lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111
lowQualScore : 1 22222222 5555555555555555555555555555555555555555555555555555555555555555555555 22 11 11 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 33333 444 222222 111 111 5555555555555555555555555555555555555555555 2222222 1111 3333333333333 1111 2222222222 11 333
lowQualScore : 4444 4444 8 3 1 4 2 2 66666666 2 4444444444444444444444444444444444444444444444444444444444444444444444 66 7 33 55 00 2 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 6 22222 3 222 888888 777 7 2 3 7777 66 777 1 2222222222222222222222222222222222222222222 0 2222222 4 6 0 4 4 9999 1 55 2222 7777777777777 1111 3333333333 44 66 2 55555 222 4444 4444
lowQualScore : .... .... . . . . . . ........ . ...................................................................... .. . .. .. .. . . ....................................................................................... . . ..... . ... ...... ... . . . .... .. ... . ........................................... . ....... . . . . . .... . .. .... ............. .... .......... .. .. . ..... ... .... ....
lowQualScore : 5555 2222 5 6 9 4 0 2 00000000 3 0000000000000000000000000000000000000000000000000000000000000000000000 22 0 00 00 00 5 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 8 22222 2 888 888888 555 0 5 2 2222 88 555 2 0000000000000000000000000000000000000000000 2 7777777 4 7 7 0 0 9999 4 00 9999 9999999999999 4444 3333333333 11 88 7 00000 999 2222 5555
consensus : AGTCTT----GAT----CATCTGCGACGCTTGCTTTTCT-AAAAG-ACA-ANCG-----TCTTGACANGNT---------CGGCCG---AGAAT-AAAAATNGTTT------AGCGA-AAATC--GAATAANGTTTCCGATTGGTTGATTCAAACAATCGGNCTACCTCGGNNATNT-CCAT------------AGT-------------T-TATT------------TCTAN--AT--TCA-T-----TAT-----TT-TTTTATTATNAGATANTTTCTA--TTTGACAAAG-CATCT------TGTGC---AAGATAACTGCNATGACTTCCGTCCGAATAA-A-TATTTTTAN------AT-TTTA------------TT-AAACATAACC---GCAG-G-GGTTTGTTT-GTNTCAGCCAA-T-CAGA--TCTTACT--TCCA-G-ATTCAA-----A-CGTTT---TTTC-------N--GCA-CAANNTGT-CAAGACGTTT-----GTCTTTTAGAAAAGCAAGCGTCGCAGATG----ATC----AAGACT
Reference ( gi|3 ) : AGTCTT----GAT----CATATGCGATGCTTGCTTTTCT-AACAG-ACA-ACCT-----TCTTGACAAGAC---------CGGTCG---AGAAT-AAAAATAATTTTTATTTACCAA-AAATC--GAATAACGTTTTTGATTGATTGATTCAAACAATCGTACTACCATGGAGATGT-CCAC------------AGT-------------T-TATT------------TCTGA--AT--TCA-T-----TAT-----TT-TTTTATTATTAGATATTTTCTA--T--GACAAAAATATCT------TGTAC---AAGATAACTGCCATGACTTCCGTCCGAATAA-A-TATTTTTAT------AT-TTTA------------TT--------------GCAG-G-GGTTTGTTT-GTTTCAGCCAA-T-CAGA--TCTTACT--TCCA-A-ATCCAA-----A-CGTTT---CTTC-------A--GCA-CAACTTGT-CAAGACGTTT-----GTCTTTTAGAAAAGCAAGCGTCGTTTATG----ATC----AAGACT
gi|1 : AGTCTT----GAT----GATATGAGACTCTTGCTTTTCT-AAAAA-ACATACCA-----T-TTGACATGTT---------CGGCCG---AGTAT-GAAAATC-TTTTTATTAAGCGA-AAATC--GAATAACGTTTTTGATTTGTTGATTCAAACAGTCAAGCTACCTGGGATATTT-CCATTCTATATAAAAAAGTATCGTTTGGATGTT-TATT------------TCTAT--AC--TCA-T-----TAT-----TT---------TTAGATGTTTTCTA--T--GACAAAG--ATCT------TATAC---AAGACAACTGCCATGACTTCCGTCCGAATAATT-TTTTTTTAA------AT-TTTATCATAACAACCGTT--------------GGAGAG-GG--TGTTT-GTTTTATCCAC-T-CAGA--TCTTACT--TCC--G-ATTCAA-----A-CG-AT---CTTC-------T--GCA-CAACTTCT-CAATATATTT-----ATCTATTAGAAAAGCAAGCGTCGCATATG----ATT----AAGAC
gi|4 : AGTCTT----GATGGATCATCTGCGACGATTTCATTTCT-AAAAG-ACA-AATG-----TCTTAAAATGCT---------CGACCG---GGAAT-AAAAATG---------TAACAGTAAAT---------------TGATTAGTTGATTCAAACGATCGGACTACCTCGGAAATGT-CCA---------------T-------------TATATT------------TCAAAAGATTATCGTT-----TATATTCATT-TTTTATTATAAGATAGTTTCTATTT--GAC--AAACATCTTACACATGTGC---AAGATAACTACAATGACTTCTGTCTGATTAA-A-TGTTTTCATTAAAACATAATTG------------TT--------------GCAG-A-GG-TGGCTT-TTTTCAGTCAG-T-CAAG--TCTTACT--TCCA-G-ATTCAA-----A-TGTTT---CTTC-------T--GTA-CAAC-------------TT-----GTCTTTTAGAAAAGCAAACGTCGCAGATG----ATC----AAGAC
gi|17 : AGTCTT----GAT----CATATGCGATGCTTGCTTTTCT-AACAG-ACA-ACCT-----T
gi|9 : AGTCTT----GAT----CATCGTCGACG--------TCT-AAATG-ACA-ATCG-----TCTTGACATGAa
gi|21 : ctcggccaatcaaactcttacgtccggattcacactcttctctgcgtaAGTCTT----GAT----CATCTGCGACGCTTGCTTTTCT-GAAAG-AC
gi|6 : tgAGTCTT----GGT----CATCTGCGACGCTTCCTTTTCTAAATAA-GTA-A-CG-----TCTTGAag
gi|14 : tataAGTCTTATGTGAT----CATCTGCGATGCTTGCTTGTCT-ATCAA-ACA-Aacattgatgctttgaaaacaattaactgtactctgatatgtttctgaatggtgcattcaaataatggatctac
gi|13 : ctAGTCTA----GAT----CATATTCGACGCTTGCTTTTCT-acgaatgaacattttgttc
gi|1 : tacttccggtgcataccactaatctgtactattttcgataGTCTT----AAT----CATATGCGACGCTTGCTTTTCT-AATAG-ATA-AATA-----TATTGAGAAG
gi|4 : agtcttgatgatatgagactcttgcttttctaaaaaacataccatttgacatgttcggccgagtatgaaaatctttttattaagcgaaaatcgaataacgtttttgatttgttgattcaaacagtcaagctacctgggatatttccattctatataaaaaagtatcgtttggatgtttatttctatactcattatttttagatgttttctatgacaaagatcttatacaagacaactgccatgacttccgtccgaataatttttttttaaattttatcataacaaccgttggagagggtgtttgttttatccactcagatcttacttccgattcaaacgatcttctgcacaaGTCTT----GAT----CATCTGCGACGTTTGCTTTTCT-AAAAG-ACA-A
gi|16 : agtcttgatggatcatctgcgacgatttcatttctaaaagacaaatgtcttaaaatgctcgaccgggaataaaaatgtaacagtaaattgattagttgattcaaacgatcggactacctcggaaatgtccattatatttcaaaagattatcgtttatattcattttttattataagatagtttctatttgacaaacatcttacacatgtgcaagataactacaatgacttctgtctgattaaatgttttcattaaaacataattgttgcagaggtggcttttttcagtcagtcaagtcttacttccagattcaaatgtttcttctgtacaacGTCTT----GAT----CATGTTCGACGCTTGCATTTCT-ATAAG-ACA-AACG-----TCTCGACA
gi|7 : GTTTT----GCT----CATCTTCAAGGCATGCTTTTCT-AAAAC-ACA-A
gi|20 : tttgtttgttttggcaaccaagtttcacctcctgcttcatatttttttctacataaagtgtccagccatGTCTC----GAT----CATCTGCGACGCTTGCTTTTCT-GGAAG-ACG-A
gi|2 : tTCTT----GAT----CATCTGTGATGCTTGCTTTTCT-ACAAG-ACA-AAC----------AACAGGACAATTTTTTCC--TTG---AAAATTAAACATAA-----------CAA-TATTT--TGATAAGATTTCCAATTGGTTGATTCAGACAATTGGTCTACCTCAGCGATTTTCCAT------------AGT-------------A-TATTAGAAGACTATTGTTTAG--ATGTTTA-TATCTATAT-----TCGTTTTCTCTTTAGATACTTTCTA--TTTGACAAA--CATCT------TGGACTGTAATA-AAATATCA-GAATATCGT---AATAA-AATATTTTT-T------AA-TTTA------------TTTAAACATAACT---GTAA-GAGGCGTGTTTTGTCTCAGCAAAAT-CAGA--TCATAGT--TCCA-G-ATTCAA-----A-TTTTT---TTCC-------T--ACA-CAAATTGT-GAAAACATTT-----GT-TTATAGAAAAGCAAGTGTGGCAGATG----ATC----AAca
gi|8 : aTCTT----GAT----CATCAGTGACGCTTGCTTTTCT-GA-AG-------TT-----TCTTGACAa
gi|19 : tgtttgtattagctaactgaatatttctgtttcaatattttttttcagcaataagTCTT----GAT----CATCTCCGACGTTTGCTTTTGT-AA-AG-GCA-At
gi|22 : TCTT----GAT----CATCTGCGACGTTTGCATGTCT-AAAAG-gttataa
gi|5 : TT----GAT----CTTCTGCGACGCTTGCTTTTCT-AAAAG-ACA-ACCG-----ACTTGACA--------------GGTTGTGCAGAAG-AAAAAC-GTTT------------AAATCTTGAATCAAG-ATCTGATTGGCTGACATAAACA--CAT-CTGCAATGGTTATGT-
gi|2 : aagaccatctgttaaacgtttatttccacattcatagttattataagatagtttctatttgacaaacatcgtgtgccagataactgtaatgacggtcgaataaatatttttaaatttcattaaaTT----GAT----CATCTGCCACACTTGCTTTTCT--ATAA-ACA-AATG-----TTTTCACAA
gi|11 : atcttgatcatctgtgatgcttgcttttctacaagacaaacaacaggacaattttttccttgaaaattaaacataacaatattttgataagatttccaattggttgattcagacaattggtctacctcagcgattttccatagtatattagaagactattgtttagatgtttatatctatattcgttttctctttagatactttctatttgacaaacatcttggactgtaataaaatatcagaatatcgtaataaaatattttttaatttatttaaacataactgtaagaggcgtgttttgtctcagcaaaatcagatcatagttccagattcaaatttttttcctacacaaaAT----CATATTTGATGATTGCTTTTCT-AA-AGTACA-ATATAAAGGTTTTGACAa
gi|15 : acttcctgtttcaaaacgttttttggcacaaagCGACGCTTGCTTTTAT-GATAG-AAA-AACG-----TTTTGACAaa
gi|5 : attttttttctgcgcaaagGT-------------T-TATT------------TCCAC--AT--TCA-T-----AGT-----T------ATTATAAGATAGTTTCTA--TTTGACAAA--CATCG------TGTGC---CAGATAACTGTAATGAC----GGTCGAATAA-A-TATTTTTAA------AT-TTCA------------TTAAAACATAACCATTGCAG-A-TGT--GTTT-ATGTCAGCCAA-T-CAGA--TCTTGAT--TCAA-G-ATTTAA-----A-CGTTTTT-CTTC-------T--GCA-CAACCTGT-CAAGTCGGTT-----GTCTTTTAGAAAAGCAAGCGTCGCAGAAG----ATC----AAaag
gi|7 : aagaccatctgttaaacTTTGTTT-GTTTTGGC-AA-C-CAAG--TTTCACC--TCCT-G-CTTCAT-----A-T-TTT---TTTC-------T--ACA-TAAAGTGT-CCAGCCATTT-----GTGTTTTAGAAAAGCATGCCTTGAAGATG----AGC----AAAAC
gi|4 : TCGTTT-GAATCAACTAA-T-CA-A--T-TTACT--GTTA-C-ATT------------TTT---ATTCCCGGTCGA--GCA-----TT-T-TAAGACATTT-----GTCTTTTAGAAATGAAATCGTCGCAGATGATCCATC----AAGACT
gi|2 : TTGTCT-GAATCAACCAA-T-TGGAAATCTTA----TCAA-A-AT---ATTGTTA-TGTTTAATTTTC-------AAGGAA-AAAATTGT-CCTGTTGTTT-----GTCTTGTAGAAAAGCAAGCATCACAGATG----ATC----AAGAtcggactacctcggaaatgtccattatatttcaaaagattatcgtttatattcattttttattataagatagtttctatttgacaaacatcttacacatgtgcaagataactacaatgacttctgtctgattaaatgttttcattaaaacataattgttgcagaggtggcttttttcagtcagtcaagtcttacttccagattcaaatgtttcttctgtacaacttgtcttttagaaaagcaaacgtcgcagatgatcaagac
gi|8 : aTGTTT-GTATTAGCTAA-C-TGAA--TATTTCTGTTTCA-ATATT------------TTT---TTTC-------A--GCA-ATAAGTGT-CAAGAAACTT-----------CAGAAAAGCAAGCGTCACTGATG----ATC----AAGAttggtctacctcagcgattttccatagtatattagaagactattgtttagatgtttatatctatattcgttttctctttagatactttctatttgacaaacatcttggactgtaataaaatatcagaatatcgtaataaaatattttttaatttatttaaacataactgtaagaggcgtgttttgtctcagcaaaatcagatcatagttccagattcaaatttttttcctacacaaattgtgaaaacatttgtttatagaaaagcaagtgtggcagatgatcaaa
gi|12 : GTCT-GTGTAAGCCAA-TACA-A--TCTT--T--GCCATG-AT-------------TTT---TTTC-------A--GCA-CAGTGTGT-CAATACATTT-----GTATTTTACAAACGTAAGCGt
gi|9 : TCGGCCAA-T-CAAAC-TCTTACG--TCCG-G-ATTCAC-----A-CTCTT---CT-C-------T--GCG-TATCATGT-CAAGACGATT-----GTCATTTAGA--------CGTCGACGATG----ATC----AAGACT
gi|11 : cACT--TCCT-G-TTTCAA-----AACGTTT---TTT--------G--GCA-CAAAGTGT-CAAAACCTTTATATTGTACTTTAGAAAAGCAATCATCAAATATG----AT
gi|15 : TTT---TTTC-------T--GCG-CAAAGTGT-CAAAACGTTT-----TTCTATCATAAAAGCAAGCGTCGaa
gi|6 : attT---TTTC-------AAAGCATCAA--TGTTCAAGACGTTA-----CTTATTTAGAAAAGGAAGCGTCGCAGATG----ACC----AAGACTaag
gi|1 : tataTC-------G--GCC-GAACATGT-CAAATGGTAT-----GTTTTTTAGAAAAGCAAGAGTCTCATATC----ATC----AAGACTcaattaactgtactctgatatgtttctgaatggtgcattcaaataatggatctac
gi|16 : TGT-CGAGACGTTT-----GTCTTATAGAAATGCAAGCGTCGAACATG----ATC----AAGACgtatgaaaatctttttattaagcgaaaatcgaataacgtttttgatttgttgattcaaacagtcaagctacctgggatatttccattctatataaaaaagtatcgtttggatgtttatttctatactcattatttttagatgttttctatgacaaagatcttatacaagacaactgccatgacttccgtccgaataatttttttttaaattttatcataacaaccgttggagagggtgtttgttttatccactcagatcttacttccgattcaaacgatcttctgcacaacttctcaatatatttatctattagaaaagcaagcgtcgcatatgattaagac
gi|14 : CGTTT-----GTTTGATAGACAAGCAAGCATCGCAGATG----ATCACATAAGACT
gi|20 : ctTTC-----GTCTTCCAGAAAAGCAAGCGTCGCAGATG----ATC----GAGACaatgaacattttgttc
gi|17 : TT-----GTCTGTTAGAAAAGCAAGCATCGCATATG----ATC----AAGACTca
gi|19 : aaggTT-----GCCTTT-ACAAAAGCAAACGTCGGAGATG----ATC----AAGAa
gi|21 : -----GTCTTTCAGAAAAGCAAGCGTCGCAGATG----ATC----AAGACTgttataa
gi|22 : tgCTTTTAGACATGCAAACGTCGCAGATG----ATC----AAGAag
gi|13 : AGAAAAGCAAGCGTCGAATATG----ATC----TAGACT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TTCTTCTTGAAAAAAAGGTAACAGGATTCTGATAAATATTCTAATTGGTTGATTTTAAACAACCGCACTGCCAAAGTGATTTCCATAATGTTA
Unaligned ( gi|18 ): TGACCATTTGTTGATTGACTGGTTTCTATAAGAAAAACAACAGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 7777777777777777777 7777777777777777777777777777777777777777777777777777777 11111111 333 222222 111 111 3333333333333333333333333 11111 111
lowQualScore : 8888 5 1 1 8 99 1 3 55555 6 3333333333333333333 6 66 4 6 44 44 22 1 8 0000000000000000000000000000000000000000000000000000000 8 1 555 0 66666666 1 66 444 333333 444 3 1 0 11 3 222 8 0 5555555555555555555555555 55555 5 1 0 4 4 2 4 99 4 000 55 1 55 1 77777 1 0 7777
lowQualScore : .... . . . . .. . . ..... . ................... . .. . . .. .. .. . . ....................................................... . . ... . ........ . .. ... ...... ... . . . .. . ... . . ......................... ..... . . . . . . . .. . ... .. . .. . ..... . . ....
lowQualScore : 5555 7 0 4 0 00 0 2 22222 7 5555555555555555555 7 22 8 7 77 66 00 0 0 5555555555555555555555555555555555555555555555555555555 0 0 888 8 00000000 0 44 444 000000 000 8 0 8 88 2 222 8 8 2222222222222222222222222 88888 0 0 1 4 4 7 4 00 0 444 00 0 22 4 11111 9 8 7777
consensus : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGC--C--GAGAAT-AAAAATG-TTT------AACAANANTCTGATAANGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGATTT-CCATT-TAT-T-AAA-A--------------------------G-------------T-TTATT-TCTATATTCATTATTTTTTTATTATAAGATANTTTCTATTTGACAAA--CATCT------TG---TGCAAGATAACTGCCATGACTTCCGTCCGAATAA-A-TATTTTTAAATTTTATTA-AA-CATAA---CC---GC-----AGG-GGTTTGTTT-GTNTCAGCCAA-T-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTTT--TCTGCACAANGTGTCAAGACGTTT-----GTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
Reference ( family-4931 ) : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-NGNTCGGC--C--GAGAAT-AAAAATNGTTT------AGCGAAAATCGAATAANGTTTCCGATTGGTTGA-TTCAAACAATCGGNCTACCTCGGNNATNT-CCAT------------A--------------------------G-------------T-TTATT-TCTANATTCATTATTTTTTTATTATNAGATANTTTCTATTTGACAAAG-CATCT------TG---TGCAAGATAACTGCNATGACTTCCGTCCGAATAA-A-TATTTTTANATTTTATTA-AA-CATAA---CC---GC-----AGG-GGTTTGTTT-GTNTCAGCCAA-T-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTTT--TCNGCACAANNTGTCAAGACGTTT-----GTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
gi|1 : AGTCTTGAT----GATATGAGACTCTTGCTTTTCTAAAAAACATACCAT-TTG-ACA-TGTTCGGC--C--GAGTAT-GAAAATCTTTTTATTA-AGCGAAAATCGAATAACGTTTTTGATTTGTTGA-TTCAAACAGTCAAGCTACCTGGGATATTT-CCATTCTATATAAAAAA--------------------------GTATCGTTTGGATGT-TTATT-TCTATACTCATTATTTTT--------AGATGTTTTCTA--TGACAAAG--ATCT------TA---TACAAGACAACTGCCATGACTTCCGTCCGAATAATT-TTTTTTTAAATTTTATCATAA-C--AA---CC---GTTGGAGAGG-G---TGTTT-GTTTTATCCAC-T-CAGA-TCTTACTTCC--GATTCAA-A-CG-ATCT--TCTGCACAACTTCTCAATATATTT-----ATCTATTAGAAAAGCAAGCGTCGCATATGATT----AAGAC
gi|10 : -AAAAAAGGT--------AACAGGATTCTGATAAATATTCTAATTGGTTGATTTTAAACAACCGCACTGCCAAAGTGATTT-CCAT------------A--------------------------A-------------TGTTA
gi|11 : ttcttcttgaACTTCCT-GTTTCAA-AACGTTTTT--T-GGCACAAAGTGTCAAAACCTTTATATTGTACTTTAGAAAAGCAATCATCAAATATGAT
gi|12 : GTCT-GTGTAAGCCAA-TACA-A-TCTT--TGCCATGATT---------TTTT--TCAGCACAGTGTGTCAATACATTT-----GTATTTTACAAACGTAAGCGaa
gi|13 : AGTCTAGAT----CATATTCGACGCTTGCTTTTCT
gi|14 : tacttccggtgcataccactaatctgtactattttcgataACAAAATGTTCATTCGTTT-----GTTTGATAGACAAGCAAGCATCGCAGATGATCACATAAGACT
gi|15 : ctTTTTT--TCTGCGCAAAGTGTCAAAACGTTT-----TTCTATCATAAAAGCAAGCGTCGAAGtc
gi|16 : attTGTCGAGACGTTT-----GTCTTATAGAAATGCAAGCGTCGAACATGATC----AAGAC
gi|17 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACC
gi|19 : aaTCTTGAT----CATCTCCGACGTTTGCTTTTGT-AAAGGCA-Aa
gi|2 : TCTTGAT----CATCTGTGATGCTTGCTTTTCTACAAGACA-AACAACAGG-ACA-ATTTTTTC--CTTGAAAATTAAACAT-----------AACAATATTTTGATAAGATTTCCAATTGGTTGA-TTCAGACAATTGGTCTACCTCAGCGATTTTCCAT------------AGTATATTAGAAGACTATTGTTTAGATG-------------T-TTATA-TCTATATTCGTTTTCTCTTTA------GATACTTTCTATTTGACAAA--CATCT------TGGACTGTAATA-AAATATCA-GAATATCGT---AATAA-AATATTTTTTAATTTATTTA-AA-CATAA---CT---GT-----AAGAGGCGTGTTTTGTCTCAGCAAAAT-CAGA-TCATAGTTCCA-GATTCAA-A-TTTTTTT--CCTACACAAATTGTGAAAACATTT-----GT-TTATAGAAAAGCAAGTGTGGCAGATGATC----AAgttataa
gi|20 : aTTC-----GTCTTCCAGAAAAGCAAGCGTCGCAGATGATC----GAGACa
gi|21 : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTGAAAGACca
gi|22 : tgTCTTGAT----CATCTGCGACGTTTGCATGTCTAAAAGag
gi|3 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACCTTCTTG-ACA-AGACCGGT--C--GAGAAT-AAAAATAATTTTTATTTACCAAAAATCGAATAACGTTTTTGATTGATTGA-TTCAAACAATCGTACTACCATGGAGATGT-CCAC------------A--------------------------G-------------T-TTATT-TCTGAATTCATTATTTTTTTATTATTAGATATTTTCTAT--GACAAAAATATCT------TG---TACAAGATAACTGCCATGACTTCCGTCCGAATAA-A-TATTTTTATATTTTATT------------------GC-----AGG-GGTTTGTTT-GTTTCAGCCAA-T-CAGA-TCTTACTTCCA-AATCCAA-A-CGTTTCT--TCAGCACAACTTGTCAAGACGTTT-----GTCTTTTAGAAAAGCAAGCGTCGTTTATGATC----AAGACT
gi|4 : AGTCTTGATGGATCATCTGCGACGATTTCATTTCTAAAAGACA-AATGTCTTA-AAA-TGCTCGAC--C--GGGAAT-AAAAATG---T------AAC--------AGTAAA-TT---GATTAGTTGA-TTCAAACGATCGGACTACCTCGGAAATGT-CCATTATATTTCAAA-A--------------------------G-------------A-TTATCGTTTATATTCA----TTTTTTATTATAAGATAGTTTCTATTTGACAAA--CATCTTACACATG---TGCAAGATAACTACAATGACTTCTGTCTGATTAA-A-TGTTTTCA----TTA--A-AA-CATAATTGTT---GC-----AGA-GG-TGGCTT-TTTTCAGTCAG-T-CAAG-TCTTACTTCCA-GATTCAA-A-TGTTTCT--TCTGTACAAC------------TT-----GTCTTTTAGAAAAGCAAACGTCGCAGATGATC----AAGAC
gi|5 : --------------------------G-------------T-TTATT-TCCACATTCATAGTT-----ATTATAAGATAGTTTCTATTTGACAAA--CATCG------TG---TGCCAGATAACTGTAATGAC----GGTCGAATAA-A-TATTTTTAAATTTCATTA-AAACATAA---CCATTGC-----AGA-TGT--GTTT-ATGTCAGCCAA-T-CAGA-TCTTGATTCAA-GATTTAA-A-CGTTTTTCTTCTGCACAACCTGTCAAGTCGGTT-----GTCTTTTAGAAAAGCAAGCGTCGCAGAAGATC----AA
gi|6 : aagaccatctgttaaacAGTCTTGGT----CATCTGCGACGCTTCCTTTTCTAAATAAGT-AACGTCTTGAACATTGAT--GCTTT--GAAAAC-AA-------TT------AACTGTACTCTGAT-ATGTTTCTGAATGGTGCA-TTCAAATAATGGATCTAC
gi|7 : tataTTTGTTT-GTTTTGGC-AA-C-CAAG-TTTCACCTCCT-GCTTCAT-A-T-TTTTT--TCTACATAAAGTGTCCAGCCATTT-----GTGTTTTAGAAAAGCATGCCTTGAAGATGAGC----AAAAC
gi|8 : TGTTT-GTATTAGCTAA-C-TGAA-TATTTCT-----GTTTCAATA-TTTTTTT--TCAGCAATAAGTGTCAAGAAACTT-----------CAGAAAAGCAAGCGTCACTGATGATC----AAGA
gi|9 : TCGGCCAA-T-CAAACTCTTACGTCCG-GATTCAC-A-C-TCTTC--TCTGCGTATCATGTCAAGACGATT-----GTCATTTAGA--------CGTCGACGATGATC----AAGACTt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGACCATTTGTTGATTGACTGGTTTCTATAAGAAAAACAACAGG
Alignments
lowQualScore : 111111111111111111111111111111
lowQualScore : 11111 66666666666666666 222222222222222222222222222222 22222222 11 222222 111 4444444444444444444444444 11 111
lowQualScore : 8888 5 1 1 8 99 1 3 55555 88 33333333333333333 1 1 3 7 44 6 22 44 1 8 0 888888888888888888888888888888 8 555 0 00000000 1 66 11 333333 444 3 0 5 1 3 8 8 6 0 3333333333333333333333333 66 5 1 44 4 2 4 99 4 000 55 2 66 1 77777 1 0 7777
lowQualScore : .... . . . . .. . . ..... .. ................. . . . . .. . .. .. . . . .............................. . ... . ........ . .. .. ...... ... . . . . . . . . . ......................... .. . . .. . . . .. . ... .. . .. . ..... . . ....
lowQualScore : 5555 7 0 4 0 44 0 2 22222 33 55555555555555555 0 0 0 3 33 7 00 66 0 0 6 444444444444444444444444444444 0 888 8 00000000 0 44 00 000000 000 8 8 0 0 2 0 0 0 8 2222222222222222222222222 88 0 0 66 4 7 4 00 0 444 00 5 22 4 11111 9 8 7777
consensus : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGC--C--GAGAAT-AAAAATG-------TTT------AACAGNANTCTGATAACGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--TATAT-T--AAAA-A-TAT-GTTT-GATGTTTATT-TCTATATTCATTATTTTTTTATTATAAGATANTTTCTATTTGACAAA--CATCT------TG---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTAAATTTTATT-A-AACATAA---CC---GC-----AGAGGTTTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
Reference ( family-4931 ) : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGC--C--GAGAAT-AAAAATG-------TTT------AACAANANTCTGATAANGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--T-TAT-T--AAAA---------------GTTTATT-TCTATATTCATTATTTTTTTATTATAAGATANTTTCTATTTGACAAA--CATCT------TG---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTAAATTTTATT-A-AACATAA---CC---GC-----AGGGGTTTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
gi|1 : AGTCTTGAT----GATATGAGACTCTTGCTTTTCTAAAAAACATACCAT-TTG-ACA-TGTTCGGC--C--GAGTAT-GAAAATC-------TTTTTATTAAGCGAAAATCGAATAACGTTTTTGATTTGTTGA-TTCAAACAGTCAAGCTACCTGGGATA-TTTCCAT--TCTATAT--AAAAAAGTATCGTTTGGATGTTTATT-TCTATACTCATTATTTTT--------AGATGTTTTCTA--TGACAAA--GATCT------TA---TACAAGACAACTGCCATGACTTCCGTCCGAAT-AATTTTTTTTTAAATTTTATC-ATAAC--AA---CC---GTTGGAGAGGG---TG-TTTGTTTTATC-CACT-CAGA-TCTTACTTCC--GATTCAA-A-CG-ATC--TTCTGCACAACTTCTCAATATAT-----TTATCTATTAGAAAAGCAAGCGTCGCATATGATT----AAGAC
gi|10 : GAA--AAAAAGG-------T--------AACAGGATTCTGATAAATATTCTAATTGGTTGATTTTAAACAACCGCACTGCCAAAGTGA-TTTCCAT--
gi|11 : ttcttcttACTTCCT-GTTTCAA-AACGTTTT--TTG-GCACAAAGTGTCAAAACCTTTATATTGTACTTTAGAAAAGCAATCATCAAATATGATaatgtta
gi|12 : G-TCTGTGTAAGC-CAATACA-A-TCTT--TGCCATGATT---------TTT--TTCAGCACAGTGTGTCAATACAT-----TTGTATTTTACAAACGTAAGCGaa
gi|13 : AGTCTAGAT----CATATTCGACGCTTGCTTTTCT
gi|14 : tacttccggtgcataccactaatctgtactattttcgataACAAAATGTTCATTCGT-----TTGTTTGATAGACAAGCAAGCATCGCAGATGATCACATAAGACT
gi|15 : ctTTTT--TTCTGCGCAAAGTGTCAAAACGT-----TTTTCTATCATAAAAGCAAGCGTCGAAGtc
gi|16 : attTGTCGAGACGT-----TTGTCTTATAGAAATGCAAGCGTCGAACATGATC----AAGAC
gi|17 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACC
gi|19 : aaTCTTGAT----CATCTCCGACGTTTGCTTTTGT-AAAGGCA-Aa
gi|2 : TCTTGAT----CATCTGTGATGCTTGCTTTTCTACAAGACA-AACAACAGG-ACA-ATTTTTTC--CTTGAAAATTAAACAT-----------------AACAATATTTTGATAAGATTTCCAATTGGTTGA-TTCAGACAATTGGTCTACCTCAGCGATTTTCCATAGTATAT-T--AGAAGACTATTGTTTAGATGTTTATA-TCTATATTCGTTTTCTCTTT------AGATACTTTCTATTTGACAAA--CATCT------TGGACTGTAATA-AAATATCA-GAATATCGT---AATAAA-ATATTTTTTAATTTATTT-A-AACATAA---CT---GTA----AGAGGCGTGTTTTGTCTCAGCAAAAT-CAGA-TCATAGTTCCA-GATTCAA-A-TTTTTT--TCCTACACAAATTGTGAAAACAT-----TTGT-TTATAGAAAAGCAAGTGTGGCAGATGATC----AAgttataa
gi|20 : aT-----TCGTCTTCCAGAAAAGCAAGCGTCGCAGATGATC----GAGACa
gi|21 : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTGAAAGACca
gi|22 : tgTCTTGAT----CATCTGCGACGTTTGCATGTCTAAAAGag
gi|3 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACCTTCTTG-ACA-AGACCGGT--C--GAGAAT-AAAAATAATTTTTATTT------ACCAAAAATCGAATAACGTTTTTGATTGATTGA-TTCAAACAATCGTACTACCATGGAGA-TGTCCAC--------------A---------------GTTTATT-TCTGAATTCATTATTTTTTTATTATTAGATATTTTCTAT--GACAAAAATATCT------TG---TACAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTATATTTTATT------------------GC-----AGGGGTTTG-TTTGTTTCAGC-CAAT-CAGA-TCTTACTTCCA-AATCCAA-A-CGTTTC--TTCAGCACAACTTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGTTTATGATC----AAGACT
gi|4 : AGTCTTGATGGATCATCTGCGACGATTTCATTTCTAAAAGACA-AATGTCTTA-AAA-TGCTCGAC--C--GGGAAT-AAAAATG-------T--------AACAGTAA----AT--------TGATTAGTTGA-TTCAAACGATCGGACTACCTCGGAAA-TGTCCAT--TATAT-TTCAAAA---------------GATTATCGTTTATATTCA----TTTTTTATTATAAGATAGTTTCTATTTGACAAA--CATCTTACACATG---TGCAAGATAACTACAATGACTTCTGTCTGATT-AA-ATGTTTTCA----TTA---A-AACATAATTGTT---GC-----AGAGG-TGG-CTTTTTTCAGT-CAGT-CAAG-TCTTACTTCCA-GATTCAA-A-TGTTTC--TTCTGTACAAC-----------------TTGTCTTTTAGAAAAGCAAACGTCGCAGATGATC----AAGAC
gi|5 : CCAT--C-TGT-T--AAAC---------------GTTTATT-TCCACATTCATAGTT-----ATTATAAGATAGTTTCTATTTGACAAA--CATCG------TG---TGCCAGATAACTGTAATGA----CGGTCGAAT-AA-ATATTTTTAAATTTCATTAA-AACATAA---CCATTGC-----AGATG--TG-TTTATGTCAGC-CAAT-CAGA-TCTTGATTCAA-GATTTAA-A-CGTTTTTCTTCTGCACAACCTGTCAAGTCGG-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGAAGATC----AA
gi|6 : aagaAGTCTTGGT----CATCTGCGACGCTTCCTTTTCTAAATAAGT-AACGTCTTGAACATTGAT--GCTTT--GAAAAC-AA-------------TT------AACTGTACTCTGAT-ATGTTTCTGAATGGTGCA-TTCAAATAATGGATCTAC
gi|7 : tataTTTG-TTTGTTTTGGC--AAC-CAAG-TTTCACCTCCT-GCTTCAT-A-T-TTTT--TTCTACATAAAGTGTCCAGCCAT-----TTGTGTTTTAGAAAAGCATGCCTTGAAGATGAGC----AAAAC
gi|8 : TG-TTTGTATTAGC-TAAC-TGAA-TATTTCT-----GTTTCAATA-TTTTTT--TTCAGCAATAAGTGTCAAGAAAC-----TT------CAGAAAAGCAAGCGTCACTGATGATC----AAGA
gi|9 : TCGGC-CAAT-CAAACTCTTACGTCCG-GATTCAC-A-C-TCTT--CTCTGCGTATCATGTCAAGACGA-----TTGTCATTTAGA--------CGTCGACGATGATC----AAGACTt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGACCATTTGTTGATTGACTGGTTTCTATAAGAAAAACAACAGG
Alignments
lowQualScore : 11111 66666666666666666 8888888888888888888888888888 22222222222222 11 3333333333 111 333333333333 11 111
lowQualScore : 8888 5 1 1 8 99 1 3 55555 88 33333333333333333 1 1 3 8888 6 22 44 1 8 0 9999999999999999999999999999 3 8 33333333333333 1 66 11 0000000000 3 0 5 1 3 8 8 6 0 666 66 777777777777 66 5 1 44 4 2 4 99 4 000 55 2 66 1 77777 1 0 7777
lowQualScore : .... . . . . .. . . ..... .. ................. . . . .... . .. .. . . . ............................ . . .............. . .. .. .......... . . . . . . . . . ... .. ............ .. . . .. . . . .. . ... .. . .. . ..... . . ....
lowQualScore : 5555 7 0 4 0 44 0 2 22222 33 55555555555555555 0 0 0 5555 7 00 66 0 0 6 5555555555555555555555555555 8 0 88888888888888 0 44 00 2222222222 8 8 0 0 2 0 0 0 8 888 22 888888888888 88 0 0 66 4 7 4 00 0 444 00 5 22 4 11111 9 8 7777
consensus : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGC--C--GAGAAT-AAAAATG-------TTT------AACAGNANTCTGATAACGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--TATAT-T--AAAAAA-TA-T-GTTT-GATGTTTATT-TCTATATTCATTATTTTTTTATTATAAGATANTTTCTATTTGACAAA--CATCTT------G---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTAAATTTTATT-A-AACATAACC---G---C---AGAGGTGTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
Reference ( family-4931 ) : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGC--C--GAGAAT-AAAAATG-------TTT------AACAGNANTCTGATAACGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--TATAT-T--AAAAA--TA-T-GTTT-GATGTTTATT-TCTATATTCATTATTTTTTTATTATAAGATANTTTCTATTTGACAAA--CATCTT------G---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTAAATTTTATT-A-AACATAACC---G---C---AGAGGTTTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
gi|1 : AGTCTTGAT----GATATGAGACTCTTGCTTTTCTAAAAAACATACCAT-TTG-ACA-TGTTCGGC--C--GAGTAT-GAAAATC-------TTTTTATTAAGCGAAAATCGAATAACGTTTTTGATTTGTTGA-TTCAAACAGTCAAGCTACCTGGGATA-TTTCCAT--TCTATAT--AAAAAAGTA-TCGTTTGGATGTTTATT-TCTATACTCATTATTTTT--------AGATGTTTTCTA--TGACAAA--GATCTT------A---TACAAGACAACTGCCATGACTTCCGTCCGAAT-AATTTTTTTTTAAATTTTATC-ATAAC--AACC---G---TTGGAGAGG-GTG-TTTGTTTTATC-CACT-CAGA-TCTTACTTCC--GATTCAA-A-CG-ATC--TTCTGCACAACTTCTCAATATAT-----TTATCTATTAGAAAAGCAAGCGTCGCATATGATT----AAGAC
gi|10 : GAA--AAAAAGG-------T--------AACAGGATTCTGATAAATATTCTAATTGGTTGATTTTAAACAACCGCACTGCCAAAGTGA-TTTCCAT--AATGT-T--A
gi|11 : ttcttcttACTTCCT-GTTTCAA-AACGTTTT--TTG-GCACAAAGTGTCAAAACCTTTATATTGTACTTTAGAAAAGCAATCATCAAATATGAT
gi|12 : G-TCTGTGTAAGC-CAATACA-A-TCTT--TGCCATGATT---------TTT--TTCAGCACAGTGTGTCAATACAT-----TTGTATTTTACAAACGTAAGCGaa
gi|13 : AGTCTAGAT----CATATTCGACGCTTGCTTTTCT
gi|14 : tacttccggtgcataccactaatctgtactattttcgataACAAAATGTTCATTCGT-----TTGTTTGATAGACAAGCAAGCATCGCAGATGATCACATAAGACT
gi|15 : ctTTTT--TTCTGCGCAAAGTGTCAAAACGT-----TTTTCTATCATAAAAGCAAGCGTCGAAGtc
gi|16 : attTGTCGAGACGT-----TTGTCTTATAGAAATGCAAGCGTCGAACATGATC----AAGAC
gi|17 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACC
gi|19 : aaTCTTGAT----CATCTCCGACGTTTGCTTTTGT-AAAGGCA-Aa
gi|2 : TCTTGAT----CATCTGTGATGCTTGCTTTTCTACAAGACA-AACAACAGG-ACA-ATTTTTTC--CTTGAAAATTAAACAT-----------------AACAATATTTTGATAAGATTTCCAATTGGTTGA-TTCAGACAATTGGTCTACCTCAGCGATTTTCCATAGTATAT-T--AGAAGACTATT-GTTTAGATGTTTATA-TCTATATTCGTTTTCTCTTT------AGATACTTTCTATTTGACAAA--CATCTT------GGACTGTAATA-AAATATCA-GAATATCGT---AATAAA-ATATTTTTTAATTTATTT-A-AACATAACT---G---TA--AGAGGCGTGTTTTGTCTCAGCAAAAT-CAGA-TCATAGTTCCA-GATTCAA-A-TTTTTT--TCCTACACAAATTGTGAAAACAT-----TTGT-TTATAGAAAAGCAAGTGTGGCAGATGATC----AAgttataa
gi|20 : aT-----TCGTCTTCCAGAAAAGCAAGCGTCGCAGATGATC----GAGACa
gi|21 : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTGAAAGACca
gi|22 : tgTCTTGAT----CATCTGCGACGTTTGCATGTCTAAAAGag
gi|3 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACCTTCTTG-ACA-AGACCGGT--C--GAGAAT-AAAAATAATTTTTATTT------ACCAAAAATCGAATAACGTTTTTGATTGATTGA-TTCAAACAATCGTACTACCATGGAGA-TGTCCAC-----------------------------A-GTTTATT-TCTGAATTCATTATTTTTTTATTATTAGATATTTTCTAT--GACAAAAATATCTT------G---TACAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTATATTTTATT---------------G---C---AGGGGTTTG-TTTGTTTCAGC-CAAT-CAGA-TCTTACTTCCA-AATCCAA-A-CGTTTC--TTCAGCACAACTTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGTTTATGATC----AAGACT
gi|4 : AGTCTTGATGGATCATCTGCGACGATTTCATTTCTAAAAGACA-AATGTCTTA-AAA-TGCTCGAC--C--GGGAAT-AAAAATG-------T--------AACAGTAA----AT--------TGATTAGTTGA-TTCAAACGATCGGACTACCTCGGAAA-TGTCCAT--TATAT-TTCAAAA-------------GAT---TATCGTTTATATTCATT----TTTTATTATAAGATAGTTTCTATTTGACAAA--CATCTTACACATG---TGCAAGATAACTACAATGACTTCTGTCTGATT-AA-ATGTTTTCA----TTA---A-AACATAATT---GTTGC---AGAGGTG-G-CTTTTTTCAGT-CAGT-CAAG-TCTTACTTCCA-GATTCAA-A-TGTTTC--TTCTGTACAAC-----------------TTGTCTTTTAGAAAAGCAAACGTCGCAGATGATC----AAGAC
gi|5 : A--TC-T-GTTA-AACGTTTATT-TCCACATTCATAGTT-----ATTATAAGATAGTTTCTATTTGACAAA--CATCGT------G---TGCCAGATAACTGTAATGA----CGGTCGAAT-AA-ATATTTTTAAATTTCATTAA-AACATAACCATTG---C---AGATG--TG-TTTATGTCAGC-CAAT-CAGA-TCTTGATTCAA-GATTTAA-A-CGTTTTTCTTCTGCACAACCTGTCAAGTCGG-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGAAGATC----AA
gi|6 : aagaccAGTCTTGGT----CATCTGCGACGCTTCCTTTTCTAAATAAGT-AACGTCTTGAACATTGAT--GCTTT--GAAAAC-AA-------------TT------AACTGTACTCTGAT-ATGTTTCTGAATGGTGCA-TTCAAATAATGGATCTAC
gi|7 : tataTTTG-TTTGTTTTGGC--AAC-CAAG-TTTCACCTCCT-GCTTCAT-A-T-TTTT--TTCTACATAAAGTGTCCAGCCAT-----TTGTGTTTTAGAAAAGCATGCCTTGAAGATGAGC----AAAAC
gi|8 : TG-TTTGTATTAGC-TAAC-TGAA-TATTTCT-----GTTTCAATA-TTTTTT--TTCAGCAATAAGTGTCAAGAAAC-----TT------CAGAAAAGCAAGCGTCACTGATGATC----AAGA
gi|9 : TCGGC-CAAT-CAAACTCTTACGTCCG-GATTCAC-A-C-TCTT--CTCTGCGTATCATGTCAAGACGA-----TTGTCATTTAGA--------CGTCGACGATGATC----AAGACTt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGACCATTTGTTGATTGACTGGTTTCTATAAGAAAAACAACAGG
Alignments
lowQualScore : 11111 66666666666666666 77777777777777777777777777777 22222222222222 11 11 3333333333 111 333333333333 111
lowQualScore : 8888 5 1 1 8 99 1 3 55555 88 33333333333333333 1 1 3 8888 6 22 44 1 8 0 33333333333333333333333333333 3 8 33333333333333 1 11 11 0000000000 3 0 5 1 3 8 8 6 0 666 66 777777777777 3 5 1 44 4 2 4 99 4 000 55 2 66 1 77777 1 0 7777
lowQualScore : .... . . . . .. . . ..... .. ................. . . . .... . .. .. . . . ............................. . . .............. . .. .. .......... . . . . . . . . . ... .. ............ . . . .. . . . .. . ... .. . .. . ..... . . ....
lowQualScore : 5555 7 0 4 0 44 0 2 22222 33 55555555555555555 0 0 0 5555 7 00 66 0 0 6 33333333333333333333333333333 8 0 88888888888888 0 22 00 2222222222 8 8 0 0 2 0 0 0 8 888 22 888888888888 8 0 0 66 4 7 4 00 0 444 00 5 22 4 11111 9 8 7777
consensus : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGC--C--GAGAAT-AAAAATG-------TTT------AACAGNANTCTGATAACGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--T--ATATTANAAAA-TA-T-GTTT-G-ATGTTTATT-TCTATATTCATTATTTTTTTATTATAAGATANTTTCTATTTGACAAA--CATCTT------G---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTAAATTTTATT-A-AACATAACC---G---C---AGAGGTGTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
Reference ( family-4931 ) : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGC--C--GAGAAT-AAAAATG-------TTT------AACAGNANTCTGATAACGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--T--ATATTAAAAAA-TA-T-GTTT-G-ATGTTTATT-TCTATATTCATTATTTTTTTATTATAAGATANTTTCTATTTGACAAA--CATCTT------G---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTAAATTTTATT-A-AACATAACC---G---C---AGAGGTGTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
gi|1 : AGTCTTGAT----GATATGAGACTCTTGCTTTTCTAAAAAACATACCAT-TTG-ACA-TGTTCGGC--C--GAGTAT-GAAAATC-------TTTTTATTAAGCGAAAATCGAATAACGTTTTTGATTTGTTGA-TTCAAACAGTCAAGCTACCTGGGATA-TTTCCAT--TCTATATAAAAAAG-TA-TCGTTT-GGATGTTTATT-TCTATACTCATTATTTTT--------AGATGTTTTCTAT--GACAAA--GATCTT------A---TACAAGACAACTGCCATGACTTCCGTCCGAAT-AATTTTTTTTTAAATTTTATC-ATAAC--AACC---G---TTGGAGAGG-GTG-TTTGTTTTATC-CACT-CAGA-TCTTACTTCC--GATTCAA-A-CG-ATC--TTCTGCACAACTTCTCAATATAT-----TTATCTATTAGAAAAGCAAGCGTCGCATATGATT----AAGAC
gi|10 : GAA--AAAAAGG-------T--------AACAGGATTCTGATAAATATTCTAATTGGTTGATTTTAAACAACCGCACTGCCAAAGTGA-TTTCCAT--A--ATGTTA
gi|11 : ttcttcttACTTCCT-GTTTCAA-AACGTTTT--TTG-GCACAAAGTGTCAAAACCTTTATATTGTACTTTAGAAAAGCAATCATCAAATATGAT
gi|12 : G-TCTGTGTAAGC-CAATACA-A-TCTT--TGCCATGATT---------TTT--TTCAGCACAGTGTGTCAATACAT-----TTGTATTTTACAAACGTAAGCGaa
gi|13 : AGTCTAGAT----CATATTCGACGCTTGCTTTTCT
gi|14 : tacttccggtgcataccactaatctgtactattttcgataACAAAATGTTCATTCGT-----TTGTTTGATAGACAAGCAAGCATCGCAGATGATCACATAAGACT
gi|15 : ctTTTT--TTCTGCGCAAAGTGTCAAAACGT-----TTTTCTATCATAAAAGCAAGCGTCGAAGtc
gi|16 : attTGTCGAGACGT-----TTGTCTTATAGAAATGCAAGCGTCGAACATGATC----AAGAC
gi|17 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACC
gi|19 : aaTCTTGAT----CATCTCCGACGTTTGCTTTTGT-AAAGGCA-Aa
gi|2 : TCTTGAT----CATCTGTGATGCTTGCTTTTCTACAAGACA-AACAACAGG-ACA-ATTTTTTC--CTTGAAAATTAAACAT-----------------AACAATATTTTGATAAGATTTCCAATTGGTTGA-TTCAGACAATTGGTCTACCTCAGCGATTTTCCATAGT--ATATTAGAAGACTATT-GTTTAG-ATGTTTATA-TCTATATTCGTTTTCTCTTT------AGATACTTTCTATTTGACAAA--CATCTT------GGACTGTAATA-AAATATCA-GAATATCGT---AATAAA-ATATTTTTTAATTTATTT-A-AACATAACT---G---TA--AGAGGCGTGTTTTGTCTCAGCAAAAT-CAGA-TCATAGTTCCA-GATTCAA-A-TTTTTT--TCCTACACAAATTGTGAAAACAT-----TTGT-TTATAGAAAAGCAAGTGTGGCAGATGATC----AAgttataa
gi|20 : aT-----TCGTCTTCCAGAAAAGCAAGCGTCGCAGATGATC----GAGACa
gi|21 : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTGAAAGACca
gi|22 : tgTCTTGAT----CATCTGCGACGTTTGCATGTCTAAAAGag
gi|3 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACCTTCTTG-ACA-AGACCGGT--C--GAGAAT-AAAAATAATTTTTATTT------ACCAAAAATCGAATAACGTTTTTGATTGATTGA-TTCAAACAATCGTACTACCATGGAGA-TGTCCAC-----------------------------A-GTTTATT-TCTGAATTCATTATTTTTTTATTATTAGATATTTTCTAT--GACAAAAATATCTT------G---TACAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTATATTTTATT---------------G---C---AGGGGTTTG-TTTGTTTCAGC-CAAT-CAGA-TCTTACTTCCA-AATCCAA-A-CGTTTC--TTCAGCACAACTTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGTTTATGATC----AAGACT
gi|4 : AGTCTTGATGGATCATCTGCGACGATTTCATTTCTAAAAGACA-AATGTCTTA-AAA-TGCTCGAC--C--GGGAAT-AAAAATG-------T--------AACAGTAA----AT--------TGATTAGTTGA-TTCAAACGATCGGACTACCTCGGAAA-TGTCCAT--T--ATATTTCAAAA-----------G-AT---TATCGTTTATATTCATT----TTTTATTATAAGATAGTTTCTATTTGACAAA--CATCTTACACATG---TGCAAGATAACTACAATGACTTCTGTCTGATT-AA-ATGTTTTCA----TTA---A-AACATAATT---GTTGC---AGAGGTG-G-CTTTTTTCAGT-CAGT-CAAG-TCTTACTTCCA-GATTCAA-A-TGTTTC--TTCTGTACAAC-----------------TTGTCTTTTAGAAAAGCAAACGTCGCAGATGATC----AAGAC
gi|5 : A-TC-T-GTTA-A-ACGTTTATT-TCCACATTCATAGTT-----ATTATAAGATAGTTTCTATTTGACAAA--CATCGT------G---TGCCAGATAACTGTAATGA----CGGTCGAAT-AA-ATATTTTTAAATTTCATTAA-AACATAACCATTG---C---AGA--TGTG-TTTATGTCAGC-CAAT-CAGA-TCTTGATTCAA-GATTTAA-A-CGTTTTTCTTCTGCACAACCTGTCAAGTCGG-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGAAGATC----AA
gi|6 : aagaccAGTCTTGGT----CATCTGCGACGCTTCCTTTTCTAAATAAGT-AACGTCTTGAACATTGAT--GCTTT--GAAAAC-AA-------------TT------AACTGTACTCTGAT-ATGTTTCTGAATGGTGCA-TTCAAATAATGGATCTAC
gi|7 : tataTG-TTTGTTTTGGC--AAC-CAAG-TTTCACCTCCT-GCTTCAT-A-T-TTTT--TTCTACATAAAGTGTCCAGCCAT-----TTGTGTTTTAGAAAAGCATGCCTTGAAGATGAGC----AAAAC
gi|8 : ttTG-TTTGTATTAGC-TAAC-TGAA-TATTTCT-----GTTTCAATA-TTTTTT--TTCAGCAATAAGTGTCAAGAAAC-----TT------CAGAAAAGCAAGCGTCACTGATGATC----AAGA
gi|9 : TCGGC-CAAT-CAAACTCTTACGTCCG-GATTCAC-A-C-TCTT--CTCTGCGTATCATGTCAAGACGA-----TTGTCATTTAGA--------CGTCGACGATGATC----AAGACTt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGACCATTTGTTGATTGACTGGTTTCTATAAGAAAAACAACAGG
Alignments
lowQualScore : 11111 66666666666666666 666666666666666666666666666666 22222222222222 11 11 3333333333 111 333333333333 111
lowQualScore : 8888 5 1 1 8 99 1 3 55555 88 33333333333333333 1 1 3 8888 6 22 44 1 8 0 333333333333333333333333333333 8 33333333333333 1 11 11 0000000000 3 0 5 1 3 8 8 6 0 666 66 777777777777 3 5 1 44 4 2 4 99 4 000 55 2 66 1 77777 1 0 7777
lowQualScore : .... . . . . .. . . ..... .. ................. . . . .... . .. .. . . . .............................. . .............. . .. .. .......... . . . . . . . . . ... .. ............ . . . .. . . . .. . ... .. . .. . ..... . . ....
lowQualScore : 5555 7 0 4 0 44 0 2 22222 33 55555555555555555 0 0 0 5555 7 00 66 0 0 6 666666666666666666666666666666 0 88888888888888 0 22 00 2222222222 8 8 0 0 2 0 0 0 8 888 22 888888888888 8 0 0 66 4 7 4 00 0 444 00 5 22 4 11111 9 8 7777
consensus : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGC--C--GAGAAT-AAAAATG-------TTT------AACAGNANTCTGATAACGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--T--ATATTANAAAA-TA-T-GTTT-G-ATGTTTATT-TCTATATTCATTATTTTTTTATTATAAGATANTTTCTATTTGACAAA--CATCTT------G---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTAAATTTTATT-A-AACATAACC---G---C---AGAGGTGTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
Reference ( family-4931 ) : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGC--C--GAGAAT-AAAAATG-------TTT------AACAGNANTCTGATAACGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--T--ATATTANAAAA-TA-T-GTTT-G-ATGTTTATT-TCTATATTCATTATTTTTTTATTATAAGATANTTTCTATTTGACAAA--CATCTT------G---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTAAATTTTATT-A-AACATAACC---G---C---AGAGGTGTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
gi|1 : AGTCTTGAT----GATATGAGACTCTTGCTTTTCTAAAAAACATACCAT-TTG-ACA-TGTTCGGC--C--GAGTAT-GAAAATC-------TTTTTATTAAGCGAAAATCGAATAACGTTTTTGATTTGTTGA-TTCAAACAGTCAAGCTACCTGGGATA-TTTCCAT--TCTATATAAAAAAG-TA-TCGTTT-GGATGTTTATT-TCTATACTCATTATTTTT--------AGATGTTTTCTAT--GACAAA--GATCTT------A---TACAAGACAACTGCCATGACTTCCGTCCGAAT-AATTTTTTTTTAAATTTTATC-ATAAC--AACC---G---TTGGAGAGG-GTG-TTTGTTTTATC-CACT-CAGA-TCTTACTTCC--GATTCAA-A-CG-ATC--TTCTGCACAACTTCTCAATATAT-----TTATCTATTAGAAAAGCAAGCGTCGCATATGATT----AAGAC
gi|10 : GAA--AAAAAGG-------T--------AACAGGATTCTGATAAATATTCTAATTGGTTGATTTTAAACAACCGCACTGCCAAAGTGA-TTTCCAT--A--ATGTTA
gi|11 : ttcttcttACTTCCT-GTTTCAA-AACGTTTT--TTG-GCACAAAGTGTCAAAACCTTTATATTGTACTTTAGAAAAGCAATCATCAAATATGAT
gi|12 : G-TCTGTGTAAGC-CAATACA-A-TCTT--TGCCATGATT---------TTT--TTCAGCACAGTGTGTCAATACAT-----TTGTATTTTACAAACGTAAGCGaa
gi|13 : AGTCTAGAT----CATATTCGACGCTTGCTTTTCT
gi|14 : tacttccggtgcataccactaatctgtactattttcgataACAAAATGTTCATTCGT-----TTGTTTGATAGACAAGCAAGCATCGCAGATGATCACATAAGACT
gi|15 : ctTTTT--TTCTGCGCAAAGTGTCAAAACGT-----TTTTCTATCATAAAAGCAAGCGTCGAAGtc
gi|16 : attTGTCGAGACGT-----TTGTCTTATAGAAATGCAAGCGTCGAACATGATC----AAGAC
gi|17 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACC
gi|19 : aaTCTTGAT----CATCTCCGACGTTTGCTTTTGT-AAAGGCA-Aa
gi|2 : TCTTGAT----CATCTGTGATGCTTGCTTTTCTACAAGACA-AACAACAGG-ACA-ATTTTTTC--CTTGAAAATTAAACAT-----------------AACAATATTTTGATAAGATTTCCAATTGGTTGA-TTCAGACAATTGGTCTACCTCAGCGATTTTCCATAGT--ATATTAGAAGACTATT-GTTTAG-ATGTTTATA-TCTATATTCGTTTTCTCTTT------AGATACTTTCTATTTGACAAA--CATCTT------GGACTGTAATA-AAATATCA-GAATATCGT---AATAAA-ATATTTTTTAATTTATTT-A-AACATAACT---G---TA--AGAGGCGTGTTTTGTCTCAGCAAAAT-CAGA-TCATAGTTCCA-GATTCAA-A-TTTTTT--TCCTACACAAATTGTGAAAACAT-----TTGT-TTATAGAAAAGCAAGTGTGGCAGATGATC----AAgttataa
gi|20 : aT-----TCGTCTTCCAGAAAAGCAAGCGTCGCAGATGATC----GAGACa
gi|21 : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTGAAAGACca
gi|22 : tgTCTTGAT----CATCTGCGACGTTTGCATGTCTAAAAGag
gi|3 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACCTTCTTG-ACA-AGACCGGT--C--GAGAAT-AAAAATAATTTTTATTT------ACCAAAAATCGAATAACGTTTTTGATTGATTGA-TTCAAACAATCGTACTACCATGGAGA-TGTCCA------------CA------------------GTTTATT-TCTGAATTCATTATTTTTTTATTATTAGATATTTTCTAT--GACAAAAATATCTT------G---TACAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTATATTTTATT---------------G---C---AGGGGTTTG-TTTGTTTCAGC-CAAT-CAGA-TCTTACTTCCA-AATCCAA-A-CGTTTC--TTCAGCACAACTTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGTTTATGATC----AAGACT
gi|4 : AGTCTTGATGGATCATCTGCGACGATTTCATTTCTAAAAGACA-AATGTCTTA-AAA-TGCTCGAC--C--GGGAAT-AAAAATG-------T--------AACAGTAA----AT--------TGATTAGTTGA-TTCAAACGATCGGACTACCTCGGAAA-TGTCCAT--T--ATATTTCAAAA-----------G-AT---TATCGTTTATATTCATT----TTTTATTATAAGATAGTTTCTATTTGACAAA--CATCTTACACATG---TGCAAGATAACTACAATGACTTCTGTCTGATT-AA-ATGTTTTCA----TTA---A-AACATAATT---GTTGC---AGAGGTG-G-CTTTTTTCAGT-CAGT-CAAG-TCTTACTTCCA-GATTCAA-A-TGTTTC--TTCTGTACAAC-----------------TTGTCTTTTAGAAAAGCAAACGTCGCAGATGATC----AAGAC
gi|5 : A-TC-T-GTTA-A-ACGTTTATT-TCCACATTCATAGTT-----ATTATAAGATAGTTTCTATTTGACAAA--CATCGT------G---TGCCAGATAACTGTAATGA----CGGTCGAAT-AA-ATATTTTTAAATTTCATTAA-AACATAACCATTG---C---AGA--TGTG-TTTATGTCAGC-CAAT-CAGA-TCTTGATTCAA-GATTTAA-A-CGTTTTTCTTCTGCACAACCTGTCAAGTCGG-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGAAGATC----AA
gi|6 : aagaccAGTCTTGGT----CATCTGCGACGCTTCCTTTTCTAAATAAGT-AACGTCTTGAACATTGAT--GCTTT--GAAAAC-AA-------------TT------AACTGTACTCTGAT-ATGTTTCTGAATGGTGCA-TTCAAATAATGGATCTAC
gi|7 : tataTG-TTTGTTTTGGC--AAC-CAAG-TTTCACCTCCT-GCTTCAT-A-T-TTTT--TTCTACATAAAGTGTCCAGCCAT-----TTGTGTTTTAGAAAAGCATGCCTTGAAGATGAGC----AAAAC
gi|8 : ttTG-TTTGTATTAGC-TAAC-TGAA-TATTTCT-----GTTTCAATA-TTTTTT--TTCAGCAATAAGTGTCAAGAAAC-----TT------CAGAAAAGCAAGCGTCACTGATGATC----AAGA
gi|9 : TCGGC-CAAT-CAAACTCTTACGTCCG-GATTCAC-A-C-TCTT--CTCTGCGTATCATGTCAAGACGA-----TTGTCATTTAGA--------CGTCGACGATGATC----AAGACTt
blockSeqs : GGAT . C A A TT T T CTT TT AATTTTTATTT G T T AAAT T CA AA T T TAGTATATTAGAAGACTATTGTTTAG G ATTTTTTTATTATT C TT AA ACACATG T A A C A . A AA AT TGTTGC C T G AA A G C AT T ACG TC A AG A TTATA A ACAT
blockSeqs : . . A T . A A C TTT T GT T T T AAGA . GT TC C . TTATATTTCAAAAG . TTTTATTATA T TT . GGAC T C T C . . T A AT CATTGC T . C C . G . T . TT . T TG T . A .
blockSeqs : . . C G . A C C C T GT A A G AACG . TA AT A . CA . GTTATTATA G TT . G T C T T . . A A AT TGTA T . T C . A . A . CG . T AA T . T .
blockSeqs : . . A G . T A . C C TT T A T ATG . GA TC A . . TTCTCTTT G . . G . . . . . . . . . GC T . T C . G . A . TG . A AG A . C .
blockSeqs : . . A . . T C . . . AT . G C . A . A . CG . T AT G . C .
blockSeqs : . . . T T . A . A . TT . T CT A . C .
blockSeqs : . . A C . A . T . T . T CC G . C .
blockSeqs : . . . . . G . C . A AG G . C .
blockSeqs : . . . . . T AG G . C .
blockSeqs : . . CA G . G .
blockSeqs : C G . C
blockSeqs : . . .
blockSeqs : . .
blockSeqCons : C**** GT*************** TTTTATTAT***** TT A** AT A*
originalCons : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGC--C--GAGAAT-AAAAATG-------TTT------AACAGNANTCTGATAACGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--T--ATATTANAAAA-TA-T-GTTT-G-ATGTTTATT-TCTATATTCATTATTTTTTTATTATAAGATANTTTCTATTTGACAAA--CATCTT------G---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTAAATTTTATT-A-AACATAACC---G---C---AGAGGTGTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
finalCons : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGCC----GAGAAT-AAAAATGT---------------AACAGNANTCTGATAACGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--T--ATATTANAAAA-TA-T-GTTT-G-ATGTTTATT-TCTATATTCATTTTTTATTAT-----AGATANTTTCTATTTGACAAA--CATCTT------G---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AA-ATATTTTTAAATTTTATTA--AACATAACC---G---C---AGAGGTGTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGACCATTTGTTGATTGACTGGTTTCTATAAGAAAAACAACAGG
Alignments
lowQualScore : 11 4444444444444444444 66666666666666666666666666666666 2222 1 11 11 222222 111 111 33333333333333333333333 111
lowQualScore : 8888 5 1 1 8 99 1 3 11 7 9999999999999999999 1 1 3 8888 6 22 44 1 8 0 88888888888888888888888888888888 8 5555 66 5 6 8 1 11 11 333333 444 3 0 5 1 3 8 000 0 77777777777777777777777 3 5 1 44 4 2 4 99 4 000 55 2 66 1 77777 1 0 7777
lowQualScore : .... . . . . .. . . .. . ................... . . . .... . .. .. . . . ................................ . .... .. . . . . .. .. ...... ... . . . . . . ... . ....................... . . . .. . . . .. . ... .. . .. . ..... . . ....
lowQualScore : 5555 7 0 4 0 44 0 2 00 3 7777777777777777777 0 0 0 5555 7 00 66 0 0 6 00000000000000000000000000000000 0 0000 44 6 0 0 0 22 00 000000 000 8 8 0 0 2 0 222 8 22222222222222222222222 8 0 0 66 4 7 4 00 0 444 00 5 22 4 11111 9 8 7777
consensus : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGCC--GAGAATAAAAATG---------T--------AACAGNANTCTGATAACGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--T--ATATTANAAAA-TA-T-GTTT-G-ACGTTTATT-TCTATATTCATTA---TTTTATTAT-A-GATANTTTCTATTTGACAAA--CATCT------TG---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AAATATTTTT-AAATTTTATT-A-AACATAA---CC---GC---AGAGGTGTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
Reference ( family-4931 ) : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTAAAAGACA-ANCGTCTTG-ACA-TGNTCGGCC--GAGAATAAAAATG---------T--------AACAGNANTCTGATAACGTTTCTGATTGGTTGA-TTCAAACAATCGNNCTACCTCGGAGA-TTTCCAT--T--ATATTANAAAA-TA-T-GTTT-G-ATGTTTATT-TCTATATTCATT----TTTTATTAT-A-GATANTTTCTATTTGACAAA--CATCT------TG---TGCAAGATAACTGCCATGACTTCCGTCCGAAT-AAATATTTTT-AAATTTTATT-A-AACATAA---CC---GC---AGAGGTGTG-TTTGTNTCAGC-CAAT-CAGA-TCTTACTTCCA-GATTCAA-A-CGTTTT--TTCTGCACAANGTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGATGATC----AAGACT
gi|1 : AGTCTTGAT----GATATGAGACTCTTGCTTTTCTAAAAAACATACCAT-TTG-ACA-TGTTCGGCC--GAGTATGAAAATC---------TTTTTATTAAGCGAAAATCGAATAACGTTTTTGATTTGTTGA-TTCAAACAGTCAAGCTACCTGGGATA-TTTCCAT--TCTATATAAAAAAG-TA-TCGTTT-GGATGTTTATT-TCTATACTCATTA---TTTT----T-A-GATGTTTTCTAT--GACAAA--GATCT------TA---TACAAGACAACTGCCATGACTTCCGTCCGAAT-AATTTTTTTTTAAATTTTATC-ATAAC--AA---CC---GTTGGAGAGG-GTG-TTTGTTTTATC-CACT-CAGA-TCTTACTTCC--GATTCAA-A-CG-ATC--TTCTGCACAACTTCTCAATATAT-----TTATCTATTAGAAAAGCAAGCGTCGCATATGATT----AAGAC
gi|10 : GAA-AAAAAGG---------T--------AACAGGATTCTGATAAATATTCTAATTGGTTGATTTTAAACAACCGCACTGCCAAAGTGA-TTTCCAT--A--ATGTTA
gi|11 : ttcttcttACTTCCT-GTTTCAA-AACGTTTT--TTG-GCACAAAGTGTCAAAACCTTTATATTGTACTTTAGAAAAGCAATCATCAAATATGAT
gi|12 : G-TCTGTGTAAGC-CAATACA-A-TCTT--TGCCATGATT---------TTT--TTCAGCACAGTGTGTCAATACAT-----TTGTATTTTACAAACGTAAGCGaa
gi|13 : AGTCTAGAT----CATATTCGACGCTTGCTTTTCT
gi|14 : tacttccggtgcataccactaatctgtactattttcgataACAAAATGTTCATTCGT-----TTGTTTGATAGACAAGCAAGCATCGCAGATGATCACATAAGACT
gi|15 : ctTTTT--TTCTGCGCAAAGTGTCAAAACGT-----TTTTCTATCATAAAAGCAAGCGTCGAAGtc
gi|16 : attTGTCGAGACGT-----TTGTCTTATAGAAATGCAAGCGTCGAACATGATC----AAGAC
gi|17 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACC
gi|19 : aaTCTTGAT----CATCTCCGACGTTTGCTTTTGT-AAAGGCA-Aa
gi|2 : TCTTGAT----CATCTGTGATGCTTGCTTTTCTACAAGACA-AACAACAGG-ACA-ATTTTTTCCTTGAAAATTAAA-CA---------T--------AACAATATTTTGATAAGATTTCCAATTGGTTGA-TTCAGACAATTGGTCTACCTCAGCGATTTTCCATAGT--ATATTAGAAGACTATT-GTTTAG-ATGTTTATA-TCTATATTCGTT----TTCTCTT-T-A-GATACTTTCTATTTGACAAA--CATCT------TGGACTGTAATA-AAATATCA-GAATATCGT---AATAAAATATTTTT-TAATTTATTT-A-AACATAA---CT---GTA--AGAGGCGTGTTTTGTCTCAGCAAAAT-CAGA-TCATAGTTCCA-GATTCAA-A-TTTTTT--TCCTACACAAATTGTGAAAACAT-----TTGT-TTATAGAAAAGCAAGTGTGGCAGATGATC----AAgttataa
gi|20 : aT-----TCGTCTTCCAGAAAAGCAAGCGTCGCAGATGATC----GAGACa
gi|21 : AGTCTTGAT----CATCTGCGACGCTTGCTTTTCTGAAAGACca
gi|22 : tgTCTTGAT----CATCTGCGACGTTTGCATGTCTAAAAGag
gi|3 : AGTCTTGAT----CATATGCGATGCTTGCTTTTCTAACAGACA-ACCTTCTTG-ACA-AGACCGGTC--GAGAATAAAAATAATTTTTATTT--------ACCAAAAATCGAATAACGTTTTTGATTGATTGA-TTCAAACAATCGTACTACCATGGAGA-TGTCCA------------CA------------------GTTTATT-TCTGAATTCATTATTTTTTTATTATTA-GATATTTTCTAT--GACAAAAATATCT------TG---TACAAGATAACTGCCATGACTTCCGTCCGAAT-AAATATTTTT-ATATTTTATT------------------GC---AGGGGTTTG-TTTGTTTCAGC-CAAT-CAGA-TCTTACTTCCA-AATCCAA-A-CGTTTC--TTCAGCACAACTTGTCAAGACGT-----TTGTCTTTTAGAAAAGCAAGCGTCGTTTATGATC----AAGACT
gi|4 : AGTCTTGATGGATCATCTGCGACGATTTCATTTCTAAAAGACA-AATGTCTTA-AAA-TGCTCGACC--GGGAATAAAAATG---------T--------AACAGTAA----AT--------TGATTAGTTGA-TTCAAACGATCGGACTACCTCGGAAA-TGTCCAT--T--ATATTTCAAAA-----------G-A---TTATCGTTTATATTCATT----TTTTATTATAA-GATAGTTTCTATTTGACAAA--CATCTTACACATG---TGCAAGATAACTACAATGACTTCTGTCTGATT-AAATGTTTTC-A----TTA---A-AACATAATTGTT---GC---AGAGGTG-G-CTTTTTTCAGT-CAGT-CAAG-TCTTACTTCCA-GATTCAA-A-TGTTTC--TTCTGTACAAC-----------------TTGTCTTTTAGAAAAGCAAACGTCGCAGATGATC----AAGAC
gi|5 : A-TC-T-GTTA-A-ACGTTTATT-TCCACATTCATA----GTT-ATTAT-AAGATAGTTTCTATTTGACAAA--CATCG------TG---TGCCAGATAACTGTAATGA----CGGTCGAAT-AAATATTTTT-AAATTTCATTAA-AACATAA---CCATTGC---AGA--TGTG-TTTATGTCAGC-CAAT-CAGA-TCTTGATTCAA-GATTTAA-A-CGTTTTTCTTCTGCACAACCTGTCAAGTCGG-----TTGTCTTTTAGAAAAGCAAGCGTCGCAGAAGATC----AA
gi|6 : aagaccAGTCTTGGT----CATCTGCGACGCTTCCTTTTCTAAATAAGT-AACGTCTTGAACATTGAT--GCT--TTGAA-AACAAT----------T--------AACTGTACTCTGAT-ATGTTTCTGAATGGTGCA-TTCAAATAATGGATCTAC
gi|7 : tataTG-TTTGTTTTGGC--AAC-CAAG-TTTCACCTCCT-GCTTCAT-A-T-TTTT--TTCTACATAAAGTGTCCAGCCAT-----TTGTGTTTTAGAAAAGCATGCCTTGAAGATGAGC----AAAAC
gi|8 : ttTG-TTTGTATTAGC-TAAC-TGAA-TATTTCT-----GTTTCAATA-TTTTTT--TTCAGCAATAAGTGTCAAGAAAC-----TT------CAGAAAAGCAAGCGTCACTGATGATC----AAGA
gi|9 : TCGGC-CAAT-CAAACTCTTACGTCCG-GATTCAC-A-C-TCTT--CTCTGCGTATCATGTCAAGACGA-----TTGTCATTTAGA--------CGTCGACGATGATC----AAGACTt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TGACCATTTGTTGATTGACTGGTTTCTATAAGAAAAACAACAGG