lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111
lowQualScore : 33 1 1 1 1 4 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11 22222 22 1 222 1 111 2222 11 22222222222222 11 2222222222222222 1111 44444444444444 1 1 11 1 1 44444 333333333333333333 11 66666 4444444444 222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222 3333333333333 111 11 00000000000000000000000 11 1 11 88888888888888888888888 1 11 1 333 555555555555 1 33 333333333 11 44444444444444 1
lowQualScore : 44 5 5 7 5 0 6 5 6 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 33 22222 55 11 9 1 777 6 4 0 99 666 6 1111 3 0 55 4444 3 22222222222222 7 8 0 0 66 3 8 2 5 5 5 2222222222222222 5 3 9999 5 6 6 4 1 22222222222222 5 7 6 4 4 3 2 6 55 99 88 4 7 7 5 55555 111111111111111111 6 66 22222 6 55 1 3333333333 4 6 333333 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 888888 44 0 6 3 6666666666666 111 1 2 33 8 3 11111111111111111111111 1 0 1 88 3 44 7 1 66666666666666666666666 3 88 3 777 7 666666666666 6 3 11 4 888888888 22 7 6 3 88888888888888 0
lowQualScore : .. . . . . . . . . ............................................................................................................................................................................................................................................................................................................................................................................................ . .. ..... .. .. . . ... . . . .. ... . .... . . .. .... . .............. . . . . .. . . . . . . ................ . . .... . . . . . .............. . . . . . . . . .. .. .. . . . . ..... .................. . .. ..... . .. . .......... . . ...... . ..................................................................................................................................................................................... ...... .. . . . ............. ... . . .. . . ....................... . . . .. . .. . . ....................... . .. . ... . ............ . . .. . ......... .. . . . .............. .
lowQualScore : 00 0 0 0 0 0 0 0 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 66 99999 11 00 2 1 666 2 0 8 00 222 0 5555 6 1 99 1111 6 99999999999999 3 8 8 8 66 3 8 2 0 0 0 8888888888888888 0 7 6666 0 7 0 6 8 33333333333333 0 0 6 2 4 9 4 4 22 11 77 0 3 0 0 55555 888888888888888888 0 22 44444 0 88 0 6666666666 0 0 000000 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 888888 55 8 5 0 5555555555555 555 2 5 88 2 2 22222222222222222222222 2 2 2 88 3 33 3 0 77777777777777777777777 3 33 3 000 3 333333333333 0 3 77 7 333333333 00 7 7 7 55555555555555 5
consensus : NNNNTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGANAGGNATNTAACTGACAAAGCTGATGGNAGGANAAGGCACTCACTGANAACAATTGTTGTGAGAAGA--CANNNAACTGGT-TGACACAATTGNNNACANGATAAAGAAC--ACTGACA-AATTGGTNGCAGGACAAGGCACTTATTGAC--AC-AAT--T--GGTGGCA-G-GNCAAGGCACTAACTGACA-AACTGACAAAATTGGTGGCAGGACAAGGCACTNACTGACAA-AA-TTGNTGGCAGGACCAA-AA-----TA---G---GGCA----AAT--ACTAAC-TGACANAATTGGTGGCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAAGGCACTAACTGAC-AAAA-TTGGTGGCAGGACAAGGCA-CTNACTGAC-AAAA-TTGGTNG-CA-------------GG-ACAAGGCACTAACTGACAAAATTGGTGGCAGGACA-AGGCACTNACTGACAA-AA-TTGGTGGCA-------GG-------AC-AAGGCACT-AACTGAC-AAAATTGGTGGC-AGGAAAAGGC-CCTTACTGACAAAA-TTGGTGGCAGGACAAGGCACTNACTGAC-AAAATTGGTGGCAGGACAAGGCACTAACTGACNTTTTCAGCCAGATAATCATTTACTGACGCCGACATAGCGNATTCAATATGTAAATAACTTAT-AAGAAGATTATGTCAACATAATGAATG--TAAATGTCGACCGAATACGTTCCTGTTGTCGACTTAATNAATGGAT------ATGTGGAT--------------TAAG----C---A--TA----TTT-----CACC----ATATAC---A-----ATTATGTA-T-A--N-TTTTA--TAATT---CAT--TA-------TA--C---GTTATTTCTGGAAAACCA-----GA--T-GTA----T--TAACGTGTG---------ATACTGTTAC-C--TTTTGAGCGGTTAACAATGCATTTTGAT--AATAGTATCGACTGTTATCCGCTG--GAGATTAC-----ACATTAGT----------ATTTTGCGTGAGATATAATAATAAC-TATTATTTAAT-ACTTGCTAGAAA-CTTTAA-----AATAT--GA-ACTTGTAAA--ACAC-AT-TCTAATACCACATACATA--N--GGTCTATAA-AAA--ATATNATA-TACNCNNCTTGTNAANTTGCTNACCT-GCAAAAACAA-CAAGCGANTACAAT
Reference ( gi|1 ) : CTTGTTATCTATAATATGTAGACTTAATTCAACT-GGGAATTGAACATTTTTAAAAG---TATA----TATAATACAA-----CTAACTG--ATAATAGATTTGACAGGATAGAGTGACTAAA----ACAAGTA---GC--GAAAGGCA-CTAACTGACAAAAGTAATTGCCGGAAATGATACTAACTGATAA-AATTG--G---GAAGGACCAAAAAAGTAGTATGGCA-----GGTCA-ATG--------C--ACTGACA-AGTTGGTAGTAGGACAATGCACATATTAAC--AC-AAA--T--GGTGGCA-G-ACCAATGCACTAACTGACAAAACTGACGAAATTGGTGGTAGGACAATGCACTGACTGATAA-AA-TTTGTGGCAGGACCAAAAACG---TA---GTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGTAGGCCAGTGCACTAGCTGACAAACCTGTTGGCAGTACAAGTCTCTAGCTGAC-ACAA-CTGGTTAAAAGACAAGGCA-TAAACTGAC-AAAT-TTGGTTG-CA-------------AG-ACAATGCACTAACTGACAAAATTTATGGCAGGACA-AGCCACTTACTGACAA-AA-TTGATGGCA-------GG-------AC-AGAGCAAC-AACTGAC-ACAATCGGCGAC-TGGAAAAGAT-CTTTATTGACAAAA-TAGGTGGCAGGACAAGGCATTTACTGAC-AAACTTGGCGGCAGAGCAATGCACTAACTGACTTTTTCAGCCAGATAATCATTTTCTGATGTCGCCAT----TATTCA---T-TCGATA---TAT-AAGAAGGTTATGTCATCATAATGAATAATTCAATATCGACCAAATACGTTCCTGTTTTCCATTTCATTAATGAAT------ATGTGGGT--------------T--------------TG----TTG-----TACT----ATATAT---A-----ATTATGTA-T-A--T-TTTTA--TAATT---TAT--TA-------TA--C---ATTAAC----GAGAACCA-----GA--T-GT-----T--TAA---------------ATACTGTTAC-C--TTTTGAGCGGTTAACAATGCATTTTGATTAAATAATAGCGACTATTATCCGCTG--GGGATTAC-----AC---CGT----------ATTTTGCGTGAGATAAGATAATAAC-TATTATTTAATAACTTGTTAGAAAACTATAAAT-TCAATAT-GGA-ACTTGTAAA--ACAC-ATTGTTAATACCACTTACATAGAA--GGCCTATAA-AAA--ATATAATA-GACACTGTTTGTTAATTTGCTGACCTGAAAAAAACAAACAAGCGAGTACAATG
gi|10 : TTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAA-AATTGTTG---G------CATTCAATTGG--TGACA-----GTACA-AGG--------C--ACTAAC-----TGATA-------AA-------ATTAAT--------------GTG--A-G-TTCAATGCACTAACTAACGTAACT
gi|7 : AAGGCA-ATAACTGACAAAATTGATGGAAAGACAAGGCATTTACTGAAAACAATTG--GTGAGAAGA--CAAAGAACTAAT-TGACACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACA--GGAC--CTTAACTGACTAAAATT--GGTGAGA-G-GTCAAAG----AACTG-----ATTGACAAAATTGGTGGTAGGACAAGGCATTTACTGAAAACAA-TTGATGAGAGGACAAAGAAC----TA---AT-----------------TGA-----CACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACAAAAA-TTGGTGAGAGGTCAAAG
gi|10 : cgtccatgaaattttaccgctgaaaatttagttcaatagttgacaaatttggtggcacgacaaggcactaaccaactcactgggtgtcaaggc--ACTGGCATAATTAGTTACAGAACAAGGCACTAAATAAC--AC-AAT--T--AATTGCA-G-GACAGGGATCTAACTGACAAAGCTGA---------TAGCAGAAAAAGGCACTCACTGACAA-AA-TTGTTGGCAT--TCAA----T---TG---G--TGACAGTACAAGGCACTAAC-TGATAAAATTAATGTGAGTTCAATGCACTAACTAACaa
gi|19 : ttatcattaatatttatacatacttcaactaggggattgaaccttttcaaaaacaatatacatgtatgatataaataagttaA-AATTGGTGGCAGGACAAGGCAAATATTAAC--AC-AAT--T--GGTGGCA-G-G-AAAGGCCCTCACTGAC-----------AATTGGTGACAGAACAAgtaact
gi|23 : agtagaactaaatgacaaaattggcgacagcactagacactttctgccaaA-AATTGTT-GAAGGAAAATGCACTTACTGAC--AA-AAT--T--GTTGACATG-ACAAA-GCACTAATTGACgt
gi|3 : aTATGGAC--AA-AAT--T--GGTGGCA-G-GACAAGGCACTAGCTGATAtttttcaacca
gi|19 : agaacacggccgtTGAC--AA-AAT--T--GGCGACA-GCACTAG-ACACTTTCTGCCAAAA--------ATTGGTGGCAGGACAAGGCAAATATTAACAC-AA-TTGGTGGCAGGAtgtttagccagataatcatttactgatgccgacatgatgaatactgaaatgtcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|7 : agtagaactaaa--AC-AAA--TTTGGTGGCACG-AC-AAGGCACTAACC-----AACTCAC----TGGGTGTCAAGGCAAGGCAATAACTGACAA-AA-TTGATGGAAAGAC----AA--------------GGCA------TTTACTGAAA----ACAATTGGTGAGAAGACAAAGAACTAATTGACACAATTGGTGACATGATAAAGAACTGACTGAC-AGAA-TTGGTTACAGGACAGGACC-TTAACTGACTAAAA-TTGGTGA-GA-------------GG-TCAAAGAACTGATTGACAAAATTGGTGGTAGGACA-AGGCATTTACTGAAAACAA-TTGATGAGA-------GG-------AC-AAAG-AACTAATTGAC-ACAATTGGTGACATGATAAAGAA-C-TGACTGACAGAA-TTGGTTACAGGACAGGACCTTAACTGACAAAAATTGGTG--AGAGaaggccctcactgacaattggtgacagaacaagt
gi|23 : cgtccatgaaattttaccgctgaaaatttagttcaatagttg-AAA--T--TGTTGAA-G-GAAAATGCACTTACTGACA---------AAATTGTTGACATGACAAAGCACTAATTGAgtcaaagaa
gi|19 : aACTAAA-TGACAAAATTGGCGACAGCACTAGACACTTTCTGCCAA-AAATTGGTGGCAGGA-CAA-----------------GGCA----AATA---TTA----ACACAATTGGTGGCAGGAAAG-GCCCTCACTGACAA--TTGGTGACAGAACAAGTctttttcaacca
gi|10 : agtagaAACTGGCATAATTAGTTACAGAACAAGGCACTAAATAACAC-AA-TTAATTGCAGGAC-----------------------AGG--GAT---CTAAC-TGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAAAATTGTTGGCATT-------------------CAA-TTGGTGACAGTACAAGGCA-CTAACTGAT-AAAA-TTAA-TG-TG-------------AGTTCAATGCACTAACTAAC
gi|3 : ttatcattaatatttatacatacttcaactaggggattgaaccttttcaaaaacaatatacatgtatgatataaataagttGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATAgtaact
gi|23 : agaacacggccgttatgAAATTGTTGA-AGGAAAATGCACTTACTGACAA-AA-TTGTTGACATGACAAAtgtttagccagataatcatttactgatgccgacatgatgaatactgaaatgtcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|10 : aCAAAAACAATATACATGTATGATA--TAAATAAGTTAAC-TGGCATAATTAGTTACAGAACAAGGCACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGAC-AAAG-CTGATAGCAGAAAAAGGCA-CTCACTGAC-AAAA-TTGTTGG-CATTCAATTGGTGACAGTACAAGGCACTAACTGATAAAATTAATGTGAGTTCA-ATGCACTAACTAACgcactaattgactttttcaacca
gi|3 : ttatcattaatatttatacatacttcaactaggggattgaaccttttGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATAgtaact
gi|23 : agaacacggccgttatgAATTGTTGA-AGGAAAATGCACTTACTGACAAAATTGTTGACATGACAAAGCACTAATTGAC-tgtttagccagataatcatttactgatgccgacatgatgaatactgaaatgtcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|19 : aaACTAAATGACAAAATTGGCGACAGCACTAGACACTTTCTGCC-AAAAATTGGTGGCAGGACAAGGCA-AATATTAAC-ACAA-TTGGTGG-CA-------------GG-A-AAGGCCCTCACTGAC--AATTGGTGACAGAACA-AGtttttcaacca
gi|3 : agtagaGACAAAATTGGTGGCAGGACAAGGCACTAGCTGAT-At
gi|10 : agaacacggccgttatgATAAGT---TAACTGGC-ATAA-TTAGTTACAGAACAAGGCACTAAA-TAAC-ACAA-TTAATTG-CA-------------GG-ACAGGGATCTAACTGACAAAGCTGATAGCAGAAAA-AGGCACTCACTGACAA-AA-TTGTTGGCATTCAATTGGTGACAGTAC-AAGGCACT-AACTGAT-AAAATtgtttagccagataatcatttactgatgccgacatgatgaatactgaaatgtcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|19 : ttatcattaatatttatacatacttcaactaggggattgaaccttttcaaaaacaatatacatgtatgatataaCTAAATGAC-AAAA-TTGGCGACAGCACTAGACA-CTTTCTGCC-AAAAATTGGTGG-CA-------------GG-ACAAGGCAAATATTAACACAATTGGTGGCAGGAAA-GGCC-CTCACTGAC---AA-TTGGTGACA-------GA-------AC-Ataatgtgagttcaatgcactaactaacgtaact
gi|3 : agtagaaGAC-AAAA-TTGGTGGCAGGACAAGGCA-CTAGCTGAT-ATGT-TTA---G-CC-------------AG-ATAAT-CATTTACTGAagt
gi|23 : agaacacggccgttatgGTTGAAGGAAAATGCA-CTTACTGAC-AAAA-TT-GTTGACA-------------TG-ACAAAGCACTAATTGACtgccgacatgatgaatactgaaatgtcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|10 : aaaattAACTGGC-ATAA-TTAGTTA-CA-------------GA-ACAAGGCACTAAATAACACAATTAATTGCAGGACA-GGGATCTAACTGACAA-AG-CTGATAGCA-------GA-------AA-AAGGCACT-CACTGAC-AAAATTG----T-TGG-----------CATT--CAA---TTGGTGACAGTACAAGGCACTAACTGAT-AAAATTAATGTGAGTTCAATGCACTAACTAACtttttcaacca
gi|3 : ttatcattaatatttatacatacttcaactaggggattgaaccttttcaaaaacaatatacatgtatgatataaataagttGAC-AAAA-TTGGTGG-CA-------------GG-ACAAGGCACTAGCTGATATG-TTTA--GCCAGATA-A-TCATTTACTGAgtaact
gi|23 : agaacacggccgttatg-AAAT-T--GTTG-AA-------------GG-AAAATGCACTTACTGACAAAATTGTTGACATGACA-AAGCACTAATTGACtgccgacatgatgaatactgaaatgtcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|19 : aACTAAATGACAAAATTGGCGACAGCACT-AGACACTTTCTGCCAA-AAATTGGTGGCA-------GG-------AC-AAGGCAAA-TATTAAC-ACAATTGGTGGC-AGG-AAAGGC-CCTCACTGAC--AA-TTGGTGACAGAACAAGtttttcaacca
gi|23 : agtagaAAAATT-GTTGAAGGAAA-ATGCACTTACTGACAA-AA-TTGTTGACA-------TG-------AC-AAAGCACT-AATTGAC-t
gi|12 : TGGCAGGACA-AGTCACTTATTtttttcaacca
gi|3 : ttggAGAACACGGCCG-TTATGGACAA-AA-TTGGTGGCA-------GG-------AC-AAGGCACT-AGCTGAT-Attttcagccagataatcatttactgacgtcgacatagcgtattcaatatgtaaataacttatgaagaagagtacgtcaatataatgcatgcaatgtcgaccgaatacattcctgttgtcaacataatgaatggatatgcagatgtaggctgacagaactatttcatcatatacaacatgtataaattttaaattcattatgcactaaatatgttatttctg
gi|19 : ACTAAATGACAA-AA-TTGGCGACA-------GC-------ACTAGA-CACT-TTCTGCCAAAAATTGGTGGC-AGGACAAGGC-AAATATTAACACAA-TTGGTGGCAGGA-AAGGCCCTCACTGAC-AA--TTGGTGACAGAACAAtgtttagccagataatcatttactgatgccgacatgatgaatactgaaatgtcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|19 : agtagaAACTAAATGAC-AAAATTGGCGAC-AGCACTAGACACTTT-CTGCCAAAAATTGGTGGCAGGACAAGGCAAATATTAAC-ACAATTGGTGGCAG-GAAAGGCCCTCACTGACgt
gi|23 : agtagGGAAAATGC-ACTTACTGACAAAA-TTGTTGACATGACAAAGCACTAATTGAC-aattggtgacagaacaagt
gi|3 : aaaattgttgaaTTATGGACAAAA-TTGGTGGCAGGACAAGGCACTAGCTGAT-ATGTTTAGC--CAGA-TAAT-CATTTACTGAtttttcaacca
gi|23 : agaacacggccgAAAA-TTGTTGA-AGGAAAATGCACTTACTGAC-AAAATTGTTGACATGACAAAGCACTAATTGACTTTTTCAACCAtgccgacatgatgaatactgaaatgtcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|12 : GGTGGCAGGACAAGTCACTTATT
gi|3 : ttAGAACACGGCCGTTATGGAC-AAAATTGGTGGCAGGACAAGGCACTAGCTGATATGTTTAGCCAGATAATCATTTACTGATGCCGACAT----GATttttcagccagataatcatttactgacgtcgacatagcgtattcaatatgtaaataacttatgaagaagagtacgtcaatataatgcatgcaatgtcgaccgaatacattcctgttgtcaacataatgaatggatatgcagatgtaggctgacagaactatttcatcatatacaacatgtataaattttaaattcattatgcactaaatatgttatttctg
gi|19 : TGAC-AAAATTGGCGACA-------GCACTA---GACACTTTCTGCCAAA-AATgaatactgaaatgtcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|12 : agtagaactaaaTTGGTGGCAGGACAAGTCACT---T-ATTTTTTCAGCCAGATAATCATTTACTGACGTCGACATAGCGTATTCAATATGTAAATAACTTATGAAGAAGAGTACGTCAATATAATGCATG---CAATGTCGACCGAATACATTCCTGTTGTCAACATAATGAATGGATATGCAGATGTAGGC--------------TGACAGAAC------TA----TTT-----CATC----ATATAC---A-----A-CATGTA-TAA--A-TTTTA---AATT---CAT--TA-------TG--C---ACTAAtggtggcaggacaaggcaaatattaacacaattggtggcaggaaaggccctcactgacaattggtgacagaacaagt
gi|2 : TA---TA--AAGAAGATTATGTCACAATAATGAAT---TAAGTGTCGACTAAAT--GTTCGTGTTGCCGACTTAATTAATGGAT------ATGTGGAT--------------T--------------TAGACTTTCAAAACTACTTAACATATAC---A-----ATT------T-A--A-TTTCA--TTATA---CAC--TA-------TA--C---GTTATTTTTGGAAAACCATGTGTGA--TAGC-----T--TAA---------------AAACTGTCACAT--TTTTGAGTGGTTA-----GCATTTTGATTAACTAGTATTGACTATTATCCGCTG--GAGA-TAC-----ACATTAGT----------ATTAAGCGTGAGATATAATAACAACTTATTATCTTATAACTTGCTAGAAAACTTTAAATATCA------GA-ACTTGTAAA--ACAC-ATATCTAATATCACATACATAGCT--GGTCTAGAG-AAAC-ATATGATA-TACTCTCCTTG-TAAATTGCTTACCT------CACAATCAAGCAAATACAATatatgttatttctg
gi|4 : tcgatgtgtatattagtgactt-AGGAAGATTATGTCAACATAATGAAT---TGAATGACGACCAAACA-------------------ATTAATGGAT------TTGTTGGT--------------TAAGGCTGGCAGAACTA----TTT-----CGCC----ATATAC---A-----CTTATGTA-T-A--CATTGTA---AATT---TATATTA-------TA--CGATATTTCT----GGAAACCA-----GA--T-ATATTTAT--CAACGTGTGACAATTCATATACTGTTAC-A--TATTGAGCGGTTAACAATGCATTTTGATGCAAAAGTATGGACTTTTAACCGCTG--GTGATTACTTGTAA-----GT----------ATTTTGCATGAGGTATACTAGTAAC-TTTTATTTAATCACTTGCTAGAAATCTTTAA-----AATAT-CGAGACTTGTAAA--TCCCTAT--CTAATACAACATA-ATATAACTGGTCTATGA-AAAACATATAATA-TA-ACCTTTTGTCAATTT-CTAACC--GCAAAAACAAAttttaaaataaaatgaaataaaaacctcatactaatttctgtcaagttgatgactaaaatgactaggagttatctcatgcttgaaaatgctatttggattttgaaggttgttgtaactctgccctccatgtgatacgagtaataccctcatgtcctaaagcggcatctactctcaagcaacactggatgtattccatgattccaataataacactggaaatacaaaattccaacggccatatgtctgacaacaaacaatcagaacatatgtattaaattctgttatttccagactggg
gi|8 : GAAGATGATGTCAATGCAATGAAAGA---AATGTTGACCGAATACGATCCTGTTGTCGACTTTATAAACAGAT------GTGTAGAT--------------TAGGCTGCCATAAC-TA----TTT-----TACT----ATACATTTGATATTTATTATGCACT-A--T-TTTTA--CACTT---TAT--T--------T--------CTG------GGAAACCA-----GATTT-AT-----TTATAA---------------ATA-TGTGAC-tgatcactattttaaaaaataaaataaaagcaaacccaatacttatttaagttaaatccaaacgaaacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataa
gi|3 : ATGCCGACATGATGAATACTGAAATGTCGATCGAATACGTTCCTGTATTG-ACTTAATCAATGGGT------ATGTGGATATAAACCGTCAAAAC--------------TA----TTT-----CACA----ATATAC---A-----ATTATGTA-T-ACAT-TTTGAATTAATTATACAC--TA-------TATCC---GTTATTTCTGGAAAATCA-----GA-----T-----T--T-----------------AT----TTAT-C-------AGCGTGTGACAGT------TGA---AATACT-GTTAC-GTTTTACGCTGTTGACATTGC-----AT---TTTGATGAAATTCATTTTGCGTAAGAGATTATAATAAC-TATTATTTAA--AC--GTTA----------------AATATCGGA-ACTTGTAAAACACAC-ATCTTT--TACCACAAAC-----G--GGTCTATAACAGC--ATATTATATAACCCAACTTGTACAGTTGCTGATATAACAAAAA-----AAGCGATTACAATagattagatatttcccaaatgttgtgctacacttgtccattctgttatttccagactggttacatgtcgtttgatgccaagtacttttttaaacgaaataacttattatatagaaaaatgtaactactgta
gi|9 : agaacacggccgttatggacaaaattggtggcaggacaaggcactagctgatatgtttagccagataatcatttactg----ATTTAC---A-----AATATGTA-T-AC-T-TTTTA---AATC---TAT--TAATGATTCTA--T---ATTATTTCTGGATAGTCA-----AA--T-GTA----T--CAACGTGTG---------GTA--GTTAC-CTATTTTGAACGGTTTACAATACATGTTCAT--AAT--TACCCGCTG--GTCCA-TA--GAGATTAA-----ACATTAGT----------GTACTGCCTGAATTAAAATAAtgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
13 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): CGCCTCTTGTAAATTGATAACCAGACAAATCAAGCGATTAAAATTAAAAAATGATCATTAAAAGCGACCCTAATACTCATTTCAGTTAAATTGATGACAAGCAGTCTAGGACTTGTACTCGTGCTTGAAAATATTATATTGATTTAGAAGATAGAAGTCACTCTATAGCATTTCATATGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAAGAAATAATAATAACACTGGAGAGGCAAAATTTTAACTGTCTTAAATCTGACAACGGACAATCAAAACATATGTATCACTGGACTCGACGGAACGGTTGTGTAACACTTGACGATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTCGAACCAACTAGACAAAATAATTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|6 ): AGAACCGCCTCTTGTAAATTGATAACCTGACAAACCAAGCGGTTAAAATTCAAAAATAATAAATAAAAGCGACCCTTATACTCCTTTCAGTTAAATTGATGGCAAGCAGTCTAGGACTTGTCCTCGTTCTTGAAAATATTATTTGGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGAAAGCAGAGCTAATTATTACACTGGAGAGGCAAAATTCTAACTGTGTCAAATCTGACAACGGACAATCAAAACATATGTATCACTTGACGATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACACGTAACTTTGAACCAACTAGACAAGATAACTTATTGCAAAGACAAAATGTA
Unaligned ( gi|11 ): GTAAATTTGATAACCTGACAAATAATGCAATTAAAATTCAAAAATAATAAATAAAAGCGACCTTACTACTCATTTCAGTTCAGTTGATGACAATCAGTTTAGGACTTGTCCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTAGAGTAATTCATATCAAACGTGCAACACTCCTCATATCACTTTGAACCGACTAGATTGCAAAGCAAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|13 ): ATAATAACACTGGAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAGTGGTTGTGTAACACTTTACGATTCTGTTATTCCCAAACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGTAAC
Unaligned ( gi|14 ): TACACTGGAGAGGTAAAATTCTAACTGTCTTTAATCTGACAACGGACAATCAAAACATAATATGTATCTTTTTTTTTCGACAGAACGGTTGTGTAACACTGGACAATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTACACAAGTTAACTTATTGTAAAGACAAAATGTAACT
Unaligned ( gi|15 ): ACTGGATAGGCAAAAGTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACAATTCTGTTATTCCCAGAATGGTTAACATCCAATTTGATGGCATGTGACTTTGAACCGACTAGAAAGATTAACTTATTGAAAAGACAAAATGTAA
Unaligned ( gi|16 ): CTGGAGAGGCAAAATTCTAACTATCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACGATTATGTTATTCCTAGACTGGTTACATCCCATATGATGACATGTAACTTTGAACTGACTAGACAAGTTAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|17 ): AAGATGATAATAATTAAAATACAATTTTACAAATAAAAGATACTTTTTGCAGTTAAATTTATGTCTAAAATTACTAGGATTTTTCTTATTGCTTTGAAGATATTATTTGGATTTTGAAGATTGTTGTAACTCTG
Unaligned ( gi|18 ): AATTGCTGACCTCACAATAAAATCGATTACAGTTTAAGATAATCATAATAAATAAACAGATAATTGTTTCGGTTAAATTGATGATAAACATTACTTTTAGTTGTCCAAGTGCTTGAAAAATATTTGTTTGA
Unaligned ( gi|20 ): GTGGGCGGGCGGGCGGACAGGCAGGCAGGCAGATGCATAATAACTTGTACATTCTGTTATTTCCTGACTAGTTACATGGTATTTGAGGACATATATAATGTGTGTTCCAACTAGACAAGATAACGTAGCGC
Unaligned ( gi|21 ): GTAACACTTGCAATAGAAAATTCATCCATTTTGTTATTTCCAGACTGGCCGCATGCCATTTGAGGACACACTTTGTATCAGCTGGACAAGATAACTTATTACACTGAAGATTGTAAC
Unaligned ( gi|22 ): CAGAGCAGGCGTTATGGACAAAATGGCGGCAACATAGACATGTATATTTAATAACATCAGCCGATACAGAGATAATAAACGCTGAA
Unaligned ( gi|24 ): CGGGCGGGCGGGCGGGCAGGCAGGCAGGCACTACTCACATTATTAAATTGCACATCTTGATA
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222222 111111111111111111111111 1111111111111111111111111
lowQualScore : 1 222 2222 22222 11 22 2 2222 222 11 11 1 4 9999999999999999999999999999999999999999999999999999999 1 1 666666666 1 1 2 666666666666666666666666 2 1 111 2 222 1 1 111 1 11 11 33333333333333333 1 4444444 4444444444444444444444444 111 222222222 11111111 222222222222222222222 7777777777777777777777777777777 2222 22222222 11111 1 3333 2 1 222222 44 2 222222 1 22 1 1 333333333333333
lowQualScore : 88 3 3 4 2 5 2 111 3333 77777 77 4 77 0 4444 3 111 88 1 1 66 2 0 44 1 4 2 1 0 6666666666666666666666666666666666666666666666666666666 3 3 1 3 6 8 1 6 4 4 2 1 2 2 222222222 0 2 1 0 0 33 2 2 999999999999999999999999 0 1 2 3 0 2 3 2 2 2 666 0 3 333 4 2 55 4 1 2 3 0 0 3 1 3 0 666 2 0 7 0 0 4 33 00 3 1 0 2 44 0 0 666 1 1 88888888888888888 0 8 0000000 2 44 1 5 1 5 77 2222222222222222222222222 1 3 1 5 1 5 222 5 777777777 00000000 777777777777777777777 1 1 1 0000000000000000000000000000000 2222 0 1 8 33333333 0 5 55 3 0 88888 666 3 5 0 0 8 3333 0 0 0 777777 77 8 1 4 8 8 44 999999 0 33 1 0 1 22 6 1 1 111111111111111 1
lowQualScore : .. . . . . . . ... .... ..... .. . .. . .... . ... .. . . .. . . .. . . . . . ....................................................... . . . . . . . . . . . . . . ......... . . . . . .. . . ........................ . . . . . . . . . . ... . . ... . . .. . . . . . . . . . . ... . . . . . . .. .. . . . . .. . . ... . . ................. . . ....... . .. . . . . .. ......................... . . . . . . ... . ......... ........ ..................... . . . ............................... .... . . . ........ . . .. . . ..... ... . . . . . .... . . . ...... .. . . . . . .. ...... . .. . . . .. . . . ............... .
lowQualScore : 00 0 0 0 5 5 5 000 5555 00000 55 0 55 0 0000 0 555 00 0 0 55 5 5 00 0 0 5 0 0 5555555555555555555555555555555555555555555555555555555 3 3 0 7 7 3 0 0 7 7 5 0 5 5 555555555 5 5 0 5 0 55 5 5 000000000000000000000000 0 0 5 0 5 5 0 5 5 5 555 0 0 555 0 5 00 0 0 5 3 7 7 7 0 3 7 000 0 7 3 7 7 7 22 88 7 0 2 5 88 7 7 000 0 0 77777777777777777 0 0 2222222 5 22 0 3 0 7 99 6666666666666666666666666 7 0 7 0 4 7 444 7 777777777 33333333 999999999999999999999 7 0 7 2222222222222222222222222222222 2222 8 0 0 22222222 8 0 44 2 8 88888 000 2 0 8 6 0 8888 2 0 0 888888 55 0 4 0 0 0 00 888888 0 88 0 0 0 00 6 0 0 222222222222222 0
consensus : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAA-AATTGTT--GGAAGGGCCANNNAANTGGTATGGCA-----GGNCACANG-----GCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAACGACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTCGATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGG--AT-TAAG-CT--C-------ANAAC--TATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC-N--TTTTGAGCGGTTAACAATGCATTTTGA-T--AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAATAAC-TATTATTTAATAACTTGCTAGAAAA-CTTTAA----AATATCGGA-ACTTGTAAAACACATAT-CTAATACCACAT-ACAT--A-CNGGTCTATAA-AAA--ATATAATAT-ACNCCNCTTGT-AANTTGCTGACCT-G-CAAAAAC-AA-CAAGCGANTACAAT
Reference ( family-501 ) : NNNNTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGANAGGNATNTAACTGACAAAGCTGATGGNAGGANAAGGCACTCACTGANAACAATTGTTGTGAGAAGAC-ANNNAACTGGT-TGACACAATTGNNNACANGATAAAGAAC--ACTGAC-AAATT-GGTNGCAGGACAAGGCACTTATTGACACAATTGGTGGCAGGNCAAGGCACTAACTGACAAA-CTGACAAAATTGGTGGCAGGACAAGGCACTNACTGACAA-AATTGNTGGCAGGACCAAAA---TAG---GGCA----AATAC--TAAC-TGACANAATTGGTGGCAGGACAAGGCACTAACTGACAAAATTGGTGACAGGACAAGGCACTAACTGAC-AAAATTGGTGGCAGGACAAGGCACTNACTGACAAAATTGGTNGCAGGACAAGGCACTAACTGACAA-AATTGGTGGCAGGACAAGGCACTNACTGACAAAA-TTGGTGGCAGGACAAGGCACTAACTGACAAAATTGGTGGCAGGAAAAGGCCCTTACTGAC-AAAATTGGTGGCAGGACAAGGCACTNACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACNTTTTCAGCCAGATAATCATTTACTGACGCCGACATAGCGNATTCAATATGTA----AATAACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTAATNAATGGA-TATGTGG--AT-TAAG-----C-------A------TATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATT----AACGTGTG---------A---------TACTGTTAC-C--TTTTGAGCGGTTAACAATGCATTTTGA-T--AA-TAGTATCGACTGTTATCCGCTGGAGATTACACATTAGTATTTTGCGTGAGATATAATAATAAC-TATTATTTAAT-ACTTGCTAG-AAA-CTTTAA----AATAT--GA-ACTTGTAAAACACAT-T-CTAATACCACAT-ACAT--A--NGGTCTATAA-AAA--ATATNATAT-ACNCNNCTTGTNAANTTGCTNACCT-G-CAAAAAC-AA-CAAGCGANTACAAT
gi|1 : TTATCTATAATATGTAGACTTAATTCAACT-GGGAATTGAACATTTTTAAAAG---TATA----TATAATACAA-----CTAACTG--ATAATAGATTTGACAGGATAGAGTGACTAAA----ACAAGTA---GC--GAAAGGCA-CTAACTGACAAAAGTAATTGCCGGAAATGATACTAACTGATAA-AATTG----GGAAGGACCAAAAAAGTAGTATGGCA-----GGTCA-ATG--------C--ACTGAC-AAGTT-GGTAGTAGGACAATGCACATATTAACACAAATGGTGGCAGACCAATGCACTAACTGACAAAACTGACGAAATTGGTGGTAGGACAATGCACTGACTGATAA-AATTTGTGGCAGGACCAAAAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGTAGGCCAGTGCACTAGCTGACAAACCTGTTGGCAGTACAAGTCTCTAGCTGAC-ACAACTGGTTAAAAGACAAGGCATAAACTGACAAATTTGGTTGCAAGACAATGCACTAACTGACAA-AATTTATGGCAGGACAAGCCACTTACTGACAAAA-TTGATGGCAGGACAGAGCAACAACTGACACAATCGGCGACTGGAAAAGATCTTTATTGAC-AAAATAGGTGGCAGGACAAGGCATTTACTGACAAACTTGGCGGCAGAGCAATGCACTAACTGACTTTTTCAGCCAGATAATCATTTTCTGATGTCGCCATTATTCATTCGATA---------------T-AT-AA-GAAGGTTATGTCATCATAATGAATAATT--CAATATCGACCAAATACGTTCCTGTTTTCCATTTCATTAATGAA-TATGTGG--GT-T-----------------------TGTTGTACTATATATAATTATGTAT-A-T-TT-TTA---TA----ATT---TAT--TA-------TA--C---------ATTAAC----GAGAACCAGATGT-TT----AA---------------A---------TACTGTTAC-C--TTTTGAGCGGTTAACAATGCATTTTGA-TTAAA-TAATAGCGACTATTATCCGCTGGGGATTACAC---CGTATTTTGCGTGAGATAAGATAATAAC-TATTATTTAATAACTTGTTAGAAAA-CTATAAATTCAATATG-GA-ACTTGTAAAACACAT-TGTTAATACCACTT-ACATAGA--AGGCCTATAA-AAA--ATATAATAG-ACACTGTTTGTTAATTTGCTGACCT-GAAAAAAACAAA-CAAGCGAGTACAAT
gi|10 : cttgTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAA-AATTGTT-------GGC-ATTCAATTGG--TGACA-------GTACAAG-----GCACTAACTGATAAAATT-AATGTGAGTTCAATGCACTAACTAACGTAACTg
gi|12 : TTGGTGGCAGGACAAGTCACTTATT----TTTTCAGCCAGATAATCATTTACTGACGTCGACATAGCGTATTCAATATGTA----AATAACTT-ATGAA-GAAGAGTACGTCAATATAATGCATG--C---AATGTCGACCGAATACATTCCTGTTGTCAACATAATGAATGGA-TATGCAG--ATGTAGG-----CTG-----ACAGAACTATTTCATCATATACAA-CATGTATAA-A-TT-TTA----A----ATT---CAT--TA-------TG--CACTAAATATGTTATTTCTG
gi|19 : ACTAAATGACAA-AATTGGCGACAGCACTAGACACTTTCTGCCAAAAATTGGTGGCAGGACAAGGCAAATATTAACACAATTGGTGGCAGG-AAAGGCCCTCACTGAC---AATTGGTGACAGAACAAG
gi|2 : agtagaTCGATGTGTATATTAGTGACTTTAT-AAAGAAGATTATGTCACAATAATGAAT---T--AAGTGTCGACTAAAT--GTTCGTGTTGCCGACTTAATTAATGGA-TATGTGG--AT-TTAGACTTTC-------AAAAC--TACTT-AACATATACAATT-----T-A-A-TT-TCA---TT----ATA---CAC--TA-------TA--C---------GTTATTTTTGGAAAACCATGTGTGAT----AGCTTA-A---------A---------AACTGTCACAT--TTTTGAGTGGTTA-----GCATTTTGATT--AACTAGTATTGACTATTATCCGCTGGAGA-TACACATTAGTATTAAGCGTGAGATATAATAACAACTTATTATCTTATAACTTGCTAGAAAA-CTTT-A----AATATCAGA-ACTTGTAAAACACATAT-CTAATATCACAT-ACAT--AGCTGGTCTAGAG-AAAC-ATATGATAT-ACTCTCCTTGT-AAATTGCTTACCT---C----AC-AATCAAGCAAATACAATt
gi|23 : -AAAATTGTTGA-AGGAAAATGCACTTACTGACAAAATTGTTGACATGACAAAGCACTAATTGACTTTTTCAACCAttttaaaataaaatgaaataaaaacctcatactaatttctgtcaagttgatgactaaaatgactaggagttatctcatgcttgaaaatgctatttggattttgaaggttgttgtaactctgccctccatgtgatacgagtaataccctcatgtcctaaagcggcatctactctcaagcaacactggatgtattccatgattccaataataacactggaaatacaaaattccaacggccatatgtctgacaacaaacaatcagaacatatgtattaaattctgttatttccagactggg
gi|3 : AGAACACGGCCGTTATGGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATATGTTTAGCCAGATAATCATTTACTGATGCCGACATGATGAAT
gi|3 : ATGCCGACATGATGAATA--CTGAAATGTCGATCGAATACGTTCCTGT-ATTGACTTAATCAATGGG-TATGTGG--ATATAAA-----CCGTCAAAAC-----TATTTCACAATATACAATTATGTAT-ACA-TT-TTGAATTA----ATTATACAC--TA-------TATCC---------GTTATTTCTGGAAAATCAGATTTATTTATCAGCGTGTGACAGTTGAAA---------TACTGTTAC-G--TTTTACGCTGTTGACATTGCATTTTGA-T--GA--AAT-TC----ATTTTGCGTAAGAGATTATA---------------------ATAA------C-TATTATTT--------------AAA-CGTT-A----AATATCGGA-ACTTGTAAAACACACAT-CTTTTACCACAA-AC-------GGGTCTATAACAGC--ATATTATATAACCCAACTTGTACAGTTGCTGATATAA-CAAAAA------AAGCGATTACAATactgaaatgtcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|4 : agaacacggccgttatggacaaaattggtggcaggacaaggcactagctgatatgtttagccagataatcatttactg-AG-GAAGATTATGTCAACATAATGAAT---T--GAATGACGACCAAACA-------------------ATTAATGGA-TTTGTTG--GT-TAAGGCTGGC-------AGAAC--TATTTCGCCATATACACTTATGTAT-A-CATT-GTA----A----ATT---TATATTA-------TA--C---------GATATTTCTGGAAA-CCAGATATATTTATCAACGTGTG---------ACAATTCATATACTGTTAC-A--TATTGAGCGGTTAACAATGCATTTTGA-TGCAA-AAGTATGGACTTTTAACCGCTGGTGATTACTTGTAAGTATTTTGCATGAGGTATACTAGTAAC-TTTTATTTAATCACTTGCTAG-AAATCTTTAA----AATATC-GAGACTTGTAAATCCCTA-T-CTAATACAACATAATAT--AACTGGTCTATGA-AAAACATATAATAT-A-ACCTTTTGTCAATTT-CTAACC--G-CAAAAAC-AA-tgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|6 : CGCCTCTTGT-AAATTGATAACCT-G--ACAAAC----CAAGCGGTTAAAATatgatcactattttaaaaaataaaataaaagcaaacccaatacttatttaagttaaatccaaacgaaacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataa
gi|7 : agaacTGAC-AAATTTGGTGGCACGACAAGGCACTAACCAACTCACTGGGTGTCAAGGCAAGGCAATAACTGACAAA---------ATTGATGGAAAGACAAGGCATTTACTGAAAACAATTGGTGAGAAGACAAAGA--------------------AC--TAAT-TGACACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACTAAAATTGGTGAGAGGTCAAAGAACTGATTGACAAAATTGGTGGTAGGACAAGGCATTTACTGAAAACAATTGATGAGAGGACAAAGAACTAATTGACACAA-TTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACAAAAATTGGTGAGAGGTCAAAGtcaaaaataataaataaaagcgacccttatactcctttcagttaaattgatggcaagcagtctaggacttgtcctcgttcttgaaaatattatttggatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagaaagcagagctaattattacactggagaggcaaaattctaactgtgtcaaatctgacaacggacaatcaaaacatatgtatcacttgacgattctgttattcccagactggttacatcccatttgatgacacgtaactttgaaccaactagacaagataacttattgcaaagacaaaatgta
gi|8 : cgtccatgaaattttaccgctgaaaatttagttcaatagt-GAAGATGATGTCAATGCAATGAAAG-----AAATGTTGACCGAATACGATCCTGTTGTCGACTTTATAAACAGA-TGTGTAG--AT-TAGGCTGC-C-------ATAAC--TATTTTAC--TATAC-ATT-TG-AT-A-T-TTATTA---TGCACTATT---T-T--TA-------CA--C---------TTTATTTCTGGGAAACCAGATTTATTTATAAATATGTG---------A---------CAaa
gi|9 : ACTTTATAAAGGGACTATAAGGGTAT-TTAGGCTGGC-------AGAAC--TATGTCATCATTTACAAATATGTAT-A-C-TT-TTT---AA----ATC---TAT--TAATGATTCTA--T---------ATTATTTCTGGATAGTCAAATGTATC----AACGTGTG---------G---------TA--GTTAC-CTATTTTGAACGGTTTACAATACATGTTCA-T--AA-T--TACCCGCTG--GTCCA-TAGAGATTAAACATTAGTGTACTGCCTGA-AT-TAA-AATAAC-gattagatatttcccaaatgttgtgctacacttgtccattctgttatttccagactggttacatgtcgtttgatgccaagtacttttttaaacgaaataacttattatatagaaaaatgtaactactgta
gi|9 : a-ACTTGTAAGTCACATAT-CTAATACCAGAT-A-AT--A--ggtacttgtaagtcacatatctaataccagataatattaattattattgaaatttcattggaatatgcaatatca
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CGCCTCTTGTAAATTGATAACCAGACAAATCAAGCGATTAAAATTAAAAAATGATCATTAAAAGCGACCCTAATACTCATTTCAGTTAAATTGATGACAAGCAGTCTAGGACTTGTACTCGTGCTTGAAAATATTATATTGATTTAGAAGATAGAAGTCACTCTATAGCATTTCATATGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAAGAAATAATAATAACACTGGAGAGGCAAAATTTTAACTGTCTTAAATCTGACAACGGACAATCAAAACATATGTATCACTGGACTCGACGGAACGGTTGTGTAACACTTGACGATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTCGAACCAACTAGACAAAATAATTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|11 ): GTAAATTTGATAACCTGACAAATAATGCAATTAAAATTCAAAAATAATAAATAAAAGCGACCTTACTACTCATTTCAGTTCAGTTGATGACAATCAGTTTAGGACTTGTCCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTAGAGTAATTCATATCAAACGTGCAACACTCCTCATATCACTTTGAACCGACTAGATTGCAAAGCAAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|13 ): ATAATAACACTGGAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAGTGGTTGTGTAACACTTTACGATTCTGTTATTCCCAAACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGTAAC
Unaligned ( gi|14 ): TACACTGGAGAGGTAAAATTCTAACTGTCTTTAATCTGACAACGGACAATCAAAACATAATATGTATCTTTTTTTTTCGACAGAACGGTTGTGTAACACTGGACAATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTACACAAGTTAACTTATTGTAAAGACAAAATGTAACT
Unaligned ( gi|15 ): ACTGGATAGGCAAAAGTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACAATTCTGTTATTCCCAGAATGGTTAACATCCAATTTGATGGCATGTGACTTTGAACCGACTAGAAAGATTAACTTATTGAAAAGACAAAATGTAA
Unaligned ( gi|16 ): CTGGAGAGGCAAAATTCTAACTATCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACGATTATGTTATTCCTAGACTGGTTACATCCCATATGATGACATGTAACTTTGAACTGACTAGACAAGTTAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|17 ): AAGATGATAATAATTAAAATACAATTTTACAAATAAAAGATACTTTTTGCAGTTAAATTTATGTCTAAAATTACTAGGATTTTTCTTATTGCTTTGAAGATATTATTTGGATTTTGAAGATTGTTGTAACTCTG
Unaligned ( gi|18 ): AATTGCTGACCTCACAATAAAATCGATTACAGTTTAAGATAATCATAATAAATAAACAGATAATTGTTTCGGTTAAATTGATGATAAACATTACTTTTAGTTGTCCAAGTGCTTGAAAAATATTTGTTTGA
Unaligned ( gi|20 ): GTGGGCGGGCGGGCGGACAGGCAGGCAGGCAGATGCATAATAACTTGTACATTCTGTTATTTCCTGACTAGTTACATGGTATTTGAGGACATATATAATGTGTGTTCCAACTAGACAAGATAACGTAGCGC
Unaligned ( gi|21 ): GTAACACTTGCAATAGAAAATTCATCCATTTTGTTATTTCCAGACTGGCCGCATGCCATTTGAGGACACACTTTGTATCAGCTGGACAAGATAACTTATTACACTGAAGATTGTAAC
Unaligned ( gi|22 ): CAGAGCAGGCGTTATGGACAAAATGGCGGCAACATAGACATGTATATTTAATAACATCAGCCGATACAGAGATAATAAACGCTGAA
Unaligned ( gi|24 ): CGGGCGGGCGGGCGGGCAGGCAGGCAGGCACTACTCACATTATTAAATTGCACATCTTGATA
Alignments
lowQualScore : 1 222 2222 22222 11 11 1 2222 222 11 1 11 333333 11 22222 11111 1 1 333333333 1 555555555555555555555555555 1 1 1 11 11 1 3333333333333 1 4444444 5555555555555555 1 111 222222222 11111111 222222222222222222222 444444444444444444444444444444 111 33333333 111111111 111 11 11 222222 222222222 1 22 1 333333333333333
lowQualScore : 22 1 1 1 1 5 1 111 3333 77777 77 1 88 5 4444 1 111 88 1 1 5 1 1 1 1 1 88 666666 333 1 88 77777 1 88888 3 3 1 3 1 1 1 1 1 777777777 1 1 1 1 5 1 1 1 888888888888888888888888888 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 3 0 1 3 6 77 0 0 7 1 33 8 1 0 444 2 0 1 0 1 0 3 4444444444444 0 8 0000000 2 44 1 3 1 5 6666666666666666 3 0 1 5 1 5 222 5 777777777 00000000 777777777777777777777 1 1 3 999999999999999999999999999999 222 8 0 1 11111111 0 5 0 3 999999999 666 3 4 1 0 444 8 44 11 11 1 999999 3 3 555555555 1 0 33 1 0 1 22 8 8 1 1 111111111111111 1
lowQualScore : .. . . . . . . ... .... ..... .. . .. . .... . ... .. . . . . . . . . .. ...... ... . .. ..... . ..... . . . . . . . . . ......... . . . . . . . . ........................... . . . . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ... . . . . . . . ............. . . ....... . .. . . . . ................ . . . . . . ... . ......... ........ ..................... . . . .............................. ... . . . ........ . . . . ......... ... . . . . ... . .. .. .. . ...... . . ......... . . .. . . . .. . . . . ............... .
lowQualScore : 00 0 0 0 0 5 0 000 5555 00000 55 0 00 0 0000 0 555 00 0 0 5 0 0 0 0 0 55 555555 000 0 55 00000 0 00000 3 3 0 7 0 0 0 0 0 555555555 0 0 0 0 0 0 0 0 555555555555555555555555555 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 3 7 0 3 7 00 7 7 3 0 22 8 0 2 222 5 7 0 7 0 0 2 3333333333333 0 0 2222222 5 22 0 0 0 7 1111111111111111 0 1 7 0 4 7 444 7 777777777 33333333 999999999999999999999 7 0 2 555555555555555555555555555555 000 0 8 0 22222222 8 0 8 2 222222222 000 2 0 4 8 000 0 00 66 00 0 666666 2 2 888888888 0 0 88 2 0 0 44 0 0 0 4 222222222222222 0
consensus : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---TAGG---C--TG-CAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGATT-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAAC-TATTATTTA-ATAACT--TGCTAGAAAACTTTAA-T--AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACAT-AGCNGGTCTATAA-AAA--ATATAATAT-ACNCCNCTTG-TA-AATTGCTGACCT-G-CAAAAAC-AA-CAAGCGANTACAAT
Reference ( family-501 ) : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGGCCANNNAANTGGTATGGCAGGNCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGAT---TAAG---C--T--CANAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--NTTTT-GAGCGGTTAACAATGCATTTTGAT--AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAAC-TATTATTTA-ATAACT--TGCTAGAAAACTTTAA----AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACAT-A-CNGGTCTATAA-AAA--ATATAATAT-ACNCCNCTTG-TA-ANTTGCTGACCT-G-CAAAAAC-AA-CAAGCGANTACAAT
gi|1 : TTATCTATAATATGTAGACTTAATTCAACT-GGGAATTGAACATTTTTAAAAG---TATA----TATAATACAA-----CTAACTG--ATAATAGATTTGACAGGATAGAGTGACTAAA----ACAAGTA---GC--GAAAGGCA-CTAACTGACAAAAGTAATTGCCGGAAATGATACTAACTGATAAAATTG--GGAAGGACCAAAAAAGTAGTATGGCAGGTCA-ATG---C--ACTGAC-AAGTT-GGTAGTAGGACAATGCACATATTAACACAAATGGTGGCAGACCAATGCACTAACTGACAAAACTGACGAAATTGGTGGTAGGACAATGCACTGACTGATAA-AATTTGTGGCAGGACCAAAAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGTAGGCCAGTGCACTAGCTGACAAACCTGTTGGCAGTACAAGTCTCTAGCTGAC-ACAACTGGTTAAAAGACAAGGCATAAACTGACAAATTTGGTTGCAAGACAATGCACTAACTGACAA-AATTTATGGCAGGACAAGCCACTTACTGACAAAA-TTGATGGCAGGACAGAGCAAC-AACTGACACAATCGGCGACTGGAAAAGATCTTTATTGAC-AAAATAGGTGGCAGGACAAGGCATTTACTGACAAACTTGGCGGCAGAGCAATGCACTAACTGACTTTTTCAGCCAGATAATCATTTTCTGATGTCGCCATTATTCATTC-GATA---------------T-AT-AA-GAAGGTTATGTCATCATAATGAATAATT--CAATATCGACCAAATACGTTCCTGTTTTCCATTTCATTAATGAA-TATGTGGGT---T------------------TGTTGTACTATATATAATTATGTAT-A-T-TT-TTA---TA----ATT---TAT--TA-------TA--C---------ATTAAC----GAGAACCAGATG--TTTA---------A---------A---------TACTGTTAC--CTTTT-GAGCGGTTAACAATGCATTTTGATTAAA-TAATAGCGACTATTATCCGCTGGGGATTACAC---CGTATTTTGCGTGAGATAAGATAA---TAAC-TATTATTTA-ATAACT--TGTTAGAAAACTATAAATTCAATAT-GGAACTTGTAAAACACATTGTTAATACCACTT-ACAT-AGAAGGCCTATAA-AAA--ATATAATAG-ACACTGTTTGTTA-ATTTGCTGACCT-GAAAAAAACAAA-CAAGCGAGTACAAT
gi|10 : cttgTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAAAATTGTTGG------CATTCAATTGG--TGACAG--TACAAGGCACTAACTGATAAAATT-AATGTGAGTTCAATGCACTAACTAACGTAACTg
gi|12 : TTGGTGGCAGGACAAGTCACT---T-ATTTTTTCAGCCAGATAATCATTTACTGACGTCGACATAGCGTATTC-AATATGTA----AATAACTT-ATGAA-GAAGAGTACGTCAATATAATGCATG--C---AATGTCGACCGAATACATTCCTGTTGTCAACATAATGAATGGA-TATGCAGATG--TAGG---C--TGACAGAACTATTTCATCATATACAA-CATGTATAA-A-TT-TTA----A----ATT---CAT--TA-------TG--CACTAAATATGTTATTTCTG
gi|19 : ACTAAATGACAA-AATTGGCGACAGCACTAGACACTTTCTGCCAAAAATTGGTGGCAGGACAAGGCAAA-TATTAACACAATTGGTGGCAGG-AAAGGCCCTCACTGAC---AATTGGTGACAGAACAAG
gi|2 : agtagaTC-GATGTGTATATTAGTGACTTTAT-AAAGAAGATTATGTCACAATAATGAAT---T--AAGTGTCGACTAAAT--GTTCGTGTTGCCGACTTAATTAATGGA-TATGTGGAT---TTAGACTT--T--CAAAACTACTTAAC-ATATACAATT-----T-A-A-TT-TCA---TT----ATA---CAC--TA-------TA--C---------GTTATTTTTGGAAAACCATGTGTG---AT-AGCTTAAA---------A----------ACTGTCAC--ATTTTTGAGTGGTTA-----GCATTTTGATT-AACTAGTATTGACTATTATCCGCTGGAGAT-ACACATTAGTATTAAGCGTGAGATATAATAA---CAACTTATTATCTT-ATAACT--TGCTAGAAAACTTT-A----AATATCAGAACTTGTAAAACACATATCTAATATCACAT-ACAT-AGCTGGTCTAGAG-AAAC-ATATGATAT-ACTCTCCTTG-TA-AATTGCTTACCT---C----AC-AATCAAGCAAATACAATt
gi|23 : -AAAATTGTTGA-AGGAAAATGCACTTACTGACAAAATTGTTGACATGACAAAGCACTAATTGACTTTTTCAACCAttttaaaataaaatgaaataaaaacctcatactaatttctgtcaagttgatgactaaaatgactaggagttatctcatgcttgaaaatgctatttggattttgaaggttgttgtaactctgccctccatgtgatacgagtaataccctcatgtcctaaagcggcatctactctcaagcaacactggatgtattccatgattccaataataacactggaaatacaaaattccaacggccatatgtctgacaacaaacaatcagaacatatgtattaaattctgttatttccagactggg
gi|3 : AGAACACGGCCGTTATGGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATATGTTTAGCCAGATAATCATTTACTGATGCCGACATGATGAATACTGAAATGT
gi|3 : ATGCCGACATGATGAATA--CTGAAATGTCGATCGAATACGTTCCTGT-ATTGACTTAATCAATGGG-TATGTGGATA--TAAA---CCGT--CAAAACTATTTCACAATATACAATTATGTAT-ACA-TT-TTGAATTA----ATTATACAC--TA-------TATCC---------GTTATTTCTGGAAAATCAGATTTATTTATCAGCGTGTGACAGTTGAAA---------TACTGTTAC--GTTTT-ACGCTGTTGACATTGCATTTTGAT--GA--AAT-TC----ATTTTGCGTAAGAGATT------------------------ATAAT------AAC-TATTATTT-----------------AAACGTT-A----AATATCGGAACTTGTAAAACACACATCTTTTACCACA--A----A-CGGGTCTATAACAGC--ATATTATATAACCCAACTTG-TACAGTTGCTGATATAA-CAAAAA------AAGCGATTACAATcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|4 : agaacacggccgttatggacaaaattggtggcaggacaaggcactagctgatatgtttagccagataatcatttactg-AG-GAAGATTATGTCAACATAATGAAT---T--GAATGACGACCAAACA-------------------ATTAATGGA-TTTGTTGGT---TAAGG--C--TGGCAGAACTATTTCGCCATATACACTTATGTAT-A-CATT-GTA----A----ATT---TATATTA-------TA--C---------GATATTTCTGGAAA-CCAGATATATTTATCAACGTGTG---------ACAATTCATATACTGTTAC--ATATT-GAGCGGTTAACAATGCATTTTGATGCAA-AAGTATGGACTTTTAACCGCTGGTGATTACTTGTAAGTATTTTGCATGAGGTATACTAG---TAAC-TTTTATTTA-ATCACT--TGCTAGAAATCTTTAA----AATATCGAGACTTGTAAATC-CCTATCTAATACAACATAATATAA-CTGGTCTATGA-AAAACATATAATAT-A-ACCTTTTG-TC-AATTTCTAACC--G-CAAAAAC-AA-tgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|6 : CGCCTCTTG-TA-AATTGATAACCT-G--ACAAAC----CAAGCGGTTAAAATatgatcactattttaaaaaataaaataaaagcaaacccaatacttatttaagttaaatccaaacgaaacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataa
gi|7 : agaacCAATAGTTGAC-AAATTTGGTGGCACGACAAGGCACTAACCAACTCACTGGGTGTCAAGGCAAGGCAATAACTGACAAAATTGA---------TGGAAAGACAAGGCATTTACTGAAAACAATTGGTGAGAAGACAAAGAAC--------------TAAT---------TGACACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACTAAAATTGGTGAGAGGTCAAAGAACTGATTGACAAAATTGGTGGTAGGACAAGGCATTTACTGAAAACAATTGATGAGAGGACAAAGAACTAATTGACACAA-TTGGTGACATGATAAAG-AACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACAAAAATTGGTGAGAGGTCAAAGtcaaaaataataaataaaagcgacccttatactcctttcagttaaattgatggcaagcagtctaggacttgtcctcgttcttgaaaatattatttggatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagaaagcagagctaattattacactggagaggcaaaattctaactgtgtcaaatctgacaacggacaatcaaaacatatgtatcacttgacgattctgttattcccagactggttacatcccatttgatgacacgtaactttgaaccaactagacaagataacttattgcaaagacaaaatgta
gi|8 : cgtccatgaaattttaccgctgaaaatttagtt-GAAGATGATGTCAATGCAATGAAAG-----AAATGTTGACCGAATACGATCCTGTTGTCGACTTTATAAACAGA-TGTGTAGAT---TAGG---C--TGCCATAACTATTTTAC--TATAC-ATT-TG-AT-A-T-TTATTA---TGCACTATT---T-T--TA-------CA--C---------TTTATTTCTGGGAAACCAGATTTATTTATAAATATGTG---------A---------CAaa
gi|9 : ACTTTATAAAGGGACTATAAGGGTATTTAGG---C--TGGCAGAACTATGTCATCATTTACAAATATGTAT-A-C-TT-TTT---AA----ATC---TAT--TAATGATTCTA--T---------ATTATTTCTGGATAGTCAAATGTAT---C-AACGTGTG---------G---------TA--GTTACCTATTTT-GAACGGTTTACAATACATGTTCAT--AA-T--TACCCGCTG--GTCCA-TAGAGATTAAACATTAGTGTACTGCCTGAATTAAAATAACGGTACT-TGTAAGTCACATATCTAATACCAGATAATATTAATT--ATTATTGAAATTTgattagatatttcccaaatgttgtgctacacttgtccattctgttatttccagactggttacatgtcgtttgatgccaagtacttttttaaacgaaataacttattatatagaaaaatgtaactactgta
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): CGCCTCTTGTAAATTGATAACCAGACAAATCAAGCGATTAAAATTAAAAAATGATCATTAAAAGCGACCCTAATACTCATTTCAGTTAAATTGATGACAAGCAGTCTAGGACTTGTACTCGTGCTTGAAAATATTATATTGATTTAGAAGATAGAAGTCACTCTATAGCATTTCATATGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAAGAAATAATAATAACACTGGAGAGGCAAAATTTTAACTGTCTTAAATCTGACAACGGACAATCAAAACATATGTATCACTGGACTCGACGGAACGGTTGTGTAACACTTGACGATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTCGAACCAACTAGACAAAATAATTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|11 ): GTAAATTTGATAACCTGACAAATAATGCAATTAAAATTCAAAAATAATAAATAAAAGCGACCTTACTACTCATTTCAGTTCAGTTGATGACAATCAGTTTAGGACTTGTCCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTAGAGTAATTCATATCAAACGTGCAACACTCCTCATATCACTTTGAACCGACTAGATTGCAAAGCAAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|13 ): ATAATAACACTGGAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAGTGGTTGTGTAACACTTTACGATTCTGTTATTCCCAAACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGTAAC
Unaligned ( gi|14 ): TACACTGGAGAGGTAAAATTCTAACTGTCTTTAATCTGACAACGGACAATCAAAACATAATATGTATCTTTTTTTTTCGACAGAACGGTTGTGTAACACTGGACAATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTACACAAGTTAACTTATTGTAAAGACAAAATGTAACT
Unaligned ( gi|15 ): ACTGGATAGGCAAAAGTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACAATTCTGTTATTCCCAGAATGGTTAACATCCAATTTGATGGCATGTGACTTTGAACCGACTAGAAAGATTAACTTATTGAAAAGACAAAATGTAA
Unaligned ( gi|16 ): CTGGAGAGGCAAAATTCTAACTATCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACGATTATGTTATTCCTAGACTGGTTACATCCCATATGATGACATGTAACTTTGAACTGACTAGACAAGTTAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|17 ): AAGATGATAATAATTAAAATACAATTTTACAAATAAAAGATACTTTTTGCAGTTAAATTTATGTCTAAAATTACTAGGATTTTTCTTATTGCTTTGAAGATATTATTTGGATTTTGAAGATTGTTGTAACTCTG
Unaligned ( gi|18 ): AATTGCTGACCTCACAATAAAATCGATTACAGTTTAAGATAATCATAATAAATAAACAGATAATTGTTTCGGTTAAATTGATGATAAACATTACTTTTAGTTGTCCAAGTGCTTGAAAAATATTTGTTTGA
Unaligned ( gi|20 ): GTGGGCGGGCGGGCGGACAGGCAGGCAGGCAGATGCATAATAACTTGTACATTCTGTTATTTCCTGACTAGTTACATGGTATTTGAGGACATATATAATGTGTGTTCCAACTAGACAAGATAACGTAGCGC
Unaligned ( gi|21 ): GTAACACTTGCAATAGAAAATTCATCCATTTTGTTATTTCCAGACTGGCCGCATGCCATTTGAGGACACACTTTGTATCAGCTGGACAAGATAACTTATTACACTGAAGATTGTAAC
Unaligned ( gi|22 ): CAGAGCAGGCGTTATGGACAAAATGGCGGCAACATAGACATGTATATTTAATAACATCAGCCGATACAGAGATAATAAACGCTGAA
Unaligned ( gi|24 ): CGGGCGGGCGGGCGGGCAGGCAGGCAGGCACTACTCACATTATTAAATTGCACATCTTGATA
Alignments
lowQualScore : 1 222 2222 22222 11 11 1 2222 222 11 1 11 222222 11 22222 11111 1 1 333333333 1 555555555555555555555555555 1 1 1 11 11 1 3333333333333 1 4444444 3333333333333 1 111 222222222 11111111 222222222222222222222 444444444444444444444444444444 11 1111 2222 2222222 111 11 11 44444 11 1 22 1 4444444444444444
lowQualScore : 22 1 1 1 1 5 1 111 3333 77777 77 1 88 5 4444 1 111 88 1 1 5 1 1 1 1 1 88 999999 333 1 88 22222 1 88888 3 3 1 3 1 1 1 1 1 777777777 1 1 1 1 5 1 1 1 888888888888888888888888888 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 3 0 1 3 6 77 0 0 7 1 33 8 1 0 444 2 0 1 0 1 0 3 4444444444444 0 8 0000000 2 44 1 3 1 5 7777777777777 1 0 1 5 1 5 222 5 777777777 00000000 777777777777777777777 1 1 3 999999999999999999999999999999 11 8 0 1 5555 2222 8 0 3 0 2222222 666 3 4 1 0 444 8 44 11 11 1 11111 3 3 33 0 1 0 33 1 0 1 1 6 6 2 5555555555555555 1
lowQualScore : .. . . . . . . ... .... ..... .. . .. . .... . ... .. . . . . . . . . .. ...... ... . .. ..... . ..... . . . . . . . . . ......... . . . . . . . . ........................... . . . . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ... . . . . . . . ............. . . ....... . .. . . . . ............. . . . . . . ... . ......... ........ ..................... . . . .............................. .. . . . .... .... . . . . ....... ... . . . . ... . .. .. .. . ..... . . .. . . . .. . . . . . . . ................ .
lowQualScore : 00 0 0 0 0 5 0 000 5555 00000 55 0 00 0 0000 0 555 00 0 0 5 0 0 0 0 0 55 000000 000 0 55 00000 0 00000 3 3 0 7 0 0 0 0 0 555555555 0 0 0 0 0 0 0 0 555555555555555555555555555 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 3 7 0 3 7 00 7 7 3 0 22 8 0 2 222 5 7 0 7 0 0 2 3333333333333 0 0 2222222 5 22 0 0 0 7 4444444444444 7 1 7 0 4 7 444 7 777777777 33333333 999999999999999999999 7 0 2 555555555555555555555555555555 00 0 8 0 6666 8888 2 8 2 8 6666666 000 2 0 4 8 000 0 00 66 00 0 22222 2 2 22 2 0 0 88 2 0 0 0 7 7 2 2222222222222222 0
consensus : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAACT-ATTATTTA-ATAACT--TGCTAGAAAACTTTAA----AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
Reference ( family-501 ) : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTG-CAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAACT-ATTATTTA-ATAACT--TGCTAGAAAACTTTAA---TAATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACNCCNCTTG-TA-AATTGCTGACCT-G-CAAAAAC-AA--CAAGCGANTACAAT
gi|1 : TTATCTATAATATGTAGACTTAATTCAACT-GGGAATTGAACATTTTTAAAAG---TATA----TATAATACAA-----CTAACTG--ATAATAGATTTGACAGGATAGAGTGACTAAA----ACAAGTA---GC--GAAAGGCA-CTAACTGACAAAAGTAATTGCCGGAAATGATACTAACTGATAAAATTG--GGAAGGACCAAAAAAGTAGTATGGCAGGTCA-ATG---C--ACTGAC-AAGTT-GGTAGTAGGACAATGCACATATTAACACAAATGGTGGCAGACCAATGCACTAACTGACAAAACTGACGAAATTGGTGGTAGGACAATGCACTGACTGATAA-AATTTGTGGCAGGACCAAAAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGTAGGCCAGTGCACTAGCTGACAAACCTGTTGGCAGTACAAGTCTCTAGCTGAC-ACAACTGGTTAAAAGACAAGGCATAAACTGACAAATTTGGTTGCAAGACAATGCACTAACTGACAA-AATTTATGGCAGGACAAGCCACTTACTGACAAAA-TTGATGGCAGGACAGAGCAAC-AACTGACACAATCGGCGACTGGAAAAGATCTTTATTGAC-AAAATAGGTGGCAGGACAAGGCATTTACTGACAAACTTGGCGGCAGAGCAATGCACTAACTGACTTTTTCAGCCAGATAATCATTTTCTGATGTCGCCATTATTCATTC-GATA---------------T-AT-AA-GAAGGTTATGTCATCATAATGAATAATT--CAATATCGACCAAATACGTTCCTGTTTTCCATTTCATTAATGAA-TATGTGGGT---T---------------TGTTGTACTATATATAATTATGTAT-A-T-TT-TTA---TA----ATT---TAT--TA-------TA--C---------ATTAAC----GAGAACCAGATG--TTTA---------A---------A---------TACTGTTAC--CTTTT-GAGCGGTTAACAATGCATTTTGAT-TAAA-TAATAGCGACTATTATCCGCTGGGGATTACAC---CGTATTTTGCGTGAGATAAGATAA---TAACT-ATTATTTA-ATAACT--TGTTAGAAAACTATAAATTCAATAT-GGAACTTGTAAAACACATTGTTAATACCACTT-ACATAGAAGGCCTATAA-AAA--ATATAATAG-ACACTGTTTGTTA-ATTTGCTGACCT-GAAAAAAACAAA--CAAGCGAGTACAAT
gi|10 : cttgTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAAAATTGTTGG------CATTCAATTGG--TGACAG--TACAAGGCACTAACTGATAAAATT-AATGTGAGTTCAATGCACTAACTAACGTAACTg
gi|12 : TTGGTGGCAGGACAAGTCACT---T-ATTTTTTCAGCCAGATAATCATTTACTGACGTCGACATAGCGTATTC-AATATGTA----AATAACTT-ATGAA-GAAGAGTACGTCAATATAATGCATG--C---AATGTCGACCGAATACATTCCTGTTGTCAACATAATGAATGGA-TATGCAGATG--T-A-GGCTGACAGAACTATTTCATCATATACAA-CATGTATAA-A-TT-TTA----A----ATT---CAT--TA-------TG--CACTAAATATGTTATTTCTG
gi|19 : ACTAAATGACAA-AATTGGCGACAGCACTAGACACTTTCTGCCAAAAATTGGTGGCAGGACAAGGCAAA-TATTAACACAATTGGTGGCAGG-AAAGGCCCTCACTGAC---AATTGGTGACAGAACAAG
gi|2 : agtagaTC-GATGTGTATATTAGTGACTTTAT-AAAGAAGATTATGTCACAATAATGAAT---T--AAGTGTCGACTAAAT--GTTCGTGTTGCCGACTTAATTAATGGA-TATGTGGAT---TTA-GACTTTCAAAACTACTTAAC-ATATACAATT-----T-A-A-TT-TCA---TT----ATA---CAC--TA-------TA--C---------GTTATTTTTGGAAAACCATGTGTG---AT-AGCTTAAA---------A----------ACTGTCAC--ATTTTTGAGTGGTTA-----GCATTTTGAT-T-AACTAGTATTGACTATTATCCGCTGGAGAT-ACACATTAGTATTAAGCGTGAGATATAATAA---CAACTTATTATCTT-ATAACT--TGCTAGAAAACTTTAA-----ATATCAGAACTTGTAAAACACATATCTAATATCACAT-ACATAGCTGGTCTAGAG-AAAC-ATATGATAT-ACTCTCCTTG-TA-AATTGCTTACCT---C----AC-AAT-CAAGCAAATACAATt
gi|23 : -AAAATTGTTGA-AGGAAAATGCACTTACTGACAAAATTGTTGACATGACAAAGCACTAATTGACTTTTTCAACCAttttaaaataaaatgaaataaaaacctcatactaatttctgtcaagttgatgactaaaatgactaggagttatctcatgcttgaaaatgctatttggattttgaaggttgttgtaactctgccctccatgtgatacgagtaataccctcatgtcctaaagcggcatctactctcaagcaacactggatgtattccatgattccaataataacactggaaatacaaaattccaacggccatatgtctgacaacaaacaatcagaacatatgtattaaattctgttatttccagactggg
gi|3 : AGAACACGGCCGTTATGGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATATGTTTAGCCAGATAATCATTTACTGATGCCGACATGATGAATACTGAAATGT
gi|3 : ATGCCGACATGATGAATA--CTGAAATGTCGATCGAATACGTTCCTGT-ATTGACTTAATCAATGGG-TATGTGGATA--T-A-AACCGTCAAAACTATTTCACAATATACAATTATGTAT-ACA-TT-TTGAATTA----ATTATACAC--TA-------TATCC---------GTTATTTCTGGAAAATCAGATTTATTTATCAGCGTGTGACAGTTGAAA---------TACTGTTAC--GTTTT-ACGCTGTTGACATTGCATTTTGAT-G-AA-----AT---TCATTTTGCGTAAGAGATTA------------------------TAAT------AACT-ATTATTT-----------------AAACGTTA-----AATATCGGAACTTGTAAAACACACATCTTTTACCACA------AACGGGTCTATAACAGC--ATATTATATAACCCAACTTG-TACAGTTGCTGATATAA-CAAAAA-------AAGCGATTACAATcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|4 : agaacacggccgttatggacaaaattggtggcaggacaaggcactagctgatatgtttagccagataatcatttactg-AG-GAAGATTATGTCAACATAATGAAT---T--GAATGACGACCAAACA-------------------ATTAATGGA-TTTGTTGGT---T-AAGGCTGGCAGAACTATTTCGCCATATACACTTATGTAT-A-CATT-GTA----A----ATT---TATATTA-------TA--C---------GATATTTCTGGAAA-CCAGATATATTTATCAACGTGTG---------ACAATTCATATACTGTTAC--ATATT-GAGCGGTTAACAATGCATTTTGATGC-AA-AAGTATGGACTTTTAACCGCTGGTGATTACTTGTAAGTATTTTGCATGAGGTATACTAG---TAACT-TTTATTTA-ATCACT--TGCTAGAAATCTTTAA----AATATCGAGACTTGTAAATC-CCTATCTAATACAACATAATATAACTGGTCTATGA-AAAACATATAATAT-A-ACCTTTTG-TC-AATTTCTAACC--G-CAAAAAC-AA--tgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|5 : CGCCTCTTG-TA-AATTGATAACC-------AGAC-AAATCAAGCGATTAAAATatgatcactattttaaaaaataaaataaaagcaaacccaatacttatttaagttaaatccaaacgaaacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataa
gi|6 : CGCCTCTTG-TA-AATTGATAACCT-G--ACAAAC-----CAAGCGGTTAAAATtaaaaaatgatcattaaaagcgaccctaatactcatttcagttaaattgatgacaagcagtctaggacttgtactcgtgcttgaaaatattatattgatttagaagatagaagtcactctatagcatttcatatgaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataagaaataataataacactggagaggcaaaattttaactgtcttaaatctgacaacggacaatcaaaacatatgtatcactggactcgacggaacggttgtgtaacacttgacgattctgttattcccagactggttacatcccatttgatgacatgtaacttcgaaccaactagacaaaataatttattgcaaagacaaaatgtaact
gi|7 : agaacCAATAGTTGAC-AAATTTGGTGGCACGACAAGGCACTAACCAACTCACTGGGTGTCAAGGCAAGGCAATAACTGACAAAATTGA---------TGGAAAGACAAGGCATTTACTGAAAACAATTGGTGAGAAGACAAAGAAC--------------TAAT---------TGACACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACTAAAATTGGTGAGAGGTCAAAGAACTGATTGACAAAATTGGTGGTAGGACAAGGCATTTACTGAAAACAATTGATGAGAGGACAAAGAACTAATTGACACAA-TTGGTGACATGATAAAG-AACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACAAAAATTGGTGAGAGGTCAAAGtcaaaaataataaataaaagcgacccttatactcctttcagttaaattgatggcaagcagtctaggacttgtcctcgttcttgaaaatattatttggatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagaaagcagagctaattattacactggagaggcaaaattctaactgtgtcaaatctgacaacggacaatcaaaacatatgtatcacttgacgattctgttattcccagactggttacatcccatttgatgacacgtaactttgaaccaactagacaagataacttattgcaaagacaaaatgta
gi|8 : cgtccatgaaattttaccgctgaaaatttagtt-GAAGATGATGTCAATGCAATGAAAG-----AAATGTTGACCGAATACGATCCTGTTGTCGACTTTATAAACAGA-TGTGTAGAT---T-A-GGCTGCCATAACTATTTTAC--TATAC-ATT-TG-AT-A-T-TTATTA---TGCACTATT---T-T--TA-------CA--C---------TTTATTTCTGGGAAACCAGATTTATTTATAAATATGTG---------A---------CAaa
gi|9 : ACTTTATAAAGGGACTATAAGGGTATTT-A-GGCTGGCAGAACTATGTCATCATTTACAAATATGTAT-A-C-TT-TTT---AA----ATC---TAT--TAATGATTCTA--T---------ATTATTTCTGGATAGTCAAATGTAT---C-AACGTGTG---------G---------TA--GTTACCTATTTT-GAACGGTTTACAATACATGTTCA--T-AA-T--TACCCGCTG--GTCCA-TAGAGATTAAACATTAGTGTACTGCCTGAATTAAAATAACGGTACTT-GTAAGTCACATATCTAATACCAGATAATATTAAT--TATTATTGAAATTTgattagatatttcccaaatgttgtgctacacttgtccattctgttatttccagactggttacatgtcgtttgatgccaagtacttttttaaacgaaataacttattatatagaaaaatgtaactactgta
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTAAATTTGATAACCTGACAAATAATGCAATTAAAATTCAAAAATAATAAATAAAAGCGACCTTACTACTCATTTCAGTTCAGTTGATGACAATCAGTTTAGGACTTGTCCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTAGAGTAATTCATATCAAACGTGCAACACTCCTCATATCACTTTGAACCGACTAGATTGCAAAGCAAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|13 ): ATAATAACACTGGAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAGTGGTTGTGTAACACTTTACGATTCTGTTATTCCCAAACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGTAAC
Unaligned ( gi|14 ): TACACTGGAGAGGTAAAATTCTAACTGTCTTTAATCTGACAACGGACAATCAAAACATAATATGTATCTTTTTTTTTCGACAGAACGGTTGTGTAACACTGGACAATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTACACAAGTTAACTTATTGTAAAGACAAAATGTAACT
Unaligned ( gi|15 ): ACTGGATAGGCAAAAGTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACAATTCTGTTATTCCCAGAATGGTTAACATCCAATTTGATGGCATGTGACTTTGAACCGACTAGAAAGATTAACTTATTGAAAAGACAAAATGTAA
Unaligned ( gi|16 ): CTGGAGAGGCAAAATTCTAACTATCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACGATTATGTTATTCCTAGACTGGTTACATCCCATATGATGACATGTAACTTTGAACTGACTAGACAAGTTAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|17 ): AAGATGATAATAATTAAAATACAATTTTACAAATAAAAGATACTTTTTGCAGTTAAATTTATGTCTAAAATTACTAGGATTTTTCTTATTGCTTTGAAGATATTATTTGGATTTTGAAGATTGTTGTAACTCTG
Unaligned ( gi|18 ): AATTGCTGACCTCACAATAAAATCGATTACAGTTTAAGATAATCATAATAAATAAACAGATAATTGTTTCGGTTAAATTGATGATAAACATTACTTTTAGTTGTCCAAGTGCTTGAAAAATATTTGTTTGA
Unaligned ( gi|20 ): GTGGGCGGGCGGGCGGACAGGCAGGCAGGCAGATGCATAATAACTTGTACATTCTGTTATTTCCTGACTAGTTACATGGTATTTGAGGACATATATAATGTGTGTTCCAACTAGACAAGATAACGTAGCGC
Unaligned ( gi|21 ): GTAACACTTGCAATAGAAAATTCATCCATTTTGTTATTTCCAGACTGGCCGCATGCCATTTGAGGACACACTTTGTATCAGCTGGACAAGATAACTTATTACACTGAAGATTGTAAC
Unaligned ( gi|22 ): CAGAGCAGGCGTTATGGACAAAATGGCGGCAACATAGACATGTATATTTAATAACATCAGCCGATACAGAGATAATAAACGCTGAA
Unaligned ( gi|24 ): CGGGCGGGCGGGCGGGCAGGCAGGCAGGCACTACTCACATTATTAAATTGCACATCTTGATA
Alignments
lowQualScore : 1 222 2222 22222 11 11 1 2222 222 11 1 11 222222 11 22222 11111 1 1 333333333 1 555555555555555555555555555 1 1 1 11 11 1 3333333333333 1 4444444 2222222 1 111 222222222 11111111 222222222222222222222 444444444444444444444444444444 11 1111 2222 2222222 111 11 11 222222 11 1 22 1 4444444444444444
lowQualScore : 22 1 1 1 1 5 1 111 3333 77777 77 1 88 5 4444 1 111 88 1 1 5 1 1 1 1 1 88 999999 333 1 88 22222 1 88888 3 3 1 3 1 1 1 1 1 777777777 1 1 1 1 5 1 1 1 888888888888888888888888888 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 3 0 1 3 6 77 0 0 7 1 33 8 1 0 444 2 0 1 0 1 0 3 4444444444444 0 8 0000000 2 44 1 3 1 5 1111111 3 1 0 1 5 1 5 222 5 777777777 00000000 777777777777777777777 1 1 3 999999999999999999999999999999 11 8 0 1 5555 2222 8 0 3 0 2222222 666 3 4 1 0 444 8 44 11 11 1 999999 3 3 33 0 1 0 33 1 0 3 1 6 6 0 5555555555555555 1
lowQualScore : .. . . . . . . ... .... ..... .. . .. . .... . ... .. . . . . . . . . .. ...... ... . .. ..... . ..... . . . . . . . . . ......... . . . . . . . . ........................... . . . . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ... . . . . . . . ............. . . ....... . .. . . . . ....... . . . . . . . ... . ......... ........ ..................... . . . .............................. .. . . . .... .... . . . . ....... ... . . . . ... . .. .. .. . ...... . . .. . . . .. . . . . . . . ................ .
lowQualScore : 00 0 0 0 0 5 0 000 5555 00000 55 0 00 0 0000 0 555 00 0 0 5 0 0 0 0 0 55 000000 000 0 55 00000 0 00000 3 3 0 7 0 0 0 0 0 555555555 0 0 0 0 0 0 0 0 555555555555555555555555555 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 3 7 0 3 7 00 7 7 3 0 22 8 0 2 222 5 7 0 7 0 0 2 3333333333333 0 0 2222222 5 22 0 0 0 7 9999999 0 7 1 7 0 4 7 444 7 777777777 33333333 999999999999999999999 7 0 2 555555555555555555555555555555 00 0 8 0 6666 8888 2 8 2 8 6666666 000 2 0 4 8 000 0 00 66 00 0 666666 2 2 22 2 0 0 88 2 0 7 0 7 7 3 2222222222222222 0
consensus : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAAC-TATTATTTA-ATAACT--TGCTAGAAAACTTTAA-T--AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
Reference ( family-501 ) : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAAC-TATTATTTA-ATAACT--TGCTAGAAAACTTTAA----AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
gi|1 : TTATCTATAATATGTAGACTTAATTCAACT-GGGAATTGAACATTTTTAAAAG---TATA----TATAATACAA-----CTAACTG--ATAATAGATTTGACAGGATAGAGTGACTAAA----ACAAGTA---GC--GAAAGGCA-CTAACTGACAAAAGTAATTGCCGGAAATGATACTAACTGATAAAATTG--GGAAGGACCAAAAAAGTAGTATGGCAGGTCA-ATG---C--ACTGAC-AAGTT-GGTAGTAGGACAATGCACATATTAACACAAATGGTGGCAGACCAATGCACTAACTGACAAAACTGACGAAATTGGTGGTAGGACAATGCACTGACTGATAA-AATTTGTGGCAGGACCAAAAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGTAGGCCAGTGCACTAGCTGACAAACCTGTTGGCAGTACAAGTCTCTAGCTGAC-ACAACTGGTTAAAAGACAAGGCATAAACTGACAAATTTGGTTGCAAGACAATGCACTAACTGACAA-AATTTATGGCAGGACAAGCCACTTACTGACAAAA-TTGATGGCAGGACAGAGCAAC-AACTGACACAATCGGCGACTGGAAAAGATCTTTATTGAC-AAAATAGGTGGCAGGACAAGGCATTTACTGACAAACTTGGCGGCAGAGCAATGCACTAACTGACTTTTTCAGCCAGATAATCATTTTCTGATGTCGCCATTATTCATTC-GATA---------------T-AT-AA-GAAGGTTATGTCATCATAATGAATAATT--CAATATCGACCAAATACGTTCCTGTTTTCCATTTCATTAATGAA-TATGTGGGT---T---------------TGTTGTACTATATATAATTATGTAT-A-T-TT-TTA---TA----ATT---TAT--TA-------TA--C---------ATTAAC----GAGAACCAGATG--TTTA---------A---------A---------TACTGTTAC--CTTTT-GAGCGGTTAACAATGCATTTTGAT-TAAA-TAATAGCGACTATTATCCGCTGGGGATTACAC---CGTATTTTGCGTGAGATAAGATAA---TAAC-TATTATTTA-ATAACT--TGTTAGAAAACTATAAATTCAATAT-GGAACTTGTAAAACACATTGTTAATACCACTT-ACATAGAAGGCCTATAA-AAA--ATATAATAG-ACACTGTTTGTTA-ATTTGCTGACCT-GAAAAAAACAAA--CAAGCGAGTACAAT
gi|10 : cttgTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAAAATTGTTGG------CATTCAATTGG--TGACAG--TACAAGGCACTAACTGATAAAATT-AATGTGAGTTCAATGCACTAACTAACGTAACTg
gi|12 : TTGGTGGCAGGACAAGTCACT---T-ATTTTTTCAGCCAGATAATCATTTACTGACGTCGACATAGCGTATTC-AATATGTA----AATAACTT-ATGAA-GAAGAGTACGTCAATATAATGCATG--C---AATGTCGACCGAATACATTCCTGTTGTCAACATAATGAATGGA-TATGCAGATG--T-A-GGCTGACAGAACTATTTCATCATATACAA-CATGTATAA-A-TT-TTA----A----ATT---CAT--TA-------TG--CACTAAATATGTTATTTCTG
gi|19 : ACTAAATGACAA-AATTGGCGACAGCACTAGACACTTTCTGCCAAAAATTGGTGGCAGGACAAGGCAAA-TATTAACACAATTGGTGGCAGG-AAAGGCCCTCACTGAC---AATTGGTGACAGAACAAG
gi|2 : agtagaTC-GATGTGTATATTAGTGACTTTAT-AAAGAAGATTATGTCACAATAATGAAT---T--AAGTGTCGACTAAAT--GTTCGTGTTGCCGACTTAATTAATGGA-TATGTGGAT---TTA-GACTTTCAAAACTACTTAAC-ATATACAATT-----T-A-A-TT-TCA---TT----ATA---CAC--TA-------TA--C---------GTTATTTTTGGAAAACCATGTGTG---AT-AGCTTAAA---------A----------ACTGTCAC--ATTTTTGAGTGGTTA-----GCATTTTGAT-T-AACTAGTATTGACTATTATCCGCTGGAGA-TACACATTAGTATTAAGCGTGAGATATAATAA---CAACTTATTATCTT-ATAACT--TGCTAGAAAACTTT-A----AATATCAGAACTTGTAAAACACATATCTAATATCACAT-ACATAGCTGGTCTAGAG-AAAC-ATATGATAT-ACTCTCCTTG-TA-AATTGCTTACCT---C----AC-AAT-CAAGCAAATACAATt
gi|23 : -AAAATTGTTGA-AGGAAAATGCACTTACTGACAAAATTGTTGACATGACAAAGCACTAATTGACTTTTTCAACCAttttaaaataaaatgaaataaaaacctcatactaatttctgtcaagttgatgactaaaatgactaggagttatctcatgcttgaaaatgctatttggattttgaaggttgttgtaactctgccctccatgtgatacgagtaataccctcatgtcctaaagcggcatctactctcaagcaacactggatgtattccatgattccaataataacactggaaatacaaaattccaacggccatatgtctgacaacaaacaatcagaacatatgtattaaattctgttatttccagactggg
gi|3 : AGAACACGGCCGTTATGGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATATGTTTAGCCAGATAATCATTTACTGATGCCGACATGATGAATACTGAAATGT
gi|3 : ATGCCGACATGATGAATA--CTGAAATGTCGATCGAATACGTTCCTGT-ATTGACTTAATCAATGGG-TATGTGGATA--T-A-AACCGTCAAAACTATTTCACAATATACAATTATGTAT-ACA-TT-TTGAATTA----ATTATACAC--TA-------TATCC---------GTTATTTCTGGAAAATCAGATTTATTTATCAGCGTGTGACAGTTGAAA---------TACTGTTAC--GTTTT-ACGCTGTTGACATTGCATTTTGAT-G-AA-----AT---TCATTTTGCGTAAGAGATTA------------------------TAAT------AAC-TATTATTT-----------------AAACGTT-A----AATATCGGAACTTGTAAAACACACATCTTTTACCACA------AACGGGTCTATAACAGC--ATATTATATAACCCAACTTG-TACAGTTGCTGATATAA-CAAAAA-------AAGCGATTACAATcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|4 : agaacacggccgttatggacaaaattggtggcaggacaaggcactagctgatatgtttagccagataatcatttactg-AG-GAAGATTATGTCAACATAATGAAT---T--GAATGACGACCAAACA-------------------ATTAATGGA-TTTGTTGGT---T-AAGGCTGGCAGAACTATTTCGCCATATACACTTATGTAT-A-CATT-GTA----A----ATT---TATATTA-------TA--C---------GATATTTCTGGAAA-CCAGATATATTTATCAACGTGTG---------ACAATTCATATACTGTTAC--ATATT-GAGCGGTTAACAATGCATTTTGATGC-AA-AAGTATGGACTTTTAACCGCTGGTGATTACTTGTAAGTATTTTGCATGAGGTATACTAG---TAAC-TTTTATTTA-ATCACT--TGCTAGAAATCTTTAA----AATATCGAGACTTGTAAATC-CCTATCTAATACAACATAATATAACTGGTCTATGA-AAAACATATAATAT-A-ACCTTTTG-TC-AATTTCTAACC--G-CAAAAAC-AA--tgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|5 : CGCCTCTTG-TA-AATTGATAACC-------AGAC-AAATCAAGCGATTAAAATatgatcactattttaaaaaataaaataaaagcaaacccaatacttatttaagttaaatccaaacgaaacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataa
gi|6 : CGCCTCTTG-TA-AATTGATAACCT-G--ACAAAC-----CAAGCGGTTAAAATtaaaaaatgatcattaaaagcgaccctaatactcatttcagttaaattgatgacaagcagtctaggacttgtactcgtgcttgaaaatattatattgatttagaagatagaagtcactctatagcatttcatatgaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataagaaataataataacactggagaggcaaaattttaactgtcttaaatctgacaacggacaatcaaaacatatgtatcactggactcgacggaacggttgtgtaacacttgacgattctgttattcccagactggttacatcccatttgatgacatgtaacttcgaaccaactagacaaaataatttattgcaaagacaaaatgtaact
gi|7 : agaacCAATAGTTGAC-AAATTTGGTGGCACGACAAGGCACTAACCAACTCACTGGGTGTCAAGGCAAGGCAATAACTGACAAAATTGA---------TGGAAAGACAAGGCATTTACTGAAAACAATTGGTGAGAAGACAAAGAAC--------------TAAT---------TGACACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACTAAAATTGGTGAGAGGTCAAAGAACTGATTGACAAAATTGGTGGTAGGACAAGGCATTTACTGAAAACAATTGATGAGAGGACAAAGAACTAATTGACACAA-TTGGTGACATGATAAAG-AACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACAAAAATTGGTGAGAGGTCAAAGtcaaaaataataaataaaagcgacccttatactcctttcagttaaattgatggcaagcagtctaggacttgtcctcgttcttgaaaatattatttggatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagaaagcagagctaattattacactggagaggcaaaattctaactgtgtcaaatctgacaacggacaatcaaaacatatgtatcacttgacgattctgttattcccagactggttacatcccatttgatgacacgtaactttgaaccaactagacaagataacttattgcaaagacaaaatgta
gi|8 : cgtccatgaaattttaccgctgaaaatttagtt-GAAGATGATGTCAATGCAATGAAAG-----AAATGTTGACCGAATACGATCCTGTTGTCGACTTTATAAACAGA-TGTGTAGAT---T-A-GGCTGCCATAACTATTTTAC--TATAC-ATT-TG-AT-A-T-TTATTA---TGCACTATT---T-T--TA-------CA--C---------TTTATTTCTGGGAAACCAGATTTATTTATAAATATGTG---------A---------CAaa
gi|9 : ACTTTATAAAGGGACTATAAGGGTATTT-A-GGCTGGCAGAACTATGTCATCATTTACAAATATGTAT-A-C-TT-TTT---AA----ATC---TAT--TAATGATTCTA--T---------ATTATTTCTGGATAGTCAAATGTAT---C-AACGTGTG---------G---------TA--GTTACCTATTTT-GAACGGTTTACAATACATGTTCA--T-AA-T--TACCCGCTG--GTCCA-TAGAGATTAAACATTAGTGTACTGCCTGAATTAAAATAACGGTACT-TGTAAGTCACATATCTAATACCAGATAATATTAATT--ATTATTGAAATTTgattagatatttcccaaatgttgtgctacacttgtccattctgttatttccagactggttacatgtcgtttgatgccaagtacttttttaaacgaaataacttattatatagaaaaatgtaactactgta
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTAAATTTGATAACCTGACAAATAATGCAATTAAAATTCAAAAATAATAAATAAAAGCGACCTTACTACTCATTTCAGTTCAGTTGATGACAATCAGTTTAGGACTTGTCCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTAGAGTAATTCATATCAAACGTGCAACACTCCTCATATCACTTTGAACCGACTAGATTGCAAAGCAAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|13 ): ATAATAACACTGGAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAGTGGTTGTGTAACACTTTACGATTCTGTTATTCCCAAACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGTAAC
Unaligned ( gi|14 ): TACACTGGAGAGGTAAAATTCTAACTGTCTTTAATCTGACAACGGACAATCAAAACATAATATGTATCTTTTTTTTTCGACAGAACGGTTGTGTAACACTGGACAATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTACACAAGTTAACTTATTGTAAAGACAAAATGTAACT
Unaligned ( gi|15 ): ACTGGATAGGCAAAAGTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACAATTCTGTTATTCCCAGAATGGTTAACATCCAATTTGATGGCATGTGACTTTGAACCGACTAGAAAGATTAACTTATTGAAAAGACAAAATGTAA
Unaligned ( gi|16 ): CTGGAGAGGCAAAATTCTAACTATCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACGATTATGTTATTCCTAGACTGGTTACATCCCATATGATGACATGTAACTTTGAACTGACTAGACAAGTTAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|17 ): AAGATGATAATAATTAAAATACAATTTTACAAATAAAAGATACTTTTTGCAGTTAAATTTATGTCTAAAATTACTAGGATTTTTCTTATTGCTTTGAAGATATTATTTGGATTTTGAAGATTGTTGTAACTCTG
Unaligned ( gi|18 ): AATTGCTGACCTCACAATAAAATCGATTACAGTTTAAGATAATCATAATAAATAAACAGATAATTGTTTCGGTTAAATTGATGATAAACATTACTTTTAGTTGTCCAAGTGCTTGAAAAATATTTGTTTGA
Unaligned ( gi|20 ): GTGGGCGGGCGGGCGGACAGGCAGGCAGGCAGATGCATAATAACTTGTACATTCTGTTATTTCCTGACTAGTTACATGGTATTTGAGGACATATATAATGTGTGTTCCAACTAGACAAGATAACGTAGCGC
Unaligned ( gi|21 ): GTAACACTTGCAATAGAAAATTCATCCATTTTGTTATTTCCAGACTGGCCGCATGCCATTTGAGGACACACTTTGTATCAGCTGGACAAGATAACTTATTACACTGAAGATTGTAAC
Unaligned ( gi|22 ): CAGAGCAGGCGTTATGGACAAAATGGCGGCAACATAGACATGTATATTTAATAACATCAGCCGATACAGAGATAATAAACGCTGAA
Unaligned ( gi|24 ): CGGGCGGGCGGGCGGGCAGGCAGGCAGGCACTACTCACATTATTAAATTGCACATCTTGATA
Alignments
lowQualScore : 1 222 2222 22222 11 11 1 2222 222 11 1 11 222222 11 22222 11111 1 1 333333333 1 1 7777777777777777777777 1 1 1 11 11 1 3333333333333 1 4444444 2222222 1 111 222222222 11111111 222222222222222222222 444444444444444444444444444444 11 1111 2222 2222222 111 11 11 44444 11 1 22 1 4444444444444444
lowQualScore : 22 1 1 1 1 5 1 111 3333 77777 77 1 88 5 4444 1 111 88 1 1 5 1 1 1 1 1 88 999999 333 1 88 22222 1 88888 3 3 1 3 1 1 1 1 1 777777777 1 1 1 1 5 1 1 1 5 2222222222222222222222 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 3 0 1 3 6 77 0 0 7 1 33 8 1 0 444 2 0 1 0 1 0 3 4444444444444 0 8 0000000 2 44 1 3 1 5 1111111 3 1 0 1 5 1 5 222 5 777777777 00000000 777777777777777777777 1 1 3 999999999999999999999999999999 11 8 0 1 5555 2222 8 0 3 0 2222222 666 3 4 1 0 444 8 44 11 11 1 11111 3 3 33 0 1 0 33 1 0 3 1 6 6 0 5555555555555555 1
lowQualScore : .. . . . . . . ... .... ..... .. . .. . .... . ... .. . . . . . . . . .. ...... ... . .. ..... . ..... . . . . . . . . . ......... . . . . . . . . . ...................... . . . . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ... . . . . . . . ............. . . ....... . .. . . . . ....... . . . . . . . ... . ......... ........ ..................... . . . .............................. .. . . . .... .... . . . . ....... ... . . . . ... . .. .. .. . ..... . . .. . . . .. . . . . . . . ................ .
lowQualScore : 00 0 0 0 0 5 0 000 5555 00000 55 0 00 0 0000 0 555 00 0 0 5 0 0 0 0 0 55 000000 000 0 55 00000 0 00000 3 3 0 7 0 0 0 0 0 555555555 0 0 0 0 0 0 0 0 0 5555555555555555555555 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 3 7 0 3 7 00 7 7 3 0 22 8 0 2 222 5 7 0 7 0 0 2 3333333333333 0 0 2222222 5 22 0 0 0 7 9999999 0 7 1 7 0 4 7 444 7 777777777 33333333 999999999999999999999 7 0 2 555555555555555555555555555555 00 0 8 0 6666 8888 2 8 2 8 6666666 000 2 0 4 8 000 0 00 66 00 0 22222 2 2 22 2 0 0 88 2 0 7 0 7 7 3 2222222222222222 0
consensus : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAACT-ATTATTTA-ATAACT--TGCTAGAAAACTTTAA----AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
Reference ( family-501 ) : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAACT-ATTATTTA-ATAACT--TGCTAGAAAACTTTAA---TAATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
gi|1 : TTATCTATAATATGTAGACTTAATTCAACT-GGGAATTGAACATTTTTAAAAG---TATA----TATAATACAA-----CTAACTG--ATAATAGATTTGACAGGATAGAGTGACTAAA----ACAAGTA---GC--GAAAGGCA-CTAACTGACAAAAGTAATTGCCGGAAATGATACTAACTGATAAAATTG--GGAAGGACCAAAAAAGTAGTATGGCAGGTCA-ATG---C--ACTGAC-AAGTT-GGTAGTAGGACAATGCACATATTAACACAAATGGTGGCAGACCAATGCACTAACTGACAAAACTGACGAAATTGGTGGTAGGACAATGCACTGACTGATAA-AATTTGTGGCAGGACCAAAAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGTAGGCCAGTGCACTAGCTGACAAACCTGTTGGCAGTACAAGTCTCTAGCTGAC-ACAACTGGTTAAAAGACAAGGCATAAACTGACAAATTTGGTTGCAAGACAATGCACTAACTGACAA-AATTTATGGCAGGACAAGCCACTTACTGACAAAA-TTGATGGCAGGACAGAGCAAC-AACTGACACAATCGGCGACTGGAAAAGATCTTTATTGAC-AAAATAGGTGGCAGGACAAGGCATTTACTGACAAACTTGGCGGCAGAGCAATGCACTAACTGACTTTTTCAGCCAGATAATCATTTTCTGATGTCGCCATTATTCATTC-GATA---------------T-AT-AA-GAAGGTTATGTCATCATAATGAATAATT--CAATATCGACCAAATACGTTCCTGTTTTCCATTTCATTAATGAA-TATGTGGGT---T---------------TGTTGTACTATATATAATTATGTAT-A-T-TT-TTA---TA----ATT---TAT--TA-------TA--C---------ATTAAC----GAGAACCAGATG--TTTA---------A---------A---------TACTGTTAC--CTTTT-GAGCGGTTAACAATGCATTTTGAT-TAAA-TAATAGCGACTATTATCCGCTGGGGATTACAC---CGTATTTTGCGTGAGATAAGATAA---TAACT-ATTATTTA-ATAACT--TGTTAGAAAACTATAAATTCAATAT-GGAACTTGTAAAACACATTGTTAATACCACTT-ACATAGAAGGCCTATAA-AAA--ATATAATAG-ACACTGTTTGTTA-ATTTGCTGACCT-GAAAAAAACAAA--CAAGCGAGTACAAT
gi|10 : cttgTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAAAATTGTTGG------CATTCAATTGG--TGACAG--TACAAGGCACTAACTGATAAAATT-AATGTGAGTTCAATGCACTAACTAACGTAACTg
gi|12 : TTGGTGGCAGGACAAGTCACT---T-ATTTTTTCAGCCAGATAATCATTTACTGACGTCGACATAGCGTATTC-AATATGTA----AATAACTT-ATGAA-GAAGAGTACGTCAATATAATGCATG--C---AATGTCGACCGAATACATTCCTGTTGTCAACATAATGAATGGA-TATGCAGATG--T-A-GGCTGACAGAACTATTTCATCATATACAA-CATGTATAA-A-TT-TTA----A----ATT---CAT--TA-------TG--CACTAAATATGTTATTTCTG
gi|19 : ACTAAATGACAA-AATTGGCGACAGCACTAGACACTTTCTGCCAAAAATTGGTGGCAGGACAAGGCAAA-TATTAACACAATTGGTGGCAGG-AAAGGCCCTCACTGAC---AATTGGTGACAGAACAAG
gi|2 : agtagaTC-GATGTGTATATTAGTGACTTTAT-AAAGAAGATTATGTCACAATAATGAAT---T--AAGTGTCGACTAAAT--GTTCGTGTTGCCGACTTAATTAATGGA-TATGTGGAT---TTA-GACTTTCAAAACTACTTAAC-ATATACAATT-----T-A-A-TT-TCA---TT----ATA---CAC--TA-------TA--C---------GTTATTTTTGGAAAACCATGTGTG---AT-AGCTTAAA---------A----------ACTGTCAC--ATTTTTGAGTGGTTA-----GCATTTTGAT-T-AACTAGTATTGACTATTATCCGCTGGAGAT-ACACATTAGTATTAAGCGTGAGATATAATAA---CAACTTATTATCTT-ATAACT--TGCTAGAAAACTTTAA-----ATATCAGAACTTGTAAAACACATATCTAATATCACAT-ACATAGCTGGTCTAGAG-AAAC-ATATGATAT-ACTCTCCTTG-TA-AATTGCTTACCT---C----AC-AAT-CAAGCAAATACAATt
gi|23 : -AAAATTGTTGA-AGGAAAATGCACTTACTGACAAAATTGTTGACATGACAAAGCACTAATTGACTTTTTCAACCAttttaaaataaaatgaaataaaaacctcatactaatttctgtcaagttgatgactaaaatgactaggagttatctcatgcttgaaaatgctatttggattttgaaggttgttgtaactctgccctccatgtgatacgagtaataccctcatgtcctaaagcggcatctactctcaagcaacactggatgtattccatgattccaataataacactggaaatacaaaattccaacggccatatgtctgacaacaaacaatcagaacatatgtattaaattctgttatttccagactggg
gi|3 : AGAACACGGCCGTTATGGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATATGTTTAGCCAGATAATCATTTACTGATGCCGACATGATGAATACTGAAATGT
gi|3 : ATGCCGACATGATGAATA--CTGAAATGTCGATCGAATACGTTCCTGT-ATTGACTTAATCAATGGG-TATGTGGATA--T-A-AACCGTCAAAACTATTTCACAATATACAATTATGTAT-ACA-TT-TTGAATTA----ATTATACAC--TA-------TATCC---------GTTATTTCTGGAAAATCAGATTTATTTATCAGCGTGTGACAGTTGAAA---------TACTGTTAC--GTTTT-ACGCTGTTGACATTGCATTTTGAT-G-AA-----AT---TCATTTTGCGTAAGAGATTA------------------------TAAT------AACT-ATTATTT-----------------AAACGTTA-----AATATCGGAACTTGTAAAACACACATCTTTTACCACA------AACGGGTCTATAACAGC--ATATTATATAACCCAACTTG-TACAGTTGCTGATATAA-CAAAAA-------AAGCGATTACAATcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|4 : agaacacggccgttatggacaaaattggtggcaggacaaggcactagctgatatgtttagccagataatcatttactg-AG-GAAGATTATGTCAACATAATGAAT---T--GAATGACGACCAAACA-------------------ATTAATGGA-TTTGTTGGT---T-AAGGCTGGCAGAACTATTTCGCCATATACACTTATGTAT-A-CATT-GTA----A----ATT---TATATTA-------TA--C---------GATATTTCTGGAAA-CCAGATATATTTATCAACGTGTG---------ACAATTCATATACTGTTAC--ATATT-GAGCGGTTAACAATGCATTTTGATGC-AA-AAGTATGGACTTTTAACCGCTGGTGATTACTTGTAAGTATTTTGCATGAGGTATACTAG---TAACT-TTTATTTA-ATCACT--TGCTAGAAATCTTTAA----AATATCGAGACTTGTAAATC-CCTATCTAATACAACATAATATAACTGGTCTATGA-AAAACATATAATAT-A-ACCTTTTG-TC-AATTTCTAACC--G-CAAAAAC-AA--tgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|5 : CGCCTCTTG-TA-AATTGATAACC-------AGAC-AAATCAAGCGATTAAAATatgatcactattttaaaaaataaaataaaagcaaacccaatacttatttaagttaaatccaaacgaaacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataa
gi|6 : CGCCTCTTG-TA-AATTGATAACCT-G--ACAAAC-----CAAGCGGTTAAAATtaaaaaatgatcattaaaagcgaccctaatactcatttcagttaaattgatgacaagcagtctaggacttgtactcgtgcttgaaaatattatattgatttagaagatagaagtcactctatagcatttcatatgaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataagaaataataataacactggagaggcaaaattttaactgtcttaaatctgacaacggacaatcaaaacatatgtatcactggactcgacggaacggttgtgtaacacttgacgattctgttattcccagactggttacatcccatttgatgacatgtaacttcgaaccaactagacaaaataatttattgcaaagacaaaatgtaact
gi|7 : agaacCAATAGTTGAC-AAATTTGGTGGCACGACAAGGCACTAACCAACTCACTGGGTGTCAAGGCAAGGCAATAACTGACA---------AAATTGATGGAAAGACAAGGCATTTACTGAAAACAATTGGTGAGAAGACAAAGAAC-TAAT----------------------TGACACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACTAAAATTGGTGAGAGGTCAAAGAACTGATTGACAAAATTGGTGGTAGGACAAGGCATTTACTGAAAACAATTGATGAGAGGACAAAGAACTAATTGACACAA-TTGGTGACATGATAAAG-AACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACAAAAATTGGTGAGAGGTCAAAGtcaaaaataataaataaaagcgacccttatactcctttcagttaaattgatggcaagcagtctaggacttgtcctcgttcttgaaaatattatttggatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagaaagcagagctaattattacactggagaggcaaaattctaactgtgtcaaatctgacaacggacaatcaaaacatatgtatcacttgacgattctgttattcccagactggttacatcccatttgatgacacgtaactttgaaccaactagacaagataacttattgcaaagacaaaatgta
gi|8 : cgtccatgaaattttaccgctgaaaatttagtt-GAAGATGATGTCAATGCAATGAAAG-----AAATGTTGACCGAATACGATCCTGTTGTCGACTTTATAAACAGA-TGTGTAGAT---T-A-GGCTGCCATAACTATTTTAC--TATAC-ATT-TG-AT-A-T-TTATTA---TGCACTATT---T-T--TA-------CA--C---------TTTATTTCTGGGAAACCAGATTTATTTATAAATATGTG---------A---------CAaa
gi|9 : ACTTTATAAAGGGACTATAAGGGTATTT-A-GGCTGGCAGAACTATGTCATCATTTACAAATATGTAT-A-C-TT-TTT---AA----ATC---TAT--TAATGATTCTA--T---------ATTATTTCTGGATAGTCAAATGTAT---C-AACGTGTG---------G---------TA--GTTACCTATTTT-GAACGGTTTACAATACATGTTCA--T-AA-T--TACCCGCTG--GTCCA-TAGAGATTAAACATTAGTGTACTGCCTGAATTAAAATAACGGTACTT-GTAAGTCACATATCTAATACCAGATAATATTAAT--TATTATTGAAATTTgattagatatttcccaaatgttgtgctacacttgtccattctgttatttccagactggttacatgtcgtttgatgccaagtacttttttaaacgaaataacttattatatagaaaaatgtaactactgta
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTAAATTTGATAACCTGACAAATAATGCAATTAAAATTCAAAAATAATAAATAAAAGCGACCTTACTACTCATTTCAGTTCAGTTGATGACAATCAGTTTAGGACTTGTCCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTAGAGTAATTCATATCAAACGTGCAACACTCCTCATATCACTTTGAACCGACTAGATTGCAAAGCAAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|13 ): ATAATAACACTGGAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAGTGGTTGTGTAACACTTTACGATTCTGTTATTCCCAAACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGTAAC
Unaligned ( gi|14 ): TACACTGGAGAGGTAAAATTCTAACTGTCTTTAATCTGACAACGGACAATCAAAACATAATATGTATCTTTTTTTTTCGACAGAACGGTTGTGTAACACTGGACAATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTACACAAGTTAACTTATTGTAAAGACAAAATGTAACT
Unaligned ( gi|15 ): ACTGGATAGGCAAAAGTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACAATTCTGTTATTCCCAGAATGGTTAACATCCAATTTGATGGCATGTGACTTTGAACCGACTAGAAAGATTAACTTATTGAAAAGACAAAATGTAA
Unaligned ( gi|16 ): CTGGAGAGGCAAAATTCTAACTATCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACGATTATGTTATTCCTAGACTGGTTACATCCCATATGATGACATGTAACTTTGAACTGACTAGACAAGTTAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|17 ): AAGATGATAATAATTAAAATACAATTTTACAAATAAAAGATACTTTTTGCAGTTAAATTTATGTCTAAAATTACTAGGATTTTTCTTATTGCTTTGAAGATATTATTTGGATTTTGAAGATTGTTGTAACTCTG
Unaligned ( gi|18 ): AATTGCTGACCTCACAATAAAATCGATTACAGTTTAAGATAATCATAATAAATAAACAGATAATTGTTTCGGTTAAATTGATGATAAACATTACTTTTAGTTGTCCAAGTGCTTGAAAAATATTTGTTTGA
Unaligned ( gi|20 ): GTGGGCGGGCGGGCGGACAGGCAGGCAGGCAGATGCATAATAACTTGTACATTCTGTTATTTCCTGACTAGTTACATGGTATTTGAGGACATATATAATGTGTGTTCCAACTAGACAAGATAACGTAGCGC
Unaligned ( gi|21 ): GTAACACTTGCAATAGAAAATTCATCCATTTTGTTATTTCCAGACTGGCCGCATGCCATTTGAGGACACACTTTGTATCAGCTGGACAAGATAACTTATTACACTGAAGATTGTAAC
Unaligned ( gi|22 ): CAGAGCAGGCGTTATGGACAAAATGGCGGCAACATAGACATGTATATTTAATAACATCAGCCGATACAGAGATAATAAACGCTGAA
Unaligned ( gi|24 ): CGGGCGGGCGGGCGGGCAGGCAGGCAGGCACTACTCACATTATTAAATTGCACATCTTGATA
Alignments
lowQualScore : 1 222 2222 22222 11 11 1 2222 222 11 1 11 222222 11 22222 11111 1 1 333333333 1 555555555555555555555555555 1 1 1 11 11 1 3333333333333 1 4444444 2222222 1 111 222222222 11111111 222222222222222222222 444444444444444444444444444444 11 1111 2222 2222222 111 11 11 222222 11 1 22 1 4444444444444444
lowQualScore : 22 1 1 1 1 5 1 111 3333 77777 77 1 88 5 4444 1 111 88 1 1 5 1 1 1 1 1 88 999999 333 1 88 22222 1 88888 3 3 1 3 1 1 1 1 1 777777777 1 1 1 1 5 1 1 1 888888888888888888888888888 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 3 0 1 3 6 77 0 0 7 1 33 8 1 0 444 2 0 1 0 1 0 3 4444444444444 0 8 0000000 2 44 1 3 1 5 1111111 3 1 0 1 5 1 5 222 5 777777777 00000000 777777777777777777777 1 1 3 999999999999999999999999999999 11 8 0 1 5555 2222 8 0 3 0 2222222 666 3 4 1 0 444 8 44 11 11 1 999999 3 3 33 0 1 0 33 1 0 3 1 6 6 0 5555555555555555 1
lowQualScore : .. . . . . . . ... .... ..... .. . .. . .... . ... .. . . . . . . . . .. ...... ... . .. ..... . ..... . . . . . . . . . ......... . . . . . . . . ........................... . . . . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ... . . . . . . . ............. . . ....... . .. . . . . ....... . . . . . . . ... . ......... ........ ..................... . . . .............................. .. . . . .... .... . . . . ....... ... . . . . ... . .. .. .. . ...... . . .. . . . .. . . . . . . . ................ .
lowQualScore : 00 0 0 0 0 5 0 000 5555 00000 55 0 00 0 0000 0 555 00 0 0 5 0 0 0 0 0 55 000000 000 0 55 00000 0 00000 3 3 0 7 0 0 0 0 0 555555555 0 0 0 0 0 0 0 0 555555555555555555555555555 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 3 7 0 3 7 00 7 7 3 0 22 8 0 2 222 5 7 0 7 0 0 2 3333333333333 0 0 2222222 5 22 0 0 0 7 9999999 0 7 1 7 0 4 7 444 7 777777777 33333333 999999999999999999999 7 0 2 555555555555555555555555555555 00 0 8 0 6666 8888 2 8 2 8 6666666 000 2 0 4 8 000 0 00 66 00 0 666666 2 2 22 2 0 0 88 2 0 7 0 7 7 3 2222222222222222 0
consensus : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAAC-TATTATTTA-ATAACT--TGCTAGAAAACTTTAA-T--AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
Reference ( family-501 ) : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAAC-TATTATTTA-ATAACT--TGCTAGAAAACTTTAA----AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
gi|1 : TTATCTATAATATGTAGACTTAATTCAACT-GGGAATTGAACATTTTTAAAAG---TATA----TATAATACAA-----CTAACTG--ATAATAGATTTGACAGGATAGAGTGACTAAA----ACAAGTA---GC--GAAAGGCA-CTAACTGACAAAAGTAATTGCCGGAAATGATACTAACTGATAAAATTG--GGAAGGACCAAAAAAGTAGTATGGCAGGTCA-ATG---C--ACTGAC-AAGTT-GGTAGTAGGACAATGCACATATTAACACAAATGGTGGCAGACCAATGCACTAACTGACAAAACTGACGAAATTGGTGGTAGGACAATGCACTGACTGATAA-AATTTGTGGCAGGACCAAAAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGTAGGCCAGTGCACTAGCTGACAAACCTGTTGGCAGTACAAGTCTCTAGCTGAC-ACAACTGGTTAAAAGACAAGGCATAAACTGACAAATTTGGTTGCAAGACAATGCACTAACTGACAA-AATTTATGGCAGGACAAGCCACTTACTGACAAAA-TTGATGGCAGGACAGAGCAAC-AACTGACACAATCGGCGACTGGAAAAGATCTTTATTGAC-AAAATAGGTGGCAGGACAAGGCATTTACTGACAAACTTGGCGGCAGAGCAATGCACTAACTGACTTTTTCAGCCAGATAATCATTTTCTGATGTCGCCATTATTCATTC-GATA---------------T-AT-AA-GAAGGTTATGTCATCATAATGAATAATT--CAATATCGACCAAATACGTTCCTGTTTTCCATTTCATTAATGAA-TATGTGGGT---T---------------TGTTGTACTATATATAATTATGTAT-A-T-TT-TTA---TA----ATT---TAT--TA-------TA--C---------ATTAAC----GAGAACCAGATG--TTTA---------A---------A---------TACTGTTAC--CTTTT-GAGCGGTTAACAATGCATTTTGAT-TAAA-TAATAGCGACTATTATCCGCTGGGGATTACAC---CGTATTTTGCGTGAGATAAGATAA---TAAC-TATTATTTA-ATAACT--TGTTAGAAAACTATAAATTCAATAT-GGAACTTGTAAAACACATTGTTAATACCACTT-ACATAGAAGGCCTATAA-AAA--ATATAATAG-ACACTGTTTGTTA-ATTTGCTGACCT-GAAAAAAACAAA--CAAGCGAGTACAAT
gi|10 : cttgTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAAAATTGTTGG------CATTCAATTGG--TGACAG--TACAAGGCACTAACTGATAAAATT-AATGTGAGTTCAATGCACTAACTAACGTAACTg
gi|12 : TTGGTGGCAGGACAAGTCACT---T-ATTTTTTCAGCCAGATAATCATTTACTGACGTCGACATAGCGTATTC-AATATGTA----AATAACTT-ATGAA-GAAGAGTACGTCAATATAATGCATG--C---AATGTCGACCGAATACATTCCTGTTGTCAACATAATGAATGGA-TATGCAGATG--T-A-GGCTGACAGAACTATTTCATCATATACAA-CATGTATAA-A-TT-TTA----A----ATT---CAT--TA-------TG--CACTAAATATGTTATTTCTG
gi|19 : ACTAAATGACAA-AATTGGCGACAGCACTAGACACTTTCTGCCAAAAATTGGTGGCAGGACAAGGCAAA-TATTAACACAATTGGTGGCAGG-AAAGGCCCTCACTGAC---AATTGGTGACAGAACAAG
gi|2 : agtagaTC-GATGTGTATATTAGTGACTTTAT-AAAGAAGATTATGTCACAATAATGAAT---T--AAGTGTCGACTAAAT--GTTCGTGTTGCCGACTTAATTAATGGA-TATGTGGAT---TTA-GACTTTCAAAACTACTTAAC-ATATACAATT-----T-A-A-TT-TCA---TT----ATA---CAC--TA-------TA--C---------GTTATTTTTGGAAAACCATGTGTG---AT-AGCTTAAA---------A----------ACTGTCAC--ATTTTTGAGTGGTTA-----GCATTTTGAT-T-AACTAGTATTGACTATTATCCGCTGGAGA-TACACATTAGTATTAAGCGTGAGATATAATAA---CAACTTATTATCTT-ATAACT--TGCTAGAAAACTTT-A----AATATCAGAACTTGTAAAACACATATCTAATATCACAT-ACATAGCTGGTCTAGAG-AAAC-ATATGATAT-ACTCTCCTTG-TA-AATTGCTTACCT---C----AC-AAT-CAAGCAAATACAATt
gi|23 : -AAAATTGTTGA-AGGAAAATGCACTTACTGACAAAATTGTTGACATGACAAAGCACTAATTGACTTTTTCAACCAttttaaaataaaatgaaataaaaacctcatactaatttctgtcaagttgatgactaaaatgactaggagttatctcatgcttgaaaatgctatttggattttgaaggttgttgtaactctgccctccatgtgatacgagtaataccctcatgtcctaaagcggcatctactctcaagcaacactggatgtattccatgattccaataataacactggaaatacaaaattccaacggccatatgtctgacaacaaacaatcagaacatatgtattaaattctgttatttccagactggg
gi|3 : AGAACACGGCCGTTATGGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATATGTTTAGCCAGATAATCATTTACTGATGCCGACATGATGAATACTGAAATGT
gi|3 : ATGCCGACATGATGAATA--CTGAAATGTCGATCGAATACGTTCCTGT-ATTGACTTAATCAATGGG-TATGTGGATA--T-A-AACCGTCAAAACTATTTCACAATATACAATTATGTAT-ACA-TT-TTGAATTA----ATTATACAC--TA-------TATCC---------GTTATTTCTGGAAAATCAGATTTATTTATCAGCGTGTGACAGTTGAAA---------TACTGTTAC--GTTTT-ACGCTGTTGACATTGCATTTTGAT-G-AA-----AT---TCATTTTGCGTAAGAGATTA------------------------TAAT------AAC-TATTATTT-----------------AAACGTT-A----AATATCGGAACTTGTAAAACACACATCTTTTACCACA------AACGGGTCTATAACAGC--ATATTATATAACCCAACTTG-TACAGTTGCTGATATAA-CAAAAA-------AAGCGATTACAATcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|4 : agaacacggccgttatggacaaaattggtggcaggacaaggcactagctgatatgtttagccagataatcatttactg-AG-GAAGATTATGTCAACATAATGAAT---T--GAATGACGACCAAACA-------------------ATTAATGGA-TTTGTTGGT---T-AAGGCTGGCAGAACTATTTCGCCATATACACTTATGTAT-A-CATT-GTA----A----ATT---TATATTA-------TA--C---------GATATTTCTGGAAA-CCAGATATATTTATCAACGTGTG---------ACAATTCATATACTGTTAC--ATATT-GAGCGGTTAACAATGCATTTTGATGC-AA-AAGTATGGACTTTTAACCGCTGGTGATTACTTGTAAGTATTTTGCATGAGGTATACTAG---TAAC-TTTTATTTA-ATCACT--TGCTAGAAATCTTTAA----AATATCGAGACTTGTAAATC-CCTATCTAATACAACATAATATAACTGGTCTATGA-AAAACATATAATAT-A-ACCTTTTG-TC-AATTTCTAACC--G-CAAAAAC-AA--tgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|5 : CGCCTCTTG-TA-AATTGATAACC-------AGAC-AAATCAAGCGATTAAAATatgatcactattttaaaaaataaaataaaagcaaacccaatacttatttaagttaaatccaaacgaaacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataa
gi|6 : CGCCTCTTG-TA-AATTGATAACCT-G--ACAAAC-----CAAGCGGTTAAAATtaaaaaatgatcattaaaagcgaccctaatactcatttcagttaaattgatgacaagcagtctaggacttgtactcgtgcttgaaaatattatattgatttagaagatagaagtcactctatagcatttcatatgaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataagaaataataataacactggagaggcaaaattttaactgtcttaaatctgacaacggacaatcaaaacatatgtatcactggactcgacggaacggttgtgtaacacttgacgattctgttattcccagactggttacatcccatttgatgacatgtaacttcgaaccaactagacaaaataatttattgcaaagacaaaatgtaact
gi|7 : agaacCAATAGTTGAC-AAATTTGGTGGCACGACAAGGCACTAACCAACTCACTGGGTGTCAAGGCAAGGCAATAACTGACAAAATTGA---------TGGAAAGACAAGGCATTTACTGAAAACAATTGGTGAGAAGACAAAGAAC--------------TAAT---------TGACACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACTAAAATTGGTGAGAGGTCAAAGAACTGATTGACAAAATTGGTGGTAGGACAAGGCATTTACTGAAAACAATTGATGAGAGGACAAAGAACTAATTGACACAA-TTGGTGACATGATAAAG-AACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACAAAAATTGGTGAGAGGTCAAAGtcaaaaataataaataaaagcgacccttatactcctttcagttaaattgatggcaagcagtctaggacttgtcctcgttcttgaaaatattatttggatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagaaagcagagctaattattacactggagaggcaaaattctaactgtgtcaaatctgacaacggacaatcaaaacatatgtatcacttgacgattctgttattcccagactggttacatcccatttgatgacacgtaactttgaaccaactagacaagataacttattgcaaagacaaaatgta
gi|8 : cgtccatgaaattttaccgctgaaaatttagtt-GAAGATGATGTCAATGCAATGAAAG-----AAATGTTGACCGAATACGATCCTGTTGTCGACTTTATAAACAGA-TGTGTAGAT---T-A-GGCTGCCATAACTATTTTAC--TATAC-ATT-TG-AT-A-T-TTATTA---TGCACTATT---T-T--TA-------CA--C---------TTTATTTCTGGGAAACCAGATTTATTTATAAATATGTG---------A---------CAaa
gi|9 : ACTTTATAAAGGGACTATAAGGGTATTT-A-GGCTGGCAGAACTATGTCATCATTTACAAATATGTAT-A-C-TT-TTT---AA----ATC---TAT--TAATGATTCTA--T---------ATTATTTCTGGATAGTCAAATGTAT---C-AACGTGTG---------G---------TA--GTTACCTATTTT-GAACGGTTTACAATACATGTTCA--T-AA-T--TACCCGCTG--GTCCA-TAGAGATTAAACATTAGTGTACTGCCTGAATTAAAATAACGGTACT-TGTAAGTCACATATCTAATACCAGATAATATTAATT--ATTATTGAAATTTgattagatatttcccaaatgttgtgctacacttgtccattctgttatttccagactggttacatgtcgtttgatgccaagtacttttttaaacgaaataacttattatatagaaaaatgtaactactgta
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTAAATTTGATAACCTGACAAATAATGCAATTAAAATTCAAAAATAATAAATAAAAGCGACCTTACTACTCATTTCAGTTCAGTTGATGACAATCAGTTTAGGACTTGTCCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTAGAGTAATTCATATCAAACGTGCAACACTCCTCATATCACTTTGAACCGACTAGATTGCAAAGCAAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|13 ): ATAATAACACTGGAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAGTGGTTGTGTAACACTTTACGATTCTGTTATTCCCAAACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGTAAC
Unaligned ( gi|14 ): TACACTGGAGAGGTAAAATTCTAACTGTCTTTAATCTGACAACGGACAATCAAAACATAATATGTATCTTTTTTTTTCGACAGAACGGTTGTGTAACACTGGACAATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTACACAAGTTAACTTATTGTAAAGACAAAATGTAACT
Unaligned ( gi|15 ): ACTGGATAGGCAAAAGTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACAATTCTGTTATTCCCAGAATGGTTAACATCCAATTTGATGGCATGTGACTTTGAACCGACTAGAAAGATTAACTTATTGAAAAGACAAAATGTAA
Unaligned ( gi|16 ): CTGGAGAGGCAAAATTCTAACTATCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACGATTATGTTATTCCTAGACTGGTTACATCCCATATGATGACATGTAACTTTGAACTGACTAGACAAGTTAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|17 ): AAGATGATAATAATTAAAATACAATTTTACAAATAAAAGATACTTTTTGCAGTTAAATTTATGTCTAAAATTACTAGGATTTTTCTTATTGCTTTGAAGATATTATTTGGATTTTGAAGATTGTTGTAACTCTG
Unaligned ( gi|18 ): AATTGCTGACCTCACAATAAAATCGATTACAGTTTAAGATAATCATAATAAATAAACAGATAATTGTTTCGGTTAAATTGATGATAAACATTACTTTTAGTTGTCCAAGTGCTTGAAAAATATTTGTTTGA
Unaligned ( gi|20 ): GTGGGCGGGCGGGCGGACAGGCAGGCAGGCAGATGCATAATAACTTGTACATTCTGTTATTTCCTGACTAGTTACATGGTATTTGAGGACATATATAATGTGTGTTCCAACTAGACAAGATAACGTAGCGC
Unaligned ( gi|21 ): GTAACACTTGCAATAGAAAATTCATCCATTTTGTTATTTCCAGACTGGCCGCATGCCATTTGAGGACACACTTTGTATCAGCTGGACAAGATAACTTATTACACTGAAGATTGTAAC
Unaligned ( gi|22 ): CAGAGCAGGCGTTATGGACAAAATGGCGGCAACATAGACATGTATATTTAATAACATCAGCCGATACAGAGATAATAAACGCTGAA
Unaligned ( gi|24 ): CGGGCGGGCGGGCGGGCAGGCAGGCAGGCACTACTCACATTATTAAATTGCACATCTTGATA
Alignments
lowQualScore : 1 222 2222 22222 11 11 1 2222 222 11 1 11 222222 11 22222 11111 1 1 333333333 1 1 7777777777777777777777 1 1 1 11 11 1 3333333333333 1 4444444 2222222 1 111 222222222 11111111 222222222222222222222 444444444444444444444444444444 11 1111 2222 2222222 111 11 11 44444 11 1 22 1 4444444444444444
lowQualScore : 22 1 1 1 1 5 1 111 3333 77777 77 1 88 5 4444 1 111 88 1 1 5 1 1 1 1 1 88 999999 333 1 88 22222 1 88888 3 3 1 3 1 1 1 1 1 777777777 1 1 1 1 5 1 1 1 5 2222222222222222222222 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 3 0 1 3 6 77 0 0 7 1 33 8 1 0 444 2 0 1 0 1 0 3 4444444444444 0 8 0000000 2 44 1 3 1 5 1111111 3 1 0 1 5 1 5 222 5 777777777 00000000 777777777777777777777 1 1 3 999999999999999999999999999999 11 8 0 1 5555 2222 8 0 3 0 2222222 666 3 4 1 0 444 8 44 11 11 1 11111 3 3 33 0 1 0 33 1 0 3 1 6 6 0 5555555555555555 1
lowQualScore : .. . . . . . . ... .... ..... .. . .. . .... . ... .. . . . . . . . . .. ...... ... . .. ..... . ..... . . . . . . . . . ......... . . . . . . . . . ...................... . . . . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ... . . . . . . . ............. . . ....... . .. . . . . ....... . . . . . . . ... . ......... ........ ..................... . . . .............................. .. . . . .... .... . . . . ....... ... . . . . ... . .. .. .. . ..... . . .. . . . .. . . . . . . . ................ .
lowQualScore : 00 0 0 0 0 5 0 000 5555 00000 55 0 00 0 0000 0 555 00 0 0 5 0 0 0 0 0 55 000000 000 0 55 00000 0 00000 3 3 0 7 0 0 0 0 0 555555555 0 0 0 0 0 0 0 0 0 5555555555555555555555 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 3 7 0 3 7 00 7 7 3 0 22 8 0 2 222 5 7 0 7 0 0 2 3333333333333 0 0 2222222 5 22 0 0 0 7 9999999 0 7 1 7 0 4 7 444 7 777777777 33333333 999999999999999999999 7 0 2 555555555555555555555555555555 00 0 8 0 6666 8888 2 8 2 8 6666666 000 2 0 4 8 000 0 00 66 00 0 22222 2 2 22 2 0 0 88 2 0 7 0 7 7 3 2222222222222222 0
consensus : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAACT-ATTATTTA-ATAACT--TGCTAGAAAACTTTAA----AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
Reference ( family-501 ) : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAACT-ATTATTTA-ATAACT--TGCTAGAAAACTTTAA---TAATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
gi|1 : TTATCTATAATATGTAGACTTAATTCAACT-GGGAATTGAACATTTTTAAAAG---TATA----TATAATACAA-----CTAACTG--ATAATAGATTTGACAGGATAGAGTGACTAAA----ACAAGTA---GC--GAAAGGCA-CTAACTGACAAAAGTAATTGCCGGAAATGATACTAACTGATAAAATTG--GGAAGGACCAAAAAAGTAGTATGGCAGGTCA-ATG---C--ACTGAC-AAGTT-GGTAGTAGGACAATGCACATATTAACACAAATGGTGGCAGACCAATGCACTAACTGACAAAACTGACGAAATTGGTGGTAGGACAATGCACTGACTGATAA-AATTTGTGGCAGGACCAAAAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGTAGGCCAGTGCACTAGCTGACAAACCTGTTGGCAGTACAAGTCTCTAGCTGAC-ACAACTGGTTAAAAGACAAGGCATAAACTGACAAATTTGGTTGCAAGACAATGCACTAACTGACAA-AATTTATGGCAGGACAAGCCACTTACTGACAAAA-TTGATGGCAGGACAGAGCAAC-AACTGACACAATCGGCGACTGGAAAAGATCTTTATTGAC-AAAATAGGTGGCAGGACAAGGCATTTACTGACAAACTTGGCGGCAGAGCAATGCACTAACTGACTTTTTCAGCCAGATAATCATTTTCTGATGTCGCCATTATTCATTC-GATA---------------T-AT-AA-GAAGGTTATGTCATCATAATGAATAATT--CAATATCGACCAAATACGTTCCTGTTTTCCATTTCATTAATGAA-TATGTGGGT---T---------------TGTTGTACTATATATAATTATGTAT-A-T-TT-TTA---TA----ATT---TAT--TA-------TA--C---------ATTAAC----GAGAACCAGATG--TTTA---------A---------A---------TACTGTTAC--CTTTT-GAGCGGTTAACAATGCATTTTGAT-TAAA-TAATAGCGACTATTATCCGCTGGGGATTACAC---CGTATTTTGCGTGAGATAAGATAA---TAACT-ATTATTTA-ATAACT--TGTTAGAAAACTATAAATTCAATAT-GGAACTTGTAAAACACATTGTTAATACCACTT-ACATAGAAGGCCTATAA-AAA--ATATAATAG-ACACTGTTTGTTA-ATTTGCTGACCT-GAAAAAAACAAA--CAAGCGAGTACAAT
gi|10 : cttgTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAAAATTGTTGG------CATTCAATTGG--TGACAG--TACAAGGCACTAACTGATAAAATT-AATGTGAGTTCAATGCACTAACTAACGTAACTg
gi|12 : TTGGTGGCAGGACAAGTCACT---T-ATTTTTTCAGCCAGATAATCATTTACTGACGTCGACATAGCGTATTC-AATATGTA----AATAACTT-ATGAA-GAAGAGTACGTCAATATAATGCATG--C---AATGTCGACCGAATACATTCCTGTTGTCAACATAATGAATGGA-TATGCAGATG--T-A-GGCTGACAGAACTATTTCATCATATACAA-CATGTATAA-A-TT-TTA----A----ATT---CAT--TA-------TG--CACTAAATATGTTATTTCTG
gi|19 : ACTAAATGACAA-AATTGGCGACAGCACTAGACACTTTCTGCCAAAAATTGGTGGCAGGACAAGGCAAA-TATTAACACAATTGGTGGCAGG-AAAGGCCCTCACTGAC---AATTGGTGACAGAACAAG
gi|2 : agtagaTC-GATGTGTATATTAGTGACTTTAT-AAAGAAGATTATGTCACAATAATGAAT---T--AAGTGTCGACTAAAT--GTTCGTGTTGCCGACTTAATTAATGGA-TATGTGGAT---TTA-GACTTTCAAAACTACTTAAC-ATATACAATT-----T-A-A-TT-TCA---TT----ATA---CAC--TA-------TA--C---------GTTATTTTTGGAAAACCATGTGTG---AT-AGCTTAAA---------A----------ACTGTCAC--ATTTTTGAGTGGTTA-----GCATTTTGAT-T-AACTAGTATTGACTATTATCCGCTGGAGAT-ACACATTAGTATTAAGCGTGAGATATAATAA---CAACTTATTATCTT-ATAACT--TGCTAGAAAACTTTAA-----ATATCAGAACTTGTAAAACACATATCTAATATCACAT-ACATAGCTGGTCTAGAG-AAAC-ATATGATAT-ACTCTCCTTG-TA-AATTGCTTACCT---C----AC-AAT-CAAGCAAATACAATt
gi|23 : -AAAATTGTTGA-AGGAAAATGCACTTACTGACAAAATTGTTGACATGACAAAGCACTAATTGACTTTTTCAACCAttttaaaataaaatgaaataaaaacctcatactaatttctgtcaagttgatgactaaaatgactaggagttatctcatgcttgaaaatgctatttggattttgaaggttgttgtaactctgccctccatgtgatacgagtaataccctcatgtcctaaagcggcatctactctcaagcaacactggatgtattccatgattccaataataacactggaaatacaaaattccaacggccatatgtctgacaacaaacaatcagaacatatgtattaaattctgttatttccagactggg
gi|3 : AGAACACGGCCGTTATGGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATATGTTTAGCCAGATAATCATTTACTGATGCCGACATGATGAATACTGAAATGT
gi|3 : ATGCCGACATGATGAATA--CTGAAATGTCGATCGAATACGTTCCTGT-ATTGACTTAATCAATGGG-TATGTGGATA--T-A-AACCGTCAAAACTATTTCACAATATACAATTATGTAT-ACA-TT-TTGAATTA----ATTATACAC--TA-------TATCC---------GTTATTTCTGGAAAATCAGATTTATTTATCAGCGTGTGACAGTTGAAA---------TACTGTTAC--GTTTT-ACGCTGTTGACATTGCATTTTGAT-G-AA-----AT---TCATTTTGCGTAAGAGATTA------------------------TAAT------AACT-ATTATTT-----------------AAACGTTA-----AATATCGGAACTTGTAAAACACACATCTTTTACCACA------AACGGGTCTATAACAGC--ATATTATATAACCCAACTTG-TACAGTTGCTGATATAA-CAAAAA-------AAGCGATTACAATcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|4 : agaacacggccgttatggacaaaattggtggcaggacaaggcactagctgatatgtttagccagataatcatttactg-AG-GAAGATTATGTCAACATAATGAAT---T--GAATGACGACCAAACA-------------------ATTAATGGA-TTTGTTGGT---T-AAGGCTGGCAGAACTATTTCGCCATATACACTTATGTAT-A-CATT-GTA----A----ATT---TATATTA-------TA--C---------GATATTTCTGGAAA-CCAGATATATTTATCAACGTGTG---------ACAATTCATATACTGTTAC--ATATT-GAGCGGTTAACAATGCATTTTGATGC-AA-AAGTATGGACTTTTAACCGCTGGTGATTACTTGTAAGTATTTTGCATGAGGTATACTAG---TAACT-TTTATTTA-ATCACT--TGCTAGAAATCTTTAA----AATATCGAGACTTGTAAATC-CCTATCTAATACAACATAATATAACTGGTCTATGA-AAAACATATAATAT-A-ACCTTTTG-TC-AATTTCTAACC--G-CAAAAAC-AA--tgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|5 : CGCCTCTTG-TA-AATTGATAACC-------AGAC-AAATCAAGCGATTAAAATatgatcactattttaaaaaataaaataaaagcaaacccaatacttatttaagttaaatccaaacgaaacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataa
gi|6 : CGCCTCTTG-TA-AATTGATAACCT-G--ACAAAC-----CAAGCGGTTAAAATtaaaaaatgatcattaaaagcgaccctaatactcatttcagttaaattgatgacaagcagtctaggacttgtactcgtgcttgaaaatattatattgatttagaagatagaagtcactctatagcatttcatatgaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataagaaataataataacactggagaggcaaaattttaactgtcttaaatctgacaacggacaatcaaaacatatgtatcactggactcgacggaacggttgtgtaacacttgacgattctgttattcccagactggttacatcccatttgatgacatgtaacttcgaaccaactagacaaaataatttattgcaaagacaaaatgtaact
gi|7 : agaacCAATAGTTGAC-AAATTTGGTGGCACGACAAGGCACTAACCAACTCACTGGGTGTCAAGGCAAGGCAATAACTGACA---------AAATTGATGGAAAGACAAGGCATTTACTGAAAACAATTGGTGAGAAGACAAAGAAC-TAAT----------------------TGACACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACTAAAATTGGTGAGAGGTCAAAGAACTGATTGACAAAATTGGTGGTAGGACAAGGCATTTACTGAAAACAATTGATGAGAGGACAAAGAACTAATTGACACAA-TTGGTGACATGATAAAG-AACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACAAAAATTGGTGAGAGGTCAAAGtcaaaaataataaataaaagcgacccttatactcctttcagttaaattgatggcaagcagtctaggacttgtcctcgttcttgaaaatattatttggatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagaaagcagagctaattattacactggagaggcaaaattctaactgtgtcaaatctgacaacggacaatcaaaacatatgtatcacttgacgattctgttattcccagactggttacatcccatttgatgacacgtaactttgaaccaactagacaagataacttattgcaaagacaaaatgta
gi|8 : cgtccatgaaattttaccgctgaaaatttagtt-GAAGATGATGTCAATGCAATGAAAG-----AAATGTTGACCGAATACGATCCTGTTGTCGACTTTATAAACAGA-TGTGTAGAT---T-A-GGCTGCCATAACTATTTTAC--TATAC-ATT-TG-AT-A-T-TTATTA---TGCACTATT---T-T--TA-------CA--C---------TTTATTTCTGGGAAACCAGATTTATTTATAAATATGTG---------A---------CAaa
gi|9 : ACTTTATAAAGGGACTATAAGGGTATTT-A-GGCTGGCAGAACTATGTCATCATTTACAAATATGTAT-A-C-TT-TTT---AA----ATC---TAT--TAATGATTCTA--T---------ATTATTTCTGGATAGTCAAATGTAT---C-AACGTGTG---------G---------TA--GTTACCTATTTT-GAACGGTTTACAATACATGTTCA--T-AA-T--TACCCGCTG--GTCCA-TAGAGATTAAACATTAGTGTACTGCCTGAATTAAAATAACGGTACTT-GTAAGTCACATATCTAATACCAGATAATATTAAT--TATTATTGAAATTTgattagatatttcccaaatgttgtgctacacttgtccattctgttatttccagactggttacatgtcgtttgatgccaagtacttttttaaacgaaataacttattatatagaaaaatgtaactactgta
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTAAATTTGATAACCTGACAAATAATGCAATTAAAATTCAAAAATAATAAATAAAAGCGACCTTACTACTCATTTCAGTTCAGTTGATGACAATCAGTTTAGGACTTGTCCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTAGAGTAATTCATATCAAACGTGCAACACTCCTCATATCACTTTGAACCGACTAGATTGCAAAGCAAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|13 ): ATAATAACACTGGAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAGTGGTTGTGTAACACTTTACGATTCTGTTATTCCCAAACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGTAAC
Unaligned ( gi|14 ): TACACTGGAGAGGTAAAATTCTAACTGTCTTTAATCTGACAACGGACAATCAAAACATAATATGTATCTTTTTTTTTCGACAGAACGGTTGTGTAACACTGGACAATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTACACAAGTTAACTTATTGTAAAGACAAAATGTAACT
Unaligned ( gi|15 ): ACTGGATAGGCAAAAGTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACAATTCTGTTATTCCCAGAATGGTTAACATCCAATTTGATGGCATGTGACTTTGAACCGACTAGAAAGATTAACTTATTGAAAAGACAAAATGTAA
Unaligned ( gi|16 ): CTGGAGAGGCAAAATTCTAACTATCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACGATTATGTTATTCCTAGACTGGTTACATCCCATATGATGACATGTAACTTTGAACTGACTAGACAAGTTAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|17 ): AAGATGATAATAATTAAAATACAATTTTACAAATAAAAGATACTTTTTGCAGTTAAATTTATGTCTAAAATTACTAGGATTTTTCTTATTGCTTTGAAGATATTATTTGGATTTTGAAGATTGTTGTAACTCTG
Unaligned ( gi|18 ): AATTGCTGACCTCACAATAAAATCGATTACAGTTTAAGATAATCATAATAAATAAACAGATAATTGTTTCGGTTAAATTGATGATAAACATTACTTTTAGTTGTCCAAGTGCTTGAAAAATATTTGTTTGA
Unaligned ( gi|20 ): GTGGGCGGGCGGGCGGACAGGCAGGCAGGCAGATGCATAATAACTTGTACATTCTGTTATTTCCTGACTAGTTACATGGTATTTGAGGACATATATAATGTGTGTTCCAACTAGACAAGATAACGTAGCGC
Unaligned ( gi|21 ): GTAACACTTGCAATAGAAAATTCATCCATTTTGTTATTTCCAGACTGGCCGCATGCCATTTGAGGACACACTTTGTATCAGCTGGACAAGATAACTTATTACACTGAAGATTGTAAC
Unaligned ( gi|22 ): CAGAGCAGGCGTTATGGACAAAATGGCGGCAACATAGACATGTATATTTAATAACATCAGCCGATACAGAGATAATAAACGCTGAA
Unaligned ( gi|24 ): CGGGCGGGCGGGCGGGCAGGCAGGCAGGCACTACTCACATTATTAAATTGCACATCTTGATA
Alignments
lowQualScore : 1 222 2222 22222 11 11 1 2222 222 11 1 11 222222 11 22222 11111 1 1 333333333 1 555555555555555555555555555 1 1 1 11 11 1 3333333333333 1 4444444 2222222 1 111 222222222 11111111 222222222222222222222 444444444444444444444444444444 11 1111 2222 2222222 111 11 11 222222 11 1 22 1 4444444444444444
lowQualScore : 22 1 1 1 1 5 1 111 3333 77777 77 1 88 5 4444 1 111 88 1 1 5 1 1 1 1 1 88 999999 333 1 88 22222 1 88888 3 3 1 3 1 1 1 1 1 777777777 1 1 1 1 5 1 1 1 888888888888888888888888888 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 3 0 1 3 6 77 0 0 7 1 33 8 1 0 444 2 0 1 0 1 0 3 4444444444444 0 8 0000000 2 44 1 3 1 5 1111111 3 1 0 1 5 1 5 222 5 777777777 00000000 777777777777777777777 1 1 3 999999999999999999999999999999 11 8 0 1 5555 2222 8 0 3 0 2222222 666 3 4 1 0 444 8 44 11 11 1 999999 3 3 33 0 1 0 33 1 0 3 1 6 6 0 5555555555555555 1
lowQualScore : .. . . . . . . ... .... ..... .. . .. . .... . ... .. . . . . . . . . .. ...... ... . .. ..... . ..... . . . . . . . . . ......... . . . . . . . . ........................... . . . . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ... . . . . . . . ............. . . ....... . .. . . . . ....... . . . . . . . ... . ......... ........ ..................... . . . .............................. .. . . . .... .... . . . . ....... ... . . . . ... . .. .. .. . ...... . . .. . . . .. . . . . . . . ................ .
lowQualScore : 00 0 0 0 0 5 0 000 5555 00000 55 0 00 0 0000 0 555 00 0 0 5 0 0 0 0 0 55 000000 000 0 55 00000 0 00000 3 3 0 7 0 0 0 0 0 555555555 0 0 0 0 0 0 0 0 555555555555555555555555555 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 3 7 0 3 7 00 7 7 3 0 22 8 0 2 222 5 7 0 7 0 0 2 3333333333333 0 0 2222222 5 22 0 0 0 7 9999999 0 7 1 7 0 4 7 444 7 777777777 33333333 999999999999999999999 7 0 2 555555555555555555555555555555 00 0 8 0 6666 8888 2 8 2 8 6666666 000 2 0 4 8 000 0 00 66 00 0 666666 2 2 22 2 0 0 88 2 0 7 0 7 7 3 2222222222222222 0
consensus : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAAC-TATTATTTA-ATAACT--TGCTAGAAAACTTTAA-T--AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
Reference ( family-501 ) : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAAC-TATTATTTA-ATAACT--TGCTAGAAAACTTTAA----AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
gi|1 : TTATCTATAATATGTAGACTTAATTCAACT-GGGAATTGAACATTTTTAAAAG---TATA----TATAATACAA-----CTAACTG--ATAATAGATTTGACAGGATAGAGTGACTAAA----ACAAGTA---GC--GAAAGGCA-CTAACTGACAAAAGTAATTGCCGGAAATGATACTAACTGATAAAATTG--GGAAGGACCAAAAAAGTAGTATGGCAGGTCA-ATG---C--ACTGAC-AAGTT-GGTAGTAGGACAATGCACATATTAACACAAATGGTGGCAGACCAATGCACTAACTGACAAAACTGACGAAATTGGTGGTAGGACAATGCACTGACTGATAA-AATTTGTGGCAGGACCAAAAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGTAGGCCAGTGCACTAGCTGACAAACCTGTTGGCAGTACAAGTCTCTAGCTGAC-ACAACTGGTTAAAAGACAAGGCATAAACTGACAAATTTGGTTGCAAGACAATGCACTAACTGACAA-AATTTATGGCAGGACAAGCCACTTACTGACAAAA-TTGATGGCAGGACAGAGCAAC-AACTGACACAATCGGCGACTGGAAAAGATCTTTATTGAC-AAAATAGGTGGCAGGACAAGGCATTTACTGACAAACTTGGCGGCAGAGCAATGCACTAACTGACTTTTTCAGCCAGATAATCATTTTCTGATGTCGCCATTATTCATTC-GATA---------------T-AT-AA-GAAGGTTATGTCATCATAATGAATAATT--CAATATCGACCAAATACGTTCCTGTTTTCCATTTCATTAATGAA-TATGTGGGT---T---------------TGTTGTACTATATATAATTATGTAT-A-T-TT-TTA---TA----ATT---TAT--TA-------TA--C---------ATTAAC----GAGAACCAGATG--TTTA---------A---------A---------TACTGTTAC--CTTTT-GAGCGGTTAACAATGCATTTTGAT-TAAA-TAATAGCGACTATTATCCGCTGGGGATTACAC---CGTATTTTGCGTGAGATAAGATAA---TAAC-TATTATTTA-ATAACT--TGTTAGAAAACTATAAATTCAATAT-GGAACTTGTAAAACACATTGTTAATACCACTT-ACATAGAAGGCCTATAA-AAA--ATATAATAG-ACACTGTTTGTTA-ATTTGCTGACCT-GAAAAAAACAAA--CAAGCGAGTACAAT
gi|10 : cttgTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAAAATTGTTGG------CATTCAATTGG--TGACAG--TACAAGGCACTAACTGATAAAATT-AATGTGAGTTCAATGCACTAACTAACGTAACTg
gi|12 : TTGGTGGCAGGACAAGTCACT---T-ATTTTTTCAGCCAGATAATCATTTACTGACGTCGACATAGCGTATTC-AATATGTA----AATAACTT-ATGAA-GAAGAGTACGTCAATATAATGCATG--C---AATGTCGACCGAATACATTCCTGTTGTCAACATAATGAATGGA-TATGCAGATG--T-A-GGCTGACAGAACTATTTCATCATATACAA-CATGTATAA-A-TT-TTA----A----ATT---CAT--TA-------TG--CACTAAATATGTTATTTCTG
gi|19 : ACTAAATGACAA-AATTGGCGACAGCACTAGACACTTTCTGCCAAAAATTGGTGGCAGGACAAGGCAAA-TATTAACACAATTGGTGGCAGG-AAAGGCCCTCACTGAC---AATTGGTGACAGAACAAG
gi|2 : agtagaTC-GATGTGTATATTAGTGACTTTAT-AAAGAAGATTATGTCACAATAATGAAT---T--AAGTGTCGACTAAAT--GTTCGTGTTGCCGACTTAATTAATGGA-TATGTGGAT---TTA-GACTTTCAAAACTACTTAAC-ATATACAATT-----T-A-A-TT-TCA---TT----ATA---CAC--TA-------TA--C---------GTTATTTTTGGAAAACCATGTGTG---AT-AGCTTAAA---------A----------ACTGTCAC--ATTTTTGAGTGGTTA-----GCATTTTGAT-T-AACTAGTATTGACTATTATCCGCTGGAGA-TACACATTAGTATTAAGCGTGAGATATAATAA---CAACTTATTATCTT-ATAACT--TGCTAGAAAACTTT-A----AATATCAGAACTTGTAAAACACATATCTAATATCACAT-ACATAGCTGGTCTAGAG-AAAC-ATATGATAT-ACTCTCCTTG-TA-AATTGCTTACCT---C----AC-AAT-CAAGCAAATACAATt
gi|23 : -AAAATTGTTGA-AGGAAAATGCACTTACTGACAAAATTGTTGACATGACAAAGCACTAATTGACTTTTTCAACCAttttaaaataaaatgaaataaaaacctcatactaatttctgtcaagttgatgactaaaatgactaggagttatctcatgcttgaaaatgctatttggattttgaaggttgttgtaactctgccctccatgtgatacgagtaataccctcatgtcctaaagcggcatctactctcaagcaacactggatgtattccatgattccaataataacactggaaatacaaaattccaacggccatatgtctgacaacaaacaatcagaacatatgtattaaattctgttatttccagactggg
gi|3 : AGAACACGGCCGTTATGGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATATGTTTAGCCAGATAATCATTTACTGATGCCGACATGATGAATACTGAAATGT
gi|3 : ATGCCGACATGATGAATA--CTGAAATGTCGATCGAATACGTTCCTGT-ATTGACTTAATCAATGGG-TATGTGGATA--T-A-AACCGTCAAAACTATTTCACAATATACAATTATGTAT-ACA-TT-TTGAATTA----ATTATACAC--TA-------TATCC---------GTTATTTCTGGAAAATCAGATTTATTTATCAGCGTGTGACAGTTGAAA---------TACTGTTAC--GTTTT-ACGCTGTTGACATTGCATTTTGAT-G-AA-----AT---TCATTTTGCGTAAGAGATTA------------------------TAAT------AAC-TATTATTT-----------------AAACGTT-A----AATATCGGAACTTGTAAAACACACATCTTTTACCACA------AACGGGTCTATAACAGC--ATATTATATAACCCAACTTG-TACAGTTGCTGATATAA-CAAAAA-------AAGCGATTACAATcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|4 : agaacacggccgttatggacaaaattggtggcaggacaaggcactagctgatatgtttagccagataatcatttactg-AG-GAAGATTATGTCAACATAATGAAT---T--GAATGACGACCAAACA-------------------ATTAATGGA-TTTGTTGGT---T-AAGGCTGGCAGAACTATTTCGCCATATACACTTATGTAT-A-CATT-GTA----A----ATT---TATATTA-------TA--C---------GATATTTCTGGAAA-CCAGATATATTTATCAACGTGTG---------ACAATTCATATACTGTTAC--ATATT-GAGCGGTTAACAATGCATTTTGATGC-AA-AAGTATGGACTTTTAACCGCTGGTGATTACTTGTAAGTATTTTGCATGAGGTATACTAG---TAAC-TTTTATTTA-ATCACT--TGCTAGAAATCTTTAA----AATATCGAGACTTGTAAATC-CCTATCTAATACAACATAATATAACTGGTCTATGA-AAAACATATAATAT-A-ACCTTTTG-TC-AATTTCTAACC--G-CAAAAAC-AA--tgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|5 : CGCCTCTTG-TA-AATTGATAACC-------AGAC-AAATCAAGCGATTAAAATatgatcactattttaaaaaataaaataaaagcaaacccaatacttatttaagttaaatccaaacgaaacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataa
gi|6 : CGCCTCTTG-TA-AATTGATAACCT-G--ACAAAC-----CAAGCGGTTAAAATtaaaaaatgatcattaaaagcgaccctaatactcatttcagttaaattgatgacaagcagtctaggacttgtactcgtgcttgaaaatattatattgatttagaagatagaagtcactctatagcatttcatatgaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataagaaataataataacactggagaggcaaaattttaactgtcttaaatctgacaacggacaatcaaaacatatgtatcactggactcgacggaacggttgtgtaacacttgacgattctgttattcccagactggttacatcccatttgatgacatgtaacttcgaaccaactagacaaaataatttattgcaaagacaaaatgtaact
gi|7 : agaacCAATAGTTGAC-AAATTTGGTGGCACGACAAGGCACTAACCAACTCACTGGGTGTCAAGGCAAGGCAATAACTGACAAAATTGA---------TGGAAAGACAAGGCATTTACTGAAAACAATTGGTGAGAAGACAAAGAAC--------------TAAT---------TGACACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACTAAAATTGGTGAGAGGTCAAAGAACTGATTGACAAAATTGGTGGTAGGACAAGGCATTTACTGAAAACAATTGATGAGAGGACAAAGAACTAATTGACACAA-TTGGTGACATGATAAAG-AACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACAAAAATTGGTGAGAGGTCAAAGtcaaaaataataaataaaagcgacccttatactcctttcagttaaattgatggcaagcagtctaggacttgtcctcgttcttgaaaatattatttggatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagaaagcagagctaattattacactggagaggcaaaattctaactgtgtcaaatctgacaacggacaatcaaaacatatgtatcacttgacgattctgttattcccagactggttacatcccatttgatgacacgtaactttgaaccaactagacaagataacttattgcaaagacaaaatgta
gi|8 : cgtccatgaaattttaccgctgaaaatttagtt-GAAGATGATGTCAATGCAATGAAAG-----AAATGTTGACCGAATACGATCCTGTTGTCGACTTTATAAACAGA-TGTGTAGAT---T-A-GGCTGCCATAACTATTTTAC--TATAC-ATT-TG-AT-A-T-TTATTA---TGCACTATT---T-T--TA-------CA--C---------TTTATTTCTGGGAAACCAGATTTATTTATAAATATGTG---------A---------CAaa
gi|9 : ACTTTATAAAGGGACTATAAGGGTATTT-A-GGCTGGCAGAACTATGTCATCATTTACAAATATGTAT-A-C-TT-TTT---AA----ATC---TAT--TAATGATTCTA--T---------ATTATTTCTGGATAGTCAAATGTAT---C-AACGTGTG---------G---------TA--GTTACCTATTTT-GAACGGTTTACAATACATGTTCA--T-AA-T--TACCCGCTG--GTCCA-TAGAGATTAAACATTAGTGTACTGCCTGAATTAAAATAACGGTACT-TGTAAGTCACATATCTAATACCAGATAATATTAATT--ATTATTGAAATTTgattagatatttcccaaatgttgtgctacacttgtccattctgttatttccagactggttacatgtcgtttgatgccaagtacttttttaaacgaaataacttattatatagaaaaatgtaactactgta
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTAAATTTGATAACCTGACAAATAATGCAATTAAAATTCAAAAATAATAAATAAAAGCGACCTTACTACTCATTTCAGTTCAGTTGATGACAATCAGTTTAGGACTTGTCCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTAGAGTAATTCATATCAAACGTGCAACACTCCTCATATCACTTTGAACCGACTAGATTGCAAAGCAAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|13 ): ATAATAACACTGGAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAGTGGTTGTGTAACACTTTACGATTCTGTTATTCCCAAACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGTAAC
Unaligned ( gi|14 ): TACACTGGAGAGGTAAAATTCTAACTGTCTTTAATCTGACAACGGACAATCAAAACATAATATGTATCTTTTTTTTTCGACAGAACGGTTGTGTAACACTGGACAATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTACACAAGTTAACTTATTGTAAAGACAAAATGTAACT
Unaligned ( gi|15 ): ACTGGATAGGCAAAAGTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACAATTCTGTTATTCCCAGAATGGTTAACATCCAATTTGATGGCATGTGACTTTGAACCGACTAGAAAGATTAACTTATTGAAAAGACAAAATGTAA
Unaligned ( gi|16 ): CTGGAGAGGCAAAATTCTAACTATCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACGATTATGTTATTCCTAGACTGGTTACATCCCATATGATGACATGTAACTTTGAACTGACTAGACAAGTTAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|17 ): AAGATGATAATAATTAAAATACAATTTTACAAATAAAAGATACTTTTTGCAGTTAAATTTATGTCTAAAATTACTAGGATTTTTCTTATTGCTTTGAAGATATTATTTGGATTTTGAAGATTGTTGTAACTCTG
Unaligned ( gi|18 ): AATTGCTGACCTCACAATAAAATCGATTACAGTTTAAGATAATCATAATAAATAAACAGATAATTGTTTCGGTTAAATTGATGATAAACATTACTTTTAGTTGTCCAAGTGCTTGAAAAATATTTGTTTGA
Unaligned ( gi|20 ): GTGGGCGGGCGGGCGGACAGGCAGGCAGGCAGATGCATAATAACTTGTACATTCTGTTATTTCCTGACTAGTTACATGGTATTTGAGGACATATATAATGTGTGTTCCAACTAGACAAGATAACGTAGCGC
Unaligned ( gi|21 ): GTAACACTTGCAATAGAAAATTCATCCATTTTGTTATTTCCAGACTGGCCGCATGCCATTTGAGGACACACTTTGTATCAGCTGGACAAGATAACTTATTACACTGAAGATTGTAAC
Unaligned ( gi|22 ): CAGAGCAGGCGTTATGGACAAAATGGCGGCAACATAGACATGTATATTTAATAACATCAGCCGATACAGAGATAATAAACGCTGAA
Unaligned ( gi|24 ): CGGGCGGGCGGGCGGGCAGGCAGGCAGGCACTACTCACATTATTAAATTGCACATCTTGATA
Alignments
lowQualScore : 1 222 2222 22222 11 11 1 2222 222 11 1 11 222222 11 22222 11111 1 1 333333333 1 1 7777777777777777777777 1 1 1 11 11 1 3333333333333 1 4444444 2222222 1 111 222222222 11111111 222222222222222222222 444444444444444444444444444444 11 1111 2222 2222222 111 11 11 44444 11 1 22 1 4444444444444444
lowQualScore : 22 1 1 1 1 5 1 111 3333 77777 77 1 88 5 4444 1 111 88 1 1 5 1 1 1 1 1 88 999999 333 1 88 22222 1 88888 3 3 1 3 1 1 1 1 1 777777777 1 1 1 1 5 1 1 1 5 2222222222222222222222 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 3 0 1 3 6 77 0 0 7 1 33 8 1 0 444 2 0 1 0 1 0 3 4444444444444 0 8 0000000 2 44 1 3 1 5 1111111 3 1 0 1 5 1 5 222 5 777777777 00000000 777777777777777777777 1 1 3 999999999999999999999999999999 11 8 0 1 5555 2222 8 0 3 0 2222222 666 3 4 1 0 444 8 44 11 11 1 11111 3 3 33 0 1 0 33 1 0 3 1 6 6 0 5555555555555555 1
lowQualScore : .. . . . . . . ... .... ..... .. . .. . .... . ... .. . . . . . . . . .. ...... ... . .. ..... . ..... . . . . . . . . . ......... . . . . . . . . . ...................... . . . . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ... . . . . . . . ............. . . ....... . .. . . . . ....... . . . . . . . ... . ......... ........ ..................... . . . .............................. .. . . . .... .... . . . . ....... ... . . . . ... . .. .. .. . ..... . . .. . . . .. . . . . . . . ................ .
lowQualScore : 00 0 0 0 0 5 0 000 5555 00000 55 0 00 0 0000 0 555 00 0 0 5 0 0 0 0 0 55 000000 000 0 55 00000 0 00000 3 3 0 7 0 0 0 0 0 555555555 0 0 0 0 0 0 0 0 0 5555555555555555555555 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 3 7 0 3 7 00 7 7 3 0 22 8 0 2 222 5 7 0 7 0 0 2 3333333333333 0 0 2222222 5 22 0 0 0 7 9999999 0 7 1 7 0 4 7 444 7 777777777 33333333 999999999999999999999 7 0 2 555555555555555555555555555555 00 0 8 0 6666 8888 2 8 2 8 6666666 000 2 0 4 8 000 0 00 66 00 0 22222 2 2 22 2 0 0 88 2 0 7 0 7 7 3 2222222222222222 0
consensus : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAACT-ATTATTTA-ATAACT--TGCTAGAAAACTTTAA----AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
Reference ( family-501 ) : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAACT-ATTATTTA-ATAACT--TGCTAGAAAACTTTAA---TAATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
gi|1 : TTATCTATAATATGTAGACTTAATTCAACT-GGGAATTGAACATTTTTAAAAG---TATA----TATAATACAA-----CTAACTG--ATAATAGATTTGACAGGATAGAGTGACTAAA----ACAAGTA---GC--GAAAGGCA-CTAACTGACAAAAGTAATTGCCGGAAATGATACTAACTGATAAAATTG--GGAAGGACCAAAAAAGTAGTATGGCAGGTCA-ATG---C--ACTGAC-AAGTT-GGTAGTAGGACAATGCACATATTAACACAAATGGTGGCAGACCAATGCACTAACTGACAAAACTGACGAAATTGGTGGTAGGACAATGCACTGACTGATAA-AATTTGTGGCAGGACCAAAAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGTAGGCCAGTGCACTAGCTGACAAACCTGTTGGCAGTACAAGTCTCTAGCTGAC-ACAACTGGTTAAAAGACAAGGCATAAACTGACAAATTTGGTTGCAAGACAATGCACTAACTGACAA-AATTTATGGCAGGACAAGCCACTTACTGACAAAA-TTGATGGCAGGACAGAGCAAC-AACTGACACAATCGGCGACTGGAAAAGATCTTTATTGAC-AAAATAGGTGGCAGGACAAGGCATTTACTGACAAACTTGGCGGCAGAGCAATGCACTAACTGACTTTTTCAGCCAGATAATCATTTTCTGATGTCGCCATTATTCATTC-GATA---------------T-AT-AA-GAAGGTTATGTCATCATAATGAATAATT--CAATATCGACCAAATACGTTCCTGTTTTCCATTTCATTAATGAA-TATGTGGGT---T---------------TGTTGTACTATATATAATTATGTAT-A-T-TT-TTA---TA----ATT---TAT--TA-------TA--C---------ATTAAC----GAGAACCAGATG--TTTA---------A---------A---------TACTGTTAC--CTTTT-GAGCGGTTAACAATGCATTTTGAT-TAAA-TAATAGCGACTATTATCCGCTGGGGATTACAC---CGTATTTTGCGTGAGATAAGATAA---TAACT-ATTATTTA-ATAACT--TGTTAGAAAACTATAAATTCAATAT-GGAACTTGTAAAACACATTGTTAATACCACTT-ACATAGAAGGCCTATAA-AAA--ATATAATAG-ACACTGTTTGTTA-ATTTGCTGACCT-GAAAAAAACAAA--CAAGCGAGTACAAT
gi|10 : cttgTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAAAATTGTTGG------CATTCAATTGG--TGACAG--TACAAGGCACTAACTGATAAAATT-AATGTGAGTTCAATGCACTAACTAACGTAACTg
gi|12 : TTGGTGGCAGGACAAGTCACT---T-ATTTTTTCAGCCAGATAATCATTTACTGACGTCGACATAGCGTATTC-AATATGTA----AATAACTT-ATGAA-GAAGAGTACGTCAATATAATGCATG--C---AATGTCGACCGAATACATTCCTGTTGTCAACATAATGAATGGA-TATGCAGATG--T-A-GGCTGACAGAACTATTTCATCATATACAA-CATGTATAA-A-TT-TTA----A----ATT---CAT--TA-------TG--CACTAAATATGTTATTTCTG
gi|19 : ACTAAATGACAA-AATTGGCGACAGCACTAGACACTTTCTGCCAAAAATTGGTGGCAGGACAAGGCAAA-TATTAACACAATTGGTGGCAGG-AAAGGCCCTCACTGAC---AATTGGTGACAGAACAAG
gi|2 : agtagaTC-GATGTGTATATTAGTGACTTTAT-AAAGAAGATTATGTCACAATAATGAAT---T--AAGTGTCGACTAAAT--GTTCGTGTTGCCGACTTAATTAATGGA-TATGTGGAT---TTA-GACTTTCAAAACTACTTAAC-ATATACAATT-----T-A-A-TT-TCA---TT----ATA---CAC--TA-------TA--C---------GTTATTTTTGGAAAACCATGTGTG---AT-AGCTTAAA---------A----------ACTGTCAC--ATTTTTGAGTGGTTA-----GCATTTTGAT-T-AACTAGTATTGACTATTATCCGCTGGAGAT-ACACATTAGTATTAAGCGTGAGATATAATAA---CAACTTATTATCTT-ATAACT--TGCTAGAAAACTTTAA-----ATATCAGAACTTGTAAAACACATATCTAATATCACAT-ACATAGCTGGTCTAGAG-AAAC-ATATGATAT-ACTCTCCTTG-TA-AATTGCTTACCT---C----AC-AAT-CAAGCAAATACAATt
gi|23 : -AAAATTGTTGA-AGGAAAATGCACTTACTGACAAAATTGTTGACATGACAAAGCACTAATTGACTTTTTCAACCAttttaaaataaaatgaaataaaaacctcatactaatttctgtcaagttgatgactaaaatgactaggagttatctcatgcttgaaaatgctatttggattttgaaggttgttgtaactctgccctccatgtgatacgagtaataccctcatgtcctaaagcggcatctactctcaagcaacactggatgtattccatgattccaataataacactggaaatacaaaattccaacggccatatgtctgacaacaaacaatcagaacatatgtattaaattctgttatttccagactggg
gi|3 : AGAACACGGCCGTTATGGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATATGTTTAGCCAGATAATCATTTACTGATGCCGACATGATGAATACTGAAATGT
gi|3 : ATGCCGACATGATGAATA--CTGAAATGTCGATCGAATACGTTCCTGT-ATTGACTTAATCAATGGG-TATGTGGATA--T-A-AACCGTCAAAACTATTTCACAATATACAATTATGTAT-ACA-TT-TTGAATTA----ATTATACAC--TA-------TATCC---------GTTATTTCTGGAAAATCAGATTTATTTATCAGCGTGTGACAGTTGAAA---------TACTGTTAC--GTTTT-ACGCTGTTGACATTGCATTTTGAT-G-AA-----AT---TCATTTTGCGTAAGAGATTA------------------------TAAT------AACT-ATTATTT-----------------AAACGTTA-----AATATCGGAACTTGTAAAACACACATCTTTTACCACA------AACGGGTCTATAACAGC--ATATTATATAACCCAACTTG-TACAGTTGCTGATATAA-CAAAAA-------AAGCGATTACAATcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|4 : agaacacggccgttatggacaaaattggtggcaggacaaggcactagctgatatgtttagccagataatcatttactg-AG-GAAGATTATGTCAACATAATGAAT---T--GAATGACGACCAAACA-------------------ATTAATGGA-TTTGTTGGT---T-AAGGCTGGCAGAACTATTTCGCCATATACACTTATGTAT-A-CATT-GTA----A----ATT---TATATTA-------TA--C---------GATATTTCTGGAAA-CCAGATATATTTATCAACGTGTG---------ACAATTCATATACTGTTAC--ATATT-GAGCGGTTAACAATGCATTTTGATGC-AA-AAGTATGGACTTTTAACCGCTGGTGATTACTTGTAAGTATTTTGCATGAGGTATACTAG---TAACT-TTTATTTA-ATCACT--TGCTAGAAATCTTTAA----AATATCGAGACTTGTAAATC-CCTATCTAATACAACATAATATAACTGGTCTATGA-AAAACATATAATAT-A-ACCTTTTG-TC-AATTTCTAACC--G-CAAAAAC-AA--tgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|5 : CGCCTCTTG-TA-AATTGATAACC-------AGAC-AAATCAAGCGATTAAAATatgatcactattttaaaaaataaaataaaagcaaacccaatacttatttaagttaaatccaaacgaaacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataa
gi|6 : CGCCTCTTG-TA-AATTGATAACCT-G--ACAAAC-----CAAGCGGTTAAAATtaaaaaatgatcattaaaagcgaccctaatactcatttcagttaaattgatgacaagcagtctaggacttgtactcgtgcttgaaaatattatattgatttagaagatagaagtcactctatagcatttcatatgaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataagaaataataataacactggagaggcaaaattttaactgtcttaaatctgacaacggacaatcaaaacatatgtatcactggactcgacggaacggttgtgtaacacttgacgattctgttattcccagactggttacatcccatttgatgacatgtaacttcgaaccaactagacaaaataatttattgcaaagacaaaatgtaact
gi|7 : agaacCAATAGTTGAC-AAATTTGGTGGCACGACAAGGCACTAACCAACTCACTGGGTGTCAAGGCAAGGCAATAACTGACA---------AAATTGATGGAAAGACAAGGCATTTACTGAAAACAATTGGTGAGAAGACAAAGAAC-TAAT----------------------TGACACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACTAAAATTGGTGAGAGGTCAAAGAACTGATTGACAAAATTGGTGGTAGGACAAGGCATTTACTGAAAACAATTGATGAGAGGACAAAGAACTAATTGACACAA-TTGGTGACATGATAAAG-AACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACAAAAATTGGTGAGAGGTCAAAGtcaaaaataataaataaaagcgacccttatactcctttcagttaaattgatggcaagcagtctaggacttgtcctcgttcttgaaaatattatttggatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagaaagcagagctaattattacactggagaggcaaaattctaactgtgtcaaatctgacaacggacaatcaaaacatatgtatcacttgacgattctgttattcccagactggttacatcccatttgatgacacgtaactttgaaccaactagacaagataacttattgcaaagacaaaatgta
gi|8 : cgtccatgaaattttaccgctgaaaatttagtt-GAAGATGATGTCAATGCAATGAAAG-----AAATGTTGACCGAATACGATCCTGTTGTCGACTTTATAAACAGA-TGTGTAGAT---T-A-GGCTGCCATAACTATTTTAC--TATAC-ATT-TG-AT-A-T-TTATTA---TGCACTATT---T-T--TA-------CA--C---------TTTATTTCTGGGAAACCAGATTTATTTATAAATATGTG---------A---------CAaa
gi|9 : ACTTTATAAAGGGACTATAAGGGTATTT-A-GGCTGGCAGAACTATGTCATCATTTACAAATATGTAT-A-C-TT-TTT---AA----ATC---TAT--TAATGATTCTA--T---------ATTATTTCTGGATAGTCAAATGTAT---C-AACGTGTG---------G---------TA--GTTACCTATTTT-GAACGGTTTACAATACATGTTCA--T-AA-T--TACCCGCTG--GTCCA-TAGAGATTAAACATTAGTGTACTGCCTGAATTAAAATAACGGTACTT-GTAAGTCACATATCTAATACCAGATAATATTAAT--TATTATTGAAATTTgattagatatttcccaaatgttgtgctacacttgtccattctgttatttccagactggttacatgtcgtttgatgccaagtacttttttaaacgaaataacttattatatagaaaaatgtaactactgta
blockSeqs : AT T T A C A C CAA CATG ATAAG GC T . . TAAC T ATT AG C G T C A A A C TT . TTC T . TAC A GCACT A T G G C T G G A . A G T A C G G A . . T A A A A G T G A T A G T A T A G G C A A C TG A C AA C C AAT G A T T T TATTAGTGACTTT G A ACTGA C TG A A G C ATTTA A G C T A T A CA A TGCACT ATACAC TGCACTAAATAT A G T TCAGCGTGTGACAGTTGAAAT CT T T TGC CTAG T C CACATTA TAA G A T CGG T AC AA AA T ATT C A TA T C AC G A T C . C GCAAAAACAA A
blockSeqs : . . C T T . G . . T . A A G G AGC G G A . T AATAACTT . . GC C TG G A T . GTA T A A T A T . CA . AATTA TATAT ATGATTCTAT A T T TCAACGTGTGACAATTCATAT . . A TT AAG G T CTTGTAA TTT A G T . . T CA . G A C A T G . C T . C A . . TAACAAAAA T
blockSeqs : . . . . . T . . TA C TG G A C . TTA T A C T A T . A . TT CAT TATCC A A T TAAATATGTGAC . . A TG T C C AACATTA ACT C T T . . A AT . T A C . . T . . A . A T . . AGACAAAT T
blockSeqs : . TG . A G T T . ATA G G C T A T . A . AA CAC TAC G T . CAACGTGTGGT . . . T . . . . . . . A . . . . . A . T G T . . TGACAAAC T
blockSeqs : GA . . . T A . TAA C T . A . . . T . A TAT TAC . G . TAGCTTAAAA G T . . TCACAAT
blockSeqs : . A . TA G G . . . . . C . A TT CAC
blockSeqCons : NA***** NTA**** TCAACGTGTGACAGCTAAAT********** T*** CG** CACGTTA A**** NNACAAAT********
originalCons : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATG--T--AAATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGT---T-A-GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTAT-AACGTGTG---------A---------TACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT-T-AA-TAGTATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAACT-ATTATTTA-ATAACT--TGCTAGAAAACTTTAA----AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCT-G-CAAAAAC-AA--CAAGCGATTACAAT
finalCons : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATNA-----AATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGTNTA----GGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTATCAACGTGTGACAGCTAAAT----------ACTGTTAC--ATTTT-GAGCGGTTAACAATGCATTTTGAT---AACG--TATCGACTATTATCCGCTGGAGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAACT-ATTATTTA-ATAACT--TGCTAGAAAACTTTAA----AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACCNNACAAAT--------CAAGCGATTACAAT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTAAATTTGATAACCTGACAAATAATGCAATTAAAATTCAAAAATAATAAATAAAAGCGACCTTACTACTCATTTCAGTTCAGTTGATGACAATCAGTTTAGGACTTGTCCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTAGAGTAATTCATATCAAACGTGCAACACTCCTCATATCACTTTGAACCGACTAGATTGCAAAGCAAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|13 ): ATAATAACACTGGAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAGTGGTTGTGTAACACTTTACGATTCTGTTATTCCCAAACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGTAAC
Unaligned ( gi|14 ): TACACTGGAGAGGTAAAATTCTAACTGTCTTTAATCTGACAACGGACAATCAAAACATAATATGTATCTTTTTTTTTCGACAGAACGGTTGTGTAACACTGGACAATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTACACAAGTTAACTTATTGTAAAGACAAAATGTAACT
Unaligned ( gi|15 ): ACTGGATAGGCAAAAGTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACAATTCTGTTATTCCCAGAATGGTTAACATCCAATTTGATGGCATGTGACTTTGAACCGACTAGAAAGATTAACTTATTGAAAAGACAAAATGTAA
Unaligned ( gi|16 ): CTGGAGAGGCAAAATTCTAACTATCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACGATTATGTTATTCCTAGACTGGTTACATCCCATATGATGACATGTAACTTTGAACTGACTAGACAAGTTAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|17 ): AAGATGATAATAATTAAAATACAATTTTACAAATAAAAGATACTTTTTGCAGTTAAATTTATGTCTAAAATTACTAGGATTTTTCTTATTGCTTTGAAGATATTATTTGGATTTTGAAGATTGTTGTAACTCTG
Unaligned ( gi|18 ): AATTGCTGACCTCACAATAAAATCGATTACAGTTTAAGATAATCATAATAAATAAACAGATAATTGTTTCGGTTAAATTGATGATAAACATTACTTTTAGTTGTCCAAGTGCTTGAAAAATATTTGTTTGA
Unaligned ( gi|20 ): GTGGGCGGGCGGGCGGACAGGCAGGCAGGCAGATGCATAATAACTTGTACATTCTGTTATTTCCTGACTAGTTACATGGTATTTGAGGACATATATAATGTGTGTTCCAACTAGACAAGATAACGTAGCGC
Unaligned ( gi|21 ): GTAACACTTGCAATAGAAAATTCATCCATTTTGTTATTTCCAGACTGGCCGCATGCCATTTGAGGACACACTTTGTATCAGCTGGACAAGATAACTTATTACACTGAAGATTGTAAC
Unaligned ( gi|22 ): CAGAGCAGGCGTTATGGACAAAATGGCGGCAACATAGACATGTATATTTAATAACATCAGCCGATACAGAGATAATAAACGCTGAA
Unaligned ( gi|24 ): CGGGCGGGCGGGCGGGCAGGCAGGCAGGCACTACTCACATTATTAAATTGCACATCTTGATA
Alignments
lowQualScore : 1 222 2222 22222 11 11 1 2222 222 11 1 11 222222 11 22222 11111 1 1 333333333 1 555555555555555555555555555 1 1 1 11 11 1 4444444444444 1 22222222 1 111 222222222 11111111 222222222222222222222 22222 333333333 111 11 55555555555555 2222222 1111 111 11 11 222222 11 1 22 1 22222222 1
lowQualScore : 22 1 1 1 1 5 1 111 3333 77777 77 1 88 5 4444 1 111 88 1 1 5 1 1 1 1 1 88 999999 333 1 88 22222 1 88888 3 3 1 3 1 1 1 1 1 777777777 1 1 1 1 5 1 1 1 888888888888888888888888888 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 1 3 0 1 3 6 77 0 0 7 1 33 8 1 0 444 2 0 1 0 1 0 2 2222222222222 0 8 11111111 2 44 1 3 1 5 9999 1 1 0 1 5 1 5 222 5 777777777 00000000 777777777777777777777 1 1 11111 333 333333333 000 55 3 99999999999999 2 6 1111111 99 1 8888 666 3 4 1 0 444 8 44 11 11 1 999999 3 3 33 0 1 0 33 1 0 3 1 6 6 0 11111111 4
lowQualScore : .. . . . . . . ... .... ..... .. . .. . .... . ... .. . . . . . . . . .. ...... ... . .. ..... . ..... . . . . . . . . . ......... . . . . . . . . ........................... . . . . . . . . . . . . . . . . . . . . . . . .. . . . . .. . . . ... . . . . . . . ............. . . ........ . .. . . . . .... . . . . . . . ... . ......... ........ ..................... . . ..... ... ......... ... .. . .............. . . ....... .. . .... ... . . . . ... . .. .. .. . ...... . . .. . . . .. . . . . . . . ........ .
lowQualScore : 00 0 0 0 0 5 0 000 5555 00000 55 0 00 0 0000 0 555 00 0 0 5 0 0 0 0 0 55 000000 000 0 55 00000 0 00000 3 3 0 7 0 0 0 0 0 555555555 0 0 0 0 0 0 0 0 555555555555555555555555555 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 3 7 0 3 7 00 7 7 3 0 22 8 0 2 222 5 7 0 7 0 0 5 3333333333333 0 0 88888888 5 22 0 0 0 7 1111 0 7 1 7 0 4 7 444 7 777777777 33333333 999999999999999999999 7 0 55555 000 333333333 777 88 2 88888888888888 2 7 7777777 22 0 4444 000 2 0 4 8 000 0 00 66 00 0 666666 2 2 22 2 0 0 88 2 0 7 0 7 7 3 22222222 2
consensus : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATN---A---AATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGTNT--AGGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATNTATTTATCAACGTGTGACAG-TT-AA--ATACTGTTAC--ATTTT--GAGCGGTTAACAATGCATTTTGAT---AAC--GTATCGACTATTANCCG-CTG-------G--AGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAAC-TATTATTTA-ATAACT--TGCTAGAAAACTTTAA-T--AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACC------NNACAAA-CAAGCGATTACAAT
Reference ( family-501 ) : NNNNTTATCNNTAATATNTANACNTANTTCAACTAGGGGATTGAACNTTTTCAAAAGCAATATACATGTATGATACAAATAAGCTAACTGGCATAATNGGTTTGACAGGACAGGGCGACTAAATAACACAANTAATTGCAGGANAGGNATCTAACTGACAAAGNTGATNGCNGGAAANGGCACTNACTGACAAAATTGTTGGAAGGACCANNNAANTGGTATGGCAGGTCACANGGCACTAACTGAC-AAATT-GGTGGNAGGACAATGCACTAACTAACGCAANTGGTGNCAGGNCAANGCANTAACTGACAAAACTGACGAAATTGGTGGNAGGACAANGCACTNACTGANAACAATTNGTGGNAGGACNAAGAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGCANGNCAGNGNACTGGCTGACAGANCTGNTNGCAGNACAGGNCCCTAGCTGACTANAACTGGTNAGAGGNCAAGGNACNGACTGACAAANTTGGTNGCAGGACAANGCACTAACTGACAA-AATTGACGACAGGACAAGNCACTTACTGACAAAA-TTGGTGGCAGGACAAAGCAAC-GACTGACACAATCGGCGACAGGAAAAGACCTTNACTGAC-AAAATTGGTGACAGGACAAGGCANTTACTGACAAAATTGGTGGCAGGACAAGGCACTAACTGACTTTTTCAGCCAGATAATCATTTACTGACGTCGACATNACGNATTC-GATATGTA----AGTGACTT-AT-AA-GAAGATTATGTCAACATAATGAATN---A---AATGTCGACCGAATACGTTCCTGTTGTCGACTTNATNAATGGA-TATGTGGGTNT--AGGCTGNCAGAACTATTTCACCATATACAATTATGTAT-A-N-TT-TTA---TA----ATT---CAT--TA-------TA--C---------GTTATTTCTGGAAAACCAGATGTATTTATCAACGTGTGACAG-CT-AA--ATACTGTTAC--ATTTT--GAGCGGTTAACAATGCATTTTGAT---AAC--GTATCGACTATTATCCG-CTG-------G--AGATTACACGTTAGTATTTTGCGTGAGATATAATAA---TAAC-TATTATTTA-ATAACT--TGCTAGAAAACTTTAA----AATATCGGAACTTGTAAAACACATATCTAATACCACAT-ACATAGCNGGTCTATAA-AAA--ATATAATAT-ACGCCNCTTG-TA-AATTGCTAACC------NNACAAATCAAGCGATTACAAT
gi|1 : TTATCTATAATATGTAGACTTAATTCAACT-GGGAATTGAACATTTTTAAAAG---TATA----TATAATACAA-----CTAACTG--ATAATAGATTTGACAGGATAGAGTGACTAAA----ACAAGTA---GC--GAAAGGCA-CTAACTGACAAAAGTAATTGCCGGAAATGATACTAACTGATAAAATTG--GGAAGGACCAAAAAAGTAGTATGGCAGGTCA-ATG---C--ACTGAC-AAGTT-GGTAGTAGGACAATGCACATATTAACACAAATGGTGGCAGACCAATGCACTAACTGACAAAACTGACGAAATTGGTGGTAGGACAATGCACTGACTGATAA-AATTTGTGGCAGGACCAAAAACGTAGTATGGCAGGTCAATGCGCTGACACGACACAATTGGTGGTAGGCCAGTGCACTAGCTGACAAACCTGTTGGCAGTACAAGTCTCTAGCTGAC-ACAACTGGTTAAAAGACAAGGCATAAACTGACAAATTTGGTTGCAAGACAATGCACTAACTGACAA-AATTTATGGCAGGACAAGCCACTTACTGACAAAA-TTGATGGCAGGACAGAGCAAC-AACTGACACAATCGGCGACTGGAAAAGATCTTTATTGAC-AAAATAGGTGGCAGGACAAGGCATTTACTGACAAACTTGGCGGCAGAGCAATGCACTAACTGACTTTTTCAGCCAGATAATCATTTTCTGATGTCGCCATTATTCATTC-GATAT----------------AT-AA-GAAGGTTATGTCATCATAATGAATA---ATTCAATATCGACCAAATACGTTCCTGTTTTCCATTTCATTAATGAA-TATGTGGGTTT----GTTGT------------ACTATATATAATTATGTAT-A-T-TT-TTA---TA----ATT---TAT--TA-------TA--C---------ATTAAC----GAGAACCAGATGT--------------------TT-AA--ATACTGTTAC--CTTTT--GAGCGGTTAACAATGCATTTTGATTA-AATA-ATAGCGACTATTATCCG-CTG-------G--GGATTACAC---CGTATTTTGCGTGAGATAAGATAA---TAAC-TATTATTTA-ATAACT--TGTTAGAAAACTATAAATTCAATAT-GGAACTTGTAAAACACATTGTTAATACCACTT-ACATAGAAGGCCTATAA-AAA--ATATAATAG-ACACTGTTTGTTA-ATTTGCTGACCTGAAAAAAACAAA-CAAGCGAGTACAAT
gi|10 : cttgTTATCATTAATATTTATACATACTTCAACTAGGGGATTGAACCTTTTCAAAAACAATATACATGTATGATATAAATAAGTTAACTGGCATAATTAGTT--ACAGAACAAGGC-ACTAAATAACACAATTAATTGCAGGACAGGGATCTAACTGACAAAGCTGATAGCAGAAAAAGGCACTCACTGACAAAATTGTTGG------CATTCAATTGG--TGACAG--TACAAGGCACTAACTGATAAAATT-AATGTGAGTTCAATGCACTAACTAACGTAACTg
gi|12 : TTGGTGGCAGGACAAGTCACT---T-ATTTTTTCAGCCAGATAATCATTTACTGACGTCGACATAGCGTATTC-AATATGTA----AATAACTT-ATGAA-GAAGAGTACGTCAATATAATGCATG---C---AATGTCGACCGAATACATTCCTGTTGTCAACATAATGAATGGA-TATGCAGATGT--AGGCTGACAGAACTATTTCATCATATACAA-CATGTATAA-A-TT-TTA----A----ATT---CAT--TA-------TG--CACTAAATATGTTATTTCTG
gi|15 : GTGTAACAC-TT-GACAATTCTGTTA----TTCCCAGAATGGTTAAC-ATCCAATTTGAT---GGC--ATGT-GACTTTGAACCGACTA-------GAAAGATTA
gi|19 : actggataggcaaaagtctaactgtcttaaatctgacaacggacaatcaaaacataatatgtatcacttgttttcgacggaacggttACTAAATGACAA-AATTGGCGACAGCACTAGACACTTTCTGCCAAAAATTGGTGGCAGGACAAGGCAAA-TATTAACACAATTGGTGGCAGG-AAAGGCCCTCACTGAC---AATTGGTGACAGAACAAGacttattgaaaagacaaaatgtaa
gi|2 : agtagaTC-GATGTGTATATTAGTGACTTTAT-AAAGAAGATTATGTCACAATAATGAATT---A---AGTGTCGACTAAAT--GTTCGTGTTGCCGACTTAATTAATGGA-TATGTGGATTT--AGACTTTCAAAACTACTTAAC-ATATACAATT-----T-A-A-TT-TCA---TT----ATA---CAC--TA-------TA--C---------GTTATTTTTGGAAAACCA--------------TGTGTGATAG-CTTAA--AAACTGTCAC--ATTTTT-GAGTGGTTA-----GCATTTTGATT--AACTAGTATTGACTATTATCCG-CTG-------G--AGAT-ACACATTAGTATTAAGCGTGAGATATAATAA---CAACTTATTATCTT-ATAACT--TGCTAGAAAACTTT-A----AATATCAGAACTTGTAAAACACATATCTAATATCACAT-ACATAGCTGGTCTAGAG-AAAC-ATATGATAT-ACTCTCCTTG-TA-AATTGCTTACC------TCAC-AATCAAGCAAATACAATt
gi|23 : -AAAATTGTTGA-AGGAAAATGCACTTACTGACAAAATTGTTGACATGACAAAGCACTAATTGACTTTTTCAACCAttttaaaataaaatgaaataaaaacctcatactaatttctgtcaagttgatgactaaaatgactaggagttatctcatgcttgaaaatgctatttggattttgaaggttgttgtaactctgccctccatgtgatacgagtaataccctcatgtcctaaagcggcatctactctcaagcaacactggatgtattccatgattccaataataacactggaaatacaaaattccaacggccatatgtctgacaacaaacaatcagaacatatgtattaaattctgttatttccagactggg
gi|3 : AGAACACGGCCGTTATGGACAAAATTGGTGGCAGGACAAGGCACTAGCTGATATGTTTAGCCAGATAATCATTTACTGATGCCGACATGATGAATACTGAAATGT
gi|3 : ATGCCGACATGATGAATACTGA---AATGTCGATCGAATACGTTCCTGT-ATTGACTTAATCAATGGG-TATGTGGATAT--AAACCGTCAAAACTATTTCACAATATACAATTATGTAT-ACA-TT-TTGAATTA----ATTATACAC--TA-------TATCC---------GTTATTTCTGGAAAATCAGATTTATTTATCAGCGTGTGACAG-TTGAA--ATACTGTTAC--GTTTT--ACGCTGTTGACATTGCATTTTGAT---GAA--AT-TC----ATTTTGCG-TAA-------G--AGATT------------------------ATAAT------AAC-TATTATTT-----------------AAACGTT-A----AATATCGGAACTTGTAAAACACACATCTTTTACCACA------AACGGGTCTATAACAGC--ATATTATATAACCCAACTTG-TACAGTTGCTGATA------TAACAAAAAAAGCGATTACAATcgatcgaatacgttcctgtattgacttaatcaatgggtatgtggatataaaccgtcaaaactatttcacaatatacaattatgtatacattttgaattaattatacactatatccgttatttctggaaaatcagatttatttatcagcgtgtgacagttgaaatactgttacgttttacgctgttgacattgcattttgatgaaattcattttgcgtaagagattataataactattatttaaacgttaaatatcggaacttgtaaaacacacatcttttaccacaaacgggtctataacagcatattatataacccaacttgtacagttgctgatataacaaaaaaagcgattacaattgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|4 : agaacacggccgttatggacaaaattggtggcaggacaaggcactagctgatatgtttagccagataatcatttactg-AG-GAAGATTATGTCAACATAATGAATT---G---AATGACGACCAAACA-------------------ATTAATGGA-TTTGTTGGTTA--AGGCTGGCAGAACTATTTCGCCATATACACTTATGTAT-A-CATT-GTA----A----ATT---TATATTA-------TA--C---------GATATTTCTGGAAA-CCAGATATATTTATCAACGTGTGACAA-TT-CAT-ATACTGTTAC--ATATT--GAGCGGTTAACAATGCATTTTGATGCAAAA--GTATGGACTTTTAACCG-CTG-------G--TGATTACTTGTAAGTATTTTGCATGAGGTATACTAG---TAAC-TTTTATTTA-ATCACT--TGCTAGAAATCTTTAA----AATATCGAGACTTGTAAATC-CCTATCTAATACAACATAATATAACTGGTCTATGA-AAAACATATAATAT-A-ACCTTTTG-TC-AATTTCTAACC------GCAAAAA-CAAATGATCACTATtgaaaatatgataaaataaaaacctgatatttattttagttaaattggtgactaacaaatgctctagtgtttgaaaatattatttggagtttgaaggacgttgtcactctgccctgcatttgaaacatacaacgatcctcacgtctactagcaccggcttaagctgcatctaacactgggtgggttctatgagtccaatattaacataaataa
gi|5 : CGCCTCTTG-TA-AATTGATAACC------AGACAAATCAAGCGATTAAAATtttaaaaaataaaataaaagcaaacccaatacttatttaagttaaatccaaacgaaacaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaataa
gi|6 : CGCCTCTTG-TA-AATTGATAACC------TGACAAACCAAGCGGTTAAAATtaaaaaatgatcattaaaagcgaccctaatactcatttcagttaaattgatgacaagcagtctaggacttgtactcgtgcttgaaaatattatattgatttagaagatagaagtcactctatagcatttcatatgaaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaataagaaataataataacactggagaggcaaaattttaactgtcttaaatctgacaacggacaatcaaaacatatgtatcactggactcgacggaacggttgtgtaacacttgacgattctgttattcccagactggttacatcccatttgatgacatgtaacttcgaaccaactagacaaaataatttattgcaaagacaaaatgtaact
gi|7 : agaacCAATAGTTGAC-AAATTTGGTGGCACGACAAGGCACTAACCAACTCACTGGGTGTCAAGGCAAGGCAATAACTGACAAAATTGA---------TGGAAAGACAAGGCATTTACTGAAAACAATTGGTGAGAAGACAAAGAAC--------------TAAT---------TGACACAATTGGTGACATGATAAAGAACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACTAAAATTGGTGAGAGGTCAAAGAACTGATTGACAAAATTGGTGGTAGGACAAGGCATTTACTGAAAACAATTGATGAGAGGACAAAGAACTAATTGACACAA-TTGGTGACATGATAAAG-AACTGACTGACAGAATTGGTTACAGGACAGGACCTTAACTGACAAAAATTGGTGAGAGGTCAAAGtcaaaaataataaataaaagcgacccttatactcctttcagttaaattgatggcaagcagtctaggacttgtcctcgttcttgaaaatattatttggatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcagaaagcagagctaattattacactggagaggcaaaattctaactgtgtcaaatctgacaacggacaatcaaaacatatgtatcacttgacgattctgttattcccagactggttacatcccatttgatgacacgtaactttgaaccaactagacaagataacttattgcaaagacaaaatgta
gi|8 : cgtccatgaaattttaccgctgaaaatttagtt-GAAGATGATGTCAATGCAATGAAAG---A---AATGTTGACCGAATACGATCCTGTTGTCGACTTTATAAACAGA-TGTGTAGAT-T--AGGCTGCCATAACTATTTTAC--TATAC-ATT-TG-AT-A-T-TTATTA---TGCACTATT---T-T--TA-------CA--C---------TTTATTTCTGGGAAACCAGATTTATTTATAAATATGTGACAGATT-AG--ATATTaa
gi|9 : ACTTTATAAAGGGACTATAAGGGTATTTAGGCTGGCAGAACTATGTCATCATTTACAAATATGTAT-A-C-TT-TTT---AA----ATC---TAT--TAATGATTCTA--T---------ATTATTTCTGGATAGTCAAATG----TATCAACGTGTGGTA--------------GTTACCTATTTT--GAACGGTTTACAATACATGTTCAT---A-------------ATTACCCG-CTGGTCCATAG--AGATTAAACATTAGTGTACTGCCTGAATTAAAATAACGGTACT-TGTAAGTCACATATCTAATACCAGATAATATTAATT--ATTATTGAAATTTtcccaaatgttgtgctacacttgtccattctgttatttccagactggttacatgtcgtttgatgccaagtacttttttaaacgaaataacttattatatagaaaaatgtaactactgta
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTAAATTTGATAACCTGACAAATAATGCAATTAAAATTCAAAAATAATAAATAAAAGCGACCTTACTACTCATTTCAGTTCAGTTGATGACAATCAGTTTAGGACTTGTCCTCGTGCTTGAAAATATTATTTGGATTTAGAAGGAAGTAGTCACTCTAGAGTAATTCATATCAAACGTGCAACACTCCTCATATCACTTTGAACCGACTAGATTGCAAAGCAAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|13 ): ATAATAACACTGGAGAGGCAAAATTCTAACTGTCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAGTGGTTGTGTAACACTTTACGATTCTGTTATTCCCAAACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTAGACAAGATAACTTATTGCAAAGACAAAATGTAAC
Unaligned ( gi|14 ): TACACTGGAGAGGTAAAATTCTAACTGTCTTTAATCTGACAACGGACAATCAAAACATAATATGTATCTTTTTTTTTCGACAGAACGGTTGTGTAACACTGGACAATTCTGTTATTCCCAGACTGGTTACATCCCATTTGATGACATGTAACTTTGAACCGACTACACAAGTTAACTTATTGTAAAGACAAAATGTAACT
Unaligned ( gi|16 ): CTGGAGAGGCAAAATTCTAACTATCTTAAATCTGACAACGGACAATCAAAACATAATATGTATCACTTGTTTTCGACGGAACGGTTGTGTAACACTTGACGATTATGTTATTCCTAGACTGGTTACATCCCATATGATGACATGTAACTTTGAACTGACTAGACAAGTTAACTTATTGCAAAGACAAAATGTAACT
Unaligned ( gi|17 ): AAGATGATAATAATTAAAATACAATTTTACAAATAAAAGATACTTTTTGCAGTTAAATTTATGTCTAAAATTACTAGGATTTTTCTTATTGCTTTGAAGATATTATTTGGATTTTGAAGATTGTTGTAACTCTG
Unaligned ( gi|18 ): AATTGCTGACCTCACAATAAAATCGATTACAGTTTAAGATAATCATAATAAATAAACAGATAATTGTTTCGGTTAAATTGATGATAAACATTACTTTTAGTTGTCCAAGTGCTTGAAAAATATTTGTTTGA
Unaligned ( gi|20 ): GTGGGCGGGCGGGCGGACAGGCAGGCAGGCAGATGCATAATAACTTGTACATTCTGTTATTTCCTGACTAGTTACATGGTATTTGAGGACATATATAATGTGTGTTCCAACTAGACAAGATAACGTAGCGC
Unaligned ( gi|21 ): GTAACACTTGCAATAGAAAATTCATCCATTTTGTTATTTCCAGACTGGCCGCATGCCATTTGAGGACACACTTTGTATCAGCTGGACAAGATAACTTATTACACTGAAGATTGTAAC
Unaligned ( gi|22 ): CAGAGCAGGCGTTATGGACAAAATGGCGGCAACATAGACATGTATATTTAATAACATCAGCCGATACAGAGATAATAAACGCTGAA
Unaligned ( gi|24 ): CGGGCGGGCGGGCGGGCAGGCAGGCAGGCACTACTCACATTATTAAATTGCACATCTTGATA