lowQualScore : 22222222222 1111 1 7777777777777777 11111 22 2 1111111 666666666 111 2222 1 1111 77777777 3333333333333333333 444444444444444444 1 111 1 1111
lowQualScore : 7 3 66666666666 2222 0 33 888 5 777 2 0 2 777 44 8 0 5 0 2 888 8 777 8888888888888888 11111 55 4 4 4 4 1 4 4 2 4 3 6666666 11 8 2 2 8 888888888 3 111 0 2222 22 7 7777 22222222 6666666666666666666 0 222222222222222222 0 5 555 9 2 9 8 6 7777 1
lowQualScore : . . ........... .... . .. ... . ... . . . ... .. . . . . . ... . ... ................ ..... .. . . . . . . . . . . ....... .. . . . . ......... . ... . .... .. . .... ........ ................... . .................. . . ... . . . . . .... .
lowQualScore : 5 7 99999999999 2222 5 66 888 0 444 2 8 0 111 77 9 6 7 7 2 888 9 888 1111111111111111 11111 88 4 4 0 0 1 0 0 2 4 5 2222222 88 2 5 5 8 000000000 8 777 8 2222 22 0 0000 00000000 0000000000000000000 6 444444444444444444 8 0 555 2 3 0 3 0 0000 0
consensus : GGGGCCGTATTCATAAAGCTTCTTAGATT----T-----TCGCTNAGAAAATATCTTAACTCAGT---AATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAAATCTTAGCTAAGA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AAAAAA-TT----AA------CTCG-----GTAACTAA-GGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTT-G-GAAAA-TACCNTCTA-------TACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTATGTGTGTGTAGCGTGT----CTGTGTTTGTGCGTATGTGT---ATATAAAA---TATGTACATGTTAGTCACTCAACTC----GTTTTGT-TTTATGTG------T--TT--------AAATATATATGTTACTGCAACANCGTT---C---TTTGATGAGAAACTGTGTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTCG-A-AAATGTCCCTATTAAAATAGTGNTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAAC
Reference ( gi|2 ) : GGGGCCGTATTCATAAAGCTTCCTAGATT----T-----TCGCTAAGAAAATATCTTAACTCAGT---AATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGAAAAATCTTAGTTAAAA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AAAAA--------AA------CTCG-----GTAACCTA-GGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTT-G-G-AAA-TACCTTCTA-------TACTATAATCTACTTTAAATGAGTACTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACCTATGTGTGTGTAGGGTATCTAGCTGTGTTTGTGTGTATGTGT---ATATAAAC---TATGTACATGTTAGTCACTCTACTC----GTTT--------TGTG------T--TT--------AAATATATATGTTACT---ACAGTGTT---T---TTTGATGAGAAACTGTCTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTTA-A-AAATATCCCTATTTAAATAGTGTTTTGGTTATAAATGATAT----TGCCGCTGTTTTCTACTATAATATAAAC
gi|9 : GGAGCCGTATTCATAAAGCTTCTTAGATT----T-----TCGCTAA--AAATATCTTAACTCAGT---AATAATTTTCTTAGCTAAGTTGAAAACAAG--TTCTTAACTTAAGTCGTATTCATAAAACCACTAAGACAAATTTTAGTTAAGA-A-AACGTTTAAGGAAATAATAATT-CTTAGATCAAATAT---TTTATC-TA---AAAAAAAATCTT-AA------CTCG-----GTAACTAA-GGAAGTC-TG-GGATT-TCCAAATCTTAAAAAAGTATCGCAAGTGATAGTTT-A-G-AAA-TACC
gi|3 : GGGGCGTATTCATAAAGCTTCTCAAAT------------CGCTTAGAAATTATCTTAACTCAGT---AATA-TTTTCTTAGCTAAATT----ACAAT--TTCTTAATTTAGATTGGATTTATAAAACTACTAAGACAAATCTTAGCTAAAA-ATAATTT-TAAGAAAATAATAATTTCAAAGATCAAATAT---TTCATC-TTTAGGAAAATCTT----AA------CTCG-----GTTACTAA-GGAAGTC-TG-GGATT-TCCAAATCACCAAGTAGTATCGGAAGTGATAGTTT-G-G-AAAATAACATCTA-------TGCTATAATCTACTTTAAATGGGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTATGTGTGTGTAGTGTGT----CTGTATTTGTGCGTAAGTGT---ATATAAAA---TATGTACATGTTAGTCACTCAACTC----GTTTTGTATTTATGTG------T--TT--------AAATATATAGGTTACTGCAACATTGTA---T---TTTGATGAGAAACTGTGTA
gi|7 : tGGCCATTATCACAAAGATTTTTAGATC----TATACATAGCTAA----ATATCAAAATTCA------ATA-TTTTCTTAGTTAATATGAAAAAAAAAACTCTTAATTTAAGTGGCATTCACTAAACAAATAAGACAGATCTTAGCTAAAA---------TAAGAAAATTATAAGT-CTTA----AAATATAAATTCATC-TT---GAAAA--------AATCTTCACTTG-----ATAACAAA-GGAAGTC-GG-GGATT-TCCAAAACTTAAAATAGTATCTGAGGTAAAAGTTT-G-GAAAA-TGCCATATACAAATAGTAATATAA-ATACTTT
gi|5 : GCCGTATTCATAAAGCTTCTTAGATT----T-----TCGCT-----------------CAGT---AATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAATTCTTAGTTAAGA-A-AACATATAAGAAAATTATAATT-CTTATATCAAATTT---TTCATCTTT---AAAAAACTCTT--AA------CTCG-----GTAACTAA-AGGAGTG-TG-GGATT-TCGTAATCTTAAAATAGTATCGGAAGTGATAATTT-G-GAAAA-TACTTTCTA-------TACTATAATCTTCTTTAAATGAGTATTGAAATATTATTGTAGTATGTGAGCTTGTGTGTAGTTTGTTTGTGTATATATACGTATGTCTGTGTAGTGTGT----CTGTATT----TGTATGTGT---AT
gi|4 : CGTATTCATAAAGCTTCTTAAATA----T-----TCACTTAACAATTATCTTAGCTCAGC---AATA-TCTTTTTAGCTAAAATAAAAACAAT--TTCTTAATTTAAGTGGGATTCATAAAACCACTTAGACAACTCTTAGCTAAAG-A-TAAGTTTAAGAAAATGATAATT-CTTAGATCAAATAT---TTTATCTTT---AAGAAAATCTT--AA------CTCA-----GTAACTAA-GGAAGTC-TGTGGTTT-TTT--ATCTTAAAATAGCAATGGAAGTGATAGTTT-G-GAAAA-TACCGTCTA-------TGCTATAATTTACTTTAAATGAGTATTGACATGTCGATGTGGTATGTGAGCTTGTGTGTA----GTTTGTGTATATATACGTATATGTGTGTAG----------TTTGTTTGTATTTGTGTGT---ATATAAAA---TATGTACATGTAAGTAACTCAACTCTTTTGTTTTTA-----TGTG------T--TT--------AAACATATAGGTTACT---GCAACATTATAC---TTTGACGACAGACT
gi|1 : GTATTCATAAGAATTCGTA--TTCGTAT-----TCGCTGAGAAAATATCTTAACACAGT---AATA-TTTTCTTAGCTAAGATGAAAACAAA--TTTTTAACTTAAGTGGTATTCATAAGACAACTAGGACAAATCTTAGTTAAGA-A-AACGTATAAGAAAATAATAATA-CTTAGATCAAATAT---TTCATC-TT---AAAAAAAAATCATAA------CTCG-----GTAACTAA-GGAAGTC-TA-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGCTT-G-GAAAA-TACCTTCTA-------TACTATAATCTACTTT------------AAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACCTATGTGTGTGTAGCATATCTAGCTGTGTTTGTGTGTATGTAT---ATATAAAC---TATGTACATGTTAGTCATTCAACTC----GTTT--------TGTG------T--TTATGTGTTCAGATATATATGGTACTACAACAGTGTA---C---TTTGATGAGAAACTGTGTATAGTCTTCTTCCTCttgt
gi|1 : ATC----T-----TAGCTAAGAAAATATT---ACTGTGTTAAGATA-TTTTCTCAGCGAATACGAATACGAA--TTCTTAttcttcttcttttttttctatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagtgatttactttaaaaatgtccctattaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgatg
gi|11 : gtattcaAGACAATACCTTAACTCAAT---TATA-TTTTA--AGCTAAGATGAAAATAAT--TTCCTAA--TAA-TCACATTCAGTGAACCAC--AAAAACATCGTAGCTAAAATA-AAgaaaacaaatttttaacttaagtggtattcataagacaactaggacaaatcttagttaagaaaacgtataagaaaataataatacttagatcaaatatttcatcttaaaaaaaaatcataactcggtaactaaggaagtctaggatttccaaatcttaaaatagtatcggaagtgatagcttggaaaataccttctatactataatctactttaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagcatatctagctgtgtttgtgtgtatgtatatataaactatgtacatgttagtcattcaactcgttttgtgtttatgtgttcagatatatatggtactacaacagtgtactttgatgagaaactgtgtatagtcttcttcctcttcttcttcttttttttctatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagtgatttactttaaaaatgtccctattaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgatg
gi|10 : ttCTTAGCTAAGACGAAAACAAA--TTATTAACTGAAGTGGTATTCATACAACCAATAAGACAAATCTTAGTTAAGA-A-AAAATATAAGAAAATAATAATT-CTTAGATGAAATG----TTCGTC-TT---AAAAA--------AT------CTTAAATACGTAACTAA-GGAAGTCGTG-GTGTT-TTCTAACCTAAAAATAGTACCGAAAGTGATAAATT-G-ttaaaaagtttaactagttaattatggatgtcggggattgtccattcttaaatggtatcggaaaagacagtttgtaaaatattgtttat
gi|12 : aaaatcctcaacctcaacagccagtgaaacaacAAAT-T---TTCG-C-TT---AGAAA--------A-------TTCT-----GTAAC-TA-GGGAGTC-TG-GGATT-TCCAAATCTTAAAATAATATCGGAAGTGATAGTTTGG-G-AAA-TGCCTTCAA-------TACTATTATCTAATATATATGAGTA
gi|11 : -TT---AAAAAGTTT----AA------CTAG-----TTAAT-TATGGATGTC-GG-GGATTGTCCAT-TCTTAAA-TGGTATCGGAAAAGACAGTTT-GTA-AAA-TATTGTTTA-------Ttata
gi|8 : ttagacaataccttaactcaattatattttaagctaagatgaaaataatttcctaataatcacattcagtgaaccacaaaaacatcgtagctaaaataaaG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTT-G-GAAAA-TGCCTTCTA-------TA
gi|8 : TGCGTGCGTGCGTGCGTGCGAGATAGAGATAGATACGTACATGCTAGTT--TGAACTT----GTTT--------TGTGATGATGTGATT--------AAATATACATGTTACTGCAACATTGTT---A---TTCGATGAG-AATTATATATAtgtgtgtgcctatttgtgtgtgtgtgtgggggggggggggggggggggggttaacgtatagttgtatagtacatgcgtgcgtgcgtgcgtgcgagatagagatagatacgtacatgctagtttgaacttgttttgtgatgatgtgattaaatatacatgttactgcaacattgttattcgatgagaattatatatattttaagacgatagaagt
gi|6 : gggatttccaaatcttaaaatagtatcggaagtgatagtttggaaaatgccttctatatgtgtgtgcctatttgtgtgtgtgtgtgggggggggggggggggggggggttaacgtatagttgtatagtacaTGTCTATAT---AT-TAAAA---TATGTACATGTTAGTCATTCAACTC----GTTTTGTGTTTATGTG------T--TT--------AGATATGCATATTACT---GCAACATT---TTAGTTTGTTGAGAAACTGTGTATAGTCTTCTTttttaagacgatagaagt
gi|1 : CGCAGTGATTTACTTTA-A-AAATGTCCCTATTAAAATAGTGTTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAACgtctttttattcttctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacagtgaattacttaataaaacatccatactgaagtagtgatatgattata
gi|6 : gtattcataagaattcgtattcgtattcgctgagaaaatatcttaacacagtaatattttcttagctaagatgaaaacaaatttttaacttaagtggtattcataagacaactaggacaaatcttagttaagaaaacgtataagaaaataataatacttagatcaaatatttcatcttaaaaaaaaatcataactcggtaactaaggaagtctaggatttccaaatcttaaaatagtatcggaagtgatagcttggaaaataccttctatactataatctactttaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagcatatctagctgtgtttgtgtgtatgtatatataaactatgtacatgttagtcattcaactcgttttgtgtttatgtgttcagatatatatggtactacaacagtgtactttgatgagaaactgtgtatagtcttcttcctcttcttcttcttttttttctatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAGTGAATTACTTAATA-AAACATCCATACTGAAGTAGTGATATGATTATAcgatg
gi|13 : tgtctatatattaaaatatgtacatgttagtcattcaactcgttttgtgtttatgtgtttagatatgcatattactgcaacattttagtttgttgagaaactgtgtatagtcttcttgtctttttattcttctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGTGAATTACTTTG-A-AAATGTCCCTATTAAAATAGTGATTTGATTATAAATGATGT----TGCCGCTGTTTTCTACCATAATATAAAC
gi|14 : gTGAATTACTTCA------TGTCCCTATTTAAAAAGTGCTTTGATTATAAATGATAT----TGCCGCTGTTTTATACTATAATGTAAACagctgt
gi|17 : acAATTACTTTG-ATAGGT-TCCCT--TAAAATAGTGATAAGATAATAAATGATAT----TGTCGCTGcgttg
gi|16 : -AAGTGTCCCTATCAAAACAGTGCTATGATAGTAAATGATATTGTCTGTCACTGTTTTC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TATGAAATATGTCCTATTTAGTGACTCAACTTTGTTTGTATTTATGTATTTAGATATA
Alignments
lowQualScore : 11111 111 3333333 1111111 111 2222 111 22222 11 111 1111
lowQualScore : 1 66666 5 999 0 5 777 0 555 11 6 5 1 777 4 111 55 9999999 4 1 4 3 3 0 2 1 4444444 6 2 111 8888 555 5 000 5 0 66666 1 77 22 999 1 7777
lowQualScore : . ..... . ... . . ... . ... .. . . . ... . ... .. ....... . . . . . . . . ....... . . ... .... ... . ... . . ..... . .. .. ... . ....
lowQualScore : 7 00000 9 444 5 0 444 9 333 66 6 0 0 888 0 000 55 4444444 0 6 0 6 6 2 3 0 4444444 7 5 333 3333 222 7 000 7 7 66666 0 00 00 000 0 0000
consensus : GGGGCCGTATTCATAAAGCTTCTTAGATT----TTCGCTTAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAAATCTTAGCTAAGA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AA--AAAA----T--T-AACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCNTCTA-------TACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--CGTGT----CTGTGTTTGTGCGTATGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTG-TGT-TTATGTGTTTAGATATATATGTTACTGCAACATTGTANTTTGATGAGAAACTGTGTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTCG-AAAATGTCCCTATTAAAATAGTGNTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAAC
Reference ( family-5013 ) : GGGGCCGTATTCATAAAGCTTCTTAGATT----TTCGCTNAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAAATCTTAGCTAAGA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AA--AAAA----T--T-AACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCNTCTA-------TACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--CGTGT----CTGTGTTTGTGCGTATGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTG-T-T-TTATGTGTTTAAATATATATGTTACTGCAACANCGTTCTTTGATGAGAAACTGTGTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTCG-AAAATGTCCCTATTAAAATAGTGNTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAAC
gi|1 : GTATTCATAAGAATTCGTA--TTCGTATTCGCTGAGA-AAATATCTTAACACAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTTTTAACTTAAGTGGTATTCATAAGACAACTAGGACAAATCTTAGTTAAGA-A-AACGTATAAGAAAATAATAATA-CTTAGATCAAATAT---TTCATC-TTAAAAA--AAAA----TCAT-AACTCGGTAACTAAGGAAGTC-TA-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGCTTGGAAAATACCTTCTA-------TACTATAATCTACTTT------------AAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACCTAT-GTGTGTGTAG--CATATCTAGCTGTGTTTGTGTGTATGTATATAT-AAA---CTATGTAC-ATGTTAGTCATTCAACTCGTTTTG-TGT-TTATGTGTTCAGATATATATGGTACTACAACAGTGTACTTTGATGAGAAACTGTGTATAGTCTTCTTCCTC
gi|1 : CGCAGTGATTTACTTTA-AAAATGTCCCTATTAAAATAGTGTTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAACttcttcttcttttttttctatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagtgatttactttaaaaatgtccctattaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgatg
gi|10 : gtattcataagaattcgtattcgtattcgctgagaaaatatcttaacacagtaatattttcttagctaagatgaaaacaaatttttaacttaagtggtattcataagacaactaggacaaatcttagttaagaaaacgtataagaaaataataatacttagatcaaatatttcatcttaaaaaaaaatcataactcggtaactaaggaagtctaggatttccaaatcttaaaatagtatcggaagtgatagcttggaaaataccttctatactataatctactttaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagcatatctagctgtgtttgtgtgtatgtatatataaactatgtacatgttagtcattcaactcgttttgtgtttatgtgttcagatatatatggtactacaacagtgtactttgatgagaaactgtgtatagtcttcttcctcttcttcttcttttttttctatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTAGCTAAGACGAAAACAAA--TTATTAACTGAAGTGGTATTCATACAACCAATAAGACAAATCTTAGTTAAGA-A-AAAATATAAGAAAATAATAATT-CTTAGATGAAATG----TTCGTC-TT---AA--AAAATC--T--T-AAATACGTAACTAAGGAAGTCGTG-GTGTT-TTCTAACCTAAAAATAGTACCGAAAGTGATAAATTGcgatg
gi|11 : aaaatcctcaacctcaacagccagtgaaacaacTTAGA-CAATACCTTAACTCAATTATA-TTTTA--AGCTAAGATGAAAATAAT--TTCCTAA--TAA-TCACATTCAGTGAACCACAAAAAC--ATCGTAGCTAAAATA-AA
gi|11 : -TT---AA--AAAG----T--TTAACTAGTTAATTATGGATGTC-GG-GGATTGTCCAT-TCTTA-AATGGTATCGGAAAAGACAGTTTGTAAAATATTGTTTA-------Tttaaaaagtttaactagttaattatggatgtcggggattgtccattcttaaatggtatcggaaaagacagtttgtaaaatattgtttat
gi|12 : ttagacaataccttaactcaattatattttaagctaagatgaaaataatttcctaataatcacattcagtgaaccacaaaaacatcgtagctaaaataaaAAAT-T---TTCG-C-TT---AG--AAAA----T--T---CT--GTAACTAGGGA-GTC-TG-GGATT-TCCAAATCTTAAAATAATATCGGAAGTGATAGTTTGGGAAATGCCTTCAA-------TACTATTATCTAATATATATGAGTAT
gi|13 : GTGAATTACTTTG-AAAATGTCCCTATTAAAATAGTGATTTGATTATAAATGATGT----TGCCGCTGTTTTCTACCATAATATAAACata
gi|14 : gTGAATTACTTC-----ATGTCCCTATTTAAAAAGTGCTTTGATTATAAATGATAT----TGCCGCTGTTTTATACTATAATGTAAACagctgt
gi|15 : acTAT-GAA---ATATGTCCTAT-TTAGTGACTCAACTTTGTTTG-TAT-TTATGTATTTAGATATAcgttg
gi|16 : AAGTGTCCCTATCAAAACAGTGCTATGATAGTAAATGATATTGTCTGTCACTGTTTTC
gi|17 : AATTACTTTG-ATAGGTTCCCT--TAAAATAGTGATAAGATAATAAATGATAT----TGTCGCTG
gi|2 : GGGGCCGTATTCATAAAGCTTCCTAGATT----TTCGCTAAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGAAAAATCTTAGTTAAAA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AA--AAA----------AACTCGGTAACCTAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGG-AAATACCTTCTA-------TACTATAATCTACTTTAAATGAGTACTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACCTAT-GTGTGTGTAG--GGTATCTAGCTGTGTTTGTGTGTATGTGTATAT-AAA---CTATGTAC-ATGTTAGTCACTCTACTCGTTT----------TGTGTTTAAATATATATGTTACT---ACAGTGTTTTTTGATGAGAAACTGTCTATAGTCTTCTTCCTC
gi|3 : GGGGCGTATTCATAAAGCTTCTCAAAT-------CGCTTAGA-AATTATCTTAACTCAGTAATA-TTTTCTTAGCTAAATT----ACAAT--TTCTTAATTTAGATTGGATTTATAAAACTACTAAGACAAATCTTAGCTAAAA-ATAATTT-TAAGAAAATAATAATTTCAAAGATCAAATAT---TTCATC-TT---TAGGAAAA----TCTT-AACTCGGTTACTAAGGAAGTC-TG-GGATT-TCCAAATCACCAAGTAGTATCGGAAGTGATAGTTTGGAAAATAACATCTA-------TGCTATAATCTACTTTAAATGGGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--TGTGT----CTGTATTTGTGCGTAAGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTG-TAT-TTATGTGTTTAAATATATAGGTTACTGCAACATTGTATTTTGATGAGAAACTGTGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagtgaattactttaaaaatatccctatttaaatagtgttttggttataaatgatattgccgctgttttctactataatataaac
gi|4 : tCGTATTCATAAAGCTTCTTAAATA----TTCACTTAAC-AATTATCTTAGCTCAGCAATA-TCTTTTTAGCTAAAATAAAAACAAT--TTCTTAATTTAAGTGGGATTCATAAAACCACTTAGACAACTCTTAGCTAAAG-A-TAAGTTTAAGAAAATGATAATT-CTTAGATCAAATAT---TTTATCTTT---AA--GAAAATC-T--T-AACTCAGTAACTAAGGAAGTC-TGTGGTTT-TTT--ATCTTAAAATAGCAATGGAAGTGATAGTTTGGAAAATACCGTCTA-------TGCTATAATTTACTTTAAATGAGTATTGACATGTCGATGTGGTATGTGAGCTTGTGTGTA----GTTTGTGTATATATACGTAT-ATGTGTGTAG--TTTGT----TTGTATTTG------TGTGTATAT-AAA---ATATGTAC-ATGTAAGTAACTCAACTC-TTTTGTT-T-TTATGTGTTTAAACATATAGGTTACTGCAACATTATACTTTGACGACAGACTTTGT
gi|5 : GCCGTATTCATAAAGCTTCTTAGATT----TTCGCT------------------CAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAATTCTTAGTTAAGA-A-AACATATAAGAAAATTATAATT-CTTATATCAAATTT---TTCATC-TTT--AA--AAAACTC-T--T-AACTCGGTAACTAAAGGAGTG-TG-GGATT-TCGTAATCTTAAAATAGTATCGGAAGTGATAATTTGGAAAATACTTTCTA-------TACTATAATCTTCTTTAAATGAGTATTGAAATATTATTGTAGTATGTGAGCTTGTGTGTAGTTTGTTTGTGTATATATACGTAT-GTCTGTGTAG--TGTGT----CTGTATTT----GTATGTGTAT
gi|6 : TATATATTAAA---ATATGTAC-ATGTTAGTCATTCAACTCGTTTTG-TGT-TTATGTGTTTAGATATGCATATTACTGCAACATTTTAGTTTGTTGAGAAACTGTGTATAGTCTTCTT
gi|6 : tgtcCAGTGAATTACTTAATAAAACATCCATACTGAAGTAGTGATATGATTATAgtctttttattcttctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacagtgaattacttaataaaacatccatactgaagtagtgatatgattata
gi|7 : tgtctatatattaaaatatgtacatgttagtcattcaactcgttttgtgtttatgtgtttagatatgcatattactgcaacattttagtttgttgagaaactgtgtatagtcttcttgtctttttattcttctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGGCCATTATCACAAAGATTTTTAGATC----TATACATAGCTAAATATCAAAATTCA---ATA-TTTTCTTAGTTAATATGAAAAAAAAAACTCTTAATTTAAGTGGCATTCACTAAACAAATAAGACAGATCTTAGCTAAAA---------TAAGAAAATTATAAGT-CTTA----AAATATAAATTCATC-TT---GA--AAAAATC-T--T-CACTTGATAACAAAGGAAGTC-GG-GGATT-TCCAAAACTTAAAATAGTATCTGAGGTAAAAGTTTGGAAAATGCCATATACAAATAGTAATATAA-ATACTTT
gi|8 : G-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATGCCTTCTA-------TA
gi|8 : ACGTATAGT-TGTATAGTACATGC----GTGCGTGCGTGCGTGCGAG-ATAG-AGATAGATACGTAC-ATGCTAGTT--TGAACTTGTTTTG-T-GATGATGTGATTAAATATACATGTTACTGCAACATTGTTATTCGATGAG-AATTATATATAtgtgtgtgcctatttgtgtgtgtgtgtgggggggggggggggggggggggttaacgtatagttgtatagtacatgcgtgcgtgcgtgcgtgcgagatagagatagatacgtacatgctagtttgaacttgttttgtgatgatgtgattaaatatacatgttactgcaacattgttattcgatgagaattatatatattttaagacgatagaagt
gi|9 : gggatttccaaatcttaaaatagtatcggaagtgatagtttggaaaatgccttctatatgtgtgtgcctatttgtgtgtgtgtgtgggggggggggggggggggggggttaGGAGCCGTATTCATAAAGCTTCTTAGATT----TTCGCTAA---AAATATCTTAACTCAGTAATAATTTTCTTAGCTAAGTTGAAAACAAG--TTCTTAACTTAAGTCGTATTCATAAAACCACTAAGACAAATTTTAGTTAAGA-A-AACGTTTAAGGAAATAATAATT-CTTAGATCAAATAT---TTTATC-TA---AA--AAAAAATCT--T-AACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAAAAGTATCGCAAGTGATAGTTTAG-AAATACCttttaagacgatagaagt
Alignments
lowQualScore : 11111 111 3333333 1111111 111 2222 111 111 1111
lowQualScore : 1 66666 9 5 0 5 777 0 555 11 6 5 1 777 4 111 55 9999999 4 1 4 3 3 0 2 1 4444444 6 2 111 8888 555 5 000 5 0 1 1 1 999 1 7777
lowQualScore : . ..... . . . . ... . ... .. . . . ... . ... .. ....... . . . . . . . . ....... . . ... .... ... . ... . . . . . ... . ....
lowQualScore : 7 00000 5 0 5 0 444 9 333 66 6 0 0 888 0 000 55 4444444 0 6 0 6 6 2 3 0 4444444 7 5 333 3333 222 7 000 7 7 7 0 0 000 0 0000
consensus : GGGGCCGTATTCATAAAGCTTCTTAGATT----TTCGCTTAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAAATCTTAGCTAAGA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AA--AAAA----T--T-AACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCNTCTA-------TACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--CGTGT----CTGTGTTTGTGCGTATGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATGTTACTGCAACATTGTANTTTGATGAGAAACTGTGTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTCG-AAAATGTCCCTATTAAAATAGTGNTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAAC
Reference ( family-5013 ) : GGGGCCGTATTCATAAAGCTTCTTAGATT----TTCGCTTAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAAATCTTAGCTAAGA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AA--AAAA----T--T-AACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCNTCTA-------TACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--CGTGT----CTGTGTTTGTGCGTATGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATGTTACTGCAACATTGTANTTTGATGAGAAACTGTGTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTCG-AAAATGTCCCTATTAAAATAGTGNTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAAC
gi|1 : GTATTCATAAGAATTCGTA--TTCGTATTCGCTGAGA-AAATATCTTAACACAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTTTTAACTTAAGTGGTATTCATAAGACAACTAGGACAAATCTTAGTTAAGA-A-AACGTATAAGAAAATAATAATA-CTTAGATCAAATAT---TTCATC-TTAAAAA--AAAA----TCAT-AACTCGGTAACTAAGGAAGTC-TA-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGCTTGGAAAATACCTTCTA-------TACTATAATCTACTTT------------AAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACCTAT-GTGTGTGTAG--CATATCTAGCTGTGTTTGTGTGTATGTATATAT-AAA---CTATGTAC-ATGTTAGTCATTCAACTCGTTTTGTGTTTATGTGTTCAGATATATATGGTACTACAACAGTGTACTTTGATGAGAAACTGTGTATAGTCTTCTTCCTC
gi|1 : CGCAGTGATTTACTTTA-AAAATGTCCCTATTAAAATAGTGTTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAACttcttcttcttttttttctatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagtgatttactttaaaaatgtccctattaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgatg
gi|10 : gtattcataagaattcgtattcgtattcgctgagaaaatatcttaacacagtaatattttcttagctaagatgaaaacaaatttttaacttaagtggtattcataagacaactaggacaaatcttagttaagaaaacgtataagaaaataataatacttagatcaaatatttcatcttaaaaaaaaatcataactcggtaactaaggaagtctaggatttccaaatcttaaaatagtatcggaagtgatagcttggaaaataccttctatactataatctactttaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagcatatctagctgtgtttgtgtgtatgtatatataaactatgtacatgttagtcattcaactcgttttgtgtttatgtgttcagatatatatggtactacaacagtgtactttgatgagaaactgtgtatagtcttcttcctcttcttcttcttttttttctatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTAGCTAAGACGAAAACAAA--TTATTAACTGAAGTGGTATTCATACAACCAATAAGACAAATCTTAGTTAAGA-A-AAAATATAAGAAAATAATAATT-CTTAGATGAAATG----TTCGTC-TT---AA--AAAATC--T--T-AAATACGTAACTAAGGAAGTCGTG-GTGTT-TTCTAACCTAAAAATAGTACCGAAAGTGATAAATTGcgatg
gi|11 : aaaatcctcaacctcaacagccagtgaaacaacTTAGA-CAATACCTTAACTCAATTATA-TTTTA--AGCTAAGATGAAAATAAT--TTCCTAA--TAA-TCACATTCAGTGAACCACAAAAAC--ATCGTAGCTAAAATA-AA
gi|11 : -TT---AA--AAAG----T--TTAACTAGTTAATTATGGATGTC-GG-GGATTGTCCAT-TCTTA-AATGGTATCGGAAAAGACAGTTTGTAAAATATTGTTTA-------Tttaaaaagtttaactagttaattatggatgtcggggattgtccattcttaaatggtatcggaaaagacagtttgtaaaatattgtttat
gi|12 : ttagacaataccttaactcaattatattttaagctaagatgaaaataatttcctaataatcacattcagtgaaccacaaaaacatcgtagctaaaataaaAAAT-T---TTCG-C-TT---AG--AAAA----T--T---CT--GTAACTAGGGA-GTC-TG-GGATT-TCCAAATCTTAAAATAATATCGGAAGTGATAGTTTGGGAAATGCCTTCAA-------TACTATTATCTAATATATATGAGTAT
gi|13 : GTGAATTACTTTG-AAAATGTCCCTATTAAAATAGTGATTTGATTATAAATGATGT----TGCCGCTGTTTTCTACCATAATATAAACata
gi|14 : gTGAATTACTTC-----ATGTCCCTATTTAAAAAGTGCTTTGATTATAAATGATAT----TGCCGCTGTTTTATACTATAATGTAAACagctgt
gi|15 : acTAT-GAA---ATATGTCCTAT-TTAGTGACTCAACTTTGTTTGTATTTATGTATTTAGATATAcgttg
gi|16 : AAGTGTCCCTATCAAAACAGTGCTATGATAGTAAATGATATTGTCTGTCACTGTTTTC
gi|17 : AATTACTTTG-ATAGGTTCCCT--TAAAATAGTGATAAGATAATAAATGATAT----TGTCGCTG
gi|2 : GGGGCCGTATTCATAAAGCTTCCTAGATT----TTCGCTAAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGAAAAATCTTAGTTAAAA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AA--AAA----------AACTCGGTAACCTAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGG-AAATACCTTCTA-------TACTATAATCTACTTTAAATGAGTACTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACCTAT-GTGTGTGTAG--GGTATCTAGCTGTGTTTGTGTGTATGTGTATAT-AAA---CTATGTAC-ATGTTAGTCACTCTACTCGTTT--------TGTGTTTAAATATATATGTTACT---ACAGTGTTTTTTGATGAGAAACTGTCTATAGTCTTCTTCCTC
gi|3 : GGGGCGTATTCATAAAGCTTCTCAAAT-------CGCTTAGA-AATTATCTTAACTCAGTAATA-TTTTCTTAGCTAAATT----ACAAT--TTCTTAATTTAGATTGGATTTATAAAACTACTAAGACAAATCTTAGCTAAAA-ATAATTT-TAAGAAAATAATAATTTCAAAGATCAAATAT---TTCATC-TT---TAGGAAAA----TCTT-AACTCGGTTACTAAGGAAGTC-TG-GGATT-TCCAAATCACCAAGTAGTATCGGAAGTGATAGTTTGGAAAATAACATCTA-------TGCTATAATCTACTTTAAATGGGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--TGTGT----CTGTATTTGTGCGTAAGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTGTATTTATGTGTTTAAATATATAGGTTACTGCAACATTGTATTTTGATGAGAAACTGTGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagtgaattactttaaaaatatccctatttaaatagtgttttggttataaatgatattgccgctgttttctactataatataaac
gi|4 : tCGTATTCATAAAGCTTCTTAAATA----TTCACTTAAC-AATTATCTTAGCTCAGCAATA-TCTTTTTAGCTAAAATAAAAACAAT--TTCTTAATTTAAGTGGGATTCATAAAACCACTTAGACAACTCTTAGCTAAAG-A-TAAGTTTAAGAAAATGATAATT-CTTAGATCAAATAT---TTTATCTTT---AA--GAAAATC-T--T-AACTCAGTAACTAAGGAAGTC-TGTGGTTT-TTT--ATCTTAAAATAGCAATGGAAGTGATAGTTTGGAAAATACCGTCTA-------TGCTATAATTTACTTTAAATGAGTATTGACATGTCGATGTGGTATGTGAGCTTGTGTGTA----GTTTGTGTATATATACGTAT-ATGTGTGTAG--TTTGT----TTGTATTTG------TGTGTATAT-AAA---ATATGTAC-ATGTAAGTAACTCAACTC-TTTTGTTTTTATGTGTTTAAACATATAGGTTACTGCAACATTATACTTTGACGACAGACTTTGT
gi|5 : GCCGTATTCATAAAGCTTCTTAGATT----TTCGCT------------------CAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAATTCTTAGTTAAGA-A-AACATATAAGAAAATTATAATT-CTTATATCAAATTT---TTCATC-TTT--AA--AAAACTC-T--T-AACTCGGTAACTAAAGGAGTG-TG-GGATT-TCGTAATCTTAAAATAGTATCGGAAGTGATAATTTGGAAAATACTTTCTA-------TACTATAATCTTCTTTAAATGAGTATTGAAATATTATTGTAGTATGTGAGCTTGTGTGTAGTTTGTTTGTGTATATATACGTAT-GTCTGTGTAG--TGTGT----CTGTATTT----GTATGTGTAT
gi|6 : TATATATTAAA---ATATGTAC-ATGTTAGTCATTCAACTCGTTTTGTGTTTATGTGTTTAGATATGCATATTACTGCAACATTTTAGTTTGTTGAGAAACTGTGTATAGTCTTCTT
gi|6 : tgtcCAGTGAATTACTTAATAAAACATCCATACTGAAGTAGTGATATGATTATAgtctttttattcttctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacagtgaattacttaataaaacatccatactgaagtagtgatatgattata
gi|7 : tgtctatatattaaaatatgtacatgttagtcattcaactcgttttgtgtttatgtgtttagatatgcatattactgcaacattttagtttgttgagaaactgtgtatagtcttcttgtctttttattcttctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGGCCATTATCACAAAGATTTTTAGATC----TATACATAGCTAAATATCAAAATTCA---ATA-TTTTCTTAGTTAATATGAAAAAAAAAACTCTTAATTTAAGTGGCATTCACTAAACAAATAAGACAGATCTTAGCTAAAA---------TAAGAAAATTATAAGT-CTTA----AAATATAAATTCATC-TT---GA--AAAAATC-T--T-CACTTGATAACAAAGGAAGTC-GG-GGATT-TCCAAAACTTAAAATAGTATCTGAGGTAAAAGTTTGGAAAATGCCATATACAAATAGTAATATAA-ATACTTT
gi|8 : G-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATGCCTTCTA-------TA
gi|8 : ACGTATAGT-TGTATAGTACATGC----GTGCGTGCGTGCGTGCGAG-ATAG-AGATAGATACGTAC-ATGCTAGTT--TGAACTTGTTTTGTGATGATGTGATTAAATATACATGTTACTGCAACATTGTTATTCGATGAG-AATTATATATAtgtgtgtgcctatttgtgtgtgtgtgtgggggggggggggggggggggggttaacgtatagttgtatagtacatgcgtgcgtgcgtgcgtgcgagatagagatagatacgtacatgctagtttgaacttgttttgtgatgatgtgattaaatatacatgttactgcaacattgttattcgatgagaattatatatattttaagacgatagaagt
gi|9 : gggatttccaaatcttaaaatagtatcggaagtgatagtttggaaaatgccttctatatgtgtgtgcctatttgtgtgtgtgtgtgggggggggggggggggggggggttaGGAGCCGTATTCATAAAGCTTCTTAGATT----TTCGCT--AA-AAATATCTTAACTCAGTAATAATTTTCTTAGCTAAGTTGAAAACAAG--TTCTTAACTTAAGTCGTATTCATAAAACCACTAAGACAAATTTTAGTTAAGA-A-AACGTTTAAGGAAATAATAATT-CTTAGATCAAATAT---TTTATC-TA---AA--AAAAAATCT--T-AACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAAAAGTATCGCAAGTGATAGTTTAG-AAATACCttttaagacgatagaagt
Alignments
lowQualScore : 11111 111 3333333 1111111 111 2222 111 111 1111
lowQualScore : 1 66666 9 5 0 5 777 0 555 11 6 5 1 777 4 111 55 9999999 4 1 4 3 3 0 2 1 4444444 6 2 111 8888 555 5 000 5 0 1 1 1 999 1 7777
lowQualScore : . ..... . . . . ... . ... .. . . . ... . ... .. ....... . . . . . . . . ....... . . ... .... ... . ... . . . . . ... . ....
lowQualScore : 7 00000 5 0 5 0 444 9 333 66 6 0 0 888 0 000 55 4444444 0 6 0 6 6 2 3 0 4444444 7 5 333 3333 222 7 000 7 7 7 0 0 000 0 0000
consensus : GGGGCCGTATTCATAAAGCTTCTTAGATT----TTCGCTTAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAAATCTTAGCTAAGA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AA--AAAA----T--T-AACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCNTCTA-------TACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--CGTGT----CTGTGTTTGTGCGTATGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATGTTACTGCAACATTGTANTTTGATGAGAAACTGTGTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTCG-AAAATGTCCCTATTAAAATAGTGNTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAAC
Reference ( family-5013 ) : GGGGCCGTATTCATAAAGCTTCTTAGATT----TTCGCTTAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAAATCTTAGCTAAGA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AA--AAAA----T--T-AACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCNTCTA-------TACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--CGTGT----CTGTGTTTGTGCGTATGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATGTTACTGCAACATTGTANTTTGATGAGAAACTGTGTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTCG-AAAATGTCCCTATTAAAATAGTGNTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAAC
gi|1 : GTATTCATAAGAATTCGTA--TTCGTATTCGCTGAGA-AAATATCTTAACACAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTTTTAACTTAAGTGGTATTCATAAGACAACTAGGACAAATCTTAGTTAAGA-A-AACGTATAAGAAAATAATAATA-CTTAGATCAAATAT---TTCATC-TTAAAAA--AAAA----TCAT-AACTCGGTAACTAAGGAAGTC-TA-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGCTTGGAAAATACCTTCTA-------TACTATAATCTACTTT------------AAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACCTAT-GTGTGTGTAG--CATATCTAGCTGTGTTTGTGTGTATGTATATAT-AAA---CTATGTAC-ATGTTAGTCATTCAACTCGTTTTGTGTTTATGTGTTCAGATATATATGGTACTACAACAGTGTACTTTGATGAGAAACTGTGTATAGTCTTCTTCCTC
gi|1 : CGCAGTGATTTACTTTA-AAAATGTCCCTATTAAAATAGTGTTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAACttcttcttcttttttttctatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagtgatttactttaaaaatgtccctattaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgatg
gi|10 : gtattcataagaattcgtattcgtattcgctgagaaaatatcttaacacagtaatattttcttagctaagatgaaaacaaatttttaacttaagtggtattcataagacaactaggacaaatcttagttaagaaaacgtataagaaaataataatacttagatcaaatatttcatcttaaaaaaaaatcataactcggtaactaaggaagtctaggatttccaaatcttaaaatagtatcggaagtgatagcttggaaaataccttctatactataatctactttaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagcatatctagctgtgtttgtgtgtatgtatatataaactatgtacatgttagtcattcaactcgttttgtgtttatgtgttcagatatatatggtactacaacagtgtactttgatgagaaactgtgtatagtcttcttcctcttcttcttcttttttttctatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTAGCTAAGACGAAAACAAA--TTATTAACTGAAGTGGTATTCATACAACCAATAAGACAAATCTTAGTTAAGA-A-AAAATATAAGAAAATAATAATT-CTTAGATGAAATG----TTCGTC-TT---AA--AAAATC--T--T-AAATACGTAACTAAGGAAGTCGTG-GTGTT-TTCTAACCTAAAAATAGTACCGAAAGTGATAAATTGcgatg
gi|11 : aaaatcctcaacctcaacagccagtgaaacaacTTAGA-CAATACCTTAACTCAATTATA-TTTTA--AGCTAAGATGAAAATAAT--TTCCTAA--TAA-TCACATTCAGTGAACCACAAAAAC--ATCGTAGCTAAAATA-AA
gi|11 : -TT---AA--AAAG----T--TTAACTAGTTAATTATGGATGTC-GG-GGATTGTCCAT-TCTTA-AATGGTATCGGAAAAGACAGTTTGTAAAATATTGTTTA-------Tttaaaaagtttaactagttaattatggatgtcggggattgtccattcttaaatggtatcggaaaagacagtttgtaaaatattgtttat
gi|12 : ttagacaataccttaactcaattatattttaagctaagatgaaaataatttcctaataatcacattcagtgaaccacaaaaacatcgtagctaaaataaaAAAT-T---TTCG-C-TT---AG--AAAA----T--T---CT--GTAACTAGGGA-GTC-TG-GGATT-TCCAAATCTTAAAATAATATCGGAAGTGATAGTTTGGGAAATGCCTTCAA-------TACTATTATCTAATATATATGAGTAT
gi|13 : GTGAATTACTTTG-AAAATGTCCCTATTAAAATAGTGATTTGATTATAAATGATGT----TGCCGCTGTTTTCTACCATAATATAAACata
gi|14 : gTGAATTACTTC-----ATGTCCCTATTTAAAAAGTGCTTTGATTATAAATGATAT----TGCCGCTGTTTTATACTATAATGTAAACagctgt
gi|15 : acTAT-GAA---ATATGTCCTAT-TTAGTGACTCAACTTTGTTTGTATTTATGTATTTAGATATAcgttg
gi|16 : AAGTGTCCCTATCAAAACAGTGCTATGATAGTAAATGATATTGTCTGTCACTGTTTTC
gi|17 : AATTACTTTG-ATAGGTTCCCT--TAAAATAGTGATAAGATAATAAATGATAT----TGTCGCTG
gi|2 : GGGGCCGTATTCATAAAGCTTCCTAGATT----TTCGCTAAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGAAAAATCTTAGTTAAAA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AA--AAA----------AACTCGGTAACCTAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGG-AAATACCTTCTA-------TACTATAATCTACTTTAAATGAGTACTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACCTAT-GTGTGTGTAG--GGTATCTAGCTGTGTTTGTGTGTATGTGTATAT-AAA---CTATGTAC-ATGTTAGTCACTCTACTCGTTT--------TGTGTTTAAATATATATGTTACT---ACAGTGTTTTTTGATGAGAAACTGTCTATAGTCTTCTTCCTC
gi|3 : GGGGCGTATTCATAAAGCTTCTCAAAT-------CGCTTAGA-AATTATCTTAACTCAGTAATA-TTTTCTTAGCTAAATT----ACAAT--TTCTTAATTTAGATTGGATTTATAAAACTACTAAGACAAATCTTAGCTAAAA-ATAATTT-TAAGAAAATAATAATTTCAAAGATCAAATAT---TTCATC-TT---TAGGAAAA----TCTT-AACTCGGTTACTAAGGAAGTC-TG-GGATT-TCCAAATCACCAAGTAGTATCGGAAGTGATAGTTTGGAAAATAACATCTA-------TGCTATAATCTACTTTAAATGGGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--TGTGT----CTGTATTTGTGCGTAAGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTGTATTTATGTGTTTAAATATATAGGTTACTGCAACATTGTATTTTGATGAGAAACTGTGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagtgaattactttaaaaatatccctatttaaatagtgttttggttataaatgatattgccgctgttttctactataatataaac
gi|4 : tCGTATTCATAAAGCTTCTTAAATA----TTCACTTAAC-AATTATCTTAGCTCAGCAATA-TCTTTTTAGCTAAAATAAAAACAAT--TTCTTAATTTAAGTGGGATTCATAAAACCACTTAGACAACTCTTAGCTAAAG-A-TAAGTTTAAGAAAATGATAATT-CTTAGATCAAATAT---TTTATCTTT---AA--GAAAATC-T--T-AACTCAGTAACTAAGGAAGTC-TGTGGTTT-TTT--ATCTTAAAATAGCAATGGAAGTGATAGTTTGGAAAATACCGTCTA-------TGCTATAATTTACTTTAAATGAGTATTGACATGTCGATGTGGTATGTGAGCTTGTGTGTA----GTTTGTGTATATATACGTAT-ATGTGTGTAG--TTTGT----TTGTATTTG------TGTGTATAT-AAA---ATATGTAC-ATGTAAGTAACTCAACTC-TTTTGTTTTTATGTGTTTAAACATATAGGTTACTGCAACATTATACTTTGACGACAGACTTTGT
gi|5 : GCCGTATTCATAAAGCTTCTTAGATT----TTCGCT------------------CAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAATTCTTAGTTAAGA-A-AACATATAAGAAAATTATAATT-CTTATATCAAATTT---TTCATC-TTT--AA--AAAACTC-T--T-AACTCGGTAACTAAAGGAGTG-TG-GGATT-TCGTAATCTTAAAATAGTATCGGAAGTGATAATTTGGAAAATACTTTCTA-------TACTATAATCTTCTTTAAATGAGTATTGAAATATTATTGTAGTATGTGAGCTTGTGTGTAGTTTGTTTGTGTATATATACGTAT-GTCTGTGTAG--TGTGT----CTGTATTT----GTATGTGTAT
gi|6 : TATATATTAAA---ATATGTAC-ATGTTAGTCATTCAACTCGTTTTGTGTTTATGTGTTTAGATATGCATATTACTGCAACATTTTAGTTTGTTGAGAAACTGTGTATAGTCTTCTT
gi|6 : tgtcCAGTGAATTACTTAATAAAACATCCATACTGAAGTAGTGATATGATTATAgtctttttattcttctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacagtgaattacttaataaaacatccatactgaagtagtgatatgattata
gi|7 : tgtctatatattaaaatatgtacatgttagtcattcaactcgttttgtgtttatgtgtttagatatgcatattactgcaacattttagtttgttgagaaactgtgtatagtcttcttgtctttttattcttctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGGCCATTATCACAAAGATTTTTAGATC----TATACATAGCTAAATATCAAAATTCA---ATA-TTTTCTTAGTTAATATGAAAAAAAAAACTCTTAATTTAAGTGGCATTCACTAAACAAATAAGACAGATCTTAGCTAAAA---------TAAGAAAATTATAAGT-CTTA----AAATATAAATTCATC-TT---GA--AAAAATC-T--T-CACTTGATAACAAAGGAAGTC-GG-GGATT-TCCAAAACTTAAAATAGTATCTGAGGTAAAAGTTTGGAAAATGCCATATACAAATAGTAATATAA-ATACTTT
gi|8 : G-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATGCCTTCTA-------TA
gi|8 : ACGTATAGT-TGTATAGTACATGC----GTGCGTGCGTGCGTGCGAG-ATAG-AGATAGATACGTAC-ATGCTAGTT--TGAACTTGTTTTGTGATGATGTGATTAAATATACATGTTACTGCAACATTGTTATTCGATGAG-AATTATATATAtgtgtgtgcctatttgtgtgtgtgtgtgggggggggggggggggggggggttaacgtatagttgtatagtacatgcgtgcgtgcgtgcgtgcgagatagagatagatacgtacatgctagtttgaacttgttttgtgatgatgtgattaaatatacatgttactgcaacattgttattcgatgagaattatatatattttaagacgatagaagt
gi|9 : gggatttccaaatcttaaaatagtatcggaagtgatagtttggaaaatgccttctatatgtgtgtgcctatttgtgtgtgtgtgtgggggggggggggggggggggggttaGGAGCCGTATTCATAAAGCTTCTTAGATT----TTCGCT--AA-AAATATCTTAACTCAGTAATAATTTTCTTAGCTAAGTTGAAAACAAG--TTCTTAACTTAAGTCGTATTCATAAAACCACTAAGACAAATTTTAGTTAAGA-A-AACGTTTAAGGAAATAATAATT-CTTAGATCAAATAT---TTTATC-TA---AA--AAAAAATCT--T-AACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAAAAGTATCGCAAGTGATAGTTTAG-AAATACCttttaagacgatagaagt
blockSeqs : G T T T A AAA TA AA A T G AAA T T GG AATCT T A G T G A G CAAATAG A G TAC CTAG TGT T TAG T A G T AAT A TGTC
blockSeqs : A A A . . A AT CG A . A . . . . ATCT . A . . . G T . . G G . TGC . . . A G T TG C .
blockSeqs : A T T . . T A TT T . A . . . . CTCT . C . . . A T . . G T . TGC . . . T G C TG C .
blockSeqs : G C T . . A A AG A . A . . . . ATCT . C . . . A A . . C T . . . . . G G G C A .
blockSeqs : G T T . . T A CA T . T . . . . TCT . C . . . A G . . . T . . . . . G . A A
blockSeqs : G . . . . T A CG . . A . . . . TCT . C . . . A T . . . . .
blockSeqs : . . . A A . . . A . . . . T . T . . . A A .
blockSeqs : G . . . . . . T . C . . . . T .
blockSeqs : . . . . . . . . . .
blockSeqs : . .
blockSeqCons : T**** *** TCT**** ****
originalCons : GGGGCCGTATTCATAAAGCTTCTTAGATT----TTCGCTTAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAAATCTTAGCTAAGA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AA--AAAA----T--T-AACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCNTCTA-------TACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--CGTGT----CTGTGTTTGTGCGTATGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATGTTACTGCAACATTGTANTTTGATGAGAAACTGTGTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTCG-AAAATGTCCCTATTAAAATAGTGNTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAAC
finalCons : GGGGCCGTATTCATAAAGCTTCTTAGATT----TTCGCTTAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAAATCTTAGCTAAGA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATC-TT---AA--AAAATCT----T-AACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCNTCTA-------TACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--CGTGT----CTGTGTTTGTGCGTATGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATGTTACTGCAACATTGTANTTTGATGAGAAACTGTGTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTCG-AAAATGTCCCTATTAAAATAGTGNTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAAC
Alignments
lowQualScore : 11111 222 1111111 111 2222 111 111 1111
lowQualScore : 1 66666 9 5 0 5 777 0 555 11 6 5 1 777 55 000 55 4 2 4 3 3 0 2 1 4444444 6 2 111 8888 555 5 000 5 0 1 1 1 999 1 7777
lowQualScore : . ..... . . . . ... . ... .. . . . ... .. ... .. . . . . . . . . ....... . . ... .... ... . ... . . . . . ... . ....
lowQualScore : 7 00000 5 0 5 0 444 9 333 66 6 0 0 888 55 555 55 0 5 0 6 6 2 3 0 4444444 7 5 333 3333 222 7 000 7 7 7 0 0 000 0 0000
consensus : GGGGCCGTATTCATAAAGCTTCTTAGATT----TTCGCTTAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAAATCTTAGCTAAGA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATCT--T---AA--AAAA-TCTTAACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCNTCTA-------TACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--CGTGT----CTGTGTTTGTGCGTATGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATGTTACTGCAACATTGTANTTTGATGAGAAACTGTGTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTCG-AAAATGTCCCTATTAAAATAGTGNTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAAC
Reference ( family-5013 ) : GGGGCCGTATTCATAAAGCTTCTTAGATT----TTCGCTTAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAAATCTTAGCTAAGA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATCT--T---AA--AAAA-TCTTAACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATACCNTCTA-------TACTATAATCTACTTTAAATGAGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--CGTGT----CTGTGTTTGTGCGTATGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTGTGTTTATGTGTTTAGATATATATGTTACTGCAACATTGTANTTTGATGAGAAACTGTGTATAGTCTTCTTCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGTGAATTACTTCG-AAAATGTCCCTATTAAAATAGTGNTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAAC
gi|1 : GTATTCATAAGAATTCGTA--TTCGTATTCGCTGAGA-AAATATCTTAACACAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTTTTAACTTAAGTGGTATTCATAAGACAACTAGGACAAATCTTAGTTAAGA-A-AACGTATAAGAAAATAATAATA-CTTAGATCAAATAT---TTCATCT--TAAAAA--AAAA-TCATAACTCGGTAACTAAGGAAGTC-TA-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGCTTGGAAAATACCTTCTA-------TACTATAATCTACTTT------------AAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACCTAT-GTGTGTGTAG--CATATCTAGCTGTGTTTGTGTGTATGTATATAT-AAA---CTATGTAC-ATGTTAGTCATTCAACTCGTTTTGTGTTTATGTGTTCAGATATATATGGTACTACAACAGTGTACTTTGATGAGAAACTGTGTATAGTCTTCTTCCTC
gi|1 : CGCAGTGATTTACTTTA-AAAATGTCCCTATTAAAATAGTGTTATGATTATAAATGATAT----TGCCGCTGTTTTCTACCATAATATAAACttcttcttcttttttttctatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagtgatttactttaaaaatgtccctattaaaatagtgttatgattataaatgatattgccgctgttttctaccataatataaaccgatg
gi|10 : gtattcataagaattcgtattcgtattcgctgagaaaatatcttaacacagtaatattttcttagctaagatgaaaacaaatttttaacttaagtggtattcataagacaactaggacaaatcttagttaagaaaacgtataagaaaataataatacttagatcaaatatttcatcttaaaaaaaaatcataactcggtaactaaggaagtctaggatttccaaatcttaaaatagtatcggaagtgatagcttggaaaataccttctatactataatctactttaaatgtcaatgtggtatgtgagcttgtgtgtagtgtgtttgtgtatatatacctatgtgtgtgtagcatatctagctgtgtttgtgtgtatgtatatataaactatgtacatgttagtcattcaactcgttttgtgtttatgtgttcagatatatatggtactacaacagtgtactttgatgagaaactgtgtatagtcttcttcctcttcttcttcttttttttctatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTAGCTAAGACGAAAACAAA--TTATTAACTGAAGTGGTATTCATACAACCAATAAGACAAATCTTAGTTAAGA-A-AAAATATAAGAAAATAATAATT-CTTAGATGAAATG----TTCGTCT--T---AA--AAAA-TCTTAAATACGTAACTAAGGAAGTCGTG-GTGTT-TTCTAACCTAAAAATAGTACCGAAAGTGATAAATTGcgatg
gi|11 : aaaatcctcaacctcaacagccagtgaaacaacTTAGA-CAATACCTTAACTCAATTATA-TTTTA--AGCTAAGATGAAAATAAT--TTCCTAA--TAA-TCACATTCAGTGAACCACAAAAAC--ATCGTAGCTAAAATA-AA
gi|11 : T--T---AA--AAAG-T-TTAACTAGTTAATTATGGATGTC-GG-GGATTGTCCAT-TCTTAAA-TGGTATCGGAAAAGACAGTTTGTAAAATATTGTTTA-------Tttaaaaagtttaactagttaattatggatgtcggggattgtccattcttaaatggtatcggaaaagacagtttgtaaaatattgtttat
gi|12 : ttagacaataccttaactcaattatattttaagctaagatgaaaataatttcctaataatcacattcagtgaaccacaaaaacatcgtagctaaaataaaAAAT-T---TTCG-CT--T---AG--AAAA-T------TCTGTAACTAGGGA-GTC-TG-GGATT-TCCAAATCTTAAAATAATATCGGAAGTGATAGTTTGGGAAATGCCTTCAA-------TACTATTATCTAATATATATGAGTAT
gi|13 : GTGAATTACTTTG-AAAATGTCCCTATTAAAATAGTGATTTGATTATAAATGATGT----TGCCGCTGTTTTCTACCATAATATAAACata
gi|14 : gTGAATTACTTC-----ATGTCCCTATTTAAAAAGTGCTTTGATTATAAATGATAT----TGCCGCTGTTTTATACTATAATGTAAACagctgt
gi|15 : acTAT-GAA---ATATGTCCTAT-TTAGTGACTCAACTTTGTTTGTATTTATGTATTTAGATATAcgttg
gi|16 : AAGTGTCCCTATCAAAACAGTGCTATGATAGTAAATGATATTGTCTGTCACTGTTTTC
gi|17 : AATTACTTTG-ATAGGTTCCCT--TAAAATAGTGATAAGATAATAAATGATAT----TGTCGCTG
gi|2 : GGGGCCGTATTCATAAAGCTTCCTAGATT----TTCGCTAAGA-AAATATCTTAACTCAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGAAAAATCTTAGTTAAAA-A-AACGTATAAGAAAATAATAATT-CTTAGATCAAATAT---TTCATCT--T---AA--AAA------AACTCGGTAACCTAGGAAGTC-TG-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGG-AAATACCTTCTA-------TACTATAATCTACTTTAAATGAGTACTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACCTAT-GTGTGTGTAG--GGTATCTAGCTGTGTTTGTGTGTATGTGTATAT-AAA---CTATGTAC-ATGTTAGTCACTCTACTCGTTT--------TGTGTTTAAATATATATGTTACT---ACAGTGTTTTTTGATGAGAAACTGTCTATAGTCTTCTTCCTC
gi|3 : GGGGCGTATTCATAAAGCTTCTCAAAT-------CGCTTAGA-AATTATCTTAACTCAGTAATA-TTTTCTTAGCTAAATT----ACAAT--TTCTTAATTTAGATTGGATTTATAAAACTACTAAGACAAATCTTAGCTAAAA-ATAATTT-TAAGAAAATAATAATTTCAAAGATCAAATAT---TTCATCT--T---TAGGAAAA-TCTTAACTCGGTTACTAAGGAAGTC-TG-GGATT-TCCAAATCACCAAGTAGTATCGGAAGTGATAGTTTGGAAAATAACATCTA-------TGCTATAATCTACTTTAAATGGGTATTGAAATGTCAATGTGGTATGTGAGCTTGTGTGTAGTGTGTTTGTGTATATATACGTAT-GTGTGTGTAG--TGTGT----CTGTATTTGTGCGTAAGTGTATAT-AAA---ATATGTAC-ATGTTAGTCACTCAACTCGTTTTGTATTTATGTGTTTAAATATATAGGTTACTGCAACATTGTATTTTGATGAGAAACTGTGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagtgaattactttaaaaatatccctatttaaatagtgttttggttataaatgatattgccgctgttttctactataatataaac
gi|4 : tCGTATTCATAAAGCTTCTTAAATA----TTCACTTAAC-AATTATCTTAGCTCAGCAATA-TCTTTTTAGCTAAAATAAAAACAAT--TTCTTAATTTAAGTGGGATTCATAAAACCACTTAGACAACTCTTAGCTAAAG-A-TAAGTTTAAGAAAATGATAATT-CTTAGATCAAATAT---TTTATCT--TTA-AG--AAAA-TCTTAACTCAGTAACTAAGGAAGTC-TGTGGTTT-TTT--ATCTTAAAATAGCAATGGAAGTGATAGTTTGGAAAATACCGTCTA-------TGCTATAATTTACTTTAAATGAGTATTGACATGTCGATGTGGTATGTGAGCTTGTGTGTA----GTTTGTGTATATATACGTAT-ATGTGTGTAG--TTTGT----TTGTATTTG------TGTGTATAT-AAA---ATATGTAC-ATGTAAGTAACTCAACTC-TTTTGTTTTTATGTGTTTAAACATATAGGTTACTGCAACATTATACTTTGACGACAGACTTTGT
gi|5 : GCCGTATTCATAAAGCTTCTTAGATT----TTCGCT------------------CAGTAATA-TTTTCTTAGCTAAGATGAAAACAAA--TTCTTAACTTAAGTGGTATTCATAAAACCACTAAGACAATTCTTAGTTAAGA-A-AACATATAAGAAAATTATAATT-CTTATATCAAATTT---TTCATCT--TT--AA--AAAACTCTTAACTCGGTAACTAAAGGAGTG-TG-GGATT-TCGTAATCTTAAAATAGTATCGGAAGTGATAATTTGGAAAATACTTTCTA-------TACTATAATCTTCTTTAAATGAGTATTGAAATATTATTGTAGTATGTGAGCTTGTGTGTAGTTTGTTTGTGTATATATACGTAT-GTCTGTGTAG--TGTGT----CTGTATTT----GTATGTGTAT
gi|6 : TATATATTAAA---ATATGTAC-ATGTTAGTCATTCAACTCGTTTTGTGTTTATGTGTTTAGATATGCATATTACTGCAACATTTTAGTTTGTTGAGAAACTGTGTATAGTCTTCTT
gi|6 : tgtcCAGTGAATTACTTAATAAAACATCCATACTGAAGTAGTGATATGATTATAgtctttttattcttctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacagtgaattacttaataaaacatccatactgaagtagtgatatgattata
gi|7 : tgtctatatattaaaatatgtacatgttagtcattcaactcgttttgtgtttatgtgtttagatatgcatattactgcaacattttagtttgttgagaaactgtgtatagtcttcttgtctttttattcttctccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaGGCCATTATCACAAAGATTTTTAGATC----TATACATAGCTAAATATCAAAATTCA---ATA-TTTTCTTAGTTAATATGAAAAAAAAAACTCTTAATTTAAGTGGCATTCACTAAACAAATAAGACAGATCTTAGCTAAAA---------TAAGAAAATTATAAGT-CTTA----AAATATAAATTCATCT--TG--AA--AAAA-TCTTCACTTGATAACAAAGGAAGTC-GG-GGATT-TCCAAAACTTAAAATAGTATCTGAGGTAAAAGTTTGGAAAATGCCATATACAAATAGTAATATAA-ATACTTT
gi|8 : G-GGATT-TCCAAATCTTAAAATAGTATCGGAAGTGATAGTTTGGAAAATGCCTTCTA-------TA
gi|8 : ACGTATAGT-TGTATAGTACATGC----GTGCGTGCGTGCGTGCGAG-ATAG-AGATAGATACGTAC-ATGCTAGTT--TGAACTTGTTTTGTGATGATGTGATTAAATATACATGTTACTGCAACATTGTTATTCGATGAG-AATTATATATAtgtgtgtgcctatttgtgtgtgtgtgtgggggggggggggggggggggggttaacgtatagttgtatagtacatgcgtgcgtgcgtgcgtgcgagatagagatagatacgtacatgctagtttgaacttgttttgtgatgatgtgattaaatatacatgttactgcaacattgttattcgatgagaattatatatattttaagacgatagaagt
gi|9 : gggatttccaaatcttaaaatagtatcggaagtgatagtttggaaaatgccttctatatgtgtgtgcctatttgtgtgtgtgtgtgggggggggggggggggggggggttaGGAGCCGTATTCATAAAGCTTCTTAGATT----TTCGCT--AA-AAATATCTTAACTCAGTAATAATTTTCTTAGCTAAGTTGAAAACAAG--TTCTTAACTTAAGTCGTATTCATAAAACCACTAAGACAAATTTTAGTTAAGA-A-AACGTTTAAGGAAATAATAATT-CTTAGATCAAATAT---TTTATCTAAA---AA--AAAA-TCTTAACTCGGTAACTAAGGAAGTC-TG-GGATT-TCCAAATCTTAAAAAAGTATCGCAAGTGATAGTTTAG-AAATACCttttaagacgatagaagt