lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111 1111111111
lowQualScore : 1 1 4444444444444444444 222 111111 222222 222222 33333333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 222222222 111111111 888888888888888888 33333 4444444444444444444 1 11 3333333333333333333333 11 11 222222 222 1 1 44444444 22 4444444 33333 1 22 22222 2 222 0000000000 1 1 1
lowQualScore : 5 3 0 66 8 8888888888888888888 9999 9999 999 4 4 222222 66 4 777777 8 4 000000 66 0 11111111 9 99999 2 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 1 4 0 999999999 6 111111111 5 33 5 1 1 000000000000000000 0 22222 6 2222222222222222222 2 66 2 9999999999999999999999 88 88 4 666666 7 333 9 2 0 2 4 44444444 4 4 33 8 4444444 55555 7 6 2 66 55555 4 3 0 2 111 1111111111 6 6 6 6 7 5 7
lowQualScore : . . . .. . ................... .... .... ... . . ...... .. . ...... . . ...... .. . ........ . ..... . ................................................................................................................... . . . . ......... . ......... . .. . . . .................. . ..... . ................... . .. . ...................... .. .. . ...... . ... . . . . . ........ . . .. . ....... ..... . . . .. ..... . . . . ... .......... . . . . . . .
lowQualScore : 0 9 5 11 4 6666666666666666666 4444 4444 444 4 4 888888 11 3 666666 9 2 777777 11 1 22222222 0 77777 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 9 7 4 888888888 5 888888888 0 33 0 7 7 222222222222222222 8 00000 0 2222222222222222222 3 00 5 0000000000000000000000 00 33 0 000000 0 333 5 8 0 0 0 55555555 0 2 33 3 5555555 00000 0 0 5 00 00000 0 0 0 5 555 0000000000 0 0 0 0 0 0 0
consensus : AAAGTTATCCATGAACGGTCACCTTTACAAA--TATCATT--A-------------GATGCCTGA----ATGTC----CAT--TTT-T-AGCAT------GT--TTAGAACTG--AC-TTA-TTTACTAG-----GC--ACTATCTGAGT-CAN-TGTCCTATTGATTCGT---TTACGTAA-----AAAT-G-CCTTTA-T-------ATATAT-G------ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------AAGCAATCACGCGTTACTATC---GA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G-TAAATC-ATAGTTCCTTTTCAAGTCTA-TAGTTCGGTCCGTTGGT-GCTTTACNTCAAGCAAAANCAATACGNTGATGTANANANCTGTTACAAGTATCTTCGCANTTTTTCT--TGTNT--NTA-TTATAAAACA---GCTATTTGCTTTNACTG-AAGTCANTGATTAAAAA--CAATTCTTCCNCGGGAATGNCTATTGACANGAAAAACACAANCCGGCTGATCGANACGCGTTCATNAGCCNTNCCGCTNGAATGATAGTT----TCTTAAACTTCATTGAGAGTAAATATGTGTTTAT
Reference ( gi|2 ) : AAAGGTATCCATGAACGGTGACCTTTACAAA--TAGCATT--A-------------TACGTCTGA----ATGTC----CAT--ATT-T-AGCAT------GT--TTAAAACTG--AC--TA-TCTACTAG-----GC--ACTATCTGAGT-AAC-TGTCCCATTGATTCGT---TTACGTAA-----AAAC-G-CCTTTG-TA------ATATAT-G------ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA-----TATCAAGCAATTACGCGTTATTATA---GA--TTTTGACTATTTGATTTCTT---TTT-GCTTCTACACAGCATGTTTAA---G-CAAATT-ATGTTTCCTTTTCAAGCGTT-TAATTCAATCTGTTGGT-GATTCAGGTCAAACAAAAGTAATATACTGATGT-GACACCT-----AA----TTTCGCAGTTTTTCT--TGTTT--GTA-TTATAAAAAA---GCTATTTGATTTCACTG-AGGTCAATGATAAAAAAAACAATTCTTCCTCGGGGATGTATTTTGACCCGAAAAACACAAA--AATTGAACAAGACAAATTC-TTA-TCATTCC-CTGGAATGATAGTTGTAACCTCTGACCTTACTGAAAGTAATTATTTGTATAT
gi|4 : AAAGTTCTCCATGAACAGTCACCTGTGCAAA--AAGCATT--A-------------GTTGTCTGG----ATGTC----CAT---TT-T-AACAT------GG--TTAAAAATG--AC--TA-TTTACTAAGGCT-GC--ACTATCTGAGC-CGG-TGTCGTATCAATT---------CATAA-----GAAT-GACCTTTA-T--------TAAAT-G------AAACT------TGTAAA---TGAACA------T------TTG---GTATTAGCT-------GGGG------AGCAAGCAA----ACGTT------------------ACTATTTGAGACCCT---TTT-GCATCTACACAGAACGTTTTAGGGG-TAA----ATAGCTCTTTTTCAAG
gi|1 : ttttaacgaatctgtgaaacaaatagactggatcagtccatgtacccatcgaacttttagaaaaatagatgtacagcaaaaaaagtgtgcattgacagaattcagtacaatcaatctgaaaggagtctactttcctacatttaagaagcaagtatgatacacatattatcttgttatttgctcactgatcgaccttatagatcataagAAAGTTATCCATGAACGTTCATCTTTATACA--TGTCATT--A-------------GATACCTTA----ATGCC----TAT---TT-T-AAAAT------GT--TTAGAACTGTAAA--TA-TTCAATAG-----ATTAATTA-CGAAAG-AAC-T-TCC--TTTATTC-----TTAAATAAACAATAAACTG---TTTGATATTAAATATATAT-G------ACA--------TAAAAA---TGAACAA-----TAATGA-TTG---GT------T-------TGG----------AAACAATCGCGCtctataggtcagaatgtactttgtgtaaaatgaaaata
gi|7 : ggaatcaactttaaaagttacgtcaacggtgcatacgtcttgttatttgcaaaattatatacatttattcataagaatcatattaaagAAAGTTAGCTCTGAAGGGTCACATTTACAAA--AACCATT--A-------------GTTGTCTGA----ATGTC----GAT--TTT-C-AGCAT------GT--TTAGAATTG--AT--T--TTTAATAG-----GC--ACATTCTGAG-------------TCGATTTGT---TCTGGGAA-----TAA-------TTG-CA------TTTTAT-T------ACATTTTTTTTTTTAAA---TGCAC----------------A---GT------T-------TTGA---------AGGTAATCATGGGTTACTA-----------TCAAATATTTGGTTCCTTTTGTTT-GTTTCTACAAAGCATGT----------AAATT--TATTTATTTTTT-----TTATAGTTCAGTC--TTGAT-GCTTttccattttgcttatacacaaaacaattcaagtctaggttagtgctttactaaatgttaagcatctgttacacgccgtagataatttgtaatctatgtaattataaaaaaaaagctatttgattttactgaagtcattgattcaaacaattcttcgacgggaacgacttttgacaagaaaaatacaacagctgatcgacatgagttcttagtctttcccttggatagtttcttaaacttcattgagagtaaatatgtgtttatgtataatcacaattcatctgccatacaaaaattaagact
gi|6 : gaacttatagaaatatagataaatataagtacagcatccttgtgtgtgcattaccagaattcggcataatcaacaaagaagggatatatttctctacaattaggatgcatatgtcctgttatttgcaaaaattctgttcatttacatgatattatatgaatcataatTATACACAAATGTTCACCATAACAAACATAG-ATC--G--------------ATGCCTGA----ATGTT----CAA--TTT-T-AGCCT------GT--TTAGAATTT--ATATTAATCTATCAG-----GC--AATATCTAATT-CAC-AATCCTATTGATTCTT---CCATGTAAT----AAAT-G-CCTGTA-TT------ATACAT-GTGTATAACT--------TATAAA---TGAAC-------TGTTTTATTG---GT------T--------GGA-----GAGCAAGC----ATGTGTTATAATC---GG--TTTT-AC------------T---TTT-GCT--AACAAAGTATGTTTGA---G----GTTAATAGTTCCTTCTTAAGTCTA-TAGTTTGTTCCGT--GT-GTTTTATATCAAACAAAACCGATACGATGATGT-TAGAC-------AA-------CACATTTTTTCG--TGt
gi|9 : aactggaaggaatacatttccttactgttgggaagcaagtttacctcaaagtgaggatgcatttgccttgttgtttgcaatgttctgtacatagatcatcagacaatTATCCATGAAACATTACCGTTGAAAA--TATAATT--T-------------GACGCCTGA----ATATTGTAACATG-ATTAT-AAC---------T--TTAGAGCTG--ACTTTA-TTTACTAG-----TC--ACCATCTAATT-CAG-TGTCGTAATGATTTGT---TTGCAAAAT----AGAT-G-TCTTTA-TT------ATAAAT--------ACT--------CAAGAA---TCCAC-------T------TTT---GT------C-------G
gi|11 : aaaaataaatgaagttcatcacaaaattgcattaacggaattcaatataaccaatccagaaacagaagcaagtgacgtacaacatttggattatttgacttaatatttgttacagtatggatTGTCCATGAACGGCAACCTTTACAAA--TAACATT--ta
gi|5 : tagataaatagaagtacagaaataaaatgtaatttgattaagtataatcaatctaaaagaagtctagtttcatacatttaagaagcaagacatttcaaattcaggatgcttttttttgtatttgcgatattttgtacattagagatcatgagtaaatTGAACAGTCACCTTCACAGA--TATCATT--AAATCTAGATGAATTA-GTCTGA----ATGTC----CACCAATT-TGAACAT------GT--TTAGAACTG--AT--GACTTTATT--------T--ACTATCCGAGC---T-TGTACCAT--ACTCATGTATTACGTTA-----ATAG-G-CCTTTA-TA------AT---T-G------ACAATT-----TATAAA---TGAACAGTTGGTT------TTG---GC------T-------GGGA----------AGCAATCAGGCGTTACCATC---AA--TTTTAACTATTTGAGCCCTT---TTT-GCTTCCACATTGTACGTTTGA---GATAAA---A-GTTCATTTTTCAAGTCTA-TAGTTCAG--TATTGATGGATT---GCCAA--AAACG-AATATACTGATGTAAACAGCTGTTACAAGTATCTTCGCAG-ATTTCT--TGTATACATA-TTTTAAAACA---GTTATGTGTTTTCACTA-AGGTCAATAAT---TAAAACTATTCTTCCTCCGGAAT
gi|8 : aaagcaagaatttcacaaatttaggatgcatttgtcttatttgcgcaattgtatacattataggtcagtagaaactACGGTCACGAATACAAA--TATCGTTCAA-------------TAC--CGGA----ATGTC----CAT--TTT-T-AGCAT------AT--TTGGTATTG--ACCTTA-TTTACTAG-----TC--AGTAACTGTGTCAACGCGTCCTATTGATTCGG---TAACATAAG----AAAT-G-CCTTTA-TC------ATA-ATCA------ATT--------TATAAA---TTAGC-------T------------GT------T-------CCGACCGACTTTGAAGTAATTACGTGTTTTTATC---AA--TTTTCACTATTTTATTT-TT---TTT-GCTCCTA
gi|3 : ctgcatttgagttagttagtatgcatttgccttgatttgaaaaattctggacattcatacgaaaattatcgaattTACAAA--TATCGTT--C-------------GATGTCTGAGTGAATGTT----TAT---TT-T-AGCATACAATTGTAGTTAGTATTGTTAT--TA-TTTGCTAT-----GC--AGCATCTGAAT-CAG-TTTCCTATTGATTCGT---TTACGTAA-----GAA---------------------ATAT-G------A-A--------T-TAACTGTTGTAT-------T------TT-----T------TTATTTGCGGGA---------AAGCAATCAAA---TATTATAAGCAG--TTTTGGCTGTTTGATTCCTT---TTTCGATTTTACTCCGTACATTTTA---G-tct
gi|10 : tttttaataacttgtgagaaaatctgatatttgaatgaccatagttcagtagatgtattcattgaacttcaactgtagaaaagtaggaaaatacaagtaaagcaaaaacagtttgtacagacagaattcagtaaaatttacctcgaaggagtatatttccctacatatgagaagtaacaagtaattattaaaatagaaaattaatatatttataaggatgcatttgctttgtatttcattctttatagatcaaagaaaataatcaattgcggttacaaaCTGA----ATGTC----TAT--TGT-T-AGCAT------GT--TTAGAACTG--ACGTTA-TTAACTAGACACGGC--ACTATCTGAGG-CAA-TGTCCTATTGATTCGT---TTAC-------------------------------ATAT---------------------TATAAA---TGA----------------TCA---GT------T-------GATA------AT--GGCTATAACGCGTTACTGTC---AA--TTTTGACTATTTGA-TTCTG---TTT-ACTTCTGTACCGTACGTATAG---G-TGAA-C-A---TTCCTTTACAAGTATG-TAGATCAA-CTG-TGGT-GCTTTACTTACAGCATAAATAATAg
gi|15 : ATAAA---TCAAC-------TGTT---TTGTAGGT------T-------GGGA----------AGTAATCACGGGTTATTGTA---GAGATTTTGGCTATTTGATTCCCA---TTT-GGTTCTATATAGTACGTTT-------CAGATCAATAGTTCCTTTTC
gi|13 : actaTTTTCTAATTTTT--TTT-TTATTAACCA---GCTATTTGCTTT-ACTGGAATTCAATGATTAAAA---CAATTCTTTCACGGGGATGGCTACTAACAC-----ACACAAACCGGTTGATCGAGAC-CATTCATGA-CCATGCCGCTGGAATAATAGT
gi|1 : T--GTAATTATAAAAAAAAAGCTATTTGATTTTACTG-AAGTCATTGATTCAAA---CAATTCTTCGACGGGAACGACTTTTGACAAGAAAAATACAAC--AGCTGATCGACATGAGTTC-TTAGTCTTTCC-CTTG---GATAGTT----TCTTAAACTTCATTGAGAGTAAATATGTGTTTAT
gi|16 : ggaatcaactttaaaagttacgtcaacggtgcatacgtcttgttatttgcaaaattatatacatttattcataagaatcatattaaagaaagttatccatgaacgttcatctttatacatgtcattagataccttaatgcctattttaaaatgtttagaactgtaaatattcaatagattaattacgaaagaacttcctttattcttaaataaacaataaactgtttgatattaaatatatatgacataaaaatgaacaataatgattggtttggaaacaatcgcgcttccattttgcttatacacaaaacaattcaagtctaggttagtgctttactaaatgttaagcatctgttacacgccgtagataatttgtaatctaTTTGCTTTAACTG-AAGTCATTAATAAAAAA--CAACTCTTCCTCGCGCATGTTTATTGACgtataatcacaattcatctgccatacaaaaattaagact
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ACAACAAAAAACAACAGTTGATCGCGATGAATTCACAGCCAATCTCTTGGATTTTGTTTTAGCTGCTGTTACTATTGGTCTCAATGAAAAAAAACATGTGTTCATTGCATACACAAATTTCACTTTTCATACAAAAGCAAGAC
Unaligned ( gi|14 ): ATCAGTCTGTGTATCCATGGAACTTAGAAAAATAGATAAATAGAAGTACAGCATAAAGCGTGCATTGACAATATTCAGTATGTTTCAAGCTGGGATGCATGTCTTGTTATATGAAAAATTCT
Alignments
lowQualScore : 222222222222 111 111111 333333333333 222222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3333333333333333333 22222 333333 111 111 11111 22222222222 1 1111 22 111 1111 1 22 111 333333 2 4444
lowQualScore : 777 1 1 222222222222 8888 8888 222 4 111111 55 000000000000 111111 1 55 777 1 777 1 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 00 8888888 4 33 0 4 777 4 0 8888888888888888888 5 1 55555 1 111111 1 333 0 333 55555 1 1 55555555555 3 88 4444 33 1 444 2 3 8 8 1 8888 0 1 1 11 4 77 99 0 0 1 999 000000 1 1 3 1 7 2222 4 4 2 4
lowQualScore : ... . . ............ .... .... ... . ...... .. ............ ...... . .. ... . ... . ..................................................................................................................... . .. ....... . .. . . ... . . ................... . . ..... . ...... . ... . ... ..... . . ........... . .. .... .. . ... . . . . . .... . . . .. . .. .. . . . ... ...... . . . . . .... . . . .
lowQualScore : 000 2 9 888888888888 5555 5555 555 7 555555 55 666666666666 000000 6 55 999 6 000 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 66 7777777 1 22 7 1 000 0 1 7777777777777777777 0 6 00000 0 888888 0 222 8 000 22222 0 0 00000000000 3 33 8888 88 0 888 5 2 8 0 0 0000 6 0 8 22 0 77 00 7 7 0 333 777777 0 0 3 0 3 5555 0 0 5 0
consensus : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GCGTCCTATTGATTCGT---TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G--TAAATC-ATAGTTC-CTTTTCAAGTCTATAGTTCAGTCCGTTGGTGCTTTACNTCAAACAAAAAC-AATATACTGATG-T-AGACANCTGTTACA-GCATCTTCG-CAGTTT-T--TCTA-TGTNT--NTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTC-TTA-TCATTCC-CTGGAATGATAGTTGTAACCTCNGACCTCACTGAGAGTAANTATNTGTNTAT
Reference ( family-4948 ) : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCATTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--NTGTCCTATTGATTCGT---TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G--TAAATC-ATAGTTC-CTTTTCAAGTCTATAGTTCGGTCCGTTGGTGCTTTACNTCAAGCAAAANC-AATACGNTGATG-T-ANANANCTGTTACAAGTATCTTCG-CANTTT-T--TCT--TGTNT--NTATTATAAAACAGCTATTTGCTTTNACTG-AAGTCANTGAT--TAAAAACAATTCTTCCNCGGGAATGNCTATTGACANGAAAAACACAANCCGGCTGATCGANACGCGTTCATNAGCCNTNCCGCTNGAATGATAGTT----TCTTAAACTTCATTGAGAGTAAATATGTGTTTAT
gi|1 : AAAGTTATCCATGAA---CGTTCATCTTTATACATGTCATTAGAT------------ACCTTA----ATGCC----TAT---TTT-AAAAT------GT--TTAGAACTGT-A-A----AT-ATTCAATAG-------ATTAATTACGAAAGA--ACTTCCT-TT-ATTC-----TTAAATAA-ACAATAAACTG-TTTGATATTAAAT-A-TATAT-G----ACA--------TAAAAA---TGAACAATAA--TGA----TTG---GT------T-------TGGA---------A-A-CAATCGCGC---------------------------TTCCAT---TTT-GCTTATACACA-----------------AAACA-AT----------TCAAGTCTA-------G---GTTAGTGCTTTACT-------------AA-------ATG-TTAAGCATCTGTTACACGC--CGTAGATAATTTGTAATCTA-TGTAA--TTATAAAAAAAAAGCTATTTGATTTTACTG-AAGTCATTGAT--TCAAA-CAATTCTTCGACGGGAACGACTTTTGACAAGAAAAATACAA--CAGCTGATCGACATGAGTTC-TTAGTCTTTCC-CTTG---GATAGTT----TCTTAAACTTCATTGAGAGTAAATATGTGTTTAT
gi|10 : ggaatcaactttaaaagttacgtcaacggtgcatacgtcttgttatttgcaaaattatatacatttattcataagaatcatattaaagCTGA----ATGTC----TAT---TGTTAGCAT------GT--TTAGAACTG--A-CG---TT-ATTAACTAGACACGGCACTA--TCTGAGGCA--ATGTCCTATTGATTCGT---TTAC----------------------------------ATAT-----------------TATAAA---TGA----------------TCA---GT------T-------GATA---------ATGGCTATAACGCGTTACTGTCAA--TTTTGACTATTTGATT-CTG---TTT-ACTTCTGTACCGTACGTATAG---G--TGAA-C-A---TTC-CTTTACAAGTATGTAGATCAA-CTG-TGGTGCTTTACTTACAGCATAAAT-AATAgtataatcacaattcatctgccatacaaaaattaagact
gi|11 : AAATTGTCCATGAA---CGGCAACCTTTACAAATAACATT
gi|13 : tagataaatagaagtacagaaataaaatgtaatttgattaagtataatcaatctaaaagaagtctagtttcatacatttaagaagcaagacatttcaaattcaggatgcttttttttgtatttgcgatattttgtacattagagatcatgagtTT-T--TCTAATTTTT--TTTTTATTAACCAGCTATTTGCTTT-ACTGGAATTCAATGAT--TAAAA-CAATTCTTTCACGGGGATGGCTACTAACAC-----ACACAAACCGGTTGATCGAGAC-CATTCATGA-CCATGCCGCTGGAATAATAGT
gi|15 : ATAAA---TCAAC-------TGTT---TTGTAGGT------T-------GGGA---------A--GTAATCACGGGTTATTGTAGAGATTTTGGCTATTTGATTCCCA---TTT-GGTTCTATATAGTACGTTTCA---G-----ATCAATAGTTC-CTTTTC
gi|16 : actaTTTGCTTTAACTG-AAGTCATTAAT--AAAAAACAACTCTTCCTCGCGCATGTTTATTGAC
gi|2 : AAAGGTATCCATGAA---CGGTGACCTTTACAAATAGCATTATAC------------GTCTGA----ATGTC----CAT---ATTTAGCAT------GT--TTAAAACTG--A-C----T--ATCTACTAG-----GCACTA--TCTGAGTAA--CTGTCCCATTGATTCGT---TTACGTAA-A-----AA-CG-CCT----TTG--T-AATATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGATATC-----A-AGCAATTACGCGTTATTATAGA--TTTTGACTATTTGATTTCTT---TTT-GCTTCTACACAGCATGTTTAA---G--CAAATT-ATGTTTC-CTTTTCAAGCGTTTAATTCAATCTGTTGGTGATTCAGGTCAAACAAAAGT-AATATACTGATG-T--GACACCTA--------AT-TTCG-CAGTTT-T--TCT--TGTTT--GTATTATAAAAAAGCTATTTGATTTCACTG-AGGTCAATGATAAAAAAAACAATTCTTCCTCGGGGATGTATTTTGACCCGAAAAACACAAA--AATTGAACAAGACAAATTC-TTA-TCATTCC-CTGGAATGATAGTTGTAACCTCTGACCTTACTGAAAGTAATTATTTGTATAT
gi|3 : ---CGGTTACAAATACAAATATCGTTCGAT------------GTCTGAGTGAATGTT----TAT---TTT-AGCATACAATTGTAGTTAGTATTGTTA------TT-ATTTGCTAT-----GCAGCA--TCTGAATCA--GTTTCCTATTGATTCGT---TTACGTAA-G-----AA---------------------ATAT-G----A-A--------T-TAACTGTTGTAT-------T------TT-----T------TTATTTGCGGGA---------A-AGCAATCAAATATTATAAGCAG--TTTTGGCTGTTTGATTCCTT---TTTCGATTTTACTCCGTACATTTTA---G--
gi|4 : tttttaataacttgtgagaaaatctgatatttgaatgaccatagttcagtagatgtattcattgaacttcaactgtagaaaagtaggaaaatacaagtaaagcaaaaacagtttgtacagacagaattcagtaaaatttacctcgaaggagtatatttccctacatatgagaagtaacaagtaattattaaaatagaaaattaatatatttataaggatgcatttgctttgtatttcattctttatagatcaaagaaaataatcaattgAAAGTTCTCCATGAA---CAGTCACCTGTGCAAAAAGCATTAGTT------------GTCTGG----ATGTC----CA----TTTTAACAT------GG--TTAAAAATG--A-C-----T-ATTTACTAAGGCT-GCACTA--TCTGAGCCG--GTGTCGTATCAATT---------CATAA-G-----AA-TGACCT----TTA--T---TAAAT-G----AAACT------TGTAAA---TGAACA------T------TTG---GTATTAGCT-------GGG----------G-AGCAAGCAAACGTTACTA-------TTTGA------GA--CCCT---TTT-GCATCTACACAGAACGTTTTAGGGG--TAA----ATAGCTC-TTTTTCAAGTCTATAGGTCAGg
gi|5 : ttttaacgaatctgtgaaacaaatagactggatcagtccatgtacccatcgaacttttagaaaaatagatgtacagcaaaaaaagtgtgcattgacagaattcagtacaatcaatctgaaaggagtctactttcctacatttaagaagcaagtatgatacacatattatcttgttatttgctcactgatcgaccttatagatcataagTGAA---CAGTCACCTTCACAGATATCATTAAATCTAGATGAATTAGTCTGA----ATGTC----CACCAATTTGAACAT------GT--TTAGAACTG--A-TGACTTT-ATTTACTA--------------TCCGAGC----TTGTACCAT--ACTCATGTATTACGTTA-A-----TA-GG-CCT----TTA--T-A--AT-T-G----ACAATT-----TATAAA---TGAACAGTTGGTT------TTG---GC------T-------GGGA---------A--GCAATCAGGCGTTACCATCAA--TTTTAACTATTTGAGCCCTT---TTT-GCTTCCACATTGTACGTTTGA---GA-TAAA-----AGTTCATTTTTCAAGTCTATAGTTCAGT--ATTGATGGATTGC------CAAAAACGAATATACTGATG-T-AAACAGCTGTTACAAGTATCTTCG-CAG-AT-T--TCT--TGTATACATATTTTAAAACAGTTATGTGTTTTCACTA-AGGTCAATAAT--T-AAAACTATTCTTCCTCCGGAATaatgtactttgtgtaaaatgaaaata
gi|6 : aaagcaagaatttcacaaatttaggatgcatttgtcttatttgcgcaattgtatacattataggtcagtagaaactAATTATACACAAA---TGTTCACCATAACAAACATAGATCGAT------------GCCTGA----ATGTT----CAA---TTTTAGCCT------GT--TTAGAATTT--A-TA---TTAATCTATCAG-----GCAATA--TCTAATTCA--CAATCCTATTGATTCTT---CCATGTAATA-----AA-TG-CCTGTA-TTA--T-A-CATGT-GTATAACT--------TATAAA---TGAAC-------TGTTTTATTG---GT------T--------GGA---------G-AGCAAGCATGTGTTATAATCGG--TTTT-AC------------T---TTT-GCT--AACAAAGTATGTTTGA---GGTTA-----ATAGTTC-CTTCTTAAGTCTATAGTTTGTTCCGT--GTGTTTTATATCAAACAAAACC-GATACGATGATGTT-AGACAAC
gi|7 : aactggaaggaatacatttccttactgttgggaagcaagtttacctcaaagtgaggatgcatttgccttgttgtttgcaatgttctgtacatagatcatcagacAAAGTTAGCTCTGAA---GGGTCACATTTACAAAAACCATTAGTT------------GTCTGA----ATGTC----GAT---TTTCAGCAT------GT--TTAGAATTG--A-T----T---TTTAATAG-----GCACAT--TCTGAGTC-------------GATTTGT---TCTGGGAATA-----AT-TG-CAT----TT---------TAT-T----ACATTTTTTTTTTTAAA---TGCAC----------------A---GT------T-------TTGA---------A-GGTAATCATGGGTTACTATCAA-------A-TATTTGGTTCCTTTTGTTT-GTTTCTACAAAGCAT---------G--TAAATT--TATTTA-TTTTT----TTTATAGTTCAGTC--TTGATGCTTTacattttttcgtg
gi|8 : gaacttatagaaatatagataaatataagtacagcatccttgtgtgtgcattaccagaattcggcataatcaacaaagaagggatatatttctctacaattaggatgcatatgtcctgttatttgcaaaaattctgttcatttacatgatattatatgaatcataatAAAATTATC---GAATTACGGTCACGAATACAAATATCGTTCAAT------------ACCGGA----ATGTC----CAT---TTTTAGCAT------AT--TTGGTATTG--ACC----TT-ATTTACTAG-----TCAGTA--ACTGTGTCAACGCGTCCTATTGATTCGG---TAACATAAGA-----AA-TG-CCT----TTA--TCA-TA-ATCA----ATT--------TATAAA---TTAGC-------T------------GT------T-------CCGACCGACTTTGA-AGTAATTACGTGTTTTTATCAA--TTTTCACTATTTTATT-TTT---TTT-GCTCCTA
gi|9 : ctgcatttgagttagttagtatgcatttgccttgatttgaaaaattctggacattcatacgTTATCCATGAA---ACATTACCGTTGAAAATATAATTTGAC------------GCCTGA----ATATTGTAACATGA-TTATAAC---------T--TTAGAGCTG--A-C----TTTATTTACTAG-----TCACCA--TCTAATTCA--GTGTCGTAATGATTTGT---TTGCAAAATA-----GA-TG-TCT----TTA--T---TATAtct
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ACAACAAAAAACAACAGTTGATCGCGATGAATTCACAGCCAATCTCTTGGATTTTGTTTTAGCTGCTGTTACTATTGGTCTCAATGAAAAAAAACATGTGTTCATTGCATACACAAATTTCACTTTTCATACAAAAGCAAGAC
Unaligned ( gi|14 ): ATCAGTCTGTGTATCCATGGAACTTAGAAAAATAGATAAATAGAAGTACAGCATAAAGCGTGCATTGACAATATTCAGTATGTTTCAAGCTGGGATGCATGTCTTGTTATATGAAAAATTCT
Alignments
lowQualScore : 222222222222 111 111111 333333333333 222222 11111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3333333333333333333 33333333 222222 11 1 33333333 1 1111 11 3333 11 11 1 11111 1 1111 1111 11 4444444
lowQualScore : 777 1 1 1 222222222222 8888 8888 222 4 111111 55 000000000000 111111 1 55 11111 0 4 1 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 00 8888888 4 33 0 4 777 4 0 8888888888888888888 5 1 55555555 000000 33 99 0 3 1 44444444 6 3 4444 77 0 333 1 1 8 8 1 2222 1 1 11 1 6 11 22 6 0 0 44444 0 0 0000 7777 1 88 3333333 3 0 1 1 1
lowQualScore : ... . . . ............ .... .... ... . ...... .. ............ ...... . .. ..... . . . ..................................................................................................................... . .. ....... . .. . . ... . . ................... . . ........ ...... .. .. . . . ........ . . .... .. . ... . . . . . .... . . .. . . .. .. . . . ..... . . .... .... . .. ....... . . . . .
lowQualScore : 000 2 2 9 888888888888 5555 5555 555 7 555555 55 666666666666 000000 6 55 55555 7 0 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 66 7777777 1 22 7 1 000 0 1 7777777777777777777 0 6 44444444 888888 00 55 0 2 0 77777777 7 3 8888 00 2 222 0 0 2 0 4 8888 4 4 22 0 5 88 55 5 0 8 55555 8 0 2222 0000 0 33 3333333 7 7 0 0 0
consensus : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GTGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G--TAAATC-ATAGTTC-CTTTTCAAGTCTATAGTTCAG--TC-GTTGGTGCTTTACGT-AAACAAAAAT-AATATACTGATG-TAGACANCTGTTAC-A-CATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTC-TTA-TC--ATTCC-CTGGAATGATAGTT-TAGCCTCTG--AC-------CTCANTGAAAGTAAATATGTGTTTAT
Reference ( family-4948 ) : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GCGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G--TAAATC-ATAGTTC-CTTTTCAAGTCTATAGTTCAG--TCCGTTGGTGCTTTACNTCAAACAAAAAC-AATATACTGATG-TAGACANCTGTTAC-AGCATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTC-TTA-TC--ATTCC-CTGGAATGATAGTTGTAACCTCNG--AC-------CTCACTGAGAGTAANTATNTGTNTAT
gi|1 : AAAGTTATCCATGAA---CGTTCATCTTTATACATGTCATTAGAT------------ACCTTA----ATGCC----TAT---TTT-AAAAT------GT--TTAGAACTGT-A-A----AT-ATTCAATAG-------ATTAATTACGAAAGA--ACTTCCT-TT-ATTC---TTAAATAA-ACAATAAACTG-TTTGATATTAAAT-A-TATAT-G----ACA--------TAAAAA---TGAACAATAA--TGA----TTG---GT------T-------TGGA---------A-A-CAATCGCGC---------------------------TTCCAT---TTT-GCTTATACACA-----------------AAACA-AT----------TCAAGTCTA-------G-----GTTAGTGCTTTACT----------A--AATGT--------TAAGCATCTGTTAC-A-CGCCGTAGATAATTTGTAATCTA-TGTAATTATAAAAAAAAAGCTATTTGATTTTACTG-AAGTCATTGAT--T-CAAACAATTCTTCGACGGGAACGACTTTTGACAAGAAAAATAC-AA-CAGCTGATCGACATGAGTTC-TTAGTC--TTTCC-CTTG---GATAGTT----TCTTAA--AC-------TTCATTGAGAGTAAATATGTGTTTAT
gi|10 : ggaatcaactttaaaagttacgtcaacggtgcatacgtcttgttatttgcaaaattatatacatttattcataagaatcatattaaagCTGA----ATGTC----TAT---TGTTAGCAT------GT--TTAGAACTG--A-CG---TT-ATTAACTAGACACGGCACTA--TCTGAGGCA--ATGTCCTATTGATTCGT-TTAC----------------------------------ATAT-----------------TATAAA---TGA----------------TCA---GT------T-------GATA---------ATGGCTATAACGCGTTACTGTCAA--TTTTGACTATTTGATT-CTG---TTT-ACTTCTGTACCGTACGTATAG---G--TGAA-C-A---TTC-CTTTACAAGTATGTAGATCAA---CTG-TGGTGCTTTACTTACAGCATAAAT-AATAgtataatcacaattcatctgccatacaaaaattaagact
gi|11 : AAATTGTCCATGAA---CGGCAACCTTTACAAATAACATT
gi|12 : tagataaatagaagtacagaaataaaatgtaatttgattaagtataatcaatctaaaagaagtctagtttcatacatttaagaagcaagacatttcaaattcaggatgcttttttttgtatttgcgatattttgtacattagagatcatgagtACAAAAAACA---A-CAGTTGATCGCGATGAATTC-ACA-GCCAATCTC-TTGGATT--TTGTTTTAGCTGCTGTTACTATTGGTCTCAATGAAAAAAAACATGTGTTCAT
gi|13 : acaTT-T--TCTAATTTTTTTTTTATTAACCAGCTATTTGCTTT-ACTGGAATTCAATGAT--T-AAAACAATTCTTTCACGGGGATGGCTACTAACAC-----ACACAAACCGGTTGATCGAGAC-CATTCATGA-CC--ATGCCGCTGGAATAATAGTtgcatacacaaatttcacttttcatacaaaagcaagac
gi|15 : ATAAA---TCAAC-------TGTT---TTGTAGGT------T-------GGGA---------A--GTAATCACGGGTTATTGTAGAGATTTTGGCTATTTGATTCCCA---TTT-GGTTCTATATAGTACGTTTCA---G-----ATCAATAGTTC-CTTTTC
gi|16 : actaTTTGCTTTAACTG-AAGTCATTAAT--AAAAAACAACTCTTCCTCGCGCATGTTTATTGAC
gi|2 : AAAGGTATCCATGAA---CGGTGACCTTTACAAATAGCATTATAC------------GTCTGA----ATGTC----CAT---ATTTAGCAT------GT--TTAAAACTG--A-C----T--ATCTACTAG-----GCACTA--TCTGAGTAA--CTGTCCCATTGATTCGT-TTACGTAA-A-----AA-CG-CCT----TTG--T-AATATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGATATC-----A-AGCAATTACGCGTTATTATAGA--TTTTGACTATTTGATTTCTT---TTT-GCTTCTACACAGCATGTTTAA---G--CAAATT-ATGTTTC-CTTTTCAAGCGTTTAATTCAA--TCTGTTGGTGATTCAGGTCAAACAAAAGT-AATATACTGATG-T-GACACCTA--------AT-TTCG-CAGTTT-T--TCT--TGTTTGTATTATAAAAAAGCTATTTGATTTCACTG-AGGTCAATGATAAAAAAAACAATTCTTCCTCGGGGATGTATTTTGACCCGAAAAACACAAA--AATTGAACAAGACAAATTC-TTA-TC--ATTCC-CTGGAATGATAGTTGTAACCTCTG--AC-------CTTACTGAAAGTAATTATTTGTATAT
gi|3 : ---CGGTTACAAATACAAATATCGTTCGAT------------GTCTGAGTGAATGTT----TAT---TTT-AGCATACAATTGTAGTTAGTATTGTTA------TT-ATTTGCTAT-----GCAGCA--TCTGAATCA--GTTTCCTATTGATTCGT-TTACGTAA-G-----AA---------------------ATAT-G----A-A--------T-TAACTGTTGTAT-------T------TT-----T------TTATTTGCGGGA---------A-AGCAATCAAATATTATAAGCAG--TTTTGGCTGTTTGATTCCTT---TTTCGATTTTACTCCGTACATTTTA---G--
gi|4 : tttttaataacttgtgagaaaatctgatatttgaatgaccatagttcagtagatgtattcattgaacttcaactgtagaaaagtaggaaaatacaagtaaagcaaaaacagtttgtacagacagaattcagtaaaatttacctcgaaggagtatatttccctacatatgagaagtaacaagtaattattaaaatagaaaattaatatatttataaggatgcatttgctttgtatttcattctttatagatcaaagaaaataatcaattgAAAGTTCTCCATGAA---CAGTCACCTGTGCAAAAAGCATTAGTT------------GTCTGG----ATGTC----CA----TTTTAACAT------GG--TTAAAAATG--A-C-----T-ATTTACTAAGGCT-GCACTA--TCTGAGCCG--GTGTCGTATCAATT-------CATAA-G-----AA-TGACCT----TTA--T---TAAAT-G----AAACT------TGTAAA---TGAACA------T------TTG---GTATTAGCT-------GGG----------G-AGCAAGCAAACGTTACTA-------TTTGA------GA--CCCT---TTT-GCATCTACACAGAACGTTTTAGGGG--TAA----ATAGCTC-TTTTTCAAGTCTATAGGTCAGAAT------GTACTTTGTGTAAAATGAAAAT-Ag
gi|5 : ttttaacgaatctgtgaaacaaatagactggatcagtccatgtacccatcgaacttttagaaaaatagatgtacagcaaaaaaagtgtgcattgacagaattcagtacaatcaatctgaaaggagtctactttcctacatttaagaagcaagtatgatacacatattatcttgttatttgctcactgatcgaccttatagatcataagTGAA---CAGTCACCTTCACAGATATCATTAAATCTAGATGAATTAGTCTGA----ATGTC----CACCAATTTGAACAT------GT--TTAGAACTG--A-TGACTTT-ATTTACTA--------------TCCGAGCTT--GTACCATACTCAT--GTATTACGTTA-A-----TA-GG-CCT----TTA--T-A--AT-T-G----ACAATT-----TATAAA---TGAACAGTTGGTT------TTG---GC------T-------GGGA---------A--GCAATCAGGCGTTACCATCAA--TTTTAACTATTTGAGCCCTT---TTT-GCTTCCACATTGTACGTTTGA---GA-TAAA-----AGTTCATTTTTCAAGTCTATAGTTCAG--T--ATTGATGGATTGC------CAAAAACGAATATACTGATG-TAAACAGCTGTTACAAGTATCTTCG-CAGATT-T--CTTG-TATACATATTTTAAAACAGTTATGTGTTTTCACTA-AGGTCAATAAT--T-AAAACTATTCTTCCTCCGGAAT
gi|6 : aaagcaagaatttcacaaatttaggatgcatttgtcttatttgcgcaattgtatacattataggtcagtagaaactAATTATACACAAA---TGTTCACCATAACAAACATAGATCGAT------------GCCTGA----ATGTT----CAA---TTTTAGCCT------GT--TTAGAATTT--A-TA---TTAATCTATCAG-----GCAATA--TCTAATTCA--CAATCCTATTGATTCTT-CCATGTAATA-----AA-TG-CCTGTA-TTA--T-A-CATGT-GTATAACT--------TATAAA---TGAAC-------TGTTTTATTG---GT------T--------GGA---------G-AGCAAGCATGTGTTATAATCGG--TTTT-AC------------T---TTT-GCT--AACAAAGTATGTTTGA---GGTTA-----ATAGTTC-CTTCTTAAGTCTATAGTTTGT--TCCGT--GTGTTTTATATCAAACAAAACC-GATACGATGATGTTAGACAAC
gi|7 : aactggaaggaatacatttccttactgttgggaagcaagtttacctcaaagtgaggatgcatttgccttgttgtttgcaatgttctgtacatagatcatcagacAAAGTTAGCTCTGAA---GGGTCACATTTACAAAAACCATTAGTT------------GTCTGA----ATGTC----GAT---TTTCAGCAT------GT--TTAGAATTG--A-T----T---TTTAATAG-----GCACAT--TCTGAGTC-------------GATTTGT-TCTGGGAATA-----AT-TG-CAT----TT---------TAT-T----ACATTTTTTTTTTTAAA---TGCAC----------------A---GT------T-------TTGA---------A-GGTAATCATGGGTTACTATCAA-------A-TATTTGGTTCCTTTTGTTT-GTTTCTACAAAGCAT---------G--TAAATT--TATTTA-TTTTT----TTTATAGTTCAG--TC--TTGATGCTTTacattttttcgtg
gi|8 : gaacttatagaaatatagataaatataagtacagcatccttgtgtgtgcattaccagaattcggcataatcaacaaagaagggatatatttctctacaattaggatgcatatgtcctgttatttgcaaaaattctgttcatttacatgatattatatgaatcataatAAAATTATC---GAATTACGGTCACGAATACAAATATCGTTCAAT------------ACCGGA----ATGTC----CAT---TTTTAGCAT------AT--TTGGTATTG--ACC----TT-ATTTACTAG-----TCAGTA--ACTGTGTCAACGCGTCCTATTGATTCGG-TAACATAAGA-----AA-TG-CCT----TTA--TCA-TA-ATCA----ATT--------TATAAA---TTAGC-------T------------GT------T-------CCGACCGACTTTGA-AGTAATTACGTGTTTTTATCAA--TTTTCACTATTTTATT-TTT---TTT-GCTCCTA
gi|9 : ctgcatttgagttagttagtatgcatttgccttgatttgaaaaattctggacattcatacgTTATCCATGAA---ACATTACCGTTGAAAATATAATTTGAC------------GCCTGA----ATATTGTAACATGA-TTATAAC---------T--TTAGAGCTG--A-C----TTTATTTACTAG-----TCACCA--TCTAATTCA--GTGTCGTAATGATTTGT-TTGCAAAATA-----GA-TG-TCT----TTA--T---TATAtct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATCAGTCTGTGTATCCATGGAACTTAGAAAAATAGATAAATAGAAGTACAGCATAAAGCGTGCATTGACAATATTCAGTATGTTTCAAGCTGGGATGCATGTCTTGTTATATGAAAAATTCT
Alignments
lowQualScore : 222222222222 111 111111 333333333333 222222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3333333333333333333 3333333333 33333 1 222222222222 1 1111 11 3333 11 11 1 2 1 1111 11 4444444
lowQualScore : 777 1 1 1 222222222222 8888 8888 222 4 111111 55 000000000000 111111 1 55 666 0 0 4 1 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 00 8888888 4 33 0 4 777 4 0 8888888888888888888 5 1 1 7777777777 00000 1 888 99 0 3 000000000000 6 3 4444 77 0 333 1 1 8 8 1 2222 1 1 11 1 6 11 22 6 0 0 0 0 2 7 0 5555 88 3333333 1
lowQualScore : ... . . . ............ .... .... ... . ...... .. ............ ...... . .. ... . . . . ..................................................................................................................... . .. ....... . .. . . ... . . ................... . . . .......... ..... . ... .. . . ............ . . .... .. . ... . . . . . .... . . .. . . .. .. . . . . . . . . .... .. ....... .
lowQualScore : 000 2 2 9 888888888888 5555 5555 555 7 555555 55 666666666666 000000 6 55 222 7 7 0 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 66 7777777 1 22 7 1 000 0 1 7777777777777777777 0 6 4 6666666666 22222 0 222 55 0 2 888888888888 5 3 8888 00 2 222 0 0 2 0 4 8888 4 4 22 0 5 88 55 5 0 8 0 0 5 0 2 3333 33 3333333 0
consensus : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GTGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G--TAAATC-ATAGTTC-CTTTTCAAGTCTATAGTTCAG--T--C-GTTGGTGCTTTACGT-A-AACAAAAAT-AATATACTGATG-TAGACANCTGTTACA--CATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTC-TTAGCCATTCC-CTNGAATGATAGTT-TAGCCTCTG--AC-------CTCANTGAAAGTAAATATGTGTTTAT
Reference ( family-4948 ) : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GTGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G--TAAATC-ATAGTTC-CTTTTCAAGTCTATAGTTCAG--T--C-GTTGGTGCTTTACGT-A-AACAAAAAT-AATATACTGATG-TAGACANCTGTTACA--CATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTC-TTA-TCATTCC-CTGGAATGATAGTT-TAGCCTCTG--AC-------CTCANTGAAAGTAAATATGTGTTTAT
gi|1 : AAAGTTATCCATGAA---CGTTCATCTTTATACATGTCATTAGAT------------ACCTTA----ATGCC----TAT---TTT-AAAAT------GT--TTAGAACTGT-A-A----AT-ATTCAATAG-------ATTAATTACGAAAGA--ACTTCCT-TT-ATTC---TTAAATAA-ACAATAAACTG-TTTGATATTAAAT-A-TATAT-G----ACA--------TAAAAA---TGAACAATAA--TGA----TTG---GT------T-------TGGA---------A-A-CAATCGCGC---------------------------TTCCAT---TTT-GCTTATACACA-----------------AAACA-AT----------TCAAGTCTA-------G-------GTTAGTGCTTTAC-T-A-AA----------TGT--------TAAGCATCTGTTACA--CGCCGTAGATAATTTGTAATCTA-TGTAATTATAAAAAAAAAGCTATTTGATTTTACTG-AAGTCATTGAT--T-CAAACAATTCTTCGACGGGAACGACTTTTGACAAGAAAAATAC-AA-CAGCTGATCGACATGAGTTC-TTAGTCTTTCC-CTTG---GATAGTT-T---CTTAA--AC-------TTCATTGAGAGTAAATATGTGTTTAT
gi|10 : ggaatcaactttaaaagttacgtcaacggtgcatacgtcttgttatttgcaaaattatatacatttattcataagaatcatattaaagCTGA----ATGTC----TAT---TGTTAGCAT------GT--TTAGAACTG--A-CG---TT-ATTAACTAGACACGGCACTA--TCTGAGGCA--ATGTCCTATTGATTCGT-TTAC----------------------------------ATAT-----------------TATAAA---TGA----------------TCA---GT------T-------GATA---------ATGGCTATAACGCGTTACTGTCAA--TTTTGACTATTTGATT-CTG---TTT-ACTTCTGTACCGTACGTATAG---G--TGAA-C-A---TTC-CTTTACAAGTATGTAGATCAA--C--T-G-TGGTGCTTTACTT-ACAGCATAAAT-AATAgtataatcacaattcatctgccatacaaaaattaagact
gi|11 : AAATTGTCCATGAA---CGGCAACCTTTACAAATAACATT
gi|12 : tagataaatagaagtacagaaataaaatgtaatttgattaagtataatcaatctaaaagaagtctagtttcatacatttaagaagcaagacatttcaaattcaggatgcttttttttgtatttgcgatattttgtacattagagatcatgagtACAAAAAACA---A-CAGTTGATCGCGATGAATTC-ACAGCCAATCT-CTTGGATTTTGTTT-TAGCTGCTGTTACTATTGGTCTCAATGAAAAAAAACATGTGTTCAT
gi|13 : acaTT-T--TCTAATTTTTTTTTTATTAACCAGCTATTTGCTTT-ACTGGAATTCAATGAT--T-AAAACAATTCTTTCACGGGGATGGCTACTAACAC-----ACACAAACCGGTTGATCGAGAC-CATTCATGA-CCATGCCGCTGGAATAATAGTtgcatacacaaatttcacttttcatacaaaagcaagac
gi|15 : ATAAA---TCAAC-------TGTT---TTGTAGGT------T-------GGGA---------A--GTAATCACGGGTTATTGTAGAGATTTTGGCTATTTGATTCCCA---TTT-GGTTCTATATAGTACGTTTCA---G-----ATCAATAGTTC-CTTTTC
gi|16 : actaTTTGCTTTAACTG-AAGTCATTAAT--AAAAAACAACTCTTCCTCGCGCATGTTTATTGAC
gi|2 : AAAGGTATCCATGAA---CGGTGACCTTTACAAATAGCATTATAC------------GTCTGA----ATGTC----CAT---ATTTAGCAT------GT--TTAAAACTG--A-C----T--ATCTACTAG-----GCACTA--TCTGAGTAA--CTGTCCCATTGATTCGT-TTACGTAA-A-----AA-CG-CCT----TTG--T-AATATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGATATC-----A-AGCAATTACGCGTTATTATAGA--TTTTGACTATTTGATTTCTT---TTT-GCTTCTACACAGCATGTTTAA---G--CAAATT-ATGTTTC-CTTTTCAAGCGTTTAATTCAA--T--CTGTTGGTGATTCAGGTCA-AACAAAAGT-AATATACTGATG-T-GACACCTA--------AT-TTCG-CAGTTT-T--TCT--TGTTTGTATTATAAAAAAGCTATTTGATTTCACTG-AGGTCAATGATAAAAAAAACAATTCTTCCTCGGGGATGTATTTTGACCCGAAAAACACAAA--AATTGAACAAGACAAATTC-TTA-TCATTCC-CTGGAATGATAGTTGTAACCTCTG--AC-------CTTACTGAAAGTAATTATTTGTATAT
gi|3 : ---CGGTTACAAATACAAATATCGTTCGAT------------GTCTGAGTGAATGTT----TAT---TTT-AGCATACAATTGTAGTTAGTATTGTTA------TT-ATTTGCTAT-----GCAGCA--TCTGAATCA--GTTTCCTATTGATTCGT-TTACGTAA-G-----AA---------------------ATAT-G----A-A--------T-TAACTGTTGTAT-------T------TT-----T------TTATTTGCGGGA---------A-AGCAATCAAATATTATAAGCAG--TTTTGGCTGTTTGATTCCTT---TTTCGATTTTACTCCGTACATTTTA---G--
gi|4 : tttttaataacttgtgagaaaatctgatatttgaatgaccatagttcagtagatgtattcattgaacttcaactgtagaaaagtaggaaaatacaagtaaagcaaaaacagtttgtacagacagaattcagtaaaatttacctcgaaggagtatatttccctacatatgagaagtaacaagtaattattaaaatagaaaattaatatatttataaggatgcatttgctttgtatttcattctttatagatcaaagaaaataatcaattgAAAGTTCTCCATGAA---CAGTCACCTGTGCAAAAAGCATTAGTT------------GTCTGG----ATGTC----CA----TTTTAACAT------GG--TTAAAAATG--A-C-----T-ATTTACTAAGGCT-GCACTA--TCTGAGCCG--GTGTCGTATCAATT-------CATAA-G-----AA-TGACCT----TTA--T---TAAAT-G----AAACT------TGTAAA---TGAACA------T------TTG---GTATTAGCT-------GGG----------G-AGCAAGCAAACGTTACTA-------TTTGA------GA--CCCT---TTT-GCATCTACACAGAACGTTTTAGGGG--TAA----ATAGCTC-TTTTTCAAGTCTATAGGTCAGAAT--------GTACTTTGTGTAA-AATGAAAAT-Ag
gi|5 : ttttaacgaatctgtgaaacaaatagactggatcagtccatgtacccatcgaacttttagaaaaatagatgtacagcaaaaaaagtgtgcattgacagaattcagtacaatcaatctgaaaggagtctactttcctacatttaagaagcaagtatgatacacatattatcttgttatttgctcactgatcgaccttatagatcataagTGAA---CAGTCACCTTCACAGATATCATTAAATCTAGATGAATTAGTCTGA----ATGTC----CACCAATTTGAACAT------GT--TTAGAACTG--A-TGACTTT-ATTTACTA--------------TCCGAGCTT--GTACCATACTCAT--GTATTACGTTA-A-----TA-GG-CCT----TTA--T-A--AT-T-G----ACAATT-----TATAAA---TGAACAGTTGGTT------TTG---GC------T-------GGGA---------A--GCAATCAGGCGTTACCATCAA--TTTTAACTATTTGAGCCCTT---TTT-GCTTCCACATTGTACGTTTGA---GA-TAAA-----AGTTCATTTTTCAAGTCTATAGTTCAG--T----ATTGATGGATTGC-------CAAAAACGAATATACTGATG-TAAACAGCTGTTACAAGTATCTTCG-CAGATT-T--CTTG-TATACATATTTTAAAACAGTTATGTGTTTTCACTA-AGGTCAATAAT--T-AAAACTATTCTTCCTCCGGAAT
gi|6 : aaagcaagaatttcacaaatttaggatgcatttgtcttatttgcgcaattgtatacattataggtcagtagaaactAATTATACACAAA---TGTTCACCATAACAAACATAGATCGAT------------GCCTGA----ATGTT----CAA---TTTTAGCCT------GT--TTAGAATTT--A-TA---TTAATCTATCAG-----GCAATA--TCTAATTCA--CAATCCTATTGATTCTT-CCATGTAATA-----AA-TG-CCTGTA-TTA--T-A-CATGT-GTATAACT--------TATAAA---TGAAC-------TGTTTTATTG---GT------T--------GGA---------G-AGCAAGCATGTGTTATAATCGG--TTTT-AC------------T---TTT-GCT--AACAAAGTATGTTTGA---GGTTA-----ATAGTTC-CTTCTTAAGTCTATAGTTT-G--TTCC-GT--GTGTTTTATATCA-AACAAAACC-GATACGATGATGTTAGACA------ACA--CATTTT
gi|7 : aactggaaggaatacatttccttactgttgggaagcaagtttacctcaaagtgaggatgcatttgccttgttgtttgcaatgttctgtacatagatcatcagacAAAGTTAGCTCTGAA---GGGTCACATTTACAAAAACCATTAGTT------------GTCTGA----ATGTC----GAT---TTTCAGCAT------GT--TTAGAATTG--A-T----T---TTTAATAG-----GCACAT--TCTGAGTC-------------GATTTGT-TCTGGGAATA-----AT-TG-CAT----TT---------TAT-T----ACATTTTTTTTTTTAAA---TGCAC----------------A---GT------T-------TTGA---------A-GGTAATCATGGGTTACTATCAA-------A-TATTTGGTTCCTTTTGTTT-GTTTCTACAAAGCAT---------G--TAAATT--TATTTA-TTTTT----TTTATAGTTCAG--T--C--TTGATGCTTTttcgtg
gi|8 : gaacttatagaaatatagataaatataagtacagcatccttgtgtgtgcattaccagaattcggcataatcaacaaagaagggatatatttctctacaattaggatgcatatgtcctgttatttgcaaaaattctgttcatttacatgatattatatgaatcataatAAAATTATC---GAATTACGGTCACGAATACAAATATCGTTCAAT------------ACCGGA----ATGTC----CAT---TTTTAGCAT------AT--TTGGTATTG--ACC----TT-ATTTACTAG-----TCAGTA--ACTGTGTCAACGCGTCCTATTGATTCGG-TAACATAAGA-----AA-TG-CCT----TTA--TCA-TA-ATCA----ATT--------TATAAA---TTAGC-------T------------GT------T-------CCGACCGACTTTGA-AGTAATTACGTGTTTTTATCAA--TTTTCACTATTTTATT-TTT---TTT-GCTCCTA
gi|9 : ctgcatttgagttagttagtatgcatttgccttgatttgaaaaattctggacattcatacgTTATCCATGAA---ACATTACCGTTGAAAATATAATTTGAC------------GCCTGA----ATATTGTAACATGA-TTATAAC---------T--TTAGAGCTG--A-C----TTTATTTACTAG-----TCACCA--TCTAATTCA--GTGTCGTAATGATTTGT-TTGCAAAATA-----GA-TG-TCT----TTA--T---TATAtct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATCAGTCTGTGTATCCATGGAACTTAGAAAAATAGATAAATAGAAGTACAGCATAAAGCGTGCATTGACAATATTCAGTATGTTTCAAGCTGGGATGCATGTCTTGTTATATGAAAAATTCT
Alignments
lowQualScore : 222222222222 111 111111 333333333333 222222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3333333333333333333 3333333333 33333 1 222222222222 1 1111 11 3333 11 11 1 1111 11 4444444
lowQualScore : 777 1 1 1 222222222222 8888 8888 222 4 111111 55 000000000000 111111 1 55 666 0 0 4 1 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 00 8888888 4 33 0 4 777 4 0 8888888888888888888 5 1 1 7777777777 00000 1 888 99 0 3 000000000000 6 3 4444 77 0 333 1 1 8 8 1 2222 1 1 11 1 6 11 22 6 4 6 0 1 7 0 5555 88 3333333 1
lowQualScore : ... . . . ............ .... .... ... . ...... .. ............ ...... . .. ... . . . . ..................................................................................................................... . .. ....... . .. . . ... . . ................... . . . .......... ..... . ... .. . . ............ . . .... .. . ... . . . . . .... . . .. . . .. .. . . . . . . . .... .. ....... .
lowQualScore : 000 2 2 9 888888888888 5555 5555 555 7 555555 55 666666666666 000000 6 55 222 7 7 0 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 66 7777777 1 22 7 1 000 0 1 7777777777777777777 0 6 4 6666666666 22222 0 222 55 0 2 888888888888 5 3 8888 00 2 222 0 0 2 0 4 8888 4 4 22 0 5 88 55 5 0 5 0 0 0 2 3333 33 3333333 0
consensus : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GTGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G--TAAATC-ATAGTTC-CTTTTCAAGTCTATAGTTCAG--T--C-GTTGGTGCTTTACGT-A-AACAAAAAT-AATATACTGATG-TAGACANCTGTTACA--CATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTCNTAGCCATTCC-CTNGAATGATAGTT-TAGCCTCTG--AC-------CTCANTGAAAGTAAATATGTGTTTAT
Reference ( family-4948 ) : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GTGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G--TAAATC-ATAGTTC-CTTTTCAAGTCTATAGTTCAG--T--C-GTTGGTGCTTTACGT-A-AACAAAAAT-AATATACTGATG-TAGACANCTGTTACA--CATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTCTTAGCCATTCC-CTNGAATGATAGTT-TAGCCTCTG--AC-------CTCANTGAAAGTAAATATGTGTTTAT
gi|1 : AAAGTTATCCATGAA---CGTTCATCTTTATACATGTCATTAGAT------------ACCTTA----ATGCC----TAT---TTT-AAAAT------GT--TTAGAACTGT-A-A----AT-ATTCAATAG-------ATTAATTACGAAAGA--ACTTCCT-TT-ATTC---TTAAATAA-ACAATAAACTG-TTTGATATTAAAT-A-TATAT-G----ACA--------TAAAAA---TGAACAATAA--TGA----TTG---GT------T-------TGGA---------A-A-CAATCGCGC---------------------------TTCCAT---TTT-GCTTATACACA-----------------AAACA-AT----------TCAAGTCTA-------G-------GTTAGTGCTTTAC-T-A-AA----------TGT--------TAAGCATCTGTTACA--CGCCGTAGATAATTTGTAATCTA-TGTAATTATAAAAAAAAAGCTATTTGATTTTACTG-AAGTCATTGAT--T-CAAACAATTCTTCGACGGGAACGACTTTTGACAAGAAAAATAC-AA-CAGCTGATCGACATGAGTTCTTAGTCTTTCC-CTTG---GATAGTT-T---CTTAA--AC-------TTCATTGAGAGTAAATATGTGTTTAT
gi|10 : ggaatcaactttaaaagttacgtcaacggtgcatacgtcttgttatttgcaaaattatatacatttattcataagaatcatattaaagCTGA----ATGTC----TAT---TGTTAGCAT------GT--TTAGAACTG--A-CG---TT-ATTAACTAGACACGGCACTA--TCTGAGGCA--ATGTCCTATTGATTCGT-TTAC----------------------------------ATAT-----------------TATAAA---TGA----------------TCA---GT------T-------GATA---------ATGGCTATAACGCGTTACTGTCAA--TTTTGACTATTTGATT-CTG---TTT-ACTTCTGTACCGTACGTATAG---G--TGAA-C-A---TTC-CTTTACAAGTATGTAGATCAA--C--T-G-TGGTGCTTTACTT-ACAGCATAAAT-AATAgtataatcacaattcatctgccatacaaaaattaagact
gi|11 : AAATTGTCCATGAA---CGGCAACCTTTACAAATAACATT
gi|12 : tagataaatagaagtacagaaataaaatgtaatttgattaagtataatcaatctaaaagaagtctagtttcatacatttaagaagcaagacatttcaaattcaggatgcttttttttgtatttgcgatattttgtacattagagatcatgagtACAAAAAACA---A-CAGTTGATCGCGATGAATTCACAGCCAATCT-CTTGGATTTTGTTT-TAGCTGCTGTTACTATTGGTCTCAATGAAAAAAAACATGTGTTCAT
gi|13 : acaTT-T--TCTAATTTTTTTTTTATTAACCAGCTATTTGCTTT-ACTGGAATTCAATGAT--T-AAAACAATTCTTTCACGGGGATGGCTACTAACAC-----ACACAAACCGGTTGATCGAGAC-CATTCATGACCATGCCGCTGGAATAATAGTtgcatacacaaatttcacttttcatacaaaagcaagac
gi|15 : ATAAA---TCAAC-------TGTT---TTGTAGGT------T-------GGGA---------A--GTAATCACGGGTTATTGTAGAGATTTTGGCTATTTGATTCCCA---TTT-GGTTCTATATAGTACGTTTCA---G-----ATCAATAGTTC-CTTTTC
gi|16 : actaTTTGCTTTAACTG-AAGTCATTAAT--AAAAAACAACTCTTCCTCGCGCATGTTTATTGAC
gi|2 : AAAGGTATCCATGAA---CGGTGACCTTTACAAATAGCATTATAC------------GTCTGA----ATGTC----CAT---ATTTAGCAT------GT--TTAAAACTG--A-C----T--ATCTACTAG-----GCACTA--TCTGAGTAA--CTGTCCCATTGATTCGT-TTACGTAA-A-----AA-CG-CCT----TTG--T-AATATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGATATC-----A-AGCAATTACGCGTTATTATAGA--TTTTGACTATTTGATTTCTT---TTT-GCTTCTACACAGCATGTTTAA---G--CAAATT-ATGTTTC-CTTTTCAAGCGTTTAATTCAA--T--CTGTTGGTGATTCAGGTCA-AACAAAAGT-AATATACTGATG-T-GACACCTA--------AT-TTCG-CAGTTT-T--TCT--TGTTTGTATTATAAAAAAGCTATTTGATTTCACTG-AGGTCAATGATAAAAAAAACAATTCTTCCTCGGGGATGTATTTTGACCCGAAAAACACAAA--AATTGAACAAGACAAATTCTTA-TCATTCC-CTGGAATGATAGTTGTAACCTCTG--AC-------CTTACTGAAAGTAATTATTTGTATAT
gi|3 : ---CGGTTACAAATACAAATATCGTTCGAT------------GTCTGAGTGAATGTT----TAT---TTT-AGCATACAATTGTAGTTAGTATTGTTA------TT-ATTTGCTAT-----GCAGCA--TCTGAATCA--GTTTCCTATTGATTCGT-TTACGTAA-G-----AA---------------------ATAT-G----A-A--------T-TAACTGTTGTAT-------T------TT-----T------TTATTTGCGGGA---------A-AGCAATCAAATATTATAAGCAG--TTTTGGCTGTTTGATTCCTT---TTTCGATTTTACTCCGTACATTTTA---G--
gi|4 : tttttaataacttgtgagaaaatctgatatttgaatgaccatagttcagtagatgtattcattgaacttcaactgtagaaaagtaggaaaatacaagtaaagcaaaaacagtttgtacagacagaattcagtaaaatttacctcgaaggagtatatttccctacatatgagaagtaacaagtaattattaaaatagaaaattaatatatttataaggatgcatttgctttgtatttcattctttatagatcaaagaaaataatcaattgAAAGTTCTCCATGAA---CAGTCACCTGTGCAAAAAGCATTAGTT------------GTCTGG----ATGTC----CA----TTTTAACAT------GG--TTAAAAATG--A-C-----T-ATTTACTAAGGCT-GCACTA--TCTGAGCCG--GTGTCGTATCAATT-------CATAA-G-----AA-TGACCT----TTA--T---TAAAT-G----AAACT------TGTAAA---TGAACA------T------TTG---GTATTAGCT-------GGG----------G-AGCAAGCAAACGTTACTA-------TTTGA------GA--CCCT---TTT-GCATCTACACAGAACGTTTTAGGGG--TAA----ATAGCTC-TTTTTCAAGTCTATAGGTCAGAAT--------GTACTTTGTGTAA-AATGAAAAT-Ag
gi|5 : ttttaacgaatctgtgaaacaaatagactggatcagtccatgtacccatcgaacttttagaaaaatagatgtacagcaaaaaaagtgtgcattgacagaattcagtacaatcaatctgaaaggagtctactttcctacatttaagaagcaagtatgatacacatattatcttgttatttgctcactgatcgaccttatagatcataagTGAA---CAGTCACCTTCACAGATATCATTAAATCTAGATGAATTAGTCTGA----ATGTC----CACCAATTTGAACAT------GT--TTAGAACTG--A-TGACTTT-ATTTACTA--------------TCCGAGCTT--GTACCATACTCAT--GTATTACGTTA-A-----TA-GG-CCT----TTA--T-A--AT-T-G----ACAATT-----TATAAA---TGAACAGTTGGTT------TTG---GC------T-------GGGA---------A--GCAATCAGGCGTTACCATCAA--TTTTAACTATTTGAGCCCTT---TTT-GCTTCCACATTGTACGTTTGA---GA-TAAA-----AGTTCATTTTTCAAGTCTATAGTTCAG--T----ATTGATGGATTGC-------CAAAAACGAATATACTGATG-TAAACAGCTGTTACAAGTATCTTCG-CAGATT-T--CTTG-TATACATATTTTAAAACAGTTATGTGTTTTCACTA-AGGTCAATAAT--T-AAAACTATTCTTCCTCCGGAAT
gi|6 : aaagcaagaatttcacaaatttaggatgcatttgtcttatttgcgcaattgtatacattataggtcagtagaaactAATTATACACAAA---TGTTCACCATAACAAACATAGATCGAT------------GCCTGA----ATGTT----CAA---TTTTAGCCT------GT--TTAGAATTT--A-TA---TTAATCTATCAG-----GCAATA--TCTAATTCA--CAATCCTATTGATTCTT-CCATGTAATA-----AA-TG-CCTGTA-TTA--T-A-CATGT-GTATAACT--------TATAAA---TGAAC-------TGTTTTATTG---GT------T--------GGA---------G-AGCAAGCATGTGTTATAATCGG--TTTT-AC------------T---TTT-GCT--AACAAAGTATGTTTGA---GGTTA-----ATAGTTC-CTTCTTAAGTCTATAGTTT-G--TTCC-GT--GTGTTTTATATCA-AACAAAACC-GATACGATGATGTTAGACA------ACA--CATTTT
gi|7 : aactggaaggaatacatttccttactgttgggaagcaagtttacctcaaagtgaggatgcatttgccttgttgtttgcaatgttctgtacatagatcatcagacAAAGTTAGCTCTGAA---GGGTCACATTTACAAAAACCATTAGTT------------GTCTGA----ATGTC----GAT---TTTCAGCAT------GT--TTAGAATTG--A-T----T---TTTAATAG-----GCACAT--TCTGAGTC-------------GATTTGT-TCTGGGAATA-----AT-TG-CAT----TT---------TAT-T----ACATTTTTTTTTTTAAA---TGCAC----------------A---GT------T-------TTGA---------A-GGTAATCATGGGTTACTATCAA-------A-TATTTGGTTCCTTTTGTTT-GTTTCTACAAAGCAT---------G--TAAATT--TATTTA-TTTTT----TTTATAGTTCAG--T--C--TTGATGCTTTttcgtg
gi|8 : gaacttatagaaatatagataaatataagtacagcatccttgtgtgtgcattaccagaattcggcataatcaacaaagaagggatatatttctctacaattaggatgcatatgtcctgttatttgcaaaaattctgttcatttacatgatattatatgaatcataatAAAATTATC---GAATTACGGTCACGAATACAAATATCGTTCAAT------------ACCGGA----ATGTC----CAT---TTTTAGCAT------AT--TTGGTATTG--ACC----TT-ATTTACTAG-----TCAGTA--ACTGTGTCAACGCGTCCTATTGATTCGG-TAACATAAGA-----AA-TG-CCT----TTA--TCA-TA-ATCA----ATT--------TATAAA---TTAGC-------T------------GT------T-------CCGACCGACTTTGA-AGTAATTACGTGTTTTTATCAA--TTTTCACTATTTTATT-TTT---TTT-GCTCCTA
gi|9 : ctgcatttgagttagttagtatgcatttgccttgatttgaaaaattctggacattcatacgTTATCCATGAA---ACATTACCGTTGAAAATATAATTTGAC------------GCCTGA----ATATTGTAACATGA-TTATAAC---------T--TTAGAGCTG--A-C----TTTATTTACTAG-----TCACCA--TCTAATTCA--GTGTCGTAATGATTTGT-TTGCAAAATA-----GA-TG-TCT----TTA--T---TATAtct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATCAGTCTGTGTATCCATGGAACTTAGAAAAATAGATAAATAGAAGTACAGCATAAAGCGTGCATTGACAATATTCAGTATGTTTCAAGCTGGGATGCATGTCTTGTTATATGAAAAATTCT
Alignments
lowQualScore : 222222222222 111 111111 333333333333 222222 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3333333333333333333 3333333333 33333 1 222222222222 1 1111 11 3333 11 11 1 1111 11 4444444
lowQualScore : 777 1 1 1 222222222222 8888 8888 222 4 111111 55 000000000000 111111 1 55 666 0 0 4 1 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 00 8888888 4 33 0 4 777 4 0 8888888888888888888 5 1 1 7777777777 00000 1 888 99 0 3 000000000000 6 3 4444 77 0 333 1 1 8 8 1 2222 1 1 11 1 6 11 22 6 1 6 0 1 7 0 5555 88 3333333 1
lowQualScore : ... . . . ............ .... .... ... . ...... .. ............ ...... . .. ... . . . . ..................................................................................................................... . .. ....... . .. . . ... . . ................... . . . .......... ..... . ... .. . . ............ . . .... .. . ... . . . . . .... . . .. . . .. .. . . . . . . . .... .. ....... .
lowQualScore : 000 2 2 9 888888888888 5555 5555 555 7 555555 55 666666666666 000000 6 55 222 7 7 0 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 66 7777777 1 22 7 1 000 0 1 7777777777777777777 0 6 4 6666666666 22222 0 222 55 0 2 888888888888 5 3 8888 00 2 222 0 0 2 0 4 8888 4 4 22 0 5 88 55 5 0 5 0 0 0 2 3333 33 3333333 0
consensus : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GTGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G--TAAATC-ATAGTTC-CTTTTCAAGTCTATAGTTCAG--T--C-GTTGGTGCTTTACGT-A-AACAAAAAT-AATATACTGATG-TAGACANCTGTTACA--CATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTCNTAGCCATTCC-CTNGAATGATAGTT-TAGCCTCTG--AC-------CTCANTGAAAGTAAATATGTGTTTAT
Reference ( family-4948 ) : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GTGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G--TAAATC-ATAGTTC-CTTTTCAAGTCTATAGTTCAG--T--C-GTTGGTGCTTTACGT-A-AACAAAAAT-AATATACTGATG-TAGACANCTGTTACA--CATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTCNTAGCCATTCC-CTNGAATGATAGTT-TAGCCTCTG--AC-------CTCANTGAAAGTAAATATGTGTTTAT
gi|1 : AAAGTTATCCATGAA---CGTTCATCTTTATACATGTCATTAGAT------------ACCTTA----ATGCC----TAT---TTT-AAAAT------GT--TTAGAACTGT-A-A----AT-ATTCAATAG-------ATTAATTACGAAAGA--ACTTCCT-TT-ATTC---TTAAATAA-ACAATAAACTG-TTTGATATTAAAT-A-TATAT-G----ACA--------TAAAAA---TGAACAATAA--TGA----TTG---GT------T-------TGGA---------A-A-CAATCGCGC---------------------------TTCCAT---TTT-GCTTATACACA-----------------AAACA-AT----------TCAAGTCTA-------G-------GTTAGTGCTTTAC-T-A-AA----------TGT--------TAAGCATCTGTTACA--CGCCGTAGATAATTTGTAATCTA-TGTAATTATAAAAAAAAAGCTATTTGATTTTACTG-AAGTCATTGAT--T-CAAACAATTCTTCGACGGGAACGACTTTTGACAAGAAAAATAC-AA-CAGCTGATCGACATGAGTTCTTAGTCTTTCC-CTTG---GATAGTT-T---CTTAA--AC-------TTCATTGAGAGTAAATATGTGTTTAT
gi|10 : ggaatcaactttaaaagttacgtcaacggtgcatacgtcttgttatttgcaaaattatatacatttattcataagaatcatattaaagCTGA----ATGTC----TAT---TGTTAGCAT------GT--TTAGAACTG--A-CG---TT-ATTAACTAGACACGGCACTA--TCTGAGGCA--ATGTCCTATTGATTCGT-TTAC----------------------------------ATAT-----------------TATAAA---TGA----------------TCA---GT------T-------GATA---------ATGGCTATAACGCGTTACTGTCAA--TTTTGACTATTTGATT-CTG---TTT-ACTTCTGTACCGTACGTATAG---G--TGAA-C-A---TTC-CTTTACAAGTATGTAGATCAA--C--T-G-TGGTGCTTTACTT-ACAGCATAAAT-AATAgtataatcacaattcatctgccatacaaaaattaagact
gi|11 : AAATTGTCCATGAA---CGGCAACCTTTACAAATAACATT
gi|12 : tagataaatagaagtacagaaataaaatgtaatttgattaagtataatcaatctaaaagaagtctagtttcatacatttaagaagcaagacatttcaaattcaggatgcttttttttgtatttgcgatattttgtacattagagatcatgagtACAAAAAACA---A-CAGTTGATCGCGATGAATTCACAGCCAATCT-CTTGGATTTTGTTT-TAGCTGCTGTTACTATTGGTCTCAATGAAAAAAAACATGTGTTCAT
gi|13 : acaTT-T--TCTAATTTTTTTTTTATTAACCAGCTATTTGCTTT-ACTGGAATTCAATGAT--T-AAAACAATTCTTTCACGGGGATGGCTACTAACAC-----ACACAAACCGGTTGATCGAGAC-CATTCATGACCATGCCGCTGGAATAATAGTtgcatacacaaatttcacttttcatacaaaagcaagac
gi|15 : ATAAA---TCAAC-------TGTT---TTGTAGGT------T-------GGGA---------A--GTAATCACGGGTTATTGTAGAGATTTTGGCTATTTGATTCCCA---TTT-GGTTCTATATAGTACGTTTCA---G-----ATCAATAGTTC-CTTTTC
gi|16 : actaTTTGCTTTAACTG-AAGTCATTAAT--AAAAAACAACTCTTCCTCGCGCATGTTTATTGAC
gi|2 : AAAGGTATCCATGAA---CGGTGACCTTTACAAATAGCATTATAC------------GTCTGA----ATGTC----CAT---ATTTAGCAT------GT--TTAAAACTG--A-C----T--ATCTACTAG-----GCACTA--TCTGAGTAA--CTGTCCCATTGATTCGT-TTACGTAA-A-----AA-CG-CCT----TTG--T-AATATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGATATC-----A-AGCAATTACGCGTTATTATAGA--TTTTGACTATTTGATTTCTT---TTT-GCTTCTACACAGCATGTTTAA---G--CAAATT-ATGTTTC-CTTTTCAAGCGTTTAATTCAA--T--CTGTTGGTGATTCAGGTCA-AACAAAAGT-AATATACTGATG-T-GACACCTA--------AT-TTCG-CAGTTT-T--TCT--TGTTTGTATTATAAAAAAGCTATTTGATTTCACTG-AGGTCAATGATAAAAAAAACAATTCTTCCTCGGGGATGTATTTTGACCCGAAAAACACAAA--AATTGAACAAGACAAATTCTTA-TCATTCC-CTGGAATGATAGTTGTAACCTCTG--AC-------CTTACTGAAAGTAATTATTTGTATAT
gi|3 : ---CGGTTACAAATACAAATATCGTTCGAT------------GTCTGAGTGAATGTT----TAT---TTT-AGCATACAATTGTAGTTAGTATTGTTA------TT-ATTTGCTAT-----GCAGCA--TCTGAATCA--GTTTCCTATTGATTCGT-TTACGTAA-G-----AA---------------------ATAT-G----A-A--------T-TAACTGTTGTAT-------T------TT-----T------TTATTTGCGGGA---------A-AGCAATCAAATATTATAAGCAG--TTTTGGCTGTTTGATTCCTT---TTTCGATTTTACTCCGTACATTTTA---G--
gi|4 : tttttaataacttgtgagaaaatctgatatttgaatgaccatagttcagtagatgtattcattgaacttcaactgtagaaaagtaggaaaatacaagtaaagcaaaaacagtttgtacagacagaattcagtaaaatttacctcgaaggagtatatttccctacatatgagaagtaacaagtaattattaaaatagaaaattaatatatttataaggatgcatttgctttgtatttcattctttatagatcaaagaaaataatcaattgAAAGTTCTCCATGAA---CAGTCACCTGTGCAAAAAGCATTAGTT------------GTCTGG----ATGTC----CA----TTTTAACAT------GG--TTAAAAATG--A-C-----T-ATTTACTAAGGCT-GCACTA--TCTGAGCCG--GTGTCGTATCAATT-------CATAA-G-----AA-TGACCT----TTA--T---TAAAT-G----AAACT------TGTAAA---TGAACA------T------TTG---GTATTAGCT-------GGG----------G-AGCAAGCAAACGTTACTA-------TTTGA------GA--CCCT---TTT-GCATCTACACAGAACGTTTTAGGGG--TAA----ATAGCTC-TTTTTCAAGTCTATAGGTCAGAAT--------GTACTTTGTGTAA-AATGAAAAT-Ag
gi|5 : ttttaacgaatctgtgaaacaaatagactggatcagtccatgtacccatcgaacttttagaaaaatagatgtacagcaaaaaaagtgtgcattgacagaattcagtacaatcaatctgaaaggagtctactttcctacatttaagaagcaagtatgatacacatattatcttgttatttgctcactgatcgaccttatagatcataagTGAA---CAGTCACCTTCACAGATATCATTAAATCTAGATGAATTAGTCTGA----ATGTC----CACCAATTTGAACAT------GT--TTAGAACTG--A-TGACTTT-ATTTACTA--------------TCCGAGCTT--GTACCATACTCAT--GTATTACGTTA-A-----TA-GG-CCT----TTA--T-A--AT-T-G----ACAATT-----TATAAA---TGAACAGTTGGTT------TTG---GC------T-------GGGA---------A--GCAATCAGGCGTTACCATCAA--TTTTAACTATTTGAGCCCTT---TTT-GCTTCCACATTGTACGTTTGA---GA-TAAA-----AGTTCATTTTTCAAGTCTATAGTTCAG--T----ATTGATGGATTGC-------CAAAAACGAATATACTGATG-TAAACAGCTGTTACAAGTATCTTCG-CAGATT-T--CTTG-TATACATATTTTAAAACAGTTATGTGTTTTCACTA-AGGTCAATAAT--T-AAAACTATTCTTCCTCCGGAAT
gi|6 : aaagcaagaatttcacaaatttaggatgcatttgtcttatttgcgcaattgtatacattataggtcagtagaaactAATTATACACAAA---TGTTCACCATAACAAACATAGATCGAT------------GCCTGA----ATGTT----CAA---TTTTAGCCT------GT--TTAGAATTT--A-TA---TTAATCTATCAG-----GCAATA--TCTAATTCA--CAATCCTATTGATTCTT-CCATGTAATA-----AA-TG-CCTGTA-TTA--T-A-CATGT-GTATAACT--------TATAAA---TGAAC-------TGTTTTATTG---GT------T--------GGA---------G-AGCAAGCATGTGTTATAATCGG--TTTT-AC------------T---TTT-GCT--AACAAAGTATGTTTGA---GGTTA-----ATAGTTC-CTTCTTAAGTCTATAGTTT-G--TTCC-GT--GTGTTTTATATCA-AACAAAACC-GATACGATGATGTTAGACA------ACA--CATTTT
gi|7 : aactggaaggaatacatttccttactgttgggaagcaagtttacctcaaagtgaggatgcatttgccttgttgtttgcaatgttctgtacatagatcatcagacAAAGTTAGCTCTGAA---GGGTCACATTTACAAAAACCATTAGTT------------GTCTGA----ATGTC----GAT---TTTCAGCAT------GT--TTAGAATTG--A-T----T---TTTAATAG-----GCACAT--TCTGAGTC-------------GATTTGT-TCTGGGAATA-----AT-TG-CAT----TT---------TAT-T----ACATTTTTTTTTTTAAA---TGCAC----------------A---GT------T-------TTGA---------A-GGTAATCATGGGTTACTATCAA-------A-TATTTGGTTCCTTTTGTTT-GTTTCTACAAAGCAT---------G--TAAATT--TATTTA-TTTTT----TTTATAGTTCAG--T--C--TTGATGCTTTttcgtg
gi|8 : gaacttatagaaatatagataaatataagtacagcatccttgtgtgtgcattaccagaattcggcataatcaacaaagaagggatatatttctctacaattaggatgcatatgtcctgttatttgcaaaaattctgttcatttacatgatattatatgaatcataatAAAATTATC---GAATTACGGTCACGAATACAAATATCGTTCAAT------------ACCGGA----ATGTC----CAT---TTTTAGCAT------AT--TTGGTATTG--ACC----TT-ATTTACTAG-----TCAGTA--ACTGTGTCAACGCGTCCTATTGATTCGG-TAACATAAGA-----AA-TG-CCT----TTA--TCA-TA-ATCA----ATT--------TATAAA---TTAGC-------T------------GT------T-------CCGACCGACTTTGA-AGTAATTACGTGTTTTTATCAA--TTTTCACTATTTTATT-TTT---TTT-GCTCCTA
gi|9 : ctgcatttgagttagttagtatgcatttgccttgatttgaaaaattctggacattcatacgTTATCCATGAA---ACATTACCGTTGAAAATATAATTTGAC------------GCCTGA----ATATTGTAACATGA-TTATAAC---------T--TTAGAGCTG--A-C----TTTATTTACTAG-----TCACCA--TCTAATTCA--GTGTCGTAATGATTTGT-TTGCAAAATA-----GA-TG-TCT----TTA--T---TATAtct
blockSeqs : TTA T A A CTAGATGAATTA GTGA GTAA CAA T ACAATT AG ATGACTTT ACACGG C . ACG A G TAAATGCCTGTATTATACATGTGTATAACTTATAAATGAACTGTTTTATTGGTTGGAGA TAGAGAT G CT C TTG C AAGCAAATTATGT A A A TCTGTT TTAC C ACG AC T A GCTGTTACAAGT C . T AA TTT C C A G A AAAA A G GC A A CA CC G A G G T G GTAA TT TATTGGT A
blockSeqs : . T A C . . . GA T . . ATATTA GGCTG C . A . G GAATGACCTTTATTAAATGAAACTTGTAAATGAACATTTGGTATTAGCTGGGGA TCAAT G CT T . . TAGGGGTAAATAG . T A TTCCGT GTCA C AT AC . A CCTA T . T G TTG A C C . T AA T C TT A G CA C A A A . G A TAG . . C
blockSeqs : . A G A . . . . T . . ACGTT G G . C . A GAAATGCCTTTATCATAATCAATTTATAAATTAGCTGTTCCGACCGACTTTGAA TAGAT G CT C . . CAGATCAATAG . G A CTGT GTAA T GT GA . . ACAC . T . ACA C A C . A T T G TA T . . . . T . . G A
blockSeqs : . T A A . . . . G . . TTATT G C . G . G ATAGGCCTTTATAATTGACAATTTATAAATGAACAGTTGGTTTTGGCTGGGAA GCAGT G CT C . . GAGGTTAATAG . T A TATT ATCA C AT T . . A T T A
blockSeqs : . T A C . . . . T . . ACCTT G A . G . G AAACGCCTTTGTAATATATGACATATAAATGAACTTTGGTTGGGATATCAA TCAAT G CT C . . GAGATAAAAG . T A TCTT . C CC
blockSeqs : . A G A . . . . C . . ACTTT G C . G . G TAATTGCATTTTATTACATTTTTTTTTTTAAATGCACAGTTTTGAAG TCGGT A CT C . . GTAAATTTAT . T . AAT
blockSeqs : . T A C . . . . T . . ACT T G . C . A GAAATATGAATTAACTGTTGTATTTTTTTATTTGCGGGAAA TCAAT C C . . . AGGTGAACA .
blockSeqs : . A G T . . . . T . . ACT T C . G . A ATATTATAAATGATCAGTTGATAATG TCAA . T . . .
blockSeqs : . G A . . . . . . ATT . . . . . . . . . . . .
blockSeqCons : G***** ** TCGAT** CT GAGATNAATAG******** TNNT****** GTNA* AT*
originalCons : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GTGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTNA---G--TAAATC-ATAGTTC-CTTTTCAAGTCTATAGTTCAG--T--C-GTTGGTGCTTTACGT-A-AACAAAAAT-AATATACTGATG-TAGACANCTGTTACA--CATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTCNTAGCCATTCC-CTNGAATGATAGTT-TAGCCTCTG--AC-------CTCANTGAAAGTAAATATGTGTTTAT
finalCons : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAGG-----CACTA--TCTGAGTCA--GTGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-A-TATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGAT--TTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTTGAGATNAATAG--------TTC-CTTTTCAAGTCTATAGTTCAGTNNT------GGTGCTTTACGTNA-AACAAAAAT-AATATACTGATG-TAGACANCTGTTACA--CATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTCNTAGCCATTCC-CTNGAATGATAGTT-TAGCCTCTG--AC-------CTCANTGAAAGTAAATATGTGTTTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATCAGTCTGTGTATCCATGGAACTTAGAAAAATAGATAAATAGAAGTACAGCATAAAGCGTGCATTGACAATATTCAGTATGTTTCAAGCTGGGATGCATGTCTTGTTATATGAAAAATTCT
Alignments
lowQualScore : 222222222222 111 111111 333333333333 222222 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111 11111 222222 1111 222222222222 1 1111 11 3333 11 11 1 1111 11 4444444
lowQualScore : 777 1 1 1 222222222222 8888 8888 222 4 111111 55 000000000000 111111 1 55 666 0 0 4 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 00 8888888 4 33 0 4 777 4 0 2 444 777 66 5 5 1 0 77777 5 111111 1 6 0 444 4444 000000000000 6 3 4444 77 0 333 1 1 8 8 1 2222 1 1 11 1 6 11 22 6 1 6 0 1 7 0 5555 88 3333333 1
lowQualScore : ... . . . ............ .... .... ... . ...... .. ............ ...... . .. ... . . . . .................................................................................................................... . .. ....... . .. . . ... . . . ... ... .. . . . . ..... . ...... . . . ... .... ............ . . .... .. . ... . . . . . .... . . .. . . .. .. . . . . . . . .... .. ....... .
lowQualScore : 000 2 2 9 888888888888 5555 5555 555 7 555555 55 666666666666 000000 6 55 222 7 7 0 4 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 7 66 7777777 1 22 7 1 000 0 1 0 666 888 00 6 0 6 1 66666 7 777777 5 7 8 000 2222 888888888888 5 3 8888 00 2 222 0 0 2 0 4 8888 4 4 22 0 5 88 55 5 0 5 0 0 0 2 3333 33 3333333 0
consensus : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GTGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-ATATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTT--GAG---GTNAATAGTTC-CTTTTCAAGTCTATAGTTCAG--TNNTG-GTGCTTTACGT-AAACAAAAAT-AATATACTGATG-T-AGACANCTGTTACA--CATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTCNTAGCCATTCC-CTNGAATGATAGTT-TAGCCTCTG--AC-------CTCANTGAAAGTAAATATGTGTTTAT
Reference ( family-4948 ) : AAAGTTATCCATGAA---CGGTCACCTTTACAAATATCGTTAGAT------------GCCTGA----ATGTC----CAT---TTTTAGCAT------GT--TTAGAACTG--A-C----TT-ATTTACTAG-----GCACTA--TCTGAGTCA--GTGTCCTATTGATTCGT-TTACGTAA-A-----AA-TG-CCT----TTA--T-ATATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGA---------A-AGCAATCACGCGTTACTATCGA--TTTTGACTATTTGATTCCTT---TTT-GCTTCTACACAGTACGTTT--GAG---ATNAATAGTTC-CTTTTCAAGTCTATAGTTCAG--TNNTG-GTGCTTTACGTNAAACAAAAAT-AATATACTGATG-T-AGACANCTGTTACA--CATCTTCG-CAGTTT-T--TCTA-TGTNTNTATTATAAAANAGCTATTTGNTTTCACTG-AAGTCAATGAT--TAAAAACAATTCTTCCTCGGGGATGNCTNTTGACACGAAAAACACAAA-CAGTTGATCGAGACGAATTCNTAGCCATTCC-CTNGAATGATAGTT-TAGCCTCTG--AC-------CTCANTGAAAGTAAATATGTGTTTAT
gi|1 : AAAGTTATCCATGAA---CGTTCATCTTTATACATGTCATTAGAT------------ACCTTA----ATGCC----TAT---TTT-AAAAT------GT--TTAGAACTGT-A-A----AT-ATTCAATAG-------ATTAATTACGAAAGA--ACTTCCT-TT-ATTC---TTAAATAA-ACAATAAACTG-TTTGATATTAAAT-ATATAT-G----ACA--------TAAAAA---TGAACAATAA--TGA----TTG---GT------T-------TGGA---------A-A-CAATCGCGC---------------------------TTCCAT---TTT-GCTTATACACAAAAC---------------AAT----------TCAAGTCTA------GG--T--TA-GTGCTTTAC------------T-AA-------ATG-TTAAGCATCTGTTACA--CGCCGTAGATAATTTGTAATCTA-TGTAATTATAAAAAAAAAGCTATTTGATTTTACTG-AAGTCATTGAT--T-CAAACAATTCTTCGACGGGAACGACTTTTGACAAGAAAAATAC-AA-CAGCTGATCGACATGAGTTCTTAGTCTTTCC-CTTG---GATAGTT-T---CTTAA--AC-------TTCATTGAGAGTAAATATGTGTTTAT
gi|10 : ggaatcaactttaaaagttacgtcaacggtgcatacgtcttgttatttgcaaaattatatacatttattcataagaatcatattaaagCTGA----ATGTC----TAT---TGTTAGCAT------GT--TTAGAACTG--A-CG---TT-ATTAACTAGACACGGCACTA--TCTGAGGCA--ATGTCCTATTGATTCGT-TTAC---------------------------------ATAT-----------------TATAAA---TGA----------------TCA---GT------T-------GATA---------ATGGCTATAACGCGTTACTGTCAA--TTTTGACTATTTGATT-CTG---TTT-ACTTCTGTACCGTACGTAT---AG---GTGAACA-TTC-CTTTACAAGTATGTAGATCAA--CTGTG-GTGCTTTACTTACAGCATAAAT-AATAgtataatcacaattcatctgccatacaaaaattaagact
gi|11 : AAATTGTCCATGAA---CGGCAACCTTTACAAATAACATT
gi|12 : tagataaatagaagtacagaaataaaatgtaatttgattaagtataatcaatctaaaagaagtctagtttcatacatttaagaagcaagacatttcaaattcaggatgcttttttttgtatttgcgatattttgtacattagagatcatgagtACAAAAAACA---A-CAGTTGATCGCGATGAATTCACAGCCAATCT-CTTGGATTTTGTTT-TAGCTGCTGTTACTATTGGTCTCAATGAAAAAAAACATGTGTTCAT
gi|13 : acaTT-T--TCTAATTTTTTTTTTATTAACCAGCTATTTGCTTT-ACTGGAATTCAATGAT--T-AAAACAATTCTTTCACGGGGATGGCTACTAACAC-----ACACAAACCGGTTGATCGAGAC-CATTCATGACCATGCCGCTGGAATAATAGTtgcatacacaaatttcacttttcatacaaaagcaagac
gi|15 : ATAAA---TCAAC-------TGTT---TTGTAGGT------T-------GGGA---------A--GTAATCACGGGTTATTGTAGAGATTTTGGCTATTTGATTCCCA---TTT-GGTTCTATATAGTACGTTT--CAG---ATCAATAGTTC-CTTTTC
gi|16 : actaTTTGCTTTAACTG-AAGTCATTAAT--AAAAAACAACTCTTCCTCGCGCATGTTTATTGAC
gi|2 : AAAGGTATCCATGAA---CGGTGACCTTTACAAATAGCATTATAC------------GTCTGA----ATGTC----CAT---ATTTAGCAT------GT--TTAAAACTG--A-C-----T-ATCTACTAG-----GCACTA--TCTGAGTAA--CTGTCCCATTGATTCGT-TTACGTAA-A-----AA-CG-CCT----TTG--TAATATAT-G----ACA--------TATAAA---TGAAC-------T------TTG---GT------T-------GGGATATC-----A-AGCAATTACGCGTTATTATAGA--TTTTGACTATTTGATTTCTT---TTT-GCTTCTACACAGCATGTTT--AAGCAAATT-ATGTTTC-CTTTTCAAGCGTTTAATTCAATCTGTTG-GTGATTCAGGTCAAACAAAAGT-AATATACTGATG-T--GACACCTA--------AT-TTCG-CAGTTT-T--TCT--TGTTTGTATTATAAAAAAGCTATTTGATTTCACTG-AGGTCAATGATAAAAAAAACAATTCTTCCTCGGGGATGTATTTTGACCCGAAAAACACAAA--AATTGAACAAGACAAATTCTTA-TCATTCC-CTGGAATGATAGTTGTAACCTCTG--AC-------CTTACTGAAAGTAATTATTTGTATAT
gi|3 : ---CGGTTACAAATACAAATATCGTTCGAT------------GTCTGAGTGAATGTT----TAT---TTT-AGCATACAATTGTAGTTAGTATTGTTA------TT-ATTTGCTAT-----GCAGCA--TCTGAATCA--GTTTCCTATTGATTCGT-TTACGTAA-G-----AA--------------------ATAT-G----A-A--------T-TAACTGTTGTAT-------T------TT-----T------TTATTTGCGGGA---------A-AGCAATCAAATATTATAAGCAG--TTTTGGCTGTTTGATTCCTT---TTTCGATTTTACTCCGTACATTT--TAG---
gi|4 : tttttaataacttgtgagaaaatctgatatttgaatgaccatagttcagtagatgtattcattgaacttcaactgtagaaaagtaggaaaatacaagtaaagcaaaaacagtttgtacagacagaattcagtaaaatttacctcgaaggagtatatttccctacatatgagaagtaacaagtaattattaaaatagaaaattaatatatttataaggatgcatttgctttgtatttcattctttatagatcaaagaaaataatcaattgAAAGTTCTCCATGAA---CAGTCACCTGTGCAAAAAGCATTAGTT------------GTCTGG----ATGTC----CA----TTTTAACAT------GG--TTAAAAATG--A-C-----T-ATTTACTAAGGCT-GCACTA--TCTGAGCCG--GTGTCGTATCAATT-------CATAA-G-----AA-TGACCT----TTA--T--TAAAT-G----AAACT------TGTAAA---TGAACA------T------TTG---GTATTAGCT-------GGG----------G-AGCAAGCAAACGTTACTA-------TTTGA------GA--CCCT---TTT-GCATCTACACAGAACGTTTTAGGG---GTAAATAGCTC-TTTTTCAAGTCTATAGGTCAG---AAT--GTACTTTGTGTAAAATGAAAAT-Ag
gi|5 : ttttaacgaatctgtgaaacaaatagactggatcagtccatgtacccatcgaacttttagaaaaatagatgtacagcaaaaaaagtgtgcattgacagaattcagtacaatcaatctgaaaggagtctactttcctacatttaagaagcaagtatgatacacatattatcttgttatttgctcactgatcgaccttatagatcataagTGAA---CAGTCACCTTCACAGATATCATTAAATCTAGATGAATTAGTCTGA----ATGTC----CACCAATTTGAACAT------GT--TTAGAACTG--A-TGACTTT-ATTTACTA--------------TCCGAGCTT--GTACCATACTCAT--GTATTACGTTA-A-----TA-GG-CCT----TTA--T-A-AT-T-G----ACAATT-----TATAAA---TGAACAGTTGGTT------TTG---GC------T-------GGGA---------A--GCAATCAGGCGTTACCATCAA--TTTTAACTATTTGAGCCCTT---TTT-GCTTCCACATTGTACGTTT--GAG---ATAAA-AGTTCATTTTTCAAGTCTATAGTTCAG--TATTG-ATGGATTGC------CAAAAACGAATATACTGATG-T-AAACAGCTGTTACAAGTATCTTCG-CAGATT-T--CTTG-TATACATATTTTAAAACAGTTATGTGTTTTCACTA-AGGTCAATAAT--T-AAAACTATTCTTCCTCCGGAAT
gi|6 : aaagcaagaatttcacaaatttaggatgcatttgtcttatttgcgcaattgtatacattataggtcagtagaaactAATTATACACAAA---TGTTCACCATAACAAACATAGATCGAT------------GCCTGA----ATGTT----CAA---TTTTAGCCT------GT--TTAGAATTT--A-TA---TTAATCTATCAG-----GCAATA--TCTAATTCA--CAATCCTATTGATTCTT-CCATGTAATA-----AA-TG-CCTGTA-TTA--T-ACATGT-GTATAACT--------TATAAA---TGAAC-------TGTTTTATTG---GT------T--------GGA---------G-AGCAAGCATGTGTTATAATCGG--TTTT-AC------------T---TTT-GCT--AACAAAGTATGTTT--GAG---GTTAATAGTTC-CTTCTTAAGTCTATAGTTT-G--TTCCGTGTGTTTTATATCAAACAAAACC-GATACGATGATGTT-AGACA------ACA--CATTTT
gi|7 : aactggaaggaatacatttccttactgttgggaagcaagtttacctcaaagtgaggatgcatttgccttgttgtttgcaatgttctgtacatagatcatcagacAAAGTTAGCTCTGAA---GGGTCACATTTACAAAAACCATTAGTT------------GTCTGA----ATGTC----GAT---TTTCAGCAT------GT--TTAGAATTG--A-T----T---TTTAATAG-----GCACAT--TCTGAGTC-------------GATTTGT-TCTGGGAATA-----AT-TG-CAT----TT--------TAT-T----ACATTTTTTTTTTTAAA---TGCAC----------------A---GT------T-------TTGA---------A-GGTAATCATGGGTTACTATCAA-------A-TATTTGGTTCCTTTTGTTT-GTTTCTACAAAGCATGT-----AA---ATT--TATTTA-TTTTT----TTTATAGTTCAG--TCTTG-ATGCTTTttcgtg
gi|8 : gaacttatagaaatatagataaatataagtacagcatccttgtgtgtgcattaccagaattcggcataatcaacaaagaagggatatatttctctacaattaggatgcatatgtcctgttatttgcaaaaattctgttcatttacatgatattatatgaatcataatAAAATTATC---GAATTACGGTCACGAATACAAATATCGTTCAAT------------ACCGGA----ATGTC----CAT---TTTTAGCAT------AT--TTGGTATTG--ACC----TT-ATTTACTAG-----TCAGTA--ACTGTGTCAACGCGTCCTATTGATTCGG-TAACATAAGA-----AA-TG-CCT----TTA--TCATA-ATCA----ATT--------TATAAA---TTAGC-------T------------GT------T-------CCGACCGACTTTGA-AGTAATTACGTGTTTTTATCAA--TTTTCACTATTTTATT-TTT---TTT-GCTCCTA
gi|9 : ctgcatttgagttagttagtatgcatttgccttgatttgaaaaattctggacattcatacgTTATCCATGAA---ACATTACCGTTGAAAATATAATTTGAC------------GCCTGA----ATATTGTAACATGA-TTATAAC---------T--TTAGAGCTG--A-C----TTTATTTACTAG-----TCACCA--TCTAATTCA--GTGTCGTAATGATTTGT-TTGCAAAATA-----GA-TG-TCT----TTA--T--TATAtct
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATCAGTCTGTGTATCCATGGAACTTAGAAAAATAGATAAATAGAAGTACAGCATAAAGCGTGCATTGACAATATTCAGTATGTTTCAAGCTGGGATGCATGTCTTGTTATATGAAAAATTCT