lowQualScore : 111111111111111111111111111
lowQualScore : 333333333333333333333333333 1 44 11 1 111 333333333333 22 11 11 1 1 1 11 111 22 1 1 22 1 1 1
lowQualScore : 444444444444444444444444444 6 7 6 6 6 44 9 4 0 0 22 0 6 6 111 6 66 5 111111111111 00 2 777 5 1 22 33 7 2 8 0 5 0 5 8 77 6 6 99 0 8 8 11 111 8 11 6 6 5 6 1 5 22 8 6 5 1 6 6
lowQualScore : ........................... . . . . . .. . . . . .. . . . ... . .. . ............ .. . ... . . .. .. . . . . . . . . .. . . .. . . . .. ... . .. . . . . . . .. . . . . . .
lowQualScore : 000000000000000000000000000 0 0 0 0 0 33 0 2 2 2 22 0 0 0 777 7 00 7 999999999999 77 4 888 3 7 22 99 0 5 1 0 0 2 7 7 11 7 7 22 8 0 0 00 777 2 22 0 6 0 6 4 0 88 0 0 0 0 0 0
consensus : NAATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAATTTATTTAGTTTAAATATATTTTANNNNNNNNNNNNNNNNNNNATATTTATAT--AACATACGCAAATGGATTGAACTA-CAAGTTAT-AACAACATTAGTTACAGTTCCCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCA---TAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCT-GTTGCCCATCACAATAGAAACCAAACAATCGCCCCACATACTGTTCAA-TTT-AAAATTTCGACAGCCACGCGTAACATACTT
Reference ( gi|1 ) : GAATTAGTTTCACAGAA---TGATATTTAACATTGGATATGTTTAGTTTAAACATGTTTTATGACTTCGCACGAAAATACATATTTATATGAAAAATACGCAAATGGATTGAACTA-TAAGTTAT-AATAACATTGGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCTTGTATACCGGAATGAAATGTAATTACATCCA---TAATATAGATTA--ATTCGAAATGAATACTCGAAACTTG-A-AAAGAAGAAAC-ACACATAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTATCCG-GTTGCTCATCTCACTAGAAACCATACAATCGCCCCAAATACTGTTCAA-ATT-AAAA-TTCGACAGCCCCGCATGACACACTT
gi|5 : AATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAATTTATTTAGTTTAAATATATTTTA
gi|6 : ATATTTACATATGAAATAAGGAAATGGATATAACTACTAACTTAA-AACAACATTAGTTACAGCTCTCTCCAATTTAA-CT-TTAATATTGATAT-A---------T-TGGTTTATCGGAATGAAATTAAAAAATATTTA---TAATATAAGTGA--ATTTGAAAAGAATAATAGAAACTTG-A-AA-----TAAC-ACACA-AAACGGT-GAA-AA--Accatgtttgttacatatatcaacataataaacagatgcatataaaatgataacaaatatataacatatacaaatggattgaactacaagttataacaacattagttacagttccctccaatgtggcggtataaatgtacatgtttccagggttgaaa
gi|9 : TTATAT--AACGTATGCAAATGTAATGAACTA-CAAGTTAT-A
gi|5 : taaatttatatagtgttcaaacatattctataacatatgtaacaatatagagacatataaaattaacaacagtgacgtgataacaaaTATAT--AACATATACAAATGGATTGAACTA-CAAGTTAT-AACAACATTAGTTACAGTTCCCTCCA----ATGTG-GCGGTATAAATGT-A----------CATGTTTCCAGGGTTGAAAcc
gi|14 : aattttttaagaagtttaaaattatgttgaatttatttagtttaaatatattttaccatgtttgttacatatatcaacataataaacagatgcatataaaatgataacaaaAACACACATAAATGGATTACACTA-CATGTAATTAACAACATTAGTTACAGTTC
gi|2 : ac---TAT-TA-TCAATATCAATAT-AAAAAAAATATCATGTATACCGGAATGAAATGTAAAAACATTCA---TAATATAGGTTATCATTTTAAATGAATACTAGGAACGTG-A-AAAGAAGAAAC-ACACAGAAAT-GT-GGACAA--AAAT-GAGAGAGTTGGGGA---TCCCCGCTTGATAAACTCACCCT-GTTGCCCATCTCAATAGAAACCATACATTCGCCCCACTTACTGTTCAA-TTT-AAAATTTCGACAACCACGTGTAACATACTgc
gi|4 : ---TAT-CACTTAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCA---TATTATAGGTTA--ATTTTAAATGAATACTATAAACTTG-A-TAAGAAGAAAC-ACACAGAAAT-GT-GAA-CA--AAATGGA-AGGG--GGGAAATTTCCCCGCTTGATAAACTTACCCT-GTTGCCCATCTCAATAGAAACCATACATTCGCCCCACATTATGTTAAA-GTT-AAAA-TT
gi|3 : ---TAT-CA-CCAACATCAATAT-A---------TTATGTATACCGGAATTAAATGTAATAACATTCA---TAACGAAGGTTATAATTTTAAATGAATACCATAAACTTG-A-AAAGAAAAAAT-ACACAGAAAT-GT-GAA-AAAAAAAT-GA-AGGA--CGAAA---TCCCCGCTTGATAAACTTACCCT-ATTGCCCATCATAACAGAAACCAAACAATCGCCCCACATATTGTTCAA-TTTAAAAA-CTCGACAGCCACGCTTAACATACTTat
gi|8 : ---TAT-CA-ACAATATCAATATCA---------TTACATATACTGGAATTAAATGTAATAACATTTA---TAATATAGCTGA--ATTTTAAAAGAGTAATAGAATCTTGAA-AAAGAAGAATC-ACGCATAAAT-GCGGAA-AA--AAAT-GA-AGGA--GAGt
gi|7 : -TCAATATTAAAGT-A---------TTATGTATACCGAAATTAAATGTAA----AACCGTTTTAA-ATAGACTG--AT------------CT--AAATTTT-A-AAATTATAAACTGCAGAGAAAC-GT-GAA-AT--AA---GA-A-AG--GGGAA---CCCCAGCTTGATAA
gi|12 : ct---------TTTTGTATACCTGGATTAAATATTTTAACATTCA---TGATATAGGTGA--ATTTGAAAAGAATAATAGAAACCTGAA-AAAGAAATAAC-ACTCA-AAAT-Gtcatgtcatttcgtcaatctctat
gi|15 : CCGGAATGAAATGTAATAAAATTCA---TAATATAGGTTA--ATT
gi|13 : GAATGAAACATAACAACTTCTA---CAATATAGGTGA--ATTCCAAAAGAAAAATAGCAACTTG-AGAAAGAAGAttaa
gi|10 : atatctatc---TCCTCGCTTGATAAACTTGCCCT-GTTGCCCATCACAATATAAACCAAACAATCGCCCCACATACTGTTCAATTTT-AAAT-TTCGACAACCACGCGTATCATACTT
gi|11 : ---TCCCCGCTTGATTAA-TTAACCATGTTGCCCATCATAATAGAAACCAAACAATCGCCCCACATACTGTTCAA-TTT-AAAATTTCGACAGTCACGCCTAACATACTTt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TCTTTGTGTGAATGTATATGTTTACCGGGTTGATAAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 2 222 22 55555555555555555555555555555555555555555555555555555555555555555555555 111 11111 111 222222222 11 111
lowQualScore : 77 0 111 4 77 88888888888888888888888888888888888888888888888888888888888888888888888 777 33333 1 8 8 0 000 5 5 5 000000000 0 0 11 4 2 2 8 4 5 4 5 5 5 77 6 6 99 000 4 4 3 3
lowQualScore : .. . ... . .. ....................................................................... ... ..... . . . . ... . . . ......... . . .. . . . . . . . . . . .. . . .. ... . . . .
lowQualScore : 55 0 000 0 55 55555555555555555555555555555555555555555555555555555555555555555555555 555 00000 4 0 0 7 000 7 0 0 000000000 3 6 00 6 6 6 9 4 0 5 7 7 7 99 7 7 22 000 0 0 5 2
consensus : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGTNTGAATATATTTTACCATGTTTGTTANACATGTCAACATAATANGNNNNCGCACGNAAANNNATATT---TATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
Reference ( family-495 ) : NAATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAAT---------TTA-------TTTA----GTTT---AAATATATT----T--TANNNNNNNNNNNNNNNNNNNATATT---TATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCCCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCACAATAGAAACCAAACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
gi|1 : AATTAGTTTCACAGAA---TGATATTTAACATTGGAT---------ATG-------TTTA----GTTT---AAACATGTT----T--TATGACTTCGCACGAAAATACATATT---TATATGAA--AAATACGCAAATGGATTGAACTAT-AAGTTAT-AATAACATTGGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCTTGTATACCGGAATGAAATGTAATTACATCCATAATATAGATTA--ATTCGAAATGAATACTCGAAACTTG-A-AAAGAAGAAAC-ACACATAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTATCCGGTTGCTCATCTCACTAGAAACCATACAATCGCCCCAAATACTGTTCAAATTAAAA-TTCGACAGCCCCGCATGACACACTT
gi|10 : g---TCCTCGCTTGATAAACTTGCCCTGTTGCCCATCACAATATAAACCAAACAATCGCCCCACATACTGTTCAATTTTAAATTTCGACAACCACGCGTATCATACTT
gi|11 : ---TCCCCGCTTGATTAATTAACCATGTTGCCCATCATAATAGAAACCAAACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGTCACGCCTAACATACTTt
gi|12 : TGTATACCTGGATTAAATATTTTAACATTCATGATATAGGTGA--ATTTGAAAAGAATAATAGAAACCTGAA-AAAGAAATAAC-ACTCAAAA
gi|13 : tttATATCTATCG-AATGAAACATAACAACTTCTACAATATAGGTGA--ATTCCAAAAGAAAAATAGCAACTTG-AGAAAGAAGAtg
gi|14 : AC--A--ACACACATAAATGGATTACACTAC-ATGTAATTAACAACATTAGTTACAGTTC
gi|15 : CCGGAATGAAATGTAATAAAATTCATAATATAGGTTA--ATTTTAAgc
gi|2 : ---TAT-TA-TCAATATCAATAT-AAAAAAAATATCATGTATACCGGAATGAAATGTAAAAACATTCATAATATAGGTTATCATTTTAAATGAATACTAGGAACGTG-A-AAAGAAGAAAC-ACACAGAAAT-GT-GGACAA--AAAT-GAGAGAGTTGGGGA---TCCCCGCTTGATAAACTCACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACTTACTGTTCAATTTAAAATTTCGACAACCACGTGTAACATACT
gi|3 : ---TAT-CA-CCAACATCAATAT-A---------TTATGTATACCGGAATTAAATGTAATAACATTCATAACGAAGGTTATAATTTTAAATGAATACCATAAACTTG-A-AAAGAAAAAAT-ACACAGAAAT-GT-GAA-AAAAAAAT-GA-AGGA--CGAAA---TCCCCGCTTGATAAACTTACCCTATTGCCCATCATAACAGAAACCAAACAATCGCCCCACATATTGTTCAATTTAAAAACTCGACAGCCACGCTTAACATACTT
gi|4 : ---TAT-CACTTAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATATTATAGGTTA--ATTTTAAATGAATACTATAAACTTG-A-TAAGAAGAAAC-ACACAGAAAT-GT-GAA-CA--AAATGGA-AGGG--GGGAAATTTCCCCGCTTGATAAACTTACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACATTATGTTAAAGTTAAAATTt
gi|5 : AATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAATTTATTTAGTTTAAATATATTTTACCATGTTTGTTACATATATCAACATAATAAACAGATGCATATAAAATGATAACAAATATAT--A--ACATATACAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCCCTCCA----ATGTG-GCGGTATAAATGT-A----------CATGTTTCCAGGGTTGAAAat
gi|6 : ATATT---TACAT--ATGAAATAAGGAAATGGATATAACTACTAACTTAA-AACAACATTAGTTACAGCTCTCTCCAATTTAA-CT-TTAATATTGATAT-A---------TTG-GTTTATCGGAATGAAATTAAAAAATATTTATAATATAAGTGA--ATTTGAAAAGAATAATAGAAACTTG-A-AA-----TAAC-ACACA-AAACGGT-GAA-AA--A
gi|7 : -TCAATATTAAAGT-A---------TTATGTATACCGAAATTAAATGTAAAACCGTTT-TAA-ATAGACTG--ATCT--------------AAATTTT-A-AAATTATAAACTGCAGAGAAAC-GT-GAA-AT--AA---GA-A-AG--GGGAA---CCCCAGCTTGATAA
gi|8 : ct---TAT-CA-ACAATATCAATATCA---------TTACATATACTGGAATTAAATGTAATAACATTTATAATATAGCTGA--ATTTTAAAAGAGTAATAGAATCTTGAA-AAAGAAGAATC-ACGCATAAAT-GCGGAA-AA--AAAT-GA-AGGA--GAGtcatgtcatttcgtcaatctctat
gi|9 : T---TATAT--A--ACGTATGCAAATGTAATGAACTAC-AAGTTAT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTTTGTGTGAATGTATATGTTTACCGGGTTGATAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 11 1 222 11 222 1111111111 0000000000000000000000000000000000000 2222 11111 111 222222222 11 111
lowQualScore : 88 5 111 1 88 1 444 3333333333 3333333333333333333333333333333333333 1 333 0000 33333 1 8 8 000 5 5 5 000000000 0 0 11 4 2 2 8 4 5 4 5 5 5 77 6 6 99 000 1 1 3 3
lowQualScore : .. . ... . .. . ... .......... ..................................... . ... .... ..... . . . ... . . . ......... . . .. . . . . . . . . . . .. . . .. ... . . . .
lowQualScore : 00 0 000 0 55 0 333 0000000000 3333333333333333333333333333333333333 0 000 8888 00000 4 0 0 000 7 0 0 000000000 3 6 00 6 6 6 9 4 0 5 7 7 7 99 7 7 22 000 0 0 5 2
consensus : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGTTT--AAACATATTCTACCACGTTTGT-------TA-A--CATAT-AA--TAATAANANTNCGCACGTAAAAACATATT---TATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
Reference ( family-495 ) : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGTNT--GAATATATTTTACCATGTTTGT-------TANA--CATGTCAACATAATANGNNNNCGCACGNAAANNNATATT---TATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
gi|1 : AATTAGTTTCACAGAA---TGATATTTAACATTGGATATGTTTAGTTT--AAA----------CATGTTT----------------------------TATGACTTCGCACGAAAATACATATT---TATATGAA--AAATACGCAAATGGATTGAACTAT-AAGTTAT-AATAACATTGGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCTTGTATACCGGAATGAAATGTAATTACATCCATAATATAGATTA--ATTCGAAATGAATACTCGAAACTTG-A-AAAGAAGAAAC-ACACATAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTATCCGGTTGCTCATCTCACTAGAAACCATACAATCGCCCCAAATACTGTTCAAATTAAAA-TTCGACAGCCCCGCATGACACACTT
gi|10 : g---TCCTCGCTTGATAAACTTGCCCTGTTGCCCATCACAATATAAACCAAACAATCGCCCCACATACTGTTCAATTTTAAATTTCGACAACCACGCGTATCATACTT
gi|11 : ---TCCCCGCTTGATTAATTAACCATGTTGCCCATCATAATAGAAACCAAACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGTCACGCCTAACATACTTt
gi|12 : TGTATACCTGGATTAAATATTTTAACATTCATGATATAGGTGA--ATTTGAAAAGAATAATAGAAACCTGAA-AAAGAAATAAC-ACTCAAAA
gi|13 : tttATATCTATCG-AATGAAACATAACAACTTCTACAATATAGGTGA--ATTCCAAAAGAAAAATAGCAACTTG-AGAAAGAAGAtg
gi|14 : AC--A--ACACACATAAATGGATTACACTAC-ATGTAATTAACAACATTAGTTACAGTTC
gi|15 : CCGGAATGAAATGTAATAAAATTCATAATATAGGTTA--ATTTTAAgc
gi|2 : ---TAT-TA-TCAATATCAATAT-AAAAAAAATATCATGTATACCGGAATGAAATGTAAAAACATTCATAATATAGGTTATCATTTTAAATGAATACTAGGAACGTG-A-AAAGAAGAAAC-ACACAGAAAT-GT-GGACAA--AAAT-GAGAGAGTTGGGGA---TCCCCGCTTGATAAACTCACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACTTACTGTTCAATTTAAAATTTCGACAACCACGTGTAACATACT
gi|3 : ---TAT-CA-CCAACATCAATAT-A---------TTATGTATACCGGAATTAAATGTAATAACATTCATAACGAAGGTTATAATTTTAAATGAATACCATAAACTTG-A-AAAGAAAAAAT-ACACAGAAAT-GT-GAA-AAAAAAAT-GA-AGGA--CGAAA---TCCCCGCTTGATAAACTTACCCTATTGCCCATCATAACAGAAACCAAACAATCGCCCCACATATTGTTCAATTTAAAAACTCGACAGCCACGCTTAACATACTT
gi|4 : ---TAT-CACTTAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATATTATAGGTTA--ATTTTAAATGAATACTATAAACTTG-A-TAAGAAGAAAC-ACACAGAAAT-GT-GAA-CA--AAATGGA-AGGG--GGGAAATTTCCCCGCTTGATAAACTTACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACATTATGTTAAAGTTAAAATTt
gi|5 : AATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAATTTATTTAGTTT--AAATATATTTTACCATGTTTGT-------TACA--TATATCAACATAATAAACAGATGCATATAAAATGATAACAAATATAT--A--ACATATACAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCCCTCCA----ATGTG-GCGGTATAAATGT-A----------CATGTTTCCAGGGTTGAAAat
gi|6 : ATATT---TACAT--ATGAAATAAGGAAATGGATATAACTACTAACTTAA-AACAACATTAGTTACAGCTCTCTCCAATTTAA-CT-TTAATATTGATAT-A---------TTG-GTTTATCGGAATGAAATTAAAAAATATTTATAATATAAGTGA--ATTTGAAAAGAATAATAGAAACTTG-A-AA-----TAAC-ACACA-AAACGGT-GAA-AA--A
gi|7 : -TCAATATTAAAGT-A---------TTATGTATACCGAAATTAAATGTAAAACCGTTT-TAA-ATAGACTG--ATCT--------------AAATTTT-A-AAATTATAAACTGCAGAGAAAC-GT-GAA-AT--AA---GA-A-AG--GGGAA---CCCCAGCTTGATAATCATGTCATTTCGTCAATCTCTAT
gi|8 : ct---TAT-CA-ACAATATCAATATCA---------TTACATATACTGGAATTAAATGTAATAACATTTATAATATAGCTGA--ATTTTAAAAGAGTAATAGAATCTTGAA-AAAGAAGAATC-ACGCATAAAT-GCGGAA-AA--AAAT-GA-AGGA--GAG
gi|9 : ATTTATATAGTGTTCAAACATATTCTATAACATATGTAACAATATAGAGACATATAAAATTAACAACAGTG---ACGTGATAACAAATT----ATAT--A--ACGTATGCAAATGTAATGAACTAC-AAGTTAT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTTTGTGTGAATGTATATGTTTACCGGGTTGATAAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111
lowQualScore : 11 1 222 11 11 66666666666666666666666666666666666666666666666666 33333 11 11111 111 222222222 11 111
lowQualScore : 88 5 111 1 88 88 0 55555555555555555555555555555555555555555555555555 33333 4 22 33333 1 8 8 000 5 5 5 000000000 0 0 11 4 2 2 8 4 5 4 5 5 5 77 6 6 99 000 1 1 3 3
lowQualScore : .. . ... . .. .. . .................................................. ..... . .. ..... . . . ... . . . ......... . . .. . . . . . . . . . . .. . . .. ... . . . .
lowQualScore : 00 0 000 0 55 33 7 77777777777777777777777777777777777777777777777777 33333 0 55 00000 4 0 0 000 7 0 0 000000000 3 6 00 6 6 6 9 4 0 5 7 7 7 99 7 7 22 000 0 0 5 2
consensus : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-ACGT-TGT-------TA----CATATA-----A---TAACAA-ANTNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
Reference ( family-495 ) : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTCTACCACGTTTGT-------TA---ACATATA-----A---TAATAANANTNCGCACGTAAAA-----ACATATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
gi|1 : AATTAGTTTCACAGAA---TGATATTTAACATTGGATATGTTTAGT--TTAAACATGTTTTA-------TG------------------------------------ACTTCGCACGAAAAT-----ACATATTTATATGAA--AAATACGCAAATGGATTGAACTAT-AAGTTAT-AATAACATTGGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCTTGTATACCGGAATGAAATGTAATTACATCCATAATATAGATTA--ATTCGAAATGAATACTCGAAACTTG-A-AAAGAAGAAAC-ACACATAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTATCCGGTTGCTCATCTCACTAGAAACCATACAATCGCCCCAAATACTGTTCAAATTAAAA-TTCGACAGCCCCGCATGACACACTT
gi|10 : g---TCCTCGCTTGATAAACTTGCCCTGTTGCCCATCACAATATAAACCAAACAATCGCCCCACATACTGTTCAATTTTAAATTTCGACAACCACGCGTATCATACTT
gi|11 : ---TCCCCGCTTGATTAATTAACCATGTTGCCCATCATAATAGAAACCAAACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGTCACGCCTAACATACTTt
gi|12 : TGTATACCTGGATTAAATATTTTAACATTCATGATATAGGTGA--ATTTGAAAAGAATAATAGAAACCTGAA-AAAGAAATAAC-ACTCAAAA
gi|13 : tttATATCTATCG-AATGAAACATAACAACTTCTACAATATAGGTGA--ATTCCAAAAGAAAAATAGCAACTTG-AGAAAGAAGAtg
gi|14 : AC--A--ACACACATAAATGGATTACACTAC-ATGTAATTAACAACATTAGTTACAGTTC
gi|15 : CCGGAATGAAATGTAATAAAATTCATAATATAGGTTA--ATTTTAAgc
gi|2 : ---TAT-TA-TCAATATCAATAT-AAAAAAAATATCATGTATACCGGAATGAAATGTAAAAACATTCATAATATAGGTTATCATTTTAAATGAATACTAGGAACGTG-A-AAAGAAGAAAC-ACACAGAAAT-GT-GGACAA--AAAT-GAGAGAGTTGGGGA---TCCCCGCTTGATAAACTCACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACTTACTGTTCAATTTAAAATTTCGACAACCACGTGTAACATACT
gi|3 : ---TAT-CA-CCAACATCAATAT-A---------TTATGTATACCGGAATTAAATGTAATAACATTCATAACGAAGGTTATAATTTTAAATGAATACCATAAACTTG-A-AAAGAAAAAAT-ACACAGAAAT-GT-GAA-AAAAAAAT-GA-AGGA--CGAAA---TCCCCGCTTGATAAACTTACCCTATTGCCCATCATAACAGAAACCAAACAATCGCCCCACATATTGTTCAATTTAAAAACTCGACAGCCACGCTTAACATACTT
gi|4 : ---TAT-CACTTAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATATTATAGGTTA--ATTTTAAATGAATACTATAAACTTG-A-TAAGAAGAAAC-ACACAGAAAT-GT-GAA-CA--AAATGGA-AGGG--GGGAAATTTCCCCGCTTGATAAACTTACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACATTATGTTAAAGTTAAAATTt
gi|5 : AATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAATTTATTTAGT--TTAAATATATTTTACCATGTTTGT-------TA----CATATATCAACA---TAATAAACAGATGCATATAAAATGATAACAAAT--ATAT--A--ACATATACAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCCCTCCA----ATGTG-GCGGTATAAATGT-A----------CATGTTTCCAGGGTTGAAAat
gi|6 : ATATTTACAT--ATGAAATAAGGAAATGGATATAACTACTAACTTAA-AACAACATTAGTTACAGCTCTCTCCAATTTAA-CT-TTAATATTGATAT-A---------TTG-GTTTATCGGAATGAAATTAAAAAATATTTATAATATAAGTGA--ATTTGAAAAGAATAATAGAAACTTG-A-AA-----TAAC-ACACA-AAACGGT-GAA-AA--A
gi|7 : -TCAATATTAAAGT-A---------TTATGTATACCGAAATTAAATGTAAAACCGTTT-TAA-ATAGACTG--ATCT--------------AAATTTT-A-AAATTATAAACTGCAGAGAAAC-GT-GAA-AT--AA---GA-A-AG--GGGAA---CCCCAGCTTGATAATCATGTCATTTCGTCAATCTCTAT
gi|8 : ct---TAT-CA-ACAATATCAATATCA---------TTACATATACTGGAATTAAATGTAATAACATTTATAATATAGCTGA--ATTTTAAAAGAGTAATAGAATCTTGAA-AAAGAAGAATC-ACGCATAAAT-GCGGAA-AA--AAAT-GA-AGGA--GAG
gi|9 : ATTTATATAGTGTTCAAACATATTCTATAACATATGTAACAATATAGAGACATATA-----AAATTAACAACAGTG---ACGTGATA-----ACAAATT-ATAT--A--ACGTATGCAAATGTAATGAACTAC-AAGTTAT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTTTGTGTGAATGTATATGTTTACCGGGTTGATAAT
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222
lowQualScore : 11 1 222 11 11 0000000000000000000000000000000000000000000000000000 33333 11111 111 222222222 11 111
lowQualScore : 88 5 111 1 88 88 7777777777777777777777777777777777777777777777777777 33333 1 66 33333 1 8 8 000 5 5 5 000000000 0 0 11 4 2 2 8 4 5 4 5 5 5 77 6 6 99 000 1 1 3 3
lowQualScore : .. . ... . .. .. .................................................... ..... . .. ..... . . . ... . . . ......... . . .. . . . . . . . . . . .. . . .. ... . . . .
lowQualScore : 00 0 000 0 55 33 0000000000000000000000000000000000000000000000000000 33333 0 55 00000 4 0 0 000 7 0 0 000000000 3 6 00 6 6 6 9 4 0 5 7 7 7 99 7 7 22 000 0 0 5 2
consensus : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-ACGT-T-GT-----T------ACATATA-----A---TAACAA-AC-TNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
Reference ( family-495 ) : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-ACGT-T-GT-----T------ACATATA-----A---TAACAA-AN-TNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
gi|1 : AATTAGTTTCACAGAA---TGATATTTAACATTGGATATGTTTAGT--TTAAACATGTTTTA-------T-G------------------------------------AC-TTCGCACGAAAAT-----ACATATTTATATGAA--AAATACGCAAATGGATTGAACTAT-AAGTTAT-AATAACATTGGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCTTGTATACCGGAATGAAATGTAATTACATCCATAATATAGATTA--ATTCGAAATGAATACTCGAAACTTG-A-AAAGAAGAAAC-ACACATAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTATCCGGTTGCTCATCTCACTAGAAACCATACAATCGCCCCAAATACTGTTCAAATTAAAA-TTCGACAGCCCCGCATGACACACTT
gi|10 : g---TCCTCGCTTGATAAACTTGCCCTGTTGCCCATCACAATATAAACCAAACAATCGCCCCACATACTGTTCAATTTTAAATTTCGACAACCACGCGTATCATACTT
gi|11 : ---TCCCCGCTTGATTAATTAACCATGTTGCCCATCATAATAGAAACCAAACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGTCACGCCTAACATACTTt
gi|12 : TGTATACCTGGATTAAATATTTTAACATTCATGATATAGGTGA--ATTTGAAAAGAATAATAGAAACCTGAA-AAAGAAATAAC-ACTCAAAA
gi|13 : tttATATCTATCG-AATGAAACATAACAACTTCTACAATATAGGTGA--ATTCCAAAAGAAAAATAGCAACTTG-AGAAAGAAGAtg
gi|14 : AC--A--ACACACATAAATGGATTACACTAC-ATGTAATTAACAACATTAGTTACAGTTC
gi|15 : CCGGAATGAAATGTAATAAAATTCATAATATAGGTTA--ATTTTAAgc
gi|2 : ---TAT-TA-TCAATATCAATAT-AAAAAAAATATCATGTATACCGGAATGAAATGTAAAAACATTCATAATATAGGTTATCATTTTAAATGAATACTAGGAACGTG-A-AAAGAAGAAAC-ACACAGAAAT-GT-GGACAA--AAAT-GAGAGAGTTGGGGA---TCCCCGCTTGATAAACTCACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACTTACTGTTCAATTTAAAATTTCGACAACCACGTGTAACATACT
gi|3 : ---TAT-CA-CCAACATCAATAT-A---------TTATGTATACCGGAATTAAATGTAATAACATTCATAACGAAGGTTATAATTTTAAATGAATACCATAAACTTG-A-AAAGAAAAAAT-ACACAGAAAT-GT-GAA-AAAAAAAT-GA-AGGA--CGAAA---TCCCCGCTTGATAAACTTACCCTATTGCCCATCATAACAGAAACCAAACAATCGCCCCACATATTGTTCAATTTAAAAACTCGACAGCCACGCTTAACATACTT
gi|4 : ---TAT-CACTTAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATATTATAGGTTA--ATTTTAAATGAATACTATAAACTTG-A-TAAGAAGAAAC-ACACAGAAAT-GT-GAA-CA--AAATGGA-AGGG--GGGAAATTTCCCCGCTTGATAAACTTACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACATTATGTTAAAGTTAAAATTt
gi|5 : AATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAATTTATTTAGT--TTAAATATATTTTACCATGT-TTGT-----T------ACATATATCAACA---TAATAA-ACAGATGCATATAAAATGATAACAAAT--ATAT--A--ACATATACAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCCCTCCA----ATGTG-GCGGTATAAATGT-A----------CATGTTTCCAGGGTTGAAAat
gi|6 : ATATTTACAT--ATGAAATAAGGAAATGGATATAACTACTAACTTAA-AACAACATTAGTTACAGCTCTCTCCAATTTAA-CT-TTAATATTGATAT-A---------TTG-GTTTATCGGAATGAAATTAAAAAATATTTATAATATAAGTGA--ATTTGAAAAGAATAATAGAAACTTG-A-AA-----TAAC-ACACA-AAACGGT-GAA-AA--A
gi|7 : -TCAATATTAAAGT-A---------TTATGTATACCGAAATTAAATGTAAAACCGTTT-TAA-ATAGACTG--ATCT--------------AAATTTT-A-AAATTATAAACTGCAGAGAAAC-GT-GAA-AT--AA---GA-A-AG--GGGAA---CCCCAGCTTGATAATCATGTCATTTCGTCAATCTCTAT
gi|8 : ct---TAT-CA-ACAATATCAATATCA---------TTACATATACTGGAATTAAATGTAATAACATTTATAATATAGCTGA--ATTTTAAAAGAGTAATAGAATCTTGAA-AAAGAAGAATC-ACGCATAAAT-GCGGAA-AA--AAAT-GA-AGGA--GAG
gi|9 : ATTTATATAGTGTTCAAACATATTCTATAACATAT-GTAACAATATAGAGACATATA-----AAATTAACAACAG-TG---ACGTGATA-----ACAAA-TTATAT--A--ACGTATGCAAATGTAATGAACTAC-AAGTTAT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTTTGTGTGAATGTATATGTTTACCGGGTTGATAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 222 11 11 9999999999999999999999999999999999999999999999999999 33333 11 11111 111 222222222 11 111
lowQualScore : 88 5 111 1 88 88 6666666666666666666666666666666666666666666666666666 6 33333 1 22 33333 1 8 8 000 5 5 5 000000000 0 0 11 4 2 2 8 4 5 4 5 5 5 77 6 6 99 000 1 1 3 3
lowQualScore : .. . ... . .. .. .................................................... . ..... . .. ..... . . . ... . . . ......... . . .. . . . . . . . . . . .. . . .. ... . . . .
lowQualScore : 00 0 000 0 55 33 3333333333333333333333333333333333333333333333333333 7 33333 0 55 00000 4 0 0 000 7 0 0 000000000 3 6 00 6 6 6 9 4 0 5 7 7 7 99 7 7 22 000 0 0 5 2
consensus : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-A-CGT-T-GT-------TA----CATATA-----A---TAACAAAC-GNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
Reference ( family-495 ) : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-A-CGT-T-GT-------TA----CATATA-----A---TAACAAAC-TNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
gi|1 : AATTAGTTTCACAGAA---TGATATTTAACATTGGATATGTTTAGT--TTAAACATGTTTTA--------T-G-----------------------------------AC-TTCGCACGAAAAT-----ACATATTTATATGAA--AAATACGCAAATGGATTGAACTAT-AAGTTAT-AATAACATTGGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCTTGTATACCGGAATGAAATGTAATTACATCCATAATATAGATTA--ATTCGAAATGAATACTCGAAACTTG-A-AAAGAAGAAAC-ACACATAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTATCCGGTTGCTCATCTCACTAGAAACCATACAATCGCCCCAAATACTGTTCAAATTAAAA-TTCGACAGCCCCGCATGACACACTT
gi|10 : g---TCCTCGCTTGATAAACTTGCCCTGTTGCCCATCACAATATAAACCAAACAATCGCCCCACATACTGTTCAATTTTAAATTTCGACAACCACGCGTATCATACTT
gi|11 : ---TCCCCGCTTGATTAATTAACCATGTTGCCCATCATAATAGAAACCAAACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGTCACGCCTAACATACTTt
gi|12 : TGTATACCTGGATTAAATATTTTAACATTCATGATATAGGTGA--ATTTGAAAAGAATAATAGAAACCTGAA-AAAGAAATAAC-ACTCAAAA
gi|13 : tttATATCTATCG-AATGAAACATAACAACTTCTACAATATAGGTGA--ATTCCAAAAGAAAAATAGCAACTTG-AGAAAGAAGAtg
gi|14 : AC--A--ACACACATAAATGGATTACACTAC-ATGTAATTAACAACATTAGTTACAGTTC
gi|15 : CCGGAATGAAATGTAATAAAATTCATAATATAGGTTA--ATTTTAAgc
gi|2 : ---TAT-TA-TCAATATCAATAT-AAAAAAAATATCATGTATACCGGAATGAAATGTAAAAACATTCATAATATAGGTTATCATTTTAAATGAATACTAGGAACGTG-A-AAAGAAGAAAC-ACACAGAAAT-GT-GGACAA--AAAT-GAGAGAGTTGGGGA---TCCCCGCTTGATAAACTCACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACTTACTGTTCAATTTAAAATTTCGACAACCACGTGTAACATACT
gi|3 : ---TAT-CA-CCAACATCAATAT-A---------TTATGTATACCGGAATTAAATGTAATAACATTCATAACGAAGGTTATAATTTTAAATGAATACCATAAACTTG-A-AAAGAAAAAAT-ACACAGAAAT-GT-GAA-AAAAAAAT-GA-AGGA--CGAAA---TCCCCGCTTGATAAACTTACCCTATTGCCCATCATAACAGAAACCAAACAATCGCCCCACATATTGTTCAATTTAAAAACTCGACAGCCACGCTTAACATACTT
gi|4 : ---TAT-CACTTAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATATTATAGGTTA--ATTTTAAATGAATACTATAAACTTG-A-TAAGAAGAAAC-ACACAGAAAT-GT-GAA-CA--AAATGGA-AGGG--GGGAAATTTCCCCGCTTGATAAACTTACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACATTATGTTAAAGTTAAAATTt
gi|5 : AATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAATTTATTTAGT--TTAAATATATTTTACCA-TGT-TTGT-------TA----CATATATCAACA---TAATAAACAGATGCATATAAAATGATAACAAAT--ATAT--A--ACATATACAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCCCTCCA----ATGTG-GCGGTATAAATGT-A----------CATGTTTCCAGGGTTGAAAat
gi|6 : ATATTTACAT--ATGAAATAAGGAAATGGATATAACTACTAACTTAA-AACAACATTAGTTACAGCTCTCTCCAATTTAA-CT-TTAATATTGATAT-A---------TTG-GTTTATCGGAATGAAATTAAAAAATATTTATAATATAAGTGA--ATTTGAAAAGAATAATAGAAACTTG-A-AA-----TAAC-ACACA-AAACGGT-GAA-AA--A
gi|7 : -TCAATATTAAAGT-A---------TTATGTATACCGAAATTAAATGTAAAACCGTTT-TAA-ATAGACTG--ATCT--------------AAATTTT-A-AAATTATAAACTGCAGAGAAAC-GT-GAA-AT--AA---GA-A-AG--GGGAA---CCCCAGCTTGATAATCATGTCATTTCGTCAATCTCTAT
gi|8 : ct---TAT-CA-ACAATATCAATATCA---------TTACATATACTGGAATTAAATGTAATAACATTTATAATATAGCTGA--ATTTTAAAAGAGTAATAGAATCTTGAA-AAAGAAGAATC-ACGCATAAAT-GCGGAA-AA--AAAT-GA-AGGA--GAG
gi|9 : ATTTATATAGTGTTCAAACATATTCTAT-AACATAT-GTAACAATATAGAGACATATA-----AAATTAACAA-C-AGTG-ACGTGATA-----ACAAATT-ATAT--A--ACGTATGCAAATGTAATGAACTAC-AAGTTAT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTTTGTGTGAATGTATATGTTTACCGGGTTGATAAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111
lowQualScore : 11 1 222 11 11 99999999999999999999999999999999999999999999 1111 33333 11111 111 222222222 11 111
lowQualScore : 88 5 111 1 88 88 33333333333333333333333333333333333333333333 8888 6 33333 1 66 33333 1 8 8 000 5 5 5 000000000 0 0 11 4 2 2 8 4 5 4 5 5 5 77 6 6 99 000 1 1 3 3
lowQualScore : .. . ... . .. .. ............................................ .... . ..... . .. ..... . . . ... . . . ......... . . .. . . . . . . . . . . .. . . .. ... . . . .
lowQualScore : 00 0 000 0 55 33 77777777777777777777777777777777777777777777 7777 7 33333 0 55 00000 4 0 0 000 7 0 0 000000000 3 6 00 6 6 6 9 4 0 5 7 7 7 99 7 7 22 000 0 0 5 2
consensus : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-ACGT-T-GT-----T------ACATATA-----A---TAAC-AAC-GNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
Reference ( family-495 ) : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-ACGT-T-GT-----T------ACATATA-----A---TAACAAAC-GNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
gi|1 : AATTAGTTTCACAGAA---TGATATTTAACATTGGATATGTTTAGT--TTAAACATGTTTTA-------T-G-----------------------------------AC-TTCGCACGAAAAT-----ACATATTTATATGAA--AAATACGCAAATGGATTGAACTAT-AAGTTAT-AATAACATTGGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCTTGTATACCGGAATGAAATGTAATTACATCCATAATATAGATTA--ATTCGAAATGAATACTCGAAACTTG-A-AAAGAAGAAAC-ACACATAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTATCCGGTTGCTCATCTCACTAGAAACCATACAATCGCCCCAAATACTGTTCAAATTAAAA-TTCGACAGCCCCGCATGACACACTT
gi|10 : g---TCCTCGCTTGATAAACTTGCCCTGTTGCCCATCACAATATAAACCAAACAATCGCCCCACATACTGTTCAATTTTAAATTTCGACAACCACGCGTATCATACTT
gi|11 : ---TCCCCGCTTGATTAATTAACCATGTTGCCCATCATAATAGAAACCAAACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGTCACGCCTAACATACTTt
gi|12 : TGTATACCTGGATTAAATATTTTAACATTCATGATATAGGTGA--ATTTGAAAAGAATAATAGAAACCTGAA-AAAGAAATAAC-ACTCAAAA
gi|13 : tttATATCTATCG-AATGAAACATAACAACTTCTACAATATAGGTGA--ATTCCAAAAGAAAAATAGCAACTTG-AGAAAGAAGAtg
gi|14 : AC--A--ACACACATAAATGGATTACACTAC-ATGTAATTAACAACATTAGTTACAGTTC
gi|15 : CCGGAATGAAATGTAATAAAATTCATAATATAGGTTA--ATTTTAAgc
gi|2 : ---TAT-TA-TCAATATCAATAT-AAAAAAAATATCATGTATACCGGAATGAAATGTAAAAACATTCATAATATAGGTTATCATTTTAAATGAATACTAGGAACGTG-A-AAAGAAGAAAC-ACACAGAAAT-GT-GGACAA--AAAT-GAGAGAGTTGGGGA---TCCCCGCTTGATAAACTCACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACTTACTGTTCAATTTAAAATTTCGACAACCACGTGTAACATACT
gi|3 : ---TAT-CA-CCAACATCAATAT-A---------TTATGTATACCGGAATTAAATGTAATAACATTCATAACGAAGGTTATAATTTTAAATGAATACCATAAACTTG-A-AAAGAAAAAAT-ACACAGAAAT-GT-GAA-AAAAAAAT-GA-AGGA--CGAAA---TCCCCGCTTGATAAACTTACCCTATTGCCCATCATAACAGAAACCAAACAATCGCCCCACATATTGTTCAATTTAAAAACTCGACAGCCACGCTTAACATACTT
gi|4 : ---TAT-CACTTAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATATTATAGGTTA--ATTTTAAATGAATACTATAAACTTG-A-TAAGAAGAAAC-ACACAGAAAT-GT-GAA-CA--AAATGGA-AGGG--GGGAAATTTCCCCGCTTGATAAACTTACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACATTATGTTAAAGTTAAAATTt
gi|5 : AATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAATTTATTTAGT--TTAAATATATTTTACCATGT-TTGT-----T------ACATATATCAACA---TAATAAACAGATGCATATAAAATGATAACAAAT--ATAT--A--ACATATACAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCCCTCCA----ATGTG-GCGGTATAAATGT-A----------CATGTTTCCAGGGTTGAAAat
gi|6 : ATATTTACAT--ATGAAATAAGGAAATGGATATAACTACTAACTTAA-AACAACATTAGTTACAGCTCTCTCCAATTTAA-CT-TTAATATTGATAT-A---------TTG-GTTTATCGGAATGAAATTAAAAAATATTTATAATATAAGTGA--ATTTGAAAAGAATAATAGAAACTTG-A-AA-----TAAC-ACACA-AAACGGT-GAA-AA--A
gi|7 : -TCAATATTAAAGT-A---------TTATGTATACCGAAATTAAATGTAAAACCGTTT-TAA-ATAGACTG--ATCT--------------AAATTTT-A-AAATTATAAACTGCAGAGAAAC-GT-GAA-AT--AA---GA-A-AG--GGGAA---CCCCAGCTTGATAATCATGTCATTTCGTCAATCTCTAT
gi|8 : ct---TAT-CA-ACAATATCAATATCA---------TTACATATACTGGAATTAAATGTAATAACATTTATAATATAGCTGA--ATTTTAAAAGAGTAATAGAATCTTGAA-AAAGAAGAATC-ACGCATAAAT-GCGGAA-AA--AAAT-GA-AGGA--GAG
gi|9 : ATTTATATAGTGTTCAAACATATTCTATAACATAT-GTAACAATATAGAGACATATA-----AAATTAAC-AAC-AGTG-ACGTGATA-----ACAAA-TTATAT--A--ACGTATGCAAATGTAATGAACTAC-AAGTTAT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTTTGTGTGAATGTATATGTTTACCGGGTTGATAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 222 11 11 9999999999999999999999999999999999999999999999999999 33333 11 11111 111 222222222 11 111
lowQualScore : 88 5 111 1 88 88 0000000000000000000000000000000000000000000000000000 6 33333 1 22 33333 1 8 8 000 5 5 5 000000000 0 0 11 4 2 2 8 4 5 4 5 5 5 77 6 6 99 000 1 1 3 3
lowQualScore : .. . ... . .. .. .................................................... . ..... . .. ..... . . . ... . . . ......... . . .. . . . . . . . . . . .. . . .. ... . . . .
lowQualScore : 00 0 000 0 55 33 3333333333333333333333333333333333333333333333333333 7 33333 0 55 00000 4 0 0 000 7 0 0 000000000 3 6 00 6 6 6 9 4 0 5 7 7 7 99 7 7 22 000 0 0 5 2
consensus : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-A-CGT-T-GT-------TA----CATATA-----A---TAACAA-C-GNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
Reference ( family-495 ) : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-A-CGT-T-GT-------TA----CATATA-----A---TAACAA-C-GNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
gi|1 : AATTAGTTTCACAGAA---TGATATTTAACATTGGATATGTTTAGT--TTAAACATGTTTTA--------T-G----------------------------------A-C-TTCGCACGAAAAT-----ACATATTTATATGAA--AAATACGCAAATGGATTGAACTAT-AAGTTAT-AATAACATTGGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCTTGTATACCGGAATGAAATGTAATTACATCCATAATATAGATTA--ATTCGAAATGAATACTCGAAACTTG-A-AAAGAAGAAAC-ACACATAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTATCCGGTTGCTCATCTCACTAGAAACCATACAATCGCCCCAAATACTGTTCAAATTAAAA-TTCGACAGCCCCGCATGACACACTT
gi|10 : g---TCCTCGCTTGATAAACTTGCCCTGTTGCCCATCACAATATAAACCAAACAATCGCCCCACATACTGTTCAATTTTAAATTTCGACAACCACGCGTATCATACTT
gi|11 : ---TCCCCGCTTGATTAATTAACCATGTTGCCCATCATAATAGAAACCAAACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGTCACGCCTAACATACTTt
gi|12 : TGTATACCTGGATTAAATATTTTAACATTCATGATATAGGTGA--ATTTGAAAAGAATAATAGAAACCTGAA-AAAGAAATAAC-ACTCAAAA
gi|13 : tttATATCTATCG-AATGAAACATAACAACTTCTACAATATAGGTGA--ATTCCAAAAGAAAAATAGCAACTTG-AGAAAGAAGAtg
gi|14 : AC--A--ACACACATAAATGGATTACACTAC-ATGTAATTAACAACATTAGTTACAGTTC
gi|15 : CCGGAATGAAATGTAATAAAATTCATAATATAGGTTA--ATTTTAAgc
gi|2 : ---TAT-TA-TCAATATCAATAT-AAAAAAAATATCATGTATACCGGAATGAAATGTAAAAACATTCATAATATAGGTTATCATTTTAAATGAATACTAGGAACGTG-A-AAAGAAGAAAC-ACACAGAAAT-GT-GGACAA--AAAT-GAGAGAGTTGGGGA---TCCCCGCTTGATAAACTCACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACTTACTGTTCAATTTAAAATTTCGACAACCACGTGTAACATACT
gi|3 : ---TAT-CA-CCAACATCAATAT-A---------TTATGTATACCGGAATTAAATGTAATAACATTCATAACGAAGGTTATAATTTTAAATGAATACCATAAACTTG-A-AAAGAAAAAAT-ACACAGAAAT-GT-GAA-AAAAAAAT-GA-AGGA--CGAAA---TCCCCGCTTGATAAACTTACCCTATTGCCCATCATAACAGAAACCAAACAATCGCCCCACATATTGTTCAATTTAAAAACTCGACAGCCACGCTTAACATACTT
gi|4 : ---TAT-CACTTAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATATTATAGGTTA--ATTTTAAATGAATACTATAAACTTG-A-TAAGAAGAAAC-ACACAGAAAT-GT-GAA-CA--AAATGGA-AGGG--GGGAAATTTCCCCGCTTGATAAACTTACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACATTATGTTAAAGTTAAAATTt
gi|5 : AATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAATTTATTTAGT--TTAAATATATTTTACCA-TGT-TTGT-------TA----CATATATCAACA---TAATAAACAGATGCATATAAAATGATAACAAAT--ATAT--A--ACATATACAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCCCTCCA----ATGTG-GCGGTATAAATGT-A----------CATGTTTCCAGGGTTGAAAat
gi|6 : ATATTTACAT--ATGAAATAAGGAAATGGATATAACTACTAACTTAA-AACAACATTAGTTACAGCTCTCTCCAATTTAA-CT-TTAATATTGATAT-A---------TTG-GTTTATCGGAATGAAATTAAAAAATATTTATAATATAAGTGA--ATTTGAAAAGAATAATAGAAACTTG-A-AA-----TAAC-ACACA-AAACGGT-GAA-AA--A
gi|7 : -TCAATATTAAAGT-A---------TTATGTATACCGAAATTAAATGTAAAACCGTTT-TAA-ATAGACTG--ATCT--------------AAATTTT-A-AAATTATAAACTGCAGAGAAAC-GT-GAA-AT--AA---GA-A-AG--GGGAA---CCCCAGCTTGATAATCATGTCATTTCGTCAATCTCTAT
gi|8 : ct---TAT-CA-ACAATATCAATATCA---------TTACATATACTGGAATTAAATGTAATAACATTTATAATATAGCTGA--ATTTTAAAAGAGTAATAGAATCTTGAA-AAAGAAGAATC-ACGCATAAAT-GCGGAA-AA--AAAT-GA-AGGA--GAG
gi|9 : ATTTATATAGTGTTCAAACATATTCTAT-AACATAT-GTAACAATATAGAGACATATA-----AAATTAACAA-C-AGTG-ACGTGATA-----ACAAATT-ATAT--A--ACGTATGCAAATGTAATGAACTAC-AAGTTAT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTTTGTGTGAATGTATATGTTTACCGGGTTGATAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 222 11 11 9999999999999999999999999999999999999999999999999999 33333 11 11111 111 222222222 11 111
lowQualScore : 88 5 111 1 88 88 0000000000000000000000000000000000000000000000000000 6 33333 1 22 33333 1 8 8 000 5 5 5 000000000 0 0 11 4 2 2 8 4 5 4 5 5 5 77 6 6 99 000 1 1 3 3
lowQualScore : .. . ... . .. .. .................................................... . ..... . .. ..... . . . ... . . . ......... . . .. . . . . . . . . . . .. . . .. ... . . . .
lowQualScore : 00 0 000 0 55 33 3333333333333333333333333333333333333333333333333333 7 33333 0 55 00000 4 0 0 000 7 0 0 000000000 3 6 00 6 6 6 9 4 0 5 7 7 7 99 7 7 22 000 0 0 5 2
consensus : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-A-CGT-T-GT-------TA----CATATA-----A---TAACAA-C-GNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
Reference ( family-495 ) : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-A-CGT-T-GT-------TA----CATATA-----A---TAACAA-C-GNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
gi|1 : AATTAGTTTCACAGAA---TGATATTTAACATTGGATATGTTTAGT--TTAAACATGTTTTA--------T-G----------------------------------A-C-TTCGCACGAAAAT-----ACATATTTATATGAA--AAATACGCAAATGGATTGAACTAT-AAGTTAT-AATAACATTGGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCTTGTATACCGGAATGAAATGTAATTACATCCATAATATAGATTA--ATTCGAAATGAATACTCGAAACTTG-A-AAAGAAGAAAC-ACACATAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTATCCGGTTGCTCATCTCACTAGAAACCATACAATCGCCCCAAATACTGTTCAAATTAAAA-TTCGACAGCCCCGCATGACACACTT
gi|10 : g---TCCTCGCTTGATAAACTTGCCCTGTTGCCCATCACAATATAAACCAAACAATCGCCCCACATACTGTTCAATTTTAAATTTCGACAACCACGCGTATCATACTT
gi|11 : ---TCCCCGCTTGATTAATTAACCATGTTGCCCATCATAATAGAAACCAAACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGTCACGCCTAACATACTTt
gi|12 : TGTATACCTGGATTAAATATTTTAACATTCATGATATAGGTGA--ATTTGAAAAGAATAATAGAAACCTGAA-AAAGAAATAAC-ACTCAAAA
gi|13 : tttATATCTATCG-AATGAAACATAACAACTTCTACAATATAGGTGA--ATTCCAAAAGAAAAATAGCAACTTG-AGAAAGAAGAtg
gi|14 : AC--A--ACACACATAAATGGATTACACTAC-ATGTAATTAACAACATTAGTTACAGTTC
gi|15 : CCGGAATGAAATGTAATAAAATTCATAATATAGGTTA--ATTTTAAgc
gi|2 : ---TAT-TA-TCAATATCAATAT-AAAAAAAATATCATGTATACCGGAATGAAATGTAAAAACATTCATAATATAGGTTATCATTTTAAATGAATACTAGGAACGTG-A-AAAGAAGAAAC-ACACAGAAAT-GT-GGACAA--AAAT-GAGAGAGTTGGGGA---TCCCCGCTTGATAAACTCACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACTTACTGTTCAATTTAAAATTTCGACAACCACGTGTAACATACT
gi|3 : ---TAT-CA-CCAACATCAATAT-A---------TTATGTATACCGGAATTAAATGTAATAACATTCATAACGAAGGTTATAATTTTAAATGAATACCATAAACTTG-A-AAAGAAAAAAT-ACACAGAAAT-GT-GAA-AAAAAAAT-GA-AGGA--CGAAA---TCCCCGCTTGATAAACTTACCCTATTGCCCATCATAACAGAAACCAAACAATCGCCCCACATATTGTTCAATTTAAAAACTCGACAGCCACGCTTAACATACTT
gi|4 : ---TAT-CACTTAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATATTATAGGTTA--ATTTTAAATGAATACTATAAACTTG-A-TAAGAAGAAAC-ACACAGAAAT-GT-GAA-CA--AAATGGA-AGGG--GGGAAATTTCCCCGCTTGATAAACTTACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACATTATGTTAAAGTTAAAATTt
gi|5 : AATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAATTTATTTAGT--TTAAATATATTTTACCA-TGT-TTGT-------TA----CATATATCAACA---TAATAAACAGATGCATATAAAATGATAACAAAT--ATAT--A--ACATATACAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCCCTCCA----ATGTG-GCGGTATAAATGT-A----------CATGTTTCCAGGGTTGAAAat
gi|6 : ATATTTACAT--ATGAAATAAGGAAATGGATATAACTACTAACTTAA-AACAACATTAGTTACAGCTCTCTCCAATTTAA-CT-TTAATATTGATAT-A---------TTG-GTTTATCGGAATGAAATTAAAAAATATTTATAATATAAGTGA--ATTTGAAAAGAATAATAGAAACTTG-A-AA-----TAAC-ACACA-AAACGGT-GAA-AA--A
gi|7 : -TCAATATTAAAGT-A---------TTATGTATACCGAAATTAAATGTAAAACCGTTT-TAA-ATAGACTG--ATCT--------------AAATTTT-A-AAATTATAAACTGCAGAGAAAC-GT-GAA-AT--AA---GA-A-AG--GGGAA---CCCCAGCTTGATAATCATGTCATTTCGTCAATCTCTAT
gi|8 : ct---TAT-CA-ACAATATCAATATCA---------TTACATATACTGGAATTAAATGTAATAACATTTATAATATAGCTGA--ATTTTAAAAGAGTAATAGAATCTTGAA-AAAGAAGAATC-ACGCATAAAT-GCGGAA-AA--AAAT-GA-AGGA--GAG
gi|9 : ATTTATATAGTGTTCAAACATATTCTAT-AACATAT-GTAACAATATAGAGACATATA-----AAATTAACAA-C-AGTG-ACGTGATA-----ACAAATT-ATAT--A--ACGTATGCAAATGTAATGAACTAC-AAGTTAT-A
blockSeqs : . . GTT A . GT TAACATATGTAACAATATAGAGACATATAAAATTAACAACAGT C TGATA A TT ATG C T T ATT G C C AAAAAAATA TC G A A A G T A G G C AA G G TT ATT A A T G
blockSeqs : . CCATGTTTGTTACATATATCAACATAATAAACAGAT . . T T A T . . . . . . . TA C A A A . . G . . . . . . . . A A T C
blockSeqs : A . A A . . . . . . . . T T C . . . G . . . . . . . . T T T G
blockSeqs : A T . . . . . . . . T T C . . . G . . . . . . . . A A A T
blockSeqs : . . . . . . T T C . . . G . . . . . . . . T T T
blockSeqs : . . . . . . T A A . . . T . . . . . T
blockSeqs : . . . . G A A . . . .
blockSeqs : . T . . . .
blockSeqs : . .
blockSeqCons : A****
originalCons : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-A-CGT-T-GT-------TA----CATATA-----A---TAACAA-C-GNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
finalCons : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-A-CGT-T-GT-------TA----CATATA-----A---TAACAA-C-GNCGCACGTAAAA-----ACANATTTATATA----ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTTTGTGTGAATGTATATGTTTACCGGGTTGATAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 222 11 11 9999999999999999999999999999999999999999999999999999 33333 11 11111 111 222222222 11 111
lowQualScore : 88 5 111 1 88 88 0000000000000000000000000000000000000000000000000000 6 33333 1 22 33333 1 8 8 000 5 5 5 000000000 0 0 11 4 2 2 8 4 5 4 5 5 5 77 6 6 99 000 1 1 3 3
lowQualScore : .. . ... . .. .. .................................................... . ..... . .. ..... . . . ... . . . ......... . . .. . . . . . . . . . . .. . . .. ... . . . .
lowQualScore : 00 0 000 0 55 33 3333333333333333333333333333333333333333333333333333 7 33333 0 55 00000 4 0 0 000 7 0 0 000000000 3 6 00 6 6 6 9 4 0 5 7 7 7 99 7 7 22 000 0 0 5 2
consensus : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-A-CGT-T-GT-------TA----CATATA-----A---TAACAA-C-GNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
Reference ( family-495 ) : NAATTAGTTTCACAGAAGTTTGANATTTAACGTTGGATTTATTTAGT--TTAAACATATTTTAC-A-CGT-T-GT-------TA----CATATA-----A---TAACAA-C-GNCGCACGTAAAA-----ACANATTTATAT--A--ACATACGCAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATAATATAGGTTA--ATTTTAAANGAATANTAGAAACTTG-A-AAAGAAGAAAC-ACACAGAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTACCCTGTTGCCCATCNCAATAGAAACCANACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGCCACGCGTAACATACTT
gi|1 : AATTAGTTTCACAGAA---TGATATTTAACATTGGATATGTTTAGT--TTAAACATGTTTTA--------T-G----------------------------------A-C-TTCGCACGAAAAT-----ACATATTTATATGAA--AAATACGCAAATGGATTGAACTAT-AAGTTAT-AATAACATTGGTTACAGTTCTCTCCA---TAT-CA-TCAATATCAATAT-A---------TCTTGTATACCGGAATGAAATGTAATTACATCCATAATATAGATTA--ATTCGAAATGAATACTCGAAACTTG-A-AAAGAAGAAAC-ACACATAAAC-GT-GAA-AA--AAAT-GA-AGGG--GGGAA---TCCCCGCTTGATAAACTTATCCGGTTGCTCATCTCACTAGAAACCATACAATCGCCCCAAATACTGTTCAAATTAAAA-TTCGACAGCCCCGCATGACACACTT
gi|10 : g---TCCTCGCTTGATAAACTTGCCCTGTTGCCCATCACAATATAAACCAAACAATCGCCCCACATACTGTTCAATTTTAAATTTCGACAACCACGCGTATCATACTT
gi|11 : ---TCCCCGCTTGATTAATTAACCATGTTGCCCATCATAATAGAAACCAAACAATCGCCCCACATACTGTTCAATTTAAAATTTCGACAGTCACGCCTAACATACTTt
gi|12 : TGTATACCTGGATTAAATATTTTAACATTCATGATATAGGTGA--ATTTGAAAAGAATAATAGAAACCTGAA-AAAGAAATAAC-ACTCAAAA
gi|13 : tttATATCTATCG-AATGAAACATAACAACTTCTACAATATAGGTGA--ATTCCAAAAGAAAAATAGCAACTTG-AGAAAGAAGAtg
gi|14 : AC--A--ACACACATAAATGGATTACACTAC-ATGTAATTAACAACATTAGTTACAGTTC
gi|15 : CCGGAATGAAATGTAATAAAATTCATAATATAGGTTA--ATTTTAAgc
gi|2 : ---TAT-TA-TCAATATCAATAT-AAAAAAAATATCATGTATACCGGAATGAAATGTAAAAACATTCATAATATAGGTTATCATTTTAAATGAATACTAGGAACGTG-A-AAAGAAGAAAC-ACACAGAAAT-GT-GGACAA--AAAT-GAGAGAGTTGGGGA---TCCCCGCTTGATAAACTCACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACTTACTGTTCAATTTAAAATTTCGACAACCACGTGTAACATACT
gi|3 : ---TAT-CA-CCAACATCAATAT-A---------TTATGTATACCGGAATTAAATGTAATAACATTCATAACGAAGGTTATAATTTTAAATGAATACCATAAACTTG-A-AAAGAAAAAAT-ACACAGAAAT-GT-GAA-AAAAAAAT-GA-AGGA--CGAAA---TCCCCGCTTGATAAACTTACCCTATTGCCCATCATAACAGAAACCAAACAATCGCCCCACATATTGTTCAATTTAAAAACTCGACAGCCACGCTTAACATACTT
gi|4 : ---TAT-CACTTAATATCAATAT-A---------TCATGTATACCGGAATGAAATGTAATAACATTCATATTATAGGTTA--ATTTTAAATGAATACTATAAACTTG-A-TAAGAAGAAAC-ACACAGAAAT-GT-GAA-CA--AAATGGA-AGGG--GGGAAATTTCCCCGCTTGATAAACTTACCCTGTTGCCCATCTCAATAGAAACCATACATTCGCCCCACATTATGTTAAAGTTAAAATTt
gi|5 : AATT--TTTTA-AGAAGTTTAAAATT--ATGTTGAATTTATTTAGT--TTAAATATATTTTACCA-TGT-TTGT-------TA----CATATATCAACA---TAATAAACAGATGCATATAAAATGATAACAAAT--ATAT--A--ACATATACAAATGGATTGAACTAC-AAGTTAT-AACAACATTAGTTACAGTTCCCTCCA----ATGTG-GCGGTATAAATGT-A----------CATGTTTCCAGGGTTGAAAat
gi|6 : ATATTTACAT--ATGAAATAAGGAAATGGATATAACTACTAACTTAA-AACAACATTAGTTACAGCTCTCTCCAATTTAA-CT-TTAATATTGATAT-A---------TTG-GTTTATCGGAATGAAATTAAAAAATATTTATAATATAAGTGA--ATTTGAAAAGAATAATAGAAACTTG-A-AA-----TAAC-ACACA-AAACGGT-GAA-AA--A
gi|7 : -TCAATATTAAAGT-A---------TTATGTATACCGAAATTAAATGTAAAACCGTTT-TAA-ATAGACTG--ATCT--------------AAATTTT-A-AAATTATAAACTGCAGAGAAAC-GT-GAA-AT--AA---GA-A-AG--GGGAA---CCCCAGCTTGATAATCATGTCATTTCGTCAATCTCTAT
gi|8 : ct---TAT-CA-ACAATATCAATATCA---------TTACATATACTGGAATTAAATGTAATAACATTTATAATATAGCTGA--ATTTTAAAAGAGTAATAGAATCTTGAA-AAAGAAGAATC-ACGCATAAAT-GCGGAA-AA--AAAT-GA-AGGA--GAG
gi|9 : ATTTATATAGTGTTCAAACATATTCTAT-AACATAT-GTAACAATATAGAGACATATA-----AAATTAACAA-C-AGTG-ACGTGATA-----ACAAATT-ATAT--A--ACGTATGCAAATGTAATGAACTAC-AAGTTAT-A
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTTTGTGTGAATGTATATGTTTACCGGGTTGATAAT