTGACGCATCCACTCATGTTTACGGCCTT---CGAACGAATACACTCAAAATACGTTC
gi|16 : ccCCATTTTTGACGCATCTGCGCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACATTC
gi|17 : CGCCATTTTTTACCCGTCCACTCATTTTTAATGCCTA---AGAACGCATACCCTCAAAATACGa
gi|18 : cCACCATTTTTGACGCGTCTGCTCATTTTTAAAGGCTA---AGAACTCACACCTTC-AAATACGTT
gi|19 : CGCCATTTTTGACGCTTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACG
gi|2 : cCGCCATTTTCAATGCGTCCGCTCATTTTTACCGCCTT---AAAACGCAGACCCTCAAAGCATGTTCACCCC
gi|20 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACTGCTTA---AGAACGCATACCCTCCAAATAC
gi|21 : cCGCCATTTTTGACGCGTTCCCTCATTTT-ACCGCCTA---AGAACGAACACCCTCAAAATGCG
gi|22 : TTTGACGCGTCCGCTCATTTT-ACCGCCTA---AGAACGTATACCCTCAAAGTACGTTCG
gi|24 : caaCGCCATTAATTACGTGTCCCCTCATTTTTACCACCTG---AGAACGAAAGCCCTAAAA
gi|25 : cCGCCATTTTTTACGCTTCCCATCATTTTTACCGCCTA---CGAACGCATAC
gi|26 : cATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCgttcgc
gi|27 : cggtTTTTACCGCCTA---AGAACAAATACCCTGAAAATACGCCCCCCCC
gi|28 : CGCCATTTTTGACGCGTCTGCTCATTTTTAccct
gi|3 : cCGCCATTTTTGACGCATCCACTCATTTTTACCGCCTA---AGAAAGCATACCCTCAAAATATGTACGCCCC
gi|4 : cCGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGTCCC
gi|5 : CGCCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATACGTTCGCCTCc
gi|6 : GTCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACACTCAAAATACGTTCGCCTC
gi|7 : CCATTTTTGACGCGTCCGCTCATTTTTACCGCCTA---AGAACGCATACCTTCATATTACATTCGCCCc
gi|8 : ctCGCCATTTTTGACACGTCCGCTCAATTTTACCGCCCA---AGAACGAATACCCTCAAAATACGTTCGCCC
gi|9 : CGCCATTTTTGACACGTCTGCTCATTTTTACCGCCTA---AGAACGCATACCCTCAAAATTCGTTCGCCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|23 ): CTCCATTTATGACACATCCAATCATTCTGCCGCTTAGGAACGAATACAATCGTAATACG