lowQualScore : 666666666666666666666 1 1 1111111 888888888888888888888888888888888888888888888888888888888888888888 11 1 1 1 11 11 1111111 222222222 1 1 1 22 11 1 1 1 11 222222 1 1 1 111 111 11 1111 22
lowQualScore : 000000000000000000000 5 2 1111111 6 111111111111111111111111111111111111111111111111111111111111111111 11 6 6 5 6 6 444 444 666666 77777 2 2 2 8 7 22 6666 00 5555555 2 33 77777777 888888888 888 1 1 33 33 6 5 555 1 6 33 33 0 2 2 11 0 2 11 8 2 0 6 1 0 44 9999 111111 55 1 7 3 5 5 1 8888 2 4 6 000 888 88 3 1111 77
lowQualScore : ..................... . . ....... . .................................................................. .. . . . . . ... ... ...... ..... . . . . . .. .... .. ....... . .. ........ ......... ... . . .. .. . . ... . . .. .. . . . .. . . .. . . . . . . .. .... ...... .. . . . . . . .... . . . ... ... .. . .... ..
lowQualScore : 999999999999999999999 0 3 8888888 5 555555555555555555555555555555555555555555555555555555555555555555 77 2 2 0 7 0 777 777 444444 11111 9 0 9 2 6 55 1111 66 2222222 9 99 33333333 888888888 999 4 4 99 99 1 7 000 2 9 99 99 7 9 9 33 8 9 88 8 7 5 8 2 0 33 5555 444444 00 9 0 7 2 0 6 5555 5 0 0 111 555 88 3 8888 11
consensus : TTCGTTTGATGCGGAAACGTAAGT--AAGTGAAA--TGGANTTTAACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAATGNNNNCGCAGTTGANNGAGTGNTNACCGCTTACTCCAAANNTTGCGGGTTTNGTCG-TCTTAATGGCCATACAGATT-ACCAGTCCTCGTCTGTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCT-----CTGAAACT-TATAT-GTATTATTTTAA--TT----GC-TGTTTC--GAAA-AAA--A--CNT---AAN---A--GTGCATTTCCAT--CATATTT--CT--TTTAAATATTGAATTTAACTTTGAT---ACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGCG-A-AAGGNTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGCAAATGAAACANTTTTAC-AAACAATAGTAA--TATTATTTAAAGGGG--CTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAATCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTTTGC--TCC-GAACTTC-AGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
Reference ( gi|2 ) : TTCGTTTGATGCGGAAACGTAAGT-GAAGTGAAA--GGAAATTGAACATTGGTGTTAGTCTCTTA---AAGGGCACAACACGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA-TCTTAATGGTTATACAGATT-ACCAGTCCTCGTCTGTT-CATTGATCATCTAGAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCT-----CTGAAACT-TATAT-GTATTAATTTTA--TT----GT-TGTTTC--AATA-AAA--A--CAT---AAT---A--TTGCATTTCCAT--TAGATTT--CT--TTTAAATATTGAATTTAACGTTAAT---ACAACTAAATGTTTTGGAAAG--GA--ATTAATCTGCG-A-AAGGTAGATTTGACCAAAA-CCATTTGGAAGTGTATTTAATCGGAAGTAGTTACAGCTGACCACCTGACTGCCCACTTGTGTATTTCTGCAAATGAAACATTTTTAA-AAACAATAGTAA--TGTTATTTAAAATGG--CTGGGTGGAAGGATGCTCCATCGTACTTTCAATGCCGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCCAGCTC-ATTTTATGAATATGTAACAGTTTGT--TCC-ACACTTA-AGAAAAGCCAGA-CC-TATTGTTAAAATAATTGACAACCATGA
gi|1 : TTCGTTTGATGCGGAAACGTAAGTTGAATTGAA--------TTTAACATTGGTGTGAGTTTCTTA---AAGAGCACAGTACGTTTTTAGATGGATGGTAACGCAGTTGAAAGAGTGGTCACCGCTTACTCCAAAGATTACGGGTTTTATCA-TCATGATGACCATACAGATTTACCAGTCCGCGTCTGTT-CATTCAACATCAAAAGAGTCAATGAGCCTTACAAC-TACC---TATGAATTCAA---TGT-------------AACT-TATAT-GTATTATTTTAA--TT----GC-TGTATC--GAAA-AAA--A--CTT---AA----A--GTGCATTTCCAT--CATATTG--CT--TTTAAATATTGAACTTAACTTTTTT---ACACATTAATGTTTTGGAATG--AA--ATGAATCTGCG-A-AAGGGTGGTTTGACCAAAA-CAGGTTGAAAGTGTATTTAATCGGAAGTAGTAACAGCTGACAACAGGACTGCATACTTGTGTGTATCTACAAATGAAACATTTTTAC-AAACATAAGTAA--TATCATCTAATTGGG--CTGGGAGGAGGGGTGCTCCGCCGTACGCTAAATGACGATATACATGGATCGTAAC----TTTTCACTGTTTATCATAGTGGGTATTGCTTCAAGATC-ATTTTATGAATGTGTTACAGTTTGC--TCC-GAACTTATAAAAAAGCCAGATCT-TGTTCTTCTTATAACAGACAACCA
gi|7 : ttaatatattcatataataatacatttatagtggaatgaTTTGTTTGATGCGGAAACGTA------AGTAGAA--TGGATTTCAACNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG--------TCTTAATTGCCATACAGATT-ACCAGTCCTCGCCTCTTTCATTCATCATCAAAAGAGTCAATGAGACCTAAAACATAAC---AT---ATT------TGTGTCT-----CTGAAATG-TATAT-GTATTATCTTAA--TT----GT-TGTT----AAGAGAAA--A--CGT---AAA---A--T-GCGTTTCCAT--CATATTT--CT--TTTAAATATTGAATTTAACTTTGAT---ACAAGTTAATGATTTGGAAA---------TAAACCGC--------TAGA--------------------AAGTGTATCTAATCGGAAGAAGTAACAGCTGACCACGTGACTGACCACTTTTGCGTTTCTGC------------------AAACAATAGTAA--TATTATTAAAAA-------GGATTGAGGGGTGCT-----G-------AATGACGATATACCTTGATCGAAGC----TTTTTACTGTTAACTATAGTGGGTATTATTTCAAGCTA-ATTTTATGAATGTATAATACTTTGC--TCC-GAACTTC-AGAAAAGCTAGG-CC-TCTGGTTCTGATAATTGACAACCATc
gi|11 : gtataaatatcttgatatagtaatacattcataatgcgctgaTTCGTTTAATGCGGAAACATACGT---AG---AA--TGGATTTTAACATTGGTGTGAGTC----------------AACACGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG-TCTTAATAGCCATACAGATT-ACCAGTCCTCGTCTGTT-CATTCATCATCAAACGAGTCCATTAGCATTACAATATAAC---TC---AGG--A---TGTGTCT-----CTGAAACT-TAAAT-GTATTA-TTTTAAATT----GT-TGTTTCG-AAAA-AAA--A--CTT---AA----A--ATGTATTTCCAT--CATATTT--CT--TTCAAATATTAAATTTAATTTTGAT---ATAACTTAATGTTTCGGAAAA--GA--ATTAATCTGCG-A-AAGGGTGATTTGATCAAAA-CCGCTTGGAAGTGTA-TTAATCGGAAGTAGTAACAGCa
gi|12 : tagtatttcaagtagtaaaacattcaaaatgcaacgaTTCGTTTGATGCGGAAACGTAAGT-TAAATGGAA-------TTTAACATTGGTGCAAGTCTCTTA---AAGAG--------ATTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG-TTTTAATGACCATATAAATT-ACCCGTCCGCGTCTATT-CATTCATCATCAAAAGAGTCAATGAACCTTACAGCATAAC---TG---ATT--A---TGTGTCT-----ATGATACG-TGTAT-GTATTATTTTAA--TTCAACGCATGTTTC--GAAC-AAA--A--TATTAAAAT---A--TT----TTCCAT--CACAATT--CT--TTTAAATATTAAATATAACTTTGAT---ATATTTTAATGCTTTGGAAAG--GA--ATTAATCTGCG-A-AAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATT
gi|17 : ctagtactaatatattcatatagtaatacattcataatgcaatgaTTCGTTTGATGCGGAAACGT------AAGTAAAA--GGGATTTTACCATTGGTGTGAGTCTCTTA---AA-AGCACACTTCGTTTT
gi|15 : tcatatcttatatatatcttaatatattcataatgcaatcaTTCGTTTGATGCGGAAACGTTAGT-AAATTG--------GATTTTACACTGGCGTGAGTCTCTTC---AGTAGCACAAAACGTTTTaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcttaatagctatacagatta
gi|28 : tatttatatttttatttgggtttacattcctgttacaacgaTTCGGTTGATGCGGAAACGTTAGT-AAAaagaagggtggtagcaacgttgataaagtgttggtcatttactcaaaatgttgcgtgtttggtcgtctaaatgtctaaaaagaatcaatgcttctaacaacataactgataatgtatctaatagatgtaactgagttgtattattttgattgacgttttcaaaccacattatatgcatttttatcacaggttttgtttttaaatatcgaattcaactttgataaaa
gi|3 : atttatattttcatttgggtttacattcctggtataacgaTTGTTTGATGCGGAAACGTAAGT---AG---AA--TGGACTTTAACAGTGGTGTGAATCT--TA--------TACAATACGTTTTAAGAAGGATGGTAGCGCAGTTGATCGAGTGTTGACCGCTTACTCCAAACCTTGCGGGTTTAGTCG-TCTTAATGGCCATACAGATT-ACAACTTCTCGCCTCTTTCATTCATCATCAAAAGAGTCAATGAGACCTACAACATAAC---TA---ATT--T---TGTGTCT-----CTGAAATT-TATAT-GTATTATCTTAA--TT----GC-TGTT----AAGA-AAA--AA-CTT---AAA---A--T-GCATTTCCAT--CATATTT--CT--TTTAAATATTGAATTTAACTTTGAT---GCAAGTTAATG--------------------ATTTG-G-A-AAG-------------AAA-CCGCTTGAAAGTGTATCTAATCGGAAGAAGT-ATAGCTGACAACGTGACTGACCACTTGTGCGTTTCTGCAAATGAAACAATTTTAC-AAACAATAGTAA--TATTATTCAAAAGGG--CTGAGTTGAGGGGTGCTCCATCGTTCGCTCAATGACGATATACCTGGATCGAGGC----GTTTCACTGCTAACTATAGTGGGTATTATTTCAAGCTC-ATTTTATGCATGTGTAATCGTTTGC--TCC-GAACTTC-AAAAAAGCCAGG-CC-TCTGGTTCTGATAATTGACAACCATGAtt
gi|21 : gtataaatatcttaataaagtaatacactcataatgcaatgaaTTTGATGTAGAAACATA-----AAGTAAAAATGGGATTTGAACATTGCTGTATGTCCCT
gi|6 : tccccataatgtcatgtgttcatagatgtatccaatgaCGGAAACGTAGGT-AAA------------ATT-AACATTGGTGTAAGTCTCTTA---AAGAGCACAATGCGTTTTAAGAAGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG-TTTTAATGACCGTACATATT-ACCAGTCCTCGTCTGTT-CATTCATCATCAAAACAGTCAATGAGCCTTACAACGTAA-----------T--A---TGTGTCT-----CTGAA--TGTATGT-GTATTA-TTTTAG-TT----GT-TATTTC--GAAA-AAT--A--CTT---AAA---A--T-GCATTTCCAT--CAGATTT--GT--TTTAAATATTGAATTTAAC-TTAATGAAACAACTTAATGTTTTGGAAAG--GA--ATTGATCTGCG-A-AATGTTGATTTGACCAAAA-CGGTTTGAAAGTGTATTTAATCGGAAGTAGTAGCAGCTGACCACCTGACTGCCCACTTGTGTGTTTCTGCAAATGAAACA--TTTAACAAACAATAGTAA--TATTATTTGAAAGGG--TTTGGTGGAGGGTTGCTTCACCGTACGTTCAATGACGATATACCTGGATCCTTGC----TTTTCACTGATAATCATTGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACTGTTTGC--TCC-GAACTTT-AGAAAAGTCACA-CCTTGTTGTTATAATAATTGACAACCATG
gi|4 : AAGTAAAA--TTGAATTTAACATTGGCGTGAGTCTATTA---GAGAGCACCATACGTTCTAAGAAGAATGTACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-TTAATGGCCATACAGATG-ACCAATCCTCGTCTTTT-CATTCATCATCAAAAGAGTCAATGTGCCTTACAACA--ACATGTA---ATT--A---TGTGTCT-----CCGAAACA-TATAT-GAATTA---TTA--AA----A-------A--AATA-AAA--A--TA----AAT---AAAGTACATTTCCAT--CATAATT--CTATTTTAGATATTGAATTTAACTTTGAT---ACAACTTAATGTTTTGGAAAG--TA--ATTAATCTGCG-G-AAGTTTGATTTGACCAAAA-CCGCGTGGAAGTGTATTTAATCGGAAGTATTAATAGCTGACCACGTGACGGCCCACTTGTGAGTTTCTGCAAATGAAACAGTATTAC-AAACAATACTAA--TATTATT----GGGG--ATGGGTAGAGGGGTGCTCCACTGTACGTCCAATGACGATATACCTGGATCGTGAC----TTTTCACTGCTAATCATAGT---T-TTGTTTCAAGCTC-AGTTTATGAATGTGTAACAGTTTGC--TCC-GAACTT----------CAGA-CT-TGCTGTTCTAGTAACTGACAACCATG
gi|13 : ctagtattaatatcttcatataataatacatccataacgcTTGGCGTTAGTCTCTTA---AAGAGCAATAGACATTCTAAGAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCAATGGCCATACAGATT-ACCAGTCCTTGTCTGTT-CA----------AAAGAGTAAATGAGCCTTACAACCTAAC---TA---ATC--A---TGTGTCT-----CTGAAACT-TAT---GTATTATTTTAA--TT----GC-TGTTCC--GAAA-AAA--A--CAT---TAA---A--GTGAATTTCTAT--CACAATT--CT--TCTAAATATTAAATTTAACTTTGAA---ACAA---ACTGTTTTGGAAAG--GA--ATTAATCTGCG-A-AAGGGTGA-TGGACCAAAACCCGCTTGGAAGTGTATTTAGTCGGAAGTAGTAACAGCTGACCACGTGACTGTCTAC----GTGTTTTTAC-AATAAAACAT
gi|8 : TGATGTGAGTCTCTTATGAAAGAGCACAATACGTTCTAAGAAGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG-TCTTAATGGACATAGAGATTTGTCCGTCGTCGATTGTT-CATTTATCATCAAAAGAGTCAATGAACCTTACAACATAAC---CA---ATT--G---TGTGTCT-----TTGAAATG-TATAT-GTATTATTCTAA--TT----GC-TGTTTCGAAATA-AAA--G--CTT---AA----A--GTGCCTTTTCAT--TATACTT--CT--TTTAAATATTGAATTAAGTATTGAT---ACAACTTACTGTTTCGGAAAG--GA--ATACATCTGCGAA-AAGGTA-ACTTTACCAAAA-CCGCTTGGAAGTGTATTTAATTGGAAGCAGTAACCGGTGATCACGTGACTGACCACTTGCGTGTGTCTGCAAAAGAAACATTTTCAC-AAACAATAATAA--TATTATTTAATGGGG--CTGGGTGGAAGGGTGCTCCACTGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAATCATAGTGGGTATTGATTAAAGCTT-ATTTTATGAATGTGTAACAGTTTAC--TCCGAC-CTTC-AGAAAAATCATA-C----TTGTTATAATAATTGAAAACCATG
gi|9 : AGTCTTTTA---AAAAGCACACTACGTTTTTAGAAGAGTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-TCTTAATGGCCATACAGAT--------CCTCGTCTGTT-CATTCATCATCAAAAGAGTCAAATAGCCTGACAACATTAC---TA---CTT--A---TGTGTCT-----CTGAAACT-TAT---GTAT-AATTTTAA-TT----GC-TGTTTC--TAAA-AAA--A--CTT---AAT------CTGCATTTCCAT--CATATTT--CT--TTTAAATATTGAATTTTAGTTTGAT---ACAACTTAATGTTTTGGAAAGAGGA--ATTAATCTGCG-A-AAGGATGATTTCACCAAAA-CCGCTTGTGAATGTATTTAACCGGAAGTTATAACAGCTGACCACGTAACTGCCCACTTATGTGTTTCTTCAAATGAAACATTTTTAA-AAATAATACTAATTTATGATTCAAAGGGG--CTGGGTGGAGGGGTGCTCAACCGTACGTTGAATGACGATATACCTGGATCTTGGCTCAGTTTTC-CTGATAACCATAATGTGTATTGTATCAAAGTC-ATTTTATGAATGTGTA--AATTTGTGCTTC-GAACTTC-AGAAAAGTCCGA-CC-TGTTGT---AATAATTGACAACCAT
gi|19 : ACAATACGTTCTAAGAAGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG-TCTTAATGACTATACAGATT-ACCAGTCCAGGTCTATT-CATTCATCATCAAAAG-------------TACAGCATAAC---AA---Aa
gi|5 : -TCTTAATGGCCATACAGATT-GCCAGTCCTCATCTGTT-CATTCATCA---AAACAGTCAATGAACCTTACAACACAAC---TA---ATT--A---TGTGTCT-----CTCAAACT-TATAT-GTATTCTTTTAA--TT----GC-TGTTTT--GAAA-AAA--AATCTT---AA----A--GTGCATTTCCAT--CATAATT--CT--TTCAAATATTGAATTTAACTTTGAT---AAAACGTAATGTTTTGGAAAG--GA--AT----------A-AAGGT-GATTTGACCAAA--CCGCTTGT---TGTATTTAATCTATAATATTGACAGCTGACCACGTGACTGCCAACTT--------CTGCAGAAAAAAAACTTTTAC-AAACAATTGTAA--TATTATTTTA--TGGGACTGGGTGGAAGGGTGCTCCATCGTAAGTTCAATGACGATAAACATGGATCGTGGC----TTTT--CTGCTAATCATAGCGGGTATTGTTTCAGGCTCAATTTTATGAATGTGTATCA-TTTGC--TCC-AAACTTC-AGAAAAGCCAGA-C----TTGTTCTAATAATTGACAACCAT
gi|14 : aacgcaatgcttcgttcaatgcggaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng-TCTTACTGGCCATACAGATT-ACCAGCCCTTGTCAGTA-TATTCATCATTAAAAGAGTCAATGAGCCTTACAACATAAC---TA---AAT--A---TGTATCT-----CTGTAACT-TA-ATAGTAT-AATTTTAA-TT----GC-TAATTC--GA----AA--A--CAA---AATTGAA--ATGCATTTCCTT--CATATTT--CT--TTTAAACGTTGAAATTAACTTTGAT---GCAATTTA-TGTTTTGGAAAG--GA--ATTATTCTGCG-ATCGGGT-GATTTGACCAAAA-CCGTTTGGAAGTGTATTGAATCGGAAGTAGTAATAGCTGACCACATGACTGCCCACTTGTGTGTTTCTGCAAATGAAACA-TTTTAC-AAACAATAGCAA---ATCTTTTCAAAGGG--CTGTGTGGAGGTGTGCTTCATCGa
gi|15 : AAAGAATCAATGCTTCTAACAACATAAC---TG---ATA--A---TGTATCTAATAGATGTAACT-GAGTT-GTATTATTTTGA--TT----GA-CGTTT-----TC-AAACCA--CAT---TAT---A---TGCATTTTTATCACAGGTTTTGTT--TTTAAATATCGAATTCAACTTTGAT---AAAA
gi|10 : tatttatatttttatttgggtttacattcctgttacaacgattcgtttgatgcggaaacgttagtaaattggattttacactggcgtgagtctcttcagtagcacaaaacgttttaagaagggtggtagcaacgttgataaagtgttggtcatttactcaaaatgttgcgtgtttggtcgtctaaatgtctaaTCAATGAGCTTTACAACGTAAT---TA---ATT--AACATGTGTCT-----CTGATACT-TATGT-GTATTATTTCAA--TT----TTCTGTTTC--GAAA-ACA--A--AAT---GAA---A--GTGCATTTCCAT--CATAATT--CT--TTTAGATATTGAATTTAACTTTGAT---GTAACTTAATGTTTTGGAAAG--GA--AATAATCTACA-A-AAGGGTGATTTGATAAAAT-CCGCTTGGAAGTGTATTTAATCGGAAGAAGTAACAGCTGACCACGGGACTGCTCACTAGTGTGCTTC---------AACACT------AAATATTACTCA---GTTG--------GG--CTTGGTGGAAGAGTGCTCCACCGTACGTTCAATGACGATATACTTTGTTCGTGGC----TTTTGACTTCTAATCATAGTAGGTATTGTTTCGCGCTC-ATTTTATGAATGTGTATCAGTTTGC--TCTGAC-CTTC-AGAAAAAACAAA-AT-TGTTGTTCTAATAATTGACACCCATG
gi|25 : ataCTTAATGTTTTGGAAAT--GACTATT--TCTGCG-A-AAGGGTGATTTTACCAAAA-CTGCTTGGAAGTGTATTT-ATCGGAAGTAG
gi|16 : TCTGCAAATGAAACAATTTTTC-AAACAGTGGTAA--TATTATTCAAAGTTG--CTGGGTGGTGGGGTGCTCCAACGTACATTCAATGGCGATACAC-------GTGGC----TTTTCACTGCTAACCATAATGGGTATTGTTTCCAGCTG-GTTGTATGAATGTGTAACAGTTTGC--TCC-GAACTTT-AGAAAAGCCAGA-CC-TCTTGTTCTGATAATTGATGAACATG
gi|29 : AACGTATAATAGTTTGC--CCT-GAACTTC-AGAAAAGCCAGA-CT-TGTTGTTGTAATAATTGAAAACCATG
gi|30 : TGTAACAGTTTTG--TCC-AAATTTC-AGAAAAGCAAAA-CC-TGTGGTTCTGATAATTGACAACCATG
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): GTAAACACTGGTAATACATTCTGATTATGATATTACAGAAAATAATACTTTGAAGTCGATATATTCATATGGTTATACGTTCATAGGTGTAAAACTTAATTTGATTAGTGAACATACATTAAATGATGTTAAACATTGCTGCATGTCCCTTTA
Unaligned ( gi|20 ): ATATTCGTATGGTTATAACTTTCATAGGTATAAAAATAGAATTGATACATTATTTGATAAAAGCAATTTAAACATTGCCTTTTATCCCTTTAACC
Unaligned ( gi|22 ): ATGATTATACGTCGATAGGTGTAAAACGCGAACATATATTTTATACCAAATTGATTTCAACATTTAAACATTATTACGTGTTCCTTTTA
Unaligned ( gi|23 ): TATAGTTAAACGTACATTGTTGTAAAAAGTTGATTTGATTCATGAACATGAGTGAAAATGCCATTCAACATTTGTGCATGTCCCTTTA
Unaligned ( gi|24 ): TTGATATCTTTACATGGCCACACATTCATAGTTGTATATATTAATTTGAAGAAACATATAATCTCAACATTGCTGTGTGCCCTTTTA
Unaligned ( gi|26 ): TTTCAGATAACAATATTTGGAGATCAATATATCCACAAGGTCATACATCCATAGGTGTAAAGTTTTACTTGAT
Unaligned ( gi|27 ): ATAAGTTCAAAAATTAATTCGATGCGTAAACATAACTTTAAATATTTAAACATTGCTGTGTGTCCCTTCAGT
Alignments
lowQualScore : 4444444 222222
lowQualScore : 6 6666666 2 2 3 555 1 3 7777 0 22 1 1 0 22 0 44444 5 33 2 444 444 555555 2 1 2 2 5555 222 2 2 33 5 33 1 222222 444 33 33 33 0 33 33 0 33 4 2 9 44 2 22 0 7777 3 3 3 3 55 0
lowQualScore : . ....... . . . ... . . .... . .. . . . .. . ..... . .. . ... ... ...... . . . . .... ... . . .. . .. . ...... ... .. .. .. . .. .. . .. . . . .. . .. . .... . . . . .. .
lowQualScore : 2 0000000 5 2 3 444 7 1 0000 5 00 0 0 4 00 4 11111 0 11 7 444 444 333333 7 3 7 7 7777 999 7 7 77 3 77 0 111111 333 77 77 77 5 77 77 1 77 5 7 8 66 2 55 5 7777 6 1 1 1 77 8
consensus : TTCGTTTGATGCGGAAACGTAA-GT-AA-T-AAATGGANTTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GGNAGCGCNGTTGANNGAGTGNTGACCGCTTACTCCAAANNTTGCGGGTTTNGTCGTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TATAT-GTATTATTTTAA-TT----G-C-TG-TTTCG-AAA--A-AAA--CNTAAA---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGC--GAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGCAAATGAAACA-TTTTACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
Reference ( family-493 ) : TTCGTTTGATGCGGAAACGTAA-GT-AAGTGAAATGGANTTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GNNNNCGCAGTTGANNGAGTGNTNACCGCTTACTCCAAANNTTGCGGGTTTNGTCGTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TATAT-GTATTATTTTAA-TT----G-C-TG-TTTCG-AAA--A-AAA--CNTAAN---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGC--GAAAGGNTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGCAAATGAAACANTTTTACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAATCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
gi|1 : TTCGTTTGATGCGGAAACGTAA-GT----TGAA-TTGAATTT-AACATTGGTGTGAGTTTCTTA---AAGAGCACAGTACGTTTTTAGATGGAT-GGTAACGCAGTTGAAAGAGTGGTCACCGCTTACTCCAAAGATTACGGGTTTTATCATCATGATGACCATACAGATTTACCAGTCCGCGTCT-GTT-CATTCAACATCAAAAGAGTCAATGAGCCTTACAAC-TACC---TATGAATTCAA---TGT--------AACT-TATAT-GTATTATTTTAA-TT----G-C-TG-TATCG-AAA--A-AAA--CTTAA----AGTGCATTTCCATCATA--TTG--CT--TTTAAATATTGAACTTAACTT--TTTTACACATTAATGTTTTGGAATG--AA--ATGAATCTGC--GAAAGGGTGGTTTGACCAAAA-CAGGTTGAAAGTGTATTTAATCGGAAGTAGTAACAGCTGACAACAGGACTGCATACTTGTGTGTATCTACAAATGAAACATTTTTACAAACATAAGTAA--TATCATCTAATTGGGCTGGGAGGAGGGGTGCTCCGCCGTACGCTAAATGACGATATACATGGATCGTAAC----TTTTCACTGTTTATCATAGTGGGTATTGCTTCAAGATC-ATTTTATGAATGTGTTACAGTT-TGCTCCGAACTTATAAAAAAGCCAGATCT-TGTTCTTCTTATAACAGACAACCA
gi|10 : ttaatatattcatataataatacatttatagtggaatgaTCAATGAGCTTTACAACGTAAT---TA---ATT--AACATGTGTCTCTGATACT-TATGT-GTATTATTTCAA-TT----TTC-TG-TTTCG-AAA--A-CAA--AATGAA---AGTGCATTTCCATCATA--ATT--CT--TTTAGATATTGAATTTAACTT--TGATGTAACTTAATGTTTTGGAAAG--GA--AATAATCTAC--AAAAGGGTGATTTGATAAAAT-CCGCTTGGAAGTGTATTTAATCGGAAGAAGTAACAGCTGACCACGGGACTGCTCACTAGTGTGCTTC---------------------AACACTA--AA--TATTACTCAGTTGGGCTTGGTGGAAGAGTGCTCCACCGTACGTTCAATGACGATATACTTTGTTCGTGGC----TTTTGACTTCTAATCATAGTAGGTATTGTTTCGCGCTC-ATTTTATGAATGTGTATCAGTT-TGCTCTGACCTT-CAGAAAAAACAAA-AT-TGTTGTTCTAATAATTGACACCCATGc
gi|11 : ataTTCGTTTAATGCGGAAACATAC-GT-AG----AATGGATTTT-AACATTGGTGTGAGTC----------------AACACGTTTTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTAATAGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAACGAGTCCATTAGCATTACAATATAAC---TC---AGG--A---TGTGTCTCTGAAACT-TAAAT-GTATTATTTTAAATT----G-T-TG-TTTCGAAAA--A-AAA--CTTAAA---A-TGTATTTCCATCATA--TTT--CT--TTCAAATATTAAATTTAATTT--TGATATAACTTAATGTTTCGGAAAA--GA--ATTAATCTGC--GAAAGGGTGATTTGATCAAAA-CCGCTTGGAAGTGTA-TTAATCGGAAGTAGTAACAGC
gi|12 : tagtatttcaagtagtaaaacattcaaaatgcaacgaTTCGTTTGATGCGGAAACGTAA-GT----T-AAATGGAATTT-AACATTGGTGCAAGTCTCTTA---AAGAG--------ATTCTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATGACCATATAAATT-ACCCGTCCGCGTCT-ATT-CATTCATCATCAAAAGAGTCAATGAACCTTACAGCATAAC---TG---ATT--A---TGTGTCTATGATACG-TGTAT-GTATTATTTTAA-TTCAACG-CATG-TTTCG-AAC--A-AAA--TATTAA---AATAT-TTTCCATCACA--ATT--CT--TTTAAATATTAAATATAACTT--TGATATATTTTAATGCTTTGGAAAG--GA--ATTAATCTGC--GAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATT
gi|13 : ctagtactaatatattcatatagtaatacattcataatgcaatgaTTGGCGTTAGTCTCTTA---AAGAGCAATAGACATTCTAAGAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCAATGGCCATACAGATT-ACCAGTCCTTGTCT-GTT-CA----------AAAGAGTAAATGAGCCTTACAACCTAAC---TA---ATC--A---TGTGTCTCTGAAACT-TAT---GTATTATTTTAA-TT----G-C-TG-TTCCG-AAA--A-AAA--CATTAA---AGTGAATTTCTATCACA--ATT--CT--TCTAAATATTAAATTTAACTT--TGAAACAA---ACTGTTTTGGAAAG--GA--ATTAATCTGC--GAAAGGGTGA-TGGACCAAAACCCGCTTGGAAGTGTATTTAGTCGGAAGTAGTAACAGCTGACCACGTGACTGTCTAC----GTGTTTTTAC-AATAAAACA
gi|14 : TCTTACTGGCCATACAGATT-ACCAGCCCTTGTCA-GTA-TATTCATCATTAAAAGAGTCAATGAGCCTTACAACATAAC---TA---AAT--A---TGTATCTCTGTAACT-TA-ATAGTATAATTTTAA-TT----G-C-TA-ATTCG-AAA--ACAAA--ATTGAA---A-TGCATTTCCTTCATA--TTT--CT--TTTAAACGTTGAAATTAACTT--TGATGCAATTT-ATGTTTTGGAAAG--GA--ATTATTCTGC--GATCGGGTGATTTGACCAAAA-CCGTTTGGAAGTGTATTGAATCGGAAGTAGTAATAGCTGACCACATGACTGCCCACTTGTGTGTTTCTGCAAATGAAACA-TTTTACAAACAATAGCAA---ATCTTTTCAAAGGGCTGTGTGGAGGTGTGCTTCATCGt
gi|15 : TTCGTTTGATGCGGAAACGTTA-GT-AAAT----TGGATTTT-A-CACTGGCGTGAGTCTCTTC---AGTAGCACAAAACGTTTTAAGAAGGGT-GGTAGCAACGTTGATAAAGTGTTGGTCATTTACTCAAAATGTTGCGTGTTTGGTCGTCTAAATGTCTAAAAAGA---ATCAATGCT--TCT----------AACAACATAA------------CTGATAATGTATC---TA---A-T--A---GATGT------AACT-GAGTT-GTATTATTTTGA-TT----G-A-CGTTTTC---AA--A-CCA--CATTAT---A-TGCATTTTTATCACAGGTTTTGTT--TTTAAATATCGAATTCAACTT--TGATAAAA
gi|16 : tatttatatttttatttgggtttacattcctgttacaacgaTCTGCAAATGAAACAATTTTTCAAACAGTGGTAA--TATTATTCAAAGTTGCTGGGTGGTGGGGTGCTCCAACGTACATTCAATGGCGATACAC-------GTGGC----TTTTCACTGCTAACCATAATGGGTATTGTTTCCAGCTG-GTTGTATGAATGTGTAACAGTT-TGCTCCGAACTT-TAGAAAAGCCAGA-CC-TCTTGTTCTGATAATTGATGAACATG
gi|17 : TTCGTTTGATGCGGAAACGTAA-GT-AA----AAGGGATTTT-ACCATTGGTGTGAGTCTCTTA---AA-AGCACACTTCGTTTTAA
gi|17 : tcatatcttatatatatcttaatatattcataatgcaatcaGTCTTAATAGCTATACAGATT-Atannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcttaatagctatacagatta
gi|19 : tcatatcttatatatatcttaatatattcataatgcaatcattcgtttgatgcggaaacgtaagtaaaagggattttaccattggtgtgagtctcttaaaagcacacttcgttttaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAATACGTTCTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTAATGACTATACAGATT-ACCAGTCCAGGTCT-ATT-CATTCATCATCAAAAG-------------TACAGCATAAC---AA---A
gi|2 : TTCGTTTGATGCGGAAACGTAA-GTGAAGTGAAAGGAAATTG-AACATTGGTGTTAGTCTCTTA---AAGGGCACAACACGTTTTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTAATGGTTATACAGATT-ACCAGTCCTCGTCT-GTT-CATTGATCATCTAGAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TATAT-GTATTAATTTTA-TT----G-T-TG-TTTCA-ATA--A-AAA--CATAAT---ATTGCATTTCCATTAGA--TTT--CT--TTTAAATATTGAATTTAACGT--TAATACAACTAAATGTTTTGGAAAG--GA--ATTAATCTGC--GAAAGGTAGATTTGACCAAAA-CCATTTGGAAGTGTATTTAATCGGAAGTAGTTACAGCTGACCACCTGACTGCCCACTTGTGTATTTCTGCAAATGAAACATTTTTAAAAACAATAGTAA--TGTTATTTAAAATGGCTGGGTGGAAGGATGCTCCATCGTACTTTCAATGCCGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCCAGCTC-ATTTTATGAATATGTAACAGTT-TGTTCCACACTT-AAGAAAAGCCAGA-CC-TATTGTTAAAATAATTGACAACCATGA
gi|21 : TTTGATGTAGAAACATAAAGT-AA---AAATGGGATTTGAACATTGCTGTATGTCCCT
gi|25 : tccccataatgtcatgtgttcatagatgtatccaatgaCTTAATGTTTTGGAAAT--GACTATT--TCTGC--GAAAGGGTGATTTTACCAAAA-CTGCTTGGAAGTGTATTT-ATCGGAAGTAG
gi|27 : TTCGATGCGTAAACATAA-CT----TTAAAT--ATTTA-AACATTGCTGTGTGTCCCTT
gi|28 : ataagttcaaaaattaaTTCGGTTGATGCGGAAACGTTA-GT-AAATcagt
gi|29 : atttatattttcatttgggtttacattcctggtataacgaAACGTATAATAGTT-TGCCCTGAACTT-CAGAAAAGCCAGA-CT-TGTTGTTGTAATAATTGAAAACCATGt
gi|3 : TTGTTTGATGCGGAAACGTAA-GT-AG----AATGGACTTT-AACAGTGGTGTGAATCT--TA--------TACAATACGTTTTAAGAAGGAT-GGTAGCGCAGTTGATCGAGTGTTGACCGCTTACTCCAAACCTTGCGGGTTTAGTCGTCTTAATGGCCATACAGATT-ACAACTTCTCGCCTCTTT-CATTCATCATCAAAAGAGTCAATGAGACCTACAACATAAC---TA---ATT--T---TGTGTCTCTGAAATT-TATAT-GTATTATCTTAA-TT----G-C-TG-TTAAG--AA--A-AAA--CTTAAA---A-TGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATGCAAGTTAATGATTTGGAAAG--AA--A-----CCGC-------------TTGA---------------AAGTGTATCTAATCGGAAGAAGT-ATAGCTGACAACGTGACTGACCACTTGTGCGTTTCTGCAAATGAAACAATTTTACAAACAATAGTAA--TATTATTCAAAAGGGCTGAGTTGAGGGGTGCTCCATCGTTCGCTCAATGACGATATACCTGGATCGAGGC----GTTTCACTGCTAACTATAGTGGGTATTATTTCAAGCTC-ATTTTATGCATGTGTAATCGTT-TGCTCCGAACTT-CAAAAAAGCCAGG-CC-TCTGGTTCTGATAATTGACAACCATGA
gi|30 : gtataaatatcttaataaagtaatacactcataatgcaatgaaTGTAACAGTT-TTGTCCAAATTT-CAGAAAAGCAAAA-CC-TGTGGTTCTGATAATTGACAACCATG
gi|4 : tCATAACGC-AAGTAAAATTGAATTT-AACATTGGCGTGAGTCTATTA---GAGAGCACCATACGTTCTAAGAAGAAT-GTAC-CGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATGGCCATACAGATG-ACCAATCCTCGTCT-TTT-CATTCATCATCAAAAGAGTCAATGTGCCTTACAACA--ACATGTA---ATT--A---TGTGTCTCCGAAACA-TATAT-GAATTATT--AA------------------A-AAA--ATAAA--AATAAATAAAGTACATTTCCATCATA--ATT--CTATTTTAGATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--TA--ATTAATCTGC--GGAAGTTTGATTTGACCAAAA-CCGCGTGGAAGTGTATTTAATCGGAAGTATTAATAGCTGACCACGTGACGGCCCACTTGTGAGTTTCTGCAAATGAAACAGTATTACAAACAATACTAA--TATTATT----GGGGATGGGTAGAGGGGTGCTCCACTGTACGTCCAATGACGATATACCTGGATCGTGAC----TTTTCACTGCTAATCATAGT---T-TTGTTTCAAGCTC-AGTTTATGAATGTGTAACAGTT-TGCTCCGAACTT----------CAGA-CT-TGCTGTTCTAGTAACTGACAACCATG
gi|5 : ctagtattaatatcttcatataataatacatcGTCTTAATGGCCATACAGATT-GCCAGTCCTCATCT-GTT-CATTCATCA---AAACAGTCAATGAACCTTACAACACAAC---TA---ATT--A---TGTGTCTCTCAAACT-TATAT-GTATTCTTTTAA-TT----G-C-TG-TTTTG-AAA--A-AAAATCTTAA----AGTGCATTTCCATCATA--ATT--CT--TTCAAATATTGAATTTAACTT--TGATAAAACGTAATGTTTTGGAAAG--GA--AT-----------AAAGG-TGATTTGACCAAA--CCGCTTGT---TGTATTTAATCTATAATATTGACAGCTGACCACGTGACTGCCAACTT--------CTGCAGAAAAAAAACTTTTACAAACAATTGTAA--TATTATTTTATGGGACTGGGTGGAAGGGTGCTCCATCGTAAGTTCAATGACGATAAACATGGATCGTGGC----TTTT--CTGCTAATCATAGCGGGTATTGTTTCAGGCTCAATTTTATGAATGTGTATCA-TT-TGCTCCAAACTT-CAGAAAAGCCAGA-C----TTGTTCTAATAATTGACAACCAT
gi|6 : aacgcaatgcttcgttcaatgcggaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGAAACGTAG-GT-AA----AAT------T-AACATTGGTGTAAGTCTCTTA---AAGAGCACAATGCGTTTTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATGACCGTACATATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAACAGTCAATGAGCCTTACAACGTAA-----------T--A---TGTGTCTCTGAA--TGTATGT-GTATTATTTTAG-TT----G-T-TA-TTTCG-AAA--A-ATA--CTTAAA---A-TGCATTTCCATCAGA--TTT--GT--TTTAAATATTGAATTTAACTTAATGAAACAACTTAATGTTTTGGAAAG--GA--ATTGATCTGC--GAAATGTTGATTTGACCAAAA-CGGTTTGAAAGTGTATTTAATCGGAAGTAGTAGCAGCTGACCACCTGACTGCCCACTTGTGTGTTTCTGCAAATGAAACA-TTTAACAAACAATAGTAA--TATTATTTGAAAGGGTTTGGTGGAGGGTTGCTTCACCGTACGTTCAATGACGATATACCTGGATCCTTGC----TTTTCACTGATAATCATTGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACTGTT-TGCTCCGAACTT-TAGAAAAGTCACA-CCTTGTTGTTATAATAATTGACAACCATGa
gi|7 : TTTGTTTGATGCGGAAACGTAA-GT-AG----AATGGATTTC-AACNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------GTCTTAATTGCCATACAGATT-ACCAGTCCTCGCCT-CTTTCATTCATCATCAAAAGAGTCAATGAGACCTAAAACATAAC---AT---ATT------TGTGTCTCTGAAATG-TATAT-GTATTATCTTAA-TT----G-T-TG-TTAAG-AGA--A-AA---CGTAAA---A-TGCGTTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAAGTTAATGATTTGGAAA---------TAAACCGCTAGAAAGTGT-ATCT------AA-TCG--------------------GAAGAAGTAACAGCTGACCACGTGACTGACCACTTTTGCGTTTCTG-----------------CAAACAATAGTAA--TATTATTAAAAAGGATT-----GAGGGGTGCT-----G-------AATGACGATATACCTTGATCGAAGC----TTTTTACTGTTAACTATAGTGGGTATTATTTCAAGCTA-ATTTTATGAATGTATAATACTT-TGCTCCGAACTT-CAGAAAAGCTAGG-CC-TCTGGTTCTGATAATTGACAACCAT
gi|8 : gtataaatatcttgatatagtaatacattcataatgcgctgaTGATGTGAGTCTCTTATGAAAGAGCACAATACGTTCTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTAATGGACATAGAGATTTGTCCGTCGTCGATT-GTT-CATTTATCATCAAAAGAGTCAATGAACCTTACAACATAAC---CA---ATT--G---TGTGTCTTTGAAATG-TATAT-GTATTATTCTAA-TT----G-C-TG-TTTCG-AAATAA-AAG--CTTAA----AGTGCCTTTTCATTATA--CTT--CT--TTTAAATATTGAATTAAGTAT--TGATACAACTTACTGTTTCGGAAAG--GA--ATACATCTGC--GAAAAGGTAACTTTACCAAAA-CCGCTTGGAAGTGTATTTAATTGGAAGCAGTAACCGGTGATCACGTGACTGACCACTTGCGTGTGTCTGCAAAAGAAACATTTTCACAAACAATAATAA--TATTATTTAATGGGGCTGGGTGGAAGGGTGCTCCACTGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAATCATAGTGGGTATTGATTAAAGCTT-ATTTTATGAATGTGTAACAGTT-TACTCCGACCTT-CAGAAAAATCATA-C----TTGTTATAATAATTGAAAACCATGa
gi|9 : AGTCTTTTA---AAAAGCACACTACGTTTTTAGAAGAGT-GTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTTAATGGCCATACAGAT--------CCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAAATAGCCTGACAACATTAC---TA---CTT--A---TGTGTCTCTGAAACT-TAT---GTATAATTTTAA-TT----G-C-TG-TTTCT-AAA--A-AAA--CTTAAT---C-TGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTTAGTT--TGATACAACTTAATGTTTTGGAAAGAGGA--ATTAATCTGC--GAAAGGATGATTTCACCAAAA-CCGCTTGTGAATGTATTTAACCGGAAGTTATAACAGCTGACCACGTAACTGCCCACTTATGTGTTTCTTCAAATGAAACATTTTTAAAAATAATACTAATTTATGATTCAAAGGGGCTGGGTGGAGGGGTGCTCAACCGTACGTTGAATGACGATATACCTGGATCTTGGCTCAGTTTTC-CTGATAACCATAATGTGTATTGTATCAAAGTC-ATTTTATGAATGTGTAA-ATTTGTGCTTCGAACTT-CAGAAAAGTCCGA-CC-TGTTG---TAATAATTGACAACCAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTAAACACTGGTAATACATTCTGATTATGATATTACAGAAAATAATACTTTGAAGTCGATATATTCATATGGTTATACGTTCATAGGTGTAAAACTTAATTTGATTAGTGAACATACATTAAATGATGTTAAACATTGCTGCATGTCCCTTTA
Unaligned ( gi|20 ): ATATTCGTATGGTTATAACTTTCATAGGTATAAAAATAGAATTGATACATTATTTGATAAAAGCAATTTAAACATTGCCTTTTATCCCTTTAACC
Unaligned ( gi|22 ): ATGATTATACGTCGATAGGTGTAAAACGCGAACATATATTTTATACCAAATTGATTTCAACATTTAAACATTATTACGTGTTCCTTTTA
Unaligned ( gi|23 ): TATAGTTAAACGTACATTGTTGTAAAAAGTTGATTTGATTCATGAACATGAGTGAAAATGCCATTCAACATTTGTGCATGTCCCTTTA
Unaligned ( gi|24 ): TTGATATCTTTACATGGCCACACATTCATAGTTGTATATATTAATTTGAAGAAACATATAATCTCAACATTGCTGTGTGCCCTTTTA
Unaligned ( gi|26 ): TTTCAGATAACAATATTTGGAGATCAATATATCCACAAGGTCATACATCCATAGGTGTAAAGTTTTACTTGAT
Alignments
lowQualScore : 4444444 11111 111
lowQualScore : 3 1111111 2 2 3 555 1 3 33 0 1 22 1 0 0 22 0 44444 5 33 2 444 444 555555 2 1 2 2 5555 222 2 2 2 5 33 1 3 66666 444 33 33 33 0 33 33 0 2 0 44 333 3 3 44 2 22 0 7777 3 3 3 3 55 0
lowQualScore : . ....... . . . ... . . .. . . .. . . . .. . ..... . .. . ... ... ...... . . . . .... ... . . . . .. . . ..... ... .. .. .. . .. .. . . . .. ... . . .. . .. . .... . . . . .. .
lowQualScore : 1 1111111 5 2 3 444 7 1 55 8 0 00 0 4 4 00 4 11111 0 11 7 444 444 333333 7 3 7 7 7777 999 7 7 7 3 77 0 2 66666 333 77 77 77 5 77 77 1 7 5 22 888 3 3 66 2 55 5 7777 6 1 1 1 77 8
consensus : TTCGTTTGATGCGGAAACGTAA-GTAA-----AATGGANTTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GGTAGCGCNGTTGANNGAGTGNTGACCGCTTACTCCAAANNTTGCGGGTTTNGTCGTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TATAT-GTATTATTTTAA-TT----G-C-TG-TTTCG-AAA-A-AAA--CNTAAA---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
Reference ( family-493 ) : TTCGTTTGATGCGGAAACGTAA-GTAA--T-AAATGGANTTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GGNAGCGCNGTTGANNGAGTGNTGACCGCTTACTCCAAANNTTGCGGGTTTNGTCGTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TATAT-GTATTATTTTAA-TT----G-C-TG-TTTCG-AAA-A-AAA--CNTAAA---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
gi|1 : TTCGTTTGATGCGGAAACGTAA-GT----T-GAATTGAATTT-AACATTGGTGTGAGTTTCTTA---AAGAGCACAGTACGTTTTTAGATGGAT-GGTAACGCAGTTGAAAGAGTGGTCACCGCTTACTCCAAAGATTACGGGTTTTATCATCATGATGACCATACAGATTTACCAGTCCGCGTCT-GTT-CATTCAACATCAAAAGAGTCAATGAGCCTTACAAC-TACC---TATGAATTCAA---TGT--------AACT-TATAT-GTATTATTTTAA-TT----G-C-TG-TATCG-AAA-A-AAA--CTTAAA----GTGCATTTCCATCATA--TTG--CT--TTTAAATATTGAACTTAACTT--TTTTACACATTAATGTTTTGGAATG--AA--ATGAATCTGCGAAAGGGTGGTTTGACCAAAA-CAGGTTGAAAGTGTATTTAATCGGAAGTAGTAACAGCTGACAACAGGACTGCATACTTGTGTGTATCTAC--AAATGAAAC-ATTT-TT-ACAAACATAAGTAA--TATCATCTAATTGGGCTGGGAGGAGGGGTGCTCCGCCGTACGCTAAATGACGATATACATGGATCGTAAC----TTTTCACTGTTTATCATAGTGGGTATTGCTTCAAGATC-ATTTTATGAATGTGTTACAGTT-TGCTCCGAACTTATAAAAAAGCCAGATCT-TGTTCTTCTTATAACAGACAACCA
gi|10 : ttaatatattcatataataatacatttatagtggaatgaTCAATGAGCTTTACAACGTAAT---TA---ATT--AACATGTGTCTCTGATACT-TATGT-GTATTATTTCAA-TT----TTC-TG-TTTCG-AAA-A-CAA--AATGAA---AGTGCATTTCCATCATA--ATT--CT--TTTAGATATTGAATTTAACTT--TGATGTAACTTAATGTTTTGGAAAG--GA--AATAATCTACAAAAGGGTGATTTGATAAAAT-CCGCTTGGAAGTGTATTTAATCGGAAGAAGTAACAGCTGACCACGGGACTGCTCACTAGTGTGCTTC--------------------------AACACTA--AA--TATTACTCAGTTGGGCTTGGTGGAAGAGTGCTCCACCGTACGTTCAATGACGATATACTTTGTTCGTGGC----TTTTGACTTCTAATCATAGTAGGTATTGTTTCGCGCTC-ATTTTATGAATGTGTATCAGTT-TGCTCTGACCTT-CAGAAAAAACAAA-AT-TGTTGTTCTAATAATTGACACCCATGc
gi|11 : ataTTCGTTTAATGCGGAAACATAC-GTAG-----AATGGATTTT-AACATTGGTGTGAGTC----------------AACACGTTTTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTAATAGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAACGAGTCCATTAGCATTACAATATAAC---TC---AGG--A---TGTGTCTCTGAAACT-TAAAT-GTATTATTTTAAATT----G-T-TG-TTTCGAAAA-A-AAA--CTTAAA---A-TGTATTTCCATCATA--TTT--CT--TTCAAATATTAAATTTAATTT--TGATATAACTTAATGTTTCGGAAAA--GA--ATTAATCTGCGAAAGGGTGATTTGATCAAAA-CCGCTTGGAAGTGTA-TTAATCGGAAGTAGTAACAGC
gi|12 : tagtatttcaagtagtaaaacattcaaaatgcaacgaTTCGTTTGATGCGGAAACGTAA-GT----T-AAATGGAATTT-AACATTGGTGCAAGTCTCTTA---AAGAG--------ATTCTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATGACCATATAAATT-ACCCGTCCGCGTCT-ATT-CATTCATCATCAAAAGAGTCAATGAACCTTACAGCATAAC---TG---ATT--A---TGTGTCTATGATACG-TGTAT-GTATTATTTTAA-TTCAACG-CATG-TTTCG-AAC-A-AAA--TATTAA---AATAT-TTTCCATCACA--ATT--CT--TTTAAATATTAAATATAACTT--TGATATATTTTAATGCTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATT
gi|13 : ctagtactaatatattcatatagtaatacattcataatgcaatgaTTGGCGTTAGTCTCTTA---AAGAGCAATAGACATTCTAAGAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCAATGGCCATACAGATT-ACCAGTCCTTGTCT-GTT-CA----------AAAGAGTAAATGAGCCTTACAACCTAAC---TA---ATC--A---TGTGTCTCTGAAACT-TAT---GTATTATTTTAA-TT----G-C-TG-TTCCG-AAA-A-AAA--CATTAA---AGTGAATTTCTATCACA--ATT--CT--TCTAAATATTAAATTTAACTT--TGAAACAA---ACTGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGA-TGGACCAAAACCCGCTTGGAAGTGTATTTAGTCGGAAGTAGTAACAGCTGACCACGTGACTGTCTAC----GTGTTTTTAC---AATAAAAC-A-T
gi|14 : TCTTACTGGCCATACAGATT-ACCAGCCCTTGTCA-GTA-TATTCATCATTAAAAGAGTCAATGAGCCTTACAACATAAC---TA---AAT--A---TGTATCTCTGTAACT-TA-ATAGTATAATTTTAA-TT----G-C-TA-ATTCG-AAA-ACAAA--ATTGAA---A-TGCATTTCCTTCATA--TTT--CT--TTTAAACGTTGAAATTAACTT--TGATGCAATTT-ATGTTTTGGAAAG--GA--ATTATTCTGCGATCGGGTGATTTGACCAAAA-CCGTTTGGAAGTGTATTGAATCGGAAGTAGTAATAGCTGACCACATGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGCAA---ATCTTTTCAAAGGGCTGTGTGGAGGTGTGCTTCATCG
gi|15 : TTCGTTTGATGCGGAAACGTTA-GTAA-----ATTGGATTTT-A-CACTGGCGTGAGTCTCTTC---AGTAGCACAAAACGTTTTAAGAAGGGT-GGTAGCAACGTTGATAAAGTGTTGGTCATTTACTCAAAATGTTGCGTGTTTGGTCGTCTAAATGTCTAAAAAGA---ATCAATGCT--TCT----------AACAACATAA------------CTGATAATGTATC---TA---A-T--A---GATGT------AACT-GAGTT-GTATTATTTTGA-TT----G-A-CGTTTTC---AA-A-CCA--CATTAT---A-TGCATTTTTATCACAGGTTTTGTT--TTTAAATATCGAATTCAACTT--TGATAAAA
gi|16 : tatttatatttttatttgggtttacattcctgttacaacgaTCTGC--AAATGAAAC-AATT-TT-TCAAACAGTGGTAA--TATTATTCAAAGTTGCTGGGTGGTGGGGTGCTCCAACGTACATTCAATGGCGATACAC-------GTGGC----TTTTCACTGCTAACCATAATGGGTATTGTTTCCAGCTG-GTTGTATGAATGTGTAACAGTT-TGCTCCGAACTT-TAGAAAAGCCAGA-CC-TCTTGTTCTGATAATTGATGAACATG
gi|17 : TTCGTTTGATGCGGAAACGTAA-GTAA-----AAGGGATTTT-ACCATTGGTGTGAGTCTCTTA---AA-AGCACACTTCGTTTTAA
gi|17 : tcatatcttatatatatcttaatatattcataatgcaatcaGTCTTAATAGCTATACAGATT-Atannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcttaatagctatacagatta
gi|19 : tcatatcttatatatatcttaatatattcataatgcaatcattcgtttgatgcggaaacgtaagtaaaagggattttaccattggtgtgagtctcttaaaagcacacttcgttttaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAATACGTTCTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTAATGACTATACAGATT-ACCAGTCCAGGTCT-ATT-CATTCATCATCAAAAG-------------TACAGCATAAC---AA---A
gi|2 : TTCGTTTGATGCGGAAACGTAA-GTGAAGTGAAAGGAAATTG-AACATTGGTGTTAGTCTCTTA---AAGGGCACAACACGTTTTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTAATGGTTATACAGATT-ACCAGTCCTCGTCT-GTT-CATTGATCATCTAGAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TATAT-GTATTAATTTTA-TT----G-T-TG-TTTCA-ATA-A-AAA--CATAAT---ATTGCATTTCCATTAGA--TTT--CT--TTTAAATATTGAATTTAACGT--TAATACAACTAAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGTAGATTTGACCAAAA-CCATTTGGAAGTGTATTTAATCGGAAGTAGTTACAGCTGACCACCTGACTGCCCACTTGTGTATTTCTGC--AAATGAAAC-ATTT-TT-AAAAACAATAGTAA--TGTTATTTAAAATGGCTGGGTGGAAGGATGCTCCATCGTACTTTCAATGCCGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCCAGCTC-ATTTTATGAATATGTAACAGTT-TGTTCCACACTT-AAGAAAAGCCAGA-CC-TATTGTTAAAATAATTGACAACCATGA
gi|21 : TTTGATGTAGAAACATAAAGTAA----AAATGGGATTTGAACATTGCTGTATGTCCCT
gi|25 : tccccataatgtcatgtgttcatagatgtatccaatgaCTTAATGTTTTGGAAAT--GACTATT--TCTGCGAAAGGGTGATTTTACCAAAA-CTGCTTGGAAGTGTATTT-ATCGGAAGTAG
gi|27 : TTCGATGCGTAAACATAA-CTT---T-AAAT--ATTTA-AACATTGCTGTGTGTCCCTT
gi|28 : ataagttcaaaaattaaTTCGGTTGATGCGGAAACGTTA-GTAA--cagt
gi|29 : atttatattttcatttgggtttacattcctggtataacgaAACGTATAATAGTT-TGCCCTGAACTT-CAGAAAAGCCAGA-CT-TGTTGTTGTAATAATTGAAAACCATGatt
gi|3 : TTGTTTGATGCGGAAACGTAA-GTAG-----AATGGACTTT-AACAGTGGTGTGAATCT--TA--------TACAATACGTTTTAAGAAGGAT-GGTAGCGCAGTTGATCGAGTGTTGACCGCTTACTCCAAACCTTGCGGGTTTAGTCGTCTTAATGGCCATACAGATT-ACAACTTCTCGCCTCTTT-CATTCATCATCAAAAGAGTCAATGAGACCTACAACATAAC---TA---ATT--T---TGTGTCTCTGAAATT-TATAT-GTATTATCTTAA-TT----G-C-TG-TTAAG--AA-A-AAA--CTTAAA---A-TGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATGCAAGTTAATGATTTGGAAAG--AA--A-----CCGC-----------TTGA---------------AAGTGTATCTAATCGGAAGAAGT-ATAGCTGACAACGTGACTGACCACTTGTGCGTTTCTGC--AAATGAAACAA-TT-TT-ACAAACAATAGTAA--TATTATTCAAAAGGGCTGAGTTGAGGGGTGCTCCATCGTTCGCTCAATGACGATATACCTGGATCGAGGC----GTTTCACTGCTAACTATAGTGGGTATTATTTCAAGCTC-ATTTTATGCATGTGTAATCGTT-TGCTCCGAACTT-CAAAAAAGCCAGG-CC-TCTGGTTCTGATAATTGACAACCATGA
gi|30 : gtataaatatcttaataaagtaatacactcataatgcaatgaaTGTAACAGTT-TTGTCCAAATTT-CAGAAAAGCAAAA-CC-TGTGGTTCTGATAATTGACAACCATG
gi|4 : tAACGCAA-GTAA-----AATTGAATTT-AACATTGGCGTGAGTCTATTA---GAGAGCACCATACGTTCTAAGAAGAAT-G-TACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATGGCCATACAGATG-ACCAATCCTCGTCT-TTT-CATTCATCATCAAAAGAGTCAATGTGCCTTACAACA--ACATGTA---ATT--A---TGTGTCTCCGAAACA-TATAT-GAATTATT--AA------------------A-AAA-ATAAA--AATAAATAAAGTACATTTCCATCATA--ATT--CTATTTTAGATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--TA--ATTAATCTGCGGAAGTTTGATTTGACCAAAA-CCGCGTGGAAGTGTATTTAATCGGAAGTATTAATAGCTGACCACGTGACGGCCCACTTGTGAGTTTCTGC--AAATGAAAC-A-GTATT-ACAAACAATACTAA--TATTATT----GGGGATGGGTAGAGGGGTGCTCCACTGTACGTCCAATGACGATATACCTGGATCGTGAC----TTTTCACTGCTAATCATAGT---T-TTGTTTCAAGCTC-AGTTTATGAATGTGTAACAGTT-TGCTCCGAACTT----------CAGA-CT-TGCTGTTCTAGTAACTGACAACCATG
gi|5 : ctagtattaatatcttcatataataatacatccatGTCTTAATGGCCATACAGATT-GCCAGTCCTCATCT-GTT-CATTCATCA---AAACAGTCAATGAACCTTACAACACAAC---TA---ATT--A---TGTGTCTCTCAAACT-TATAT-GTATTCTTTTAA-TT----G-C-TG-TTTTG-AAA-A-AAAATCTT-AA---AGTGCATTTCCATCATA--ATT--CT--TTCAAATATTGAATTTAACTT--TGATAAAACGTAATGTTTTGGAAAG--GA--AT----------AAAGGTGATTTGACC-AAA-CCGCTTG---TTGTATTTAATCTATAATATTGACAGCTGACCACGTGACTGCCAAC--------TTCTGCAGAAAAAAAAC---TT-TT-ACAAACAATTGTAA--TATTATTTTATGGGACTGGGTGGAAGGGTGCTCCATCGTAAGTTCAATGACGATAAACATGGATCGTGGC----TTTT--CTGCTAATCATAGCGGGTATTGTTTCAGGCTCAATTTTATGAATGTGTATCA-TT-TGCTCCAAACTT-CAGAAAAGCCAGA-C----TTGTTCTAATAATTGACAACCAT
gi|6 : aacgcaatgcttcgttcaatgcggaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGAAACGTAG-GTAA-----AAT------T-AACATTGGTGTAAGTCTCTTA---AAGAGCACAATGCGTTTTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATGACCGTACATATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAACAGTCAATGAGCCTTACAACGTAA-----------T--A---TGTGTCTCTGAA--TGTATGT-GTATTATTTTAG-TT----G-T-TA-TTTCG-AAA-A-ATA--CTTAAA---A-TGCATTTCCATCAGA--TTT--GT--TTTAAATATTGAATTTAACTTAATGAAACAACTTAATGTTTTGGAAAG--GA--ATTGATCTGCGAAATGTTGATTTGACCAAAA-CGGTTTGAAAGTGTATTTAATCGGAAGTAGTAGCAGCTGACCACCTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TA-ACAAACAATAGTAA--TATTATTTGAAAGGGTTTGGTGGAGGGTTGCTTCACCGTACGTTCAATGACGATATACCTGGATCCTTGC----TTTTCACTGATAATCATTGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACTGTT-TGCTCCGAACTT-TAGAAAAGTCACA-CCTTGTTGTTATAATAATTGACAACCATGa
gi|7 : TTTGTTTGATGCGGAAACGTAA-GTAG-----AATGGATTTC-AACNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------GTCTTAATTGCCATACAGATT-ACCAGTCCTCGCCT-CTTTCATTCATCATCAAAAGAGTCAATGAGACCTAAAACATAAC---AT---ATT------TGTGTCTCTGAAATG-TATAT-GTATTATCTTAA-TT----G-T-TG-TTAAG-AGA-A-AA---CGTAAA---A-TGCGTTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAAGTTAATGATTTGGAAA---------TAAACCGCTAGAAAGTG--------------------------TATCTAATCGGAAGAAGTAACAGCTGACCACGTGACTGACCACTTTTGCGTTTCTG----------------------CAAACAATAGTAA--TATTATTAAAAAGGATT-----GAGGGGTGCT-----G-------AATGACGATATACCTTGATCGAAGC----TTTTTACTGTTAACTATAGTGGGTATTATTTCAAGCTA-ATTTTATGAATGTATAATACTT-TGCTCCGAACTT-CAGAAAAGCTAGG-CC-TCTGGTTCTGATAATTGACAACCAT
gi|8 : gtataaatatcttgatatagtaatacattcataatgcgctgaTGATGTGAGTCTCTTATGAAAGAGCACAATACGTTCTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTAATGGACATAGAGATTTGTCCGTCGTCGATT-GTT-CATTTATCATCAAAAGAGTCAATGAACCTTACAACATAAC---CA---ATT--G---TGTGTCTTTGAAATG-TATAT-GTATTATTCTAA-TT----G-C-TG-TTTCG-AAATA-AAA--GCTTAA---AGTGCCTTTTCATTATA--CTT--CT--TTTAAATATTGAATTAAGTAT--TGATACAACTTACTGTTTCGGAAAG--GA--ATACATCTGCGAAAAGGTAACTTTACCAAAA-CCGCTTGGAAGTGTATTTAATTGGAAGCAGTAACCGGTGATCACGTGACTGACCACTTGCGTGTGTCTGC--AAAAGAAAC-A-TT-TTCACAAACAATAATAA--TATTATTTAATGGGGCTGGGTGGAAGGGTGCTCCACTGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAATCATAGTGGGTATTGATTAAAGCTT-ATTTTATGAATGTGTAACAGTT-TACTCCGACCTT-CAGAAAAATCATA-C----TTGTTATAATAATTGAAAACCATGa
gi|9 : AGTCTTTTA---AAAAGCACACTACGTTTTTAGAAGAGT-GTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTTAATGGCCATACAGAT--------CCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAAATAGCCTGACAACATTAC---TA---CTT--A---TGTGTCTCTGAAACT-TAT---GTATAATTTTAA-TT----G-C-TG-TTTCT-AAA-A-AAA--CTTAAT---C-TGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTTAGTT--TGATACAACTTAATGTTTTGGAAAGAGGA--ATTAATCTGCGAAAGGATGATTTCACCAAAA-CCGCTTGTGAATGTATTTAACCGGAAGTTATAACAGCTGACCACGTAACTGCCCACTTATGTGTTTCTTC--AAATGAAAC-ATTT-TT-AAAAATAATACTAATTTATGATTCAAAGGGGCTGGGTGGAGGGGTGCTCAACCGTACGTTGAATGACGATATACCTGGATCTTGGCTCAGTTTTC-CTGATAACCATAATGTGTATTGTATCAAAGTC-ATTTTATGAATGTGTAA-ATTTGTGCTTCGAACTT-CAGAAAAGTCCGA-CC-TGTTG---TAATAATTGACAACCAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTAAACACTGGTAATACATTCTGATTATGATATTACAGAAAATAATACTTTGAAGTCGATATATTCATATGGTTATACGTTCATAGGTGTAAAACTTAATTTGATTAGTGAACATACATTAAATGATGTTAAACATTGCTGCATGTCCCTTTA
Unaligned ( gi|20 ): ATATTCGTATGGTTATAACTTTCATAGGTATAAAAATAGAATTGATACATTATTTGATAAAAGCAATTTAAACATTGCCTTTTATCCCTTTAACC
Unaligned ( gi|22 ): ATGATTATACGTCGATAGGTGTAAAACGCGAACATATATTTTATACCAAATTGATTTCAACATTTAAACATTATTACGTGTTCCTTTTA
Unaligned ( gi|23 ): TATAGTTAAACGTACATTGTTGTAAAAAGTTGATTTGATTCATGAACATGAGTGAAAATGCCATTCAACATTTGTGCATGTCCCTTTA
Unaligned ( gi|24 ): TTGATATCTTTACATGGCCACACATTCATAGTTGTATATATTAATTTGAAGAAACATATAATCTCAACATTGCTGTGTGCCCTTTTA
Unaligned ( gi|26 ): TTTCAGATAACAATATTTGGAGATCAATATATCCACAAGGTCATACATCCATAGGTGTAAAGTTTTACTTGAT
Alignments
lowQualScore : 111111 11111 111
lowQualScore : 3 444 2 000000 3 555 1 3 4 1 22 1 0 0 22 0 66666666 5 33 2 444 444 555555 2 2 1 2 5555 222 2 2 2 5 33 1 3 66666 444 33 33 33 0 33 33 0 2 0 44 333 3 3 44 2 22 0 7777 3 3 3 3 55 0
lowQualScore : . ... . ...... . ... . . . . .. . . . .. . ........ . .. . ... ... ...... . . . . .... ... . . . . .. . . ..... ... .. .. .. . .. .. . . . .. ... . . .. . .. . .... . . . . .. .
lowQualScore : 1 333 5 555555 3 444 7 1 5 0 00 0 4 4 00 4 11111111 0 11 7 444 444 333333 7 7 3 7 7777 999 7 7 7 3 77 0 2 66666 333 77 77 77 5 77 77 1 7 5 22 888 3 3 66 2 55 5 7777 6 1 1 1 77 8
consensus : TTCGTTTGATGCGGAAACGT-AAGT-A-AAATGGAN-----TTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GGTAGCGCNGTTGANNGAGTGNTGACCGCTTACTCCAAANNTTGCGGGTTTNGTC-GTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TA-TATGTATTATTTTAA-TT----G-C-TG-TTTCG-AAA-A-AAA--CNTAAA---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
Reference ( family-493 ) : TTCGTTTGATGCGGAAACGT-AAGT-A-AAATGGAN-----TTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GGTAGCGCNGTTGANNGAGTGNTGACCGCTTACTCCAAANNTTGCGGGTTTNGTC-GTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TA-TATGTATTATTTTAA-TT----G-C-TG-TTTCG-AAA-A-AAA--CNTAAA---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
gi|1 : TTCGTTTGATGCGGAAACGT-AAGT-T-GAATTGAA-----TTT-AACATTGGTGTGAGTTTCTTA---AAGAGCACAGTACGTTTTTAGATGGAT-GGTAACGCAGTTGAAAGAGTGGTCACCGCTTACTCCAAAGATTACGGGTTTTATC-ATCATGATGACCATACAGATTTACCAGTCCGCGTCT-GTT-CATTCAACATCAAAAGAGTCAATGAGCCTTACAAC-TACC---TATGAATTCAA---TGT--------AACT-TA-TATGTATTATTTTAA-TT----G-C-TG-TATCG-AAA-A-AAA--CTTAAA----GTGCATTTCCATCATA--TTG--CT--TTTAAATATTGAACTTAACTT--TTTTACACATTAATGTTTTGGAATG--AA--ATGAATCTGCGAAAGGGTGGTTTGACCAAAA-CAGGTTGAAAGTGTATTTAATCGGAAGTAGTAACAGCTGACAACAGGACTGCATACTTGTGTGTATCTAC--AAATGAAAC-ATTT-TT-ACAAACATAAGTAA--TATCATCTAATTGGGCTGGGAGGAGGGGTGCTCCGCCGTACGCTAAATGACGATATACATGGATCGTAAC----TTTTCACTGTTTATCATAGTGGGTATTGCTTCAAGATC-ATTTTATGAATGTGTTACAGTT-TGCTCCGAACTTATAAAAAAGCCAGATCT-TGTTCTTCTTATAACAGACAACCA
gi|10 : ttaatatattcatataataatacatttatagtggaatgaTCAATGAGCTTTACAACGTAAT---TA---ATT--AACATGTGTCTCTGATACT-TA-TGTGTATTATTTCAA-TT----TTC-TG-TTTCG-AAA-A-CAA--AATGAA---AGTGCATTTCCATCATA--ATT--CT--TTTAGATATTGAATTTAACTT--TGATGTAACTTAATGTTTTGGAAAG--GA--AATAATCTACAAAAGGGTGATTTGATAAAAT-CCGCTTGGAAGTGTATTTAATCGGAAGAAGTAACAGCTGACCACGGGACTGCTCACTAGTGTGCTTC--------------------------AACACTA--AA--TATTACTCAGTTGGGCTTGGTGGAAGAGTGCTCCACCGTACGTTCAATGACGATATACTTTGTTCGTGGC----TTTTGACTTCTAATCATAGTAGGTATTGTTTCGCGCTC-ATTTTATGAATGTGTATCAGTT-TGCTCTGACCTT-CAGAAAAAACAAA-AT-TGTTGTTCTAATAATTGACACCCATGc
gi|11 : ataTTCGTTTAATGCGGAAACAT-ACGT-A-GAATGGAT-----TTT-AACATTGGTGTGAGTC----------------AACACGTTTTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTTAATAGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAACGAGTCCATTAGCATTACAATATAAC---TC---AGG--A---TGTGTCTCTGAAACT-TA-AATGTATTATTTTAAATT----G-T-TG-TTTCGAAAA-A-AAA--CTTAAA---A-TGTATTTCCATCATA--TTT--CT--TTCAAATATTAAATTTAATTT--TGATATAACTTAATGTTTCGGAAAA--GA--ATTAATCTGCGAAAGGGTGATTTGATCAAAA-CCGCTTGGAAGTGTA-TTAATCGGAAGTAGTAACAGC
gi|12 : tagtatttcaagtagtaaaacattcaaaatgcaacgaTTCGTTTGATGCGGAAACGT-AAGT-T-AAATGGAA-----TTT-AACATTGGTGCAAGTCTCTTA---AAGAG--------ATTCTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTTTTAATGACCATATAAATT-ACCCGTCCGCGTCT-ATT-CATTCATCATCAAAAGAGTCAATGAACCTTACAGCATAAC---TG---ATT--A---TGTGTCTATGATACG-TG-TATGTATTATTTTAA-TTCAACG-CATG-TTTCG-AAC-A-AAA--TATTAA---AATAT-TTTCCATCACA--ATT--CT--TTTAAATATTAAATATAACTT--TGATATATTTTAATGCTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATT
gi|13 : ctagtactaatatattcatatagtaatacattcataatgcaatgaTTGGCGTTAGTCTCTTA---AAGAGCAATAGACATTCTAAGAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTCAATGGCCATACAGATT-ACCAGTCCTTGTCT-GTT-CA----------AAAGAGTAAATGAGCCTTACAACCTAAC---TA---ATC--A---TGTGTCTCTGAAACT-TA-T--GTATTATTTTAA-TT----G-C-TG-TTCCG-AAA-A-AAA--CATTAA---AGTGAATTTCTATCACA--ATT--CT--TCTAAATATTAAATTTAACTT--TGAAACAA---ACTGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGA-TGGACCAAAACCCGCTTGGAAGTGTATTTAGTCGGAAGTAGTAACAGCTGACCACGTGACTGTCTAC----GTGTTTTTAC---AATAAAAC-A-T
gi|14 : TCTTACTGGCCATACAGATT-ACCAGCCCTTGTCA-GTA-TATTCATCATTAAAAGAGTCAATGAGCCTTACAACATAAC---TA---AAT--A---TGTATCTCTGTAACT-TAATA-GTATAATTTTAA-TT----G-C-TA-ATTCG-AAA-ACAAA--ATTGAA---A-TGCATTTCCTTCATA--TTT--CT--TTTAAACGTTGAAATTAACTT--TGATGCAATTTA-TGTTTTGGAAAG--GA--ATTATTCTGCGATCGGGTGATTTGACCAAAA-CCGTTTGGAAGTGTATTGAATCGGAAGTAGTAATAGCTGACCACATGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGCAA---ATCTTTTCAAAGGGCTGTGTGGAGGTGTGCTTCATCG
gi|15 : TTCGTTTGATGCGGAAACGT-TAGT-A-AATTGGAT-----TTT-A-CACTGGCGTGAGTCTCTTC---AGTAGCACAAAACGTTTTAAGAAGGGT-GGTAGCAACGTTGATAAAGTGTTGGTCATTTACTCAAAATGTTGCGTGTTTGGTC-GTCTAAATGTCTAAAAAGA---ATCAATGCT--TCT----------AACAACATAA------------CTGATAATGTATC---TA---A-T--A---GATGT------AACT-GA-GTTGTATTATTTTGA-TT----G-A-CGTTTTC---AA-A-CCA--CATTAT---A-TGCATTTTTATCACAGGTTTTGTT--TTTAAATATCGAATTCAACTT--TGATAAAA
gi|16 : tatttatatttttatttgggtttacattcctgttacaacgaTCTGC--AAATGAAAC-AATT-TT-TCAAACAGTGGTAA--TATTATTCAAAGTTGCTGGGTGGTGGGGTGCTCCAACGTACATTCAATGGCGATACAC-------GTGGC----TTTTCACTGCTAACCATAATGGGTATTGTTTCCAGCTG-GTTGTATGAATGTGTAACAGTT-TGCTCCGAACTT-TAGAAAAGCCAGA-CC-TCTTGTTCTGATAATTGATGAACATG
gi|17 : TTCGTTTGATGCGGAAACGT-AAGT-A-AAAGGGAT-----TTT-ACCATTGGTGTGAGTCTCTTA---AA-AGCACACTTCGTTTTAA
gi|17 : tcatatcttatatatatcttaatatattcataatgcaatca-GTCTTAATAGCTATACAGATT-Atannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcttaatagctatacagatta
gi|19 : tcatatcttatatatatcttaatatattcataatgcaatcattcgtttgatgcggaaacgtaagtaaaagggattttaccattggtgtgagtctcttaaaagcacacttcgttttaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAATACGTTCTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTTAATGACTATACAGATT-ACCAGTCCAGGTCT-ATT-CATTCATCATCAAAAG-------------TACAGCATAAC---AA---A
gi|2 : TTCGTTTGATGCGGAAACGT-AAGT-G-AAGTGAAAGGAAATTG-AACATTGGTGTTAGTCTCTTA---AAGGGCACAACACGTTTTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATCTTAATGGTTATACAGATT-ACCAGTCCTCGTCT-GTT-CATTGATCATCTAGAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TA-TATGTATTAATTTTA-TT----G-T-TG-TTTCA-ATA-A-AAA--CATAAT---ATTGCATTTCCATTAGA--TTT--CT--TTTAAATATTGAATTTAACGT--TAATACAACTAAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGTAGATTTGACCAAAA-CCATTTGGAAGTGTATTTAATCGGAAGTAGTTACAGCTGACCACCTGACTGCCCACTTGTGTATTTCTGC--AAATGAAAC-ATTT-TT-AAAAACAATAGTAA--TGTTATTTAAAATGGCTGGGTGGAAGGATGCTCCATCGTACTTTCAATGCCGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCCAGCTC-ATTTTATGAATATGTAACAGTT-TGTTCCACACTT-AAGAAAAGCCAGA-CC-TATTGTTAAAATAATTGACAACCATGA
gi|21 : TTTGATGTAGAAACATAAAGTAA-AAATGGGA-----TTTGAACATTGCTGTATGTCCCT
gi|25 : tccccataatgtcatgtgttcatagatgtatccaatgaCTTAATGTTTTGGAAAT--GACTATT--TCTGCGAAAGGGTGATTTTACCAAAA-CTGCTTGGAAGTGTATTT-ATCGGAAGTAG
gi|27 : TTCGATGCGTAAACAT-AACT-TTAAAT--AT-----TTA-AACATTGCTGTGTGTCCCTT
gi|28 : ataagttcaaaaattaaTTCGGTTGATGCGGAAACGT-TAGT-A-AAcagt
gi|29 : atttatattttcatttgggtttacattcctggtataacgaAACGTATAATAGTT-TGCCCTGAACTT-CAGAAAAGCCAGA-CT-TGTTGTTGTAATAATTGAAAACCATGtt
gi|3 : TTGTTTGATGCGGAAACGT-AAGT-A-GAATGGAC-----TTT-AACAGTGGTGTGAATCT--TA--------TACAATACGTTTTAAGAAGGAT-GGTAGCGCAGTTGATCGAGTGTTGACCGCTTACTCCAAACCTTGCGGGTTTAGTC-GTCTTAATGGCCATACAGATT-ACAACTTCTCGCCTCTTT-CATTCATCATCAAAAGAGTCAATGAGACCTACAACATAAC---TA---ATT--T---TGTGTCTCTGAAATT-TA-TATGTATTATCTTAA-TT----G-C-TG-TTAAG--AA-A-AAA--CTTAAA---A-TGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATGCAAGTTAATGATTTGGAAAG--AA--A-----CCGC-----------TTGA---------------AAGTGTATCTAATCGGAAGAAGT-ATAGCTGACAACGTGACTGACCACTTGTGCGTTTCTGC--AAATGAAACAA-TT-TT-ACAAACAATAGTAA--TATTATTCAAAAGGGCTGAGTTGAGGGGTGCTCCATCGTTCGCTCAATGACGATATACCTGGATCGAGGC----GTTTCACTGCTAACTATAGTGGGTATTATTTCAAGCTC-ATTTTATGCATGTGTAATCGTT-TGCTCCGAACTT-CAAAAAAGCCAGG-CC-TCTGGTTCTGATAATTGACAACCATGA
gi|30 : gtataaatatcttaataaagtaatacactcataatgcaatgaaTGTAACAGTT-TTGTCCAAATTT-CAGAAAAGCAAAA-CC-TGTGGTTCTGATAATTGACAACCATG
gi|4 : tAACGC-AAGT-A-AAATTGAA-----TTT-AACATTGGCGTGAGTCTATTA---GAGAGCACCATACGTTCTAAGAAGAAT-G-TACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNTTAATGGCCATACAGATG-ACCAATCCTCGTCT-TTT-CATTCATCATCAAAAGAGTCAATGTGCCTTACAACA--ACATGTA---ATT--A---TGTGTCTCCGAAACA-TA-TATGAATTATT--AA------------------A-AAA-ATAAA--AATAAATAAAGTACATTTCCATCATA--ATT--CTATTTTAGATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--TA--ATTAATCTGCGGAAGTTTGATTTGACCAAAA-CCGCGTGGAAGTGTATTTAATCGGAAGTATTAATAGCTGACCACGTGACGGCCCACTTGTGAGTTTCTGC--AAATGAAAC-A-GTATT-ACAAACAATACTAA--TATTATT----GGGGATGGGTAGAGGGGTGCTCCACTGTACGTCCAATGACGATATACCTGGATCGTGAC----TTTTCACTGCTAATCATAGT---T-TTGTTTCAAGCTC-AGTTTATGAATGTGTAACAGTT-TGCTCCGAACTT----------CAGA-CT-TGCTGTTCTAGTAACTGACAACCATG
gi|5 : ctagtattaatatcttcatataataatacatccat-GTCTTAATGGCCATACAGATT-GCCAGTCCTCATCT-GTT-CATTCATCA---AAACAGTCAATGAACCTTACAACACAAC---TA---ATT--A---TGTGTCTCTCAAACT-TA-TATGTATTCTTTTAA-TT----G-C-TG-TTTTG-AAA-A-AAAATCTT-AA---AGTGCATTTCCATCATA--ATT--CT--TTCAAATATTGAATTTAACTT--TGATAAAACGTAATGTTTTGGAAAG--GA--AT----------AAAGGTGATTTGACC-AAA-CCGCTTG---TTGTATTTAATCTATAATATTGACAGCTGACCACGTGACTGCCAAC--------TTCTGCAGAAAAAAAAC---TT-TT-ACAAACAATTGTAA--TATTATTTTATGGGACTGGGTGGAAGGGTGCTCCATCGTAAGTTCAATGACGATAAACATGGATCGTGGC----TTTT--CTGCTAATCATAGCGGGTATTGTTTCAGGCTCAATTTTATGAATGTGTATCA-TT-TGCTCCAAACTT-CAGAAAAGCCAGA-C----TTGTTCTAATAATTGACAACCAT
gi|6 : aacgcaatgcttcgttcaatgcggaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGAAACGT-AGGT-A-AAAT-----------T-AACATTGGTGTAAGTCTCTTA---AAGAGCACAATGCGTTTTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTTTTAATGACCGTACATATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAACAGTCAATGAGCCTTACAACGTAA-----------T--A---TGTGTCTCTGAA--TGTA-TGTGTATTATTTTAG-TT----G-T-TA-TTTCG-AAA-A-ATA--CTTAAA---A-TGCATTTCCATCAGA--TTT--GT--TTTAAATATTGAATTTAACTTAATGAAACAACTTAATGTTTTGGAAAG--GA--ATTGATCTGCGAAATGTTGATTTGACCAAAA-CGGTTTGAAAGTGTATTTAATCGGAAGTAGTAGCAGCTGACCACCTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TA-ACAAACAATAGTAA--TATTATTTGAAAGGGTTTGGTGGAGGGTTGCTTCACCGTACGTTCAATGACGATATACCTGGATCCTTGC----TTTTCACTGATAATCATTGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACTGTT-TGCTCCGAACTT-TAGAAAAGTCACA-CCTTGTTGTTATAATAATTGACAACCATGa
gi|7 : TTTGTTTGATGCGGAAACGT-AAGT-A-GAATGGAT-----TTC-AACNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------GTCTTAATTGCCATACAGATT-ACCAGTCCTCGCCT-CTTTCATTCATCATCAAAAGAGTCAATGAGACCTAAAACATAAC---AT---ATT------TGTGTCTCTGAAATG-TA-TATGTATTATCTTAA-TT----G-T-TG-TTAAG-AGA-A-AA---CGTAAA---A-TGCGTTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAAGTTAATGATTTGGAAA---------TAAACCGCTAGAAAGTG--------------------------TATCTAATCGGAAGAAGTAACAGCTGACCACGTGACTGACCACTTTTGCGTTTCTG----------------------CAAACAATAGTAA--TATTATTAAAAAGGATT-----GAGGGGTGCT-----G-------AATGACGATATACCTTGATCGAAGC----TTTTTACTGTTAACTATAGTGGGTATTATTTCAAGCTA-ATTTTATGAATGTATAATACTT-TGCTCCGAACTT-CAGAAAAGCTAGG-CC-TCTGGTTCTGATAATTGACAACCAT
gi|8 : gtataaatatcttgatatagtaatacattcataatgcgctgaTGATGTGAGTCTCTTATGAAAGAGCACAATACGTTCTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTTAATGGACATAGAGATTTGTCCGTCGTCGATT-GTT-CATTTATCATCAAAAGAGTCAATGAACCTTACAACATAAC---CA---ATT--G---TGTGTCTTTGAAATG-TA-TATGTATTATTCTAA-TT----G-C-TG-TTTCG-AAATA-AAA--GCTTAA---AGTGCCTTTTCATTATA--CTT--CT--TTTAAATATTGAATTAAGTAT--TGATACAACTTACTGTTTCGGAAAG--GA--ATACATCTGCGAAAAGGTAACTTTACCAAAA-CCGCTTGGAAGTGTATTTAATTGGAAGCAGTAACCGGTGATCACGTGACTGACCACTTGCGTGTGTCTGC--AAAAGAAAC-A-TT-TTCACAAACAATAATAA--TATTATTTAATGGGGCTGGGTGGAAGGGTGCTCCACTGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAATCATAGTGGGTATTGATTAAAGCTT-ATTTTATGAATGTGTAACAGTT-TACTCCGACCTT-CAGAAAAATCATA-C----TTGTTATAATAATTGAAAACCATGa
gi|9 : AGTCTTTTA---AAAAGCACACTACGTTTTTAGAAGAGT-G-TGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTTAATGGCCATACAGAT--------CCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAAATAGCCTGACAACATTAC---TA---CTT--A---TGTGTCTCTGAAACT-TA-T--GTATAATTTTAA-TT----G-C-TG-TTTCT-AAA-A-AAA--CTTAAT---C-TGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTTAGTT--TGATACAACTTAATGTTTTGGAAAGAGGA--ATTAATCTGCGAAAGGATGATTTCACCAAAA-CCGCTTGTGAATGTATTTAACCGGAAGTTATAACAGCTGACCACGTAACTGCCCACTTATGTGTTTCTTC--AAATGAAAC-ATTT-TT-AAAAATAATACTAATTTATGATTCAAAGGGGCTGGGTGGAGGGGTGCTCAACCGTACGTTGAATGACGATATACCTGGATCTTGGCTCAGTTTTC-CTGATAACCATAATGTGTATTGTATCAAAGTC-ATTTTATGAATGTGTAA-ATTTGTGCTTCGAACTT-CAGAAAAGTCCGA-CC-TGTTG---TAATAATTGACAACCAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTAAACACTGGTAATACATTCTGATTATGATATTACAGAAAATAATACTTTGAAGTCGATATATTCATATGGTTATACGTTCATAGGTGTAAAACTTAATTTGATTAGTGAACATACATTAAATGATGTTAAACATTGCTGCATGTCCCTTTA
Unaligned ( gi|20 ): ATATTCGTATGGTTATAACTTTCATAGGTATAAAAATAGAATTGATACATTATTTGATAAAAGCAATTTAAACATTGCCTTTTATCCCTTTAACC
Unaligned ( gi|22 ): ATGATTATACGTCGATAGGTGTAAAACGCGAACATATATTTTATACCAAATTGATTTCAACATTTAAACATTATTACGTGTTCCTTTTA
Unaligned ( gi|23 ): TATAGTTAAACGTACATTGTTGTAAAAAGTTGATTTGATTCATGAACATGAGTGAAAATGCCATTCAACATTTGTGCATGTCCCTTTA
Unaligned ( gi|24 ): TTGATATCTTTACATGGCCACACATTCATAGTTGTATATATTAATTTGAAGAAACATATAATCTCAACATTGCTGTGTGCCCTTTTA
Unaligned ( gi|26 ): TTTCAGATAACAATATTTGGAGATCAATATATCCACAAGGTCATACATCCATAGGTGTAAAGTTTTACTTGAT
Alignments
lowQualScore : 111111 11111 111
lowQualScore : 3 444 2 000000 3 555 1 3 4 1 22 1 0 0 22 0 66666666 5 33 2 444 444 555555 2 2 1 2 5555 222 2 2 2 5 33 1 3 66666 444 33 33 33 0 33 33 0 2 0 44 333 3 3 44 2 22 0 7777 3 3 3 3 55 0
lowQualScore : . ... . ...... . ... . . . . .. . . . .. . ........ . .. . ... ... ...... . . . . .... ... . . . . .. . . ..... ... .. .. .. . .. .. . . . .. ... . . .. . .. . .... . . . . .. .
lowQualScore : 1 333 5 555555 3 444 7 1 5 0 00 0 4 4 00 4 11111111 0 11 7 444 444 333333 7 7 3 7 7777 999 7 7 7 3 77 0 2 66666 333 77 77 77 5 77 77 1 7 5 22 888 3 3 66 2 55 5 7777 6 1 1 1 77 8
consensus : TTCGTTTGATGCGGAAACGT-AAGT-A-AAATGGAN-----TTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GGTAGCGCNGTTGANNGAGTGNTGACCGCTTACTCCAAANNTTGCGGGTTTNGTC-GTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TA-TATGTATTATTTTAA-TT----G-C-TG-TTTCG-AAA-A-AAA--CNTAAA---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
Reference ( family-493 ) : TTCGTTTGATGCGGAAACGT-AAGT-A-AAATGGAN-----TTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GGTAGCGCNGTTGANNGAGTGNTGACCGCTTACTCCAAANNTTGCGGGTTTNGTC-GTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TA-TATGTATTATTTTAA-TT----G-C-TG-TTTCG-AAA-A-AAA--CNTAAA---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
gi|1 : TTCGTTTGATGCGGAAACGT-AAGT-T-GAATTGAA-----TTT-AACATTGGTGTGAGTTTCTTA---AAGAGCACAGTACGTTTTTAGATGGAT-GGTAACGCAGTTGAAAGAGTGGTCACCGCTTACTCCAAAGATTACGGGTTTTATC-ATCATGATGACCATACAGATTTACCAGTCCGCGTCT-GTT-CATTCAACATCAAAAGAGTCAATGAGCCTTACAAC-TACC---TATGAATTCAA---TGT--------AACT-TA-TATGTATTATTTTAA-TT----G-C-TG-TATCG-AAA-A-AAA--CTTAAA----GTGCATTTCCATCATA--TTG--CT--TTTAAATATTGAACTTAACTT--TTTTACACATTAATGTTTTGGAATG--AA--ATGAATCTGCGAAAGGGTGGTTTGACCAAAA-CAGGTTGAAAGTGTATTTAATCGGAAGTAGTAACAGCTGACAACAGGACTGCATACTTGTGTGTATCTAC--AAATGAAAC-ATTT-TT-ACAAACATAAGTAA--TATCATCTAATTGGGCTGGGAGGAGGGGTGCTCCGCCGTACGCTAAATGACGATATACATGGATCGTAAC----TTTTCACTGTTTATCATAGTGGGTATTGCTTCAAGATC-ATTTTATGAATGTGTTACAGTT-TGCTCCGAACTTATAAAAAAGCCAGATCT-TGTTCTTCTTATAACAGACAACCA
gi|10 : ttaatatattcatataataatacatttatagtggaatgaTCAATGAGCTTTACAACGTAAT---TA---ATT--AACATGTGTCTCTGATACT-TA-TGTGTATTATTTCAA-TT----TTC-TG-TTTCG-AAA-A-CAA--AATGAA---AGTGCATTTCCATCATA--ATT--CT--TTTAGATATTGAATTTAACTT--TGATGTAACTTAATGTTTTGGAAAG--GA--AATAATCTACAAAAGGGTGATTTGATAAAAT-CCGCTTGGAAGTGTATTTAATCGGAAGAAGTAACAGCTGACCACGGGACTGCTCACTAGTGTGCTTC--------------------------AACACTA--AA--TATTACTCAGTTGGGCTTGGTGGAAGAGTGCTCCACCGTACGTTCAATGACGATATACTTTGTTCGTGGC----TTTTGACTTCTAATCATAGTAGGTATTGTTTCGCGCTC-ATTTTATGAATGTGTATCAGTT-TGCTCTGACCTT-CAGAAAAAACAAA-AT-TGTTGTTCTAATAATTGACACCCATGc
gi|11 : ataTTCGTTTAATGCGGAAACAT-ACGT-A-GAATGGAT-----TTT-AACATTGGTGTGAGTC----------------AACACGTTTTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTTAATAGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAACGAGTCCATTAGCATTACAATATAAC---TC---AGG--A---TGTGTCTCTGAAACT-TA-AATGTATTATTTTAAATT----G-T-TG-TTTCGAAAA-A-AAA--CTTAAA---A-TGTATTTCCATCATA--TTT--CT--TTCAAATATTAAATTTAATTT--TGATATAACTTAATGTTTCGGAAAA--GA--ATTAATCTGCGAAAGGGTGATTTGATCAAAA-CCGCTTGGAAGTGTA-TTAATCGGAAGTAGTAACAGC
gi|12 : tagtatttcaagtagtaaaacattcaaaatgcaacgaTTCGTTTGATGCGGAAACGT-AAGT-T-AAATGGAA-----TTT-AACATTGGTGCAAGTCTCTTA---AAGAG--------ATTCTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTTTTAATGACCATATAAATT-ACCCGTCCGCGTCT-ATT-CATTCATCATCAAAAGAGTCAATGAACCTTACAGCATAAC---TG---ATT--A---TGTGTCTATGATACG-TG-TATGTATTATTTTAA-TTCAACG-CATG-TTTCG-AAC-A-AAA--TATTAA---AATAT-TTTCCATCACA--ATT--CT--TTTAAATATTAAATATAACTT--TGATATATTTTAATGCTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATT
gi|13 : ctagtactaatatattcatatagtaatacattcataatgcaatgaTTGGCGTTAGTCTCTTA---AAGAGCAATAGACATTCTAAGAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTCAATGGCCATACAGATT-ACCAGTCCTTGTCT-GTT-CA----------AAAGAGTAAATGAGCCTTACAACCTAAC---TA---ATC--A---TGTGTCTCTGAAACT-TA-T--GTATTATTTTAA-TT----G-C-TG-TTCCG-AAA-A-AAA--CATTAA---AGTGAATTTCTATCACA--ATT--CT--TCTAAATATTAAATTTAACTT--TGAAACAA---ACTGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGA-TGGACCAAAACCCGCTTGGAAGTGTATTTAGTCGGAAGTAGTAACAGCTGACCACGTGACTGTCTAC----GTGTTTTTAC---AATAAAAC-A-T
gi|14 : TCTTACTGGCCATACAGATT-ACCAGCCCTTGTCA-GTA-TATTCATCATTAAAAGAGTCAATGAGCCTTACAACATAAC---TA---AAT--A---TGTATCTCTGTAACT-TAATA-GTATAATTTTAA-TT----G-C-TA-ATTCG-AAA-ACAAA--ATTGAA---A-TGCATTTCCTTCATA--TTT--CT--TTTAAACGTTGAAATTAACTT--TGATGCAATTTA-TGTTTTGGAAAG--GA--ATTATTCTGCGATCGGGTGATTTGACCAAAA-CCGTTTGGAAGTGTATTGAATCGGAAGTAGTAATAGCTGACCACATGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGCAA---ATCTTTTCAAAGGGCTGTGTGGAGGTGTGCTTCATCG
gi|15 : TTCGTTTGATGCGGAAACGT-TAGT-A-AATTGGAT-----TTT-A-CACTGGCGTGAGTCTCTTC---AGTAGCACAAAACGTTTTAAGAAGGGT-GGTAGCAACGTTGATAAAGTGTTGGTCATTTACTCAAAATGTTGCGTGTTTGGTC-GTCTAAATGTCTAAAAAGA---ATCAATGCT--TCT----------AACAACATAA------------CTGATAATGTATC---TA---A-T--A---GATGT------AACT-GA-GTTGTATTATTTTGA-TT----G-A-CGTTTTC---AA-A-CCA--CATTAT---A-TGCATTTTTATCACAGGTTTTGTT--TTTAAATATCGAATTCAACTT--TGATAAAA
gi|16 : tatttatatttttatttgggtttacattcctgttacaacgaTCTGC--AAATGAAAC-AATT-TT-TCAAACAGTGGTAA--TATTATTCAAAGTTGCTGGGTGGTGGGGTGCTCCAACGTACATTCAATGGCGATACAC-------GTGGC----TTTTCACTGCTAACCATAATGGGTATTGTTTCCAGCTG-GTTGTATGAATGTGTAACAGTT-TGCTCCGAACTT-TAGAAAAGCCAGA-CC-TCTTGTTCTGATAATTGATGAACATG
gi|17 : TTCGTTTGATGCGGAAACGT-AAGT-A-AAAGGGAT-----TTT-ACCATTGGTGTGAGTCTCTTA---AA-AGCACACTTCGTTTTAA
gi|17 : tcatatcttatatatatcttaatatattcataatgcaatca-GTCTTAATAGCTATACAGATT-Atannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcttaatagctatacagatta
gi|19 : tcatatcttatatatatcttaatatattcataatgcaatcattcgtttgatgcggaaacgtaagtaaaagggattttaccattggtgtgagtctcttaaaagcacacttcgttttaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAATACGTTCTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTTAATGACTATACAGATT-ACCAGTCCAGGTCT-ATT-CATTCATCATCAAAAG-------------TACAGCATAAC---AA---A
gi|2 : TTCGTTTGATGCGGAAACGT-AAGT-G-AAGTGAAAGGAAATTG-AACATTGGTGTTAGTCTCTTA---AAGGGCACAACACGTTTTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATCTTAATGGTTATACAGATT-ACCAGTCCTCGTCT-GTT-CATTGATCATCTAGAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TA-TATGTATTAATTTTA-TT----G-T-TG-TTTCA-ATA-A-AAA--CATAAT---ATTGCATTTCCATTAGA--TTT--CT--TTTAAATATTGAATTTAACGT--TAATACAACTAAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGTAGATTTGACCAAAA-CCATTTGGAAGTGTATTTAATCGGAAGTAGTTACAGCTGACCACCTGACTGCCCACTTGTGTATTTCTGC--AAATGAAAC-ATTT-TT-AAAAACAATAGTAA--TGTTATTTAAAATGGCTGGGTGGAAGGATGCTCCATCGTACTTTCAATGCCGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCCAGCTC-ATTTTATGAATATGTAACAGTT-TGTTCCACACTT-AAGAAAAGCCAGA-CC-TATTGTTAAAATAATTGACAACCATGA
gi|21 : TTTGATGTAGAAACATAAAGTAA-AAATGGGA-----TTTGAACATTGCTGTATGTCCCT
gi|25 : tccccataatgtcatgtgttcatagatgtatccaatgaCTTAATGTTTTGGAAAT--GACTATT--TCTGCGAAAGGGTGATTTTACCAAAA-CTGCTTGGAAGTGTATTT-ATCGGAAGTAG
gi|27 : TTCGATGCGTAAACAT-AACT-TTAAAT--AT-----TTA-AACATTGCTGTGTGTCCCTT
gi|28 : ataagttcaaaaattaaTTCGGTTGATGCGGAAACGT-TAGT-A-AAcagt
gi|29 : atttatattttcatttgggtttacattcctggtataacgaAACGTATAATAGTT-TGCCCTGAACTT-CAGAAAAGCCAGA-CT-TGTTGTTGTAATAATTGAAAACCATGtt
gi|3 : TTGTTTGATGCGGAAACGT-AAGT-A-GAATGGAC-----TTT-AACAGTGGTGTGAATCT--TA--------TACAATACGTTTTAAGAAGGAT-GGTAGCGCAGTTGATCGAGTGTTGACCGCTTACTCCAAACCTTGCGGGTTTAGTC-GTCTTAATGGCCATACAGATT-ACAACTTCTCGCCTCTTT-CATTCATCATCAAAAGAGTCAATGAGACCTACAACATAAC---TA---ATT--T---TGTGTCTCTGAAATT-TA-TATGTATTATCTTAA-TT----G-C-TG-TTAAG--AA-A-AAA--CTTAAA---A-TGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATGCAAGTTAATGATTTGGAAAG--AA--A-----CCGC-----------TTGA---------------AAGTGTATCTAATCGGAAGAAGT-ATAGCTGACAACGTGACTGACCACTTGTGCGTTTCTGC--AAATGAAACAA-TT-TT-ACAAACAATAGTAA--TATTATTCAAAAGGGCTGAGTTGAGGGGTGCTCCATCGTTCGCTCAATGACGATATACCTGGATCGAGGC----GTTTCACTGCTAACTATAGTGGGTATTATTTCAAGCTC-ATTTTATGCATGTGTAATCGTT-TGCTCCGAACTT-CAAAAAAGCCAGG-CC-TCTGGTTCTGATAATTGACAACCATGA
gi|30 : gtataaatatcttaataaagtaatacactcataatgcaatgaaTGTAACAGTT-TTGTCCAAATTT-CAGAAAAGCAAAA-CC-TGTGGTTCTGATAATTGACAACCATG
gi|4 : tAACGC-AAGT-A-AAATTGAA-----TTT-AACATTGGCGTGAGTCTATTA---GAGAGCACCATACGTTCTAAGAAGAAT-G-TACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNTTAATGGCCATACAGATG-ACCAATCCTCGTCT-TTT-CATTCATCATCAAAAGAGTCAATGTGCCTTACAACA--ACATGTA---ATT--A---TGTGTCTCCGAAACA-TA-TATGAATTATT--AA------------------A-AAA-ATAAA--AATAAATAAAGTACATTTCCATCATA--ATT--CTATTTTAGATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--TA--ATTAATCTGCGGAAGTTTGATTTGACCAAAA-CCGCGTGGAAGTGTATTTAATCGGAAGTATTAATAGCTGACCACGTGACGGCCCACTTGTGAGTTTCTGC--AAATGAAAC-A-GTATT-ACAAACAATACTAA--TATTATT----GGGGATGGGTAGAGGGGTGCTCCACTGTACGTCCAATGACGATATACCTGGATCGTGAC----TTTTCACTGCTAATCATAGT---T-TTGTTTCAAGCTC-AGTTTATGAATGTGTAACAGTT-TGCTCCGAACTT----------CAGA-CT-TGCTGTTCTAGTAACTGACAACCATG
gi|5 : ctagtattaatatcttcatataataatacatccat-GTCTTAATGGCCATACAGATT-GCCAGTCCTCATCT-GTT-CATTCATCA---AAACAGTCAATGAACCTTACAACACAAC---TA---ATT--A---TGTGTCTCTCAAACT-TA-TATGTATTCTTTTAA-TT----G-C-TG-TTTTG-AAA-A-AAAATCTT-AA---AGTGCATTTCCATCATA--ATT--CT--TTCAAATATTGAATTTAACTT--TGATAAAACGTAATGTTTTGGAAAG--GA--AT----------AAAGGTGATTTGACC-AAA-CCGCTTG---TTGTATTTAATCTATAATATTGACAGCTGACCACGTGACTGCCAAC--------TTCTGCAGAAAAAAAAC---TT-TT-ACAAACAATTGTAA--TATTATTTTATGGGACTGGGTGGAAGGGTGCTCCATCGTAAGTTCAATGACGATAAACATGGATCGTGGC----TTTT--CTGCTAATCATAGCGGGTATTGTTTCAGGCTCAATTTTATGAATGTGTATCA-TT-TGCTCCAAACTT-CAGAAAAGCCAGA-C----TTGTTCTAATAATTGACAACCAT
gi|6 : aacgcaatgcttcgttcaatgcggaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGAAACGT-AGGT-A-AAAT-----------T-AACATTGGTGTAAGTCTCTTA---AAGAGCACAATGCGTTTTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTTTTAATGACCGTACATATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAACAGTCAATGAGCCTTACAACGTAA-----------T--A---TGTGTCTCTGAA--TGTA-TGTGTATTATTTTAG-TT----G-T-TA-TTTCG-AAA-A-ATA--CTTAAA---A-TGCATTTCCATCAGA--TTT--GT--TTTAAATATTGAATTTAACTTAATGAAACAACTTAATGTTTTGGAAAG--GA--ATTGATCTGCGAAATGTTGATTTGACCAAAA-CGGTTTGAAAGTGTATTTAATCGGAAGTAGTAGCAGCTGACCACCTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TA-ACAAACAATAGTAA--TATTATTTGAAAGGGTTTGGTGGAGGGTTGCTTCACCGTACGTTCAATGACGATATACCTGGATCCTTGC----TTTTCACTGATAATCATTGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACTGTT-TGCTCCGAACTT-TAGAAAAGTCACA-CCTTGTTGTTATAATAATTGACAACCATGa
gi|7 : TTTGTTTGATGCGGAAACGT-AAGT-A-GAATGGAT-----TTC-AACNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------GTCTTAATTGCCATACAGATT-ACCAGTCCTCGCCT-CTTTCATTCATCATCAAAAGAGTCAATGAGACCTAAAACATAAC---AT---ATT------TGTGTCTCTGAAATG-TA-TATGTATTATCTTAA-TT----G-T-TG-TTAAG-AGA-A-AA---CGTAAA---A-TGCGTTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAAGTTAATGATTTGGAAA---------TAAACCGCTAGAAAGTG--------------------------TATCTAATCGGAAGAAGTAACAGCTGACCACGTGACTGACCACTTTTGCGTTTCTG----------------------CAAACAATAGTAA--TATTATTAAAAAGGATT-----GAGGGGTGCT-----G-------AATGACGATATACCTTGATCGAAGC----TTTTTACTGTTAACTATAGTGGGTATTATTTCAAGCTA-ATTTTATGAATGTATAATACTT-TGCTCCGAACTT-CAGAAAAGCTAGG-CC-TCTGGTTCTGATAATTGACAACCAT
gi|8 : gtataaatatcttgatatagtaatacattcataatgcgctgaTGATGTGAGTCTCTTATGAAAGAGCACAATACGTTCTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTTAATGGACATAGAGATTTGTCCGTCGTCGATT-GTT-CATTTATCATCAAAAGAGTCAATGAACCTTACAACATAAC---CA---ATT--G---TGTGTCTTTGAAATG-TA-TATGTATTATTCTAA-TT----G-C-TG-TTTCG-AAATA-AAA--GCTTAA---AGTGCCTTTTCATTATA--CTT--CT--TTTAAATATTGAATTAAGTAT--TGATACAACTTACTGTTTCGGAAAG--GA--ATACATCTGCGAAAAGGTAACTTTACCAAAA-CCGCTTGGAAGTGTATTTAATTGGAAGCAGTAACCGGTGATCACGTGACTGACCACTTGCGTGTGTCTGC--AAAAGAAAC-A-TT-TTCACAAACAATAATAA--TATTATTTAATGGGGCTGGGTGGAAGGGTGCTCCACTGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAATCATAGTGGGTATTGATTAAAGCTT-ATTTTATGAATGTGTAACAGTT-TACTCCGACCTT-CAGAAAAATCATA-C----TTGTTATAATAATTGAAAACCATGa
gi|9 : AGTCTTTTA---AAAAGCACACTACGTTTTTAGAAGAGT-G-TGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTTAATGGCCATACAGAT--------CCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAAATAGCCTGACAACATTAC---TA---CTT--A---TGTGTCTCTGAAACT-TA-T--GTATAATTTTAA-TT----G-C-TG-TTTCT-AAA-A-AAA--CTTAAT---C-TGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTTAGTT--TGATACAACTTAATGTTTTGGAAAGAGGA--ATTAATCTGCGAAAGGATGATTTCACCAAAA-CCGCTTGTGAATGTATTTAACCGGAAGTTATAACAGCTGACCACGTAACTGCCCACTTATGTGTTTCTTC--AAATGAAAC-ATTT-TT-AAAAATAATACTAATTTATGATTCAAAGGGGCTGGGTGGAGGGGTGCTCAACCGTACGTTGAATGACGATATACCTGGATCTTGGCTCAGTTTTC-CTGATAACCATAATGTGTATTGTATCAAAGTC-ATTTTATGAATGTGTAA-ATTTGTGCTTCGAACTT-CAGAAAAGTCCGA-CC-TGTTG---TAATAATTGACAACCAT
blockSeqs : A AA G AGGAAA G TGA G T N N NN N NN NNNNNNNT T CT T ATG . AACA G A G A CAAC TC T A T C AT A G TAAAG GGT TG AT AA AG CT C AG AA A C TT C TT TCAG A G . . CT
blockSeqs : . TT G T . . G . N N NN N NN NNNNNNN . G . . . A . . A . . CA . . . T . T A AG A . . . . . . . AT . . . T AA . . . . . T
blockSeqs : . A G A . . T . N N NN N NN NNNNNNN . A . . . A . . A . . T . . . . . A T AA T . . . . . . . AA . . . C AG . . . . . C
blockSeqs : . T G T . . G . G C TA T TG NNNNNNN . G . . . A . . A . . C . . . . . A T AG A . . . . . . . AT . . . T AA . . . . . C
blockSeqs : . A G T . . G . N N NN N NN TTTGGTC . G . . . A . . T . . C . . . . . T G AT A . . . . . . . A . . . C AA . . . . . T
blockSeqs : . A G A . . G . N N NN N NN NNNNNNN . A . . . A . . A . . A . . . . . A T AG T . . . . . . . A . . . T TG . . . . . C
blockSeqs : . G G T . . N . G A TC T CC NNNNNNN . G . . . A . . A . . T . . . . . A A AG T . . . . . . . A . . . T AA . . . . . C
blockSeqs : . A T C . . G . N N NN N NN TTTAGTC . T . . . T . . A . . C . . . . . T A A T . . . . . . . A . . . A AA . . . . . T
blockSeqs : . A G A . . A . N N NN N NN NNNNNNN . G . . . A . . A . . C . . . . . A A A A . . . . . . . A . . . T TG . . . . . C
blockSeqs : . A . T . . . . N N NN N NN NNNNNNN . G . . . A . . G . . T . . . . . T A A A . . . . . . . . . . . C AG . . . . . C
blockSeqs : . A . . . . . . . N NN N NN NNNNNNN . C . . . A . . A . . T . . . . . T A A T . . . . . . . . . . . . G . . . .
blockSeqs : . A . . . . N NN N NN . . G . . . G . . A . . C . . . . . G T A T . . . . . . . . . . . .
blockSeqs : . G . . . A . . . . . C . . . . . C A A C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . C T . . . . . .
blockSeqs : . . .
blockSeqCons : *** A***** A**
originalCons : TTCGTTTGATGCGGAAACGT-AAGT-A-AAATGGAN-----TTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GGTAGCGCNGTTGANNGAGTGNTGACCGCTTACTCCAAANNTTGCGGGTTTNGTC-GTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TA-TATGTATTATTTTAA-TT----G-C-TG-TTTCG-AAA-A-AAA--CNTAAA---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
finalCons : TTCGTTTGATGCGGAAACGT-AAGT-A-AAATGGAN-----TTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GGTAGCGCNGTTGANNGAGTGNTGACCGCTTACTCCAAANNTTGCGGGTTTNGTC-GTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATTA-----TGTGTCTCTGAAACT-TA-TATGTATTATTTTAA-TT----G-C-TG-TTTCG-AAA-A-AAA--CNTAAA---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAACA--TT-TT-ACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTAAACACTGGTAATACATTCTGATTATGATATTACAGAAAATAATACTTTGAAGTCGATATATTCATATGGTTATACGTTCATAGGTGTAAAACTTAATTTGATTAGTGAACATACATTAAATGATGTTAAACATTGCTGCATGTCCCTTTA
Unaligned ( gi|20 ): ATATTCGTATGGTTATAACTTTCATAGGTATAAAAATAGAATTGATACATTATTTGATAAAAGCAATTTAAACATTGCCTTTTATCCCTTTAACC
Unaligned ( gi|22 ): ATGATTATACGTCGATAGGTGTAAAACGCGAACATATATTTTATACCAAATTGATTTCAACATTTAAACATTATTACGTGTTCCTTTTA
Unaligned ( gi|23 ): TATAGTTAAACGTACATTGTTGTAAAAAGTTGATTTGATTCATGAACATGAGTGAAAATGCCATTCAACATTTGTGCATGTCCCTTTA
Unaligned ( gi|24 ): TTGATATCTTTACATGGCCACACATTCATAGTTGTATATATTAATTTGAAGAAACATATAATCTCAACATTGCTGTGTGCCCTTTTA
Unaligned ( gi|26 ): TTTCAGATAACAATATTTGGAGATCAATATATCCACAAGGTCATACATCCATAGGTGTAAAGTTTTACTTGAT
Alignments
lowQualScore : 111111 11111 111
lowQualScore : 3 444 2 000000 3 555 1 3 4 1 22 1 0 0 22 0 66666666 5 33 2 444 444 555555 2 2 1 2 5555 222 2 2 2 5 33 1 3 66666 444 33 33 33 0 33 33 0 2 0 44 333 3 3 44 2 22 0 7777 3 3 3 3 55 0
lowQualScore : . ... . ...... . ... . . . . .. . . . .. . ........ . .. . ... ... ...... . . . . .... ... . . . . .. . . ..... ... .. .. .. . .. .. . . . .. ... . . .. . .. . .... . . . . .. .
lowQualScore : 1 333 5 555555 3 444 7 1 5 0 00 0 4 4 00 4 11111111 0 11 7 444 444 333333 7 7 3 7 7777 999 7 7 7 3 77 0 2 66666 333 77 77 77 5 77 77 1 7 5 22 888 3 3 66 2 55 5 7777 6 1 1 1 77 8
consensus : TTCGTTTGATGCGGAAACGT-AAGT-A-AAATGGAN-----TTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GGTAGCGCNGTTGANNGAGTGNTGACCGCTTACTCCAAANNTTGCGGGTTTNGTC-GTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TA-TATGTATTATTTTAA-TT----G-C-TG-TTTCG-AAA-A-AAA--CNTAAA---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
Reference ( family-493 ) : TTCGTTTGATGCGGAAACGT-AAGT-A-AAATGGAN-----TTT-AACATTGGTGTGAGTCTCTTA---AAGAGCACAATACGTTTTAAGAAGAAT-GGTAGCGCNGTTGANNGAGTGNTGACCGCTTACTCCAAANNTTGCGGGTTTNGTC-GTCTTAATGGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TA-TATGTATTATTTTAA-TT----G-C-TG-TTTCG-AAA-A-AAA--CNTAAA---AGTGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATTTAATCGGAAGTAGTAACAGCTGACCACGTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGTAA--TATTATTTAAAGGGGCTGGGTGGAGGGGTGCTCCACCGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACAGTT-TGCTCCGAACTT-CAGAAAAGCCAGA-CC-TGTTGTTCTAATAATTGACAACCATGA
gi|1 : TTCGTTTGATGCGGAAACGT-AAGT-T-GAATTGAA-----TTT-AACATTGGTGTGAGTTTCTTA---AAGAGCACAGTACGTTTTTAGATGGAT-GGTAACGCAGTTGAAAGAGTGGTCACCGCTTACTCCAAAGATTACGGGTTTTATC-ATCATGATGACCATACAGATTTACCAGTCCGCGTCT-GTT-CATTCAACATCAAAAGAGTCAATGAGCCTTACAAC-TACC---TATGAATTCAA---TGT--------AACT-TA-TATGTATTATTTTAA-TT----G-C-TG-TATCG-AAA-A-AAA--CTTAAA----GTGCATTTCCATCATA--TTG--CT--TTTAAATATTGAACTTAACTT--TTTTACACATTAATGTTTTGGAATG--AA--ATGAATCTGCGAAAGGGTGGTTTGACCAAAA-CAGGTTGAAAGTGTATTTAATCGGAAGTAGTAACAGCTGACAACAGGACTGCATACTTGTGTGTATCTAC--AAATGAAAC-ATTT-TT-ACAAACATAAGTAA--TATCATCTAATTGGGCTGGGAGGAGGGGTGCTCCGCCGTACGCTAAATGACGATATACATGGATCGTAAC----TTTTCACTGTTTATCATAGTGGGTATTGCTTCAAGATC-ATTTTATGAATGTGTTACAGTT-TGCTCCGAACTTATAAAAAAGCCAGATCT-TGTTCTTCTTATAACAGACAACCA
gi|10 : ttaatatattcatataataatacatttatagtggaatgaTCAATGAGCTTTACAACGTAAT---TA---ATT--AACATGTGTCTCTGATACT-TA-TGTGTATTATTTCAA-TT----TTC-TG-TTTCG-AAA-A-CAA--AATGAA---AGTGCATTTCCATCATA--ATT--CT--TTTAGATATTGAATTTAACTT--TGATGTAACTTAATGTTTTGGAAAG--GA--AATAATCTACAAAAGGGTGATTTGATAAAAT-CCGCTTGGAAGTGTATTTAATCGGAAGAAGTAACAGCTGACCACGGGACTGCTCACTAGTGTGCTTC--------------------------AACACTA--AA--TATTACTCAGTTGGGCTTGGTGGAAGAGTGCTCCACCGTACGTTCAATGACGATATACTTTGTTCGTGGC----TTTTGACTTCTAATCATAGTAGGTATTGTTTCGCGCTC-ATTTTATGAATGTGTATCAGTT-TGCTCTGACCTT-CAGAAAAAACAAA-AT-TGTTGTTCTAATAATTGACACCCATGc
gi|11 : ataTTCGTTTAATGCGGAAACAT-ACGT-A-GAATGGAT-----TTT-AACATTGGTGTGAGTC----------------AACACGTTTTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTTAATAGCCATACAGATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAACGAGTCCATTAGCATTACAATATAAC---TC---AGG--A---TGTGTCTCTGAAACT-TA-AATGTATTATTTTAAATT----G-T-TG-TTTCGAAAA-A-AAA--CTTAAA---A-TGTATTTCCATCATA--TTT--CT--TTCAAATATTAAATTTAATTT--TGATATAACTTAATGTTTCGGAAAA--GA--ATTAATCTGCGAAAGGGTGATTTGATCAAAA-CCGCTTGGAAGTGTA-TTAATCGGAAGTAGTAACAGC
gi|12 : tagtatttcaagtagtaaaacattcaaaatgcaacgaTTCGTTTGATGCGGAAACGT-AAGT-T-AAATGGAA-----TTT-AACATTGGTGCAAGTCTCTTA---AAGAG--------ATTCTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTTTTAATGACCATATAAATT-ACCCGTCCGCGTCT-ATT-CATTCATCATCAAAAGAGTCAATGAACCTTACAGCATAAC---TG---ATT--A---TGTGTCTATGATACG-TG-TATGTATTATTTTAA-TTCAACG-CATG-TTTCG-AAC-A-AAA--TATTAA---AATAT-TTTCCATCACA--ATT--CT--TTTAAATATTAAATATAACTT--TGATATATTTTAATGCTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGATTTGACCAAAA-CCGCTTGGAAGTGTATT
gi|13 : ctagtactaatatattcatatagtaatacattcataatgcaatgaTTGGCGTTAGTCTCTTA---AAGAGCAATAGACATTCTAAGAAGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTCAATGGCCATACAGATT-ACCAGTCCTTGTCT-GTT-CA----------AAAGAGTAAATGAGCCTTACAACCTAAC---TA---ATC--A---TGTGTCTCTGAAACT-TA-T--GTATTATTTTAA-TT----G-C-TG-TTCCG-AAA-A-AAA--CATTAA---AGTGAATTTCTATCACA--ATT--CT--TCTAAATATTAAATTTAACTT--TGAAACAA---ACTGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGGTGA-TGGACCAAAACCCGCTTGGAAGTGTATTTAGTCGGAAGTAGTAACAGCTGACCACGTGACTGTCTAC----GTGTTTTTAC---AATAAAAC-A-T
gi|14 : TCTTACTGGCCATACAGATT-ACCAGCCCTTGTCA-GTA-TATTCATCATTAAAAGAGTCAATGAGCCTTACAACATAAC---TA---AAT--A---TGTATCTCTGTAACT-TAATA-GTATAATTTTAA-TT----G-C-TA-ATTCG-AAA-ACAAA--ATTGAA---A-TGCATTTCCTTCATA--TTT--CT--TTTAAACGTTGAAATTAACTT--TGATGCAATTTA-TGTTTTGGAAAG--GA--ATTATTCTGCGATCGGGTGATTTGACCAAAA-CCGTTTGGAAGTGTATTGAATCGGAAGTAGTAATAGCTGACCACATGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TT-ACAAACAATAGCAA---ATCTTTTCAAAGGGCTGTGTGGAGGTGTGCTTCATCG
gi|15 : TTCGTTTGATGCGGAAACGT-TAGT-A-AATTGGAT-----TTT-A-CACTGGCGTGAGTCTCTTC---AGTAGCACAAAACGTTTTAAGAAGGGT-GGTAGCAACGTTGATAAAGTGTTGGTCATTTACTCAAAATGTTGCGTGTTTGGTC-GTCTAAATGTCTAAAAAGA---ATCAATGCT--TCT----------AACAACATAA------------CTGATAATGTATC---TA---A-T--A---GATGT------AACT-GA-GTTGTATTATTTTGA-TT----G-A-CGTTTTC---AA-A-CCA--CATTAT---A-TGCATTTTTATCACAGGTTTTGTT--TTTAAATATCGAATTCAACTT--TGATAAAA
gi|16 : tatttatatttttatttgggtttacattcctgttacaacgaTCTGC--AAATGAAAC-AATT-TT-TCAAACAGTGGTAA--TATTATTCAAAGTTGCTGGGTGGTGGGGTGCTCCAACGTACATTCAATGGCGATACAC-------GTGGC----TTTTCACTGCTAACCATAATGGGTATTGTTTCCAGCTG-GTTGTATGAATGTGTAACAGTT-TGCTCCGAACTT-TAGAAAAGCCAGA-CC-TCTTGTTCTGATAATTGATGAACATG
gi|17 : TTCGTTTGATGCGGAAACGT-AAGT-A-AAAGGGAT-----TTT-ACCATTGGTGTGAGTCTCTTA---AA-AGCACACTTCGTTTTAA
gi|17 : tcatatcttatatatatcttaatatattcataatgcaatca-GTCTTAATAGCTATACAGATT-Atannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcttaatagctatacagatta
gi|19 : tcatatcttatatatatcttaatatattcataatgcaatcattcgtttgatgcggaaacgtaagtaaaagggattttaccattggtgtgagtctcttaaaagcacacttcgttttaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACAATACGTTCTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTTAATGACTATACAGATT-ACCAGTCCAGGTCT-ATT-CATTCATCATCAAAAG-------------TACAGCATAAC---AA---A
gi|2 : TTCGTTTGATGCGGAAACGT-AAGT-G-AAGTGAAAGGAAATTG-AACATTGGTGTTAGTCTCTTA---AAGGGCACAACACGTTTTNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-ATCTTAATGGTTATACAGATT-ACCAGTCCTCGTCT-GTT-CATTGATCATCTAGAGAGTCAATGAGCCTTACAACATAAC---TA---ATT--A---TGTGTCTCTGAAACT-TA-TATGTATTAATTTTA-TT----G-T-TG-TTTCA-ATA-A-AAA--CATAAT---ATTGCATTTCCATTAGA--TTT--CT--TTTAAATATTGAATTTAACGT--TAATACAACTAAATGTTTTGGAAAG--GA--ATTAATCTGCGAAAGGTAGATTTGACCAAAA-CCATTTGGAAGTGTATTTAATCGGAAGTAGTTACAGCTGACCACCTGACTGCCCACTTGTGTATTTCTGC--AAATGAAAC-ATTT-TT-AAAAACAATAGTAA--TGTTATTTAAAATGGCTGGGTGGAAGGATGCTCCATCGTACTTTCAATGCCGATATACCTGGATCGTGGC----TTTTCACTGCTAACCATAGTGGGTATTGTTTCCAGCTC-ATTTTATGAATATGTAACAGTT-TGTTCCACACTT-AAGAAAAGCCAGA-CC-TATTGTTAAAATAATTGACAACCATGA
gi|21 : TTTGATGTAGAAACATAAAGTAA-AAATGGGA-----TTTGAACATTGCTGTATGTCCCT
gi|25 : tccccataatgtcatgtgttcatagatgtatccaatgaCTTAATGTTTTGGAAAT--GACTATT--TCTGCGAAAGGGTGATTTTACCAAAA-CTGCTTGGAAGTGTATTT-ATCGGAAGTAG
gi|27 : TTCGATGCGTAAACAT-AACT-TTAAAT--AT-----TTA-AACATTGCTGTGTGTCCCTT
gi|28 : ataagttcaaaaattaaTTCGGTTGATGCGGAAACGT-TAGT-A-AAcagt
gi|29 : atttatattttcatttgggtttacattcctggtataacgaAACGTATAATAGTT-TGCCCTGAACTT-CAGAAAAGCCAGA-CT-TGTTGTTGTAATAATTGAAAACCATGtt
gi|3 : TTGTTTGATGCGGAAACGT-AAGT-A-GAATGGAC-----TTT-AACAGTGGTGTGAATCT--TA--------TACAATACGTTTTAAGAAGGAT-GGTAGCGCAGTTGATCGAGTGTTGACCGCTTACTCCAAACCTTGCGGGTTTAGTC-GTCTTAATGGCCATACAGATT-ACAACTTCTCGCCTCTTT-CATTCATCATCAAAAGAGTCAATGAGACCTACAACATAAC---TA---ATT--T---TGTGTCTCTGAAATT-TA-TATGTATTATCTTAA-TT----G-C-TG-TTAAG--AA-A-AAA--CTTAAA---A-TGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATGCAAGTTAATGATTTGGAAAG--AA--A-----CCGC-----------TTGA---------------AAGTGTATCTAATCGGAAGAAGT-ATAGCTGACAACGTGACTGACCACTTGTGCGTTTCTGC--AAATGAAACAA-TT-TT-ACAAACAATAGTAA--TATTATTCAAAAGGGCTGAGTTGAGGGGTGCTCCATCGTTCGCTCAATGACGATATACCTGGATCGAGGC----GTTTCACTGCTAACTATAGTGGGTATTATTTCAAGCTC-ATTTTATGCATGTGTAATCGTT-TGCTCCGAACTT-CAAAAAAGCCAGG-CC-TCTGGTTCTGATAATTGACAACCATGA
gi|30 : gtataaatatcttaataaagtaatacactcataatgcaatgaaTGTAACAGTT-TTGTCCAAATTT-CAGAAAAGCAAAA-CC-TGTGGTTCTGATAATTGACAACCATG
gi|4 : tAACGC-AAGT-A-AAATTGAA-----TTT-AACATTGGCGTGAGTCTATTA---GAGAGCACCATACGTTCTAAGAAGAAT-G-TACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNTTAATGGCCATACAGATG-ACCAATCCTCGTCT-TTT-CATTCATCATCAAAAGAGTCAATGTGCCTTACAACA--ACATGTA---ATT--A---TGTGTCTCCGAAACA-TA-TATGAATTATT--AA------------------A-AAA-ATAAA--AATAAATAAAGTACATTTCCATCATA--ATT--CTATTTTAGATATTGAATTTAACTT--TGATACAACTTAATGTTTTGGAAAG--TA--ATTAATCTGCGGAAGTTTGATTTGACCAAAA-CCGCGTGGAAGTGTATTTAATCGGAAGTATTAATAGCTGACCACGTGACGGCCCACTTGTGAGTTTCTGC--AAATGAAAC-A-GTATT-ACAAACAATACTAA--TATTATT----GGGGATGGGTAGAGGGGTGCTCCACTGTACGTCCAATGACGATATACCTGGATCGTGAC----TTTTCACTGCTAATCATAGT---T-TTGTTTCAAGCTC-AGTTTATGAATGTGTAACAGTT-TGCTCCGAACTT----------CAGA-CT-TGCTGTTCTAGTAACTGACAACCATG
gi|5 : ctagtattaatatcttcatataataatacatccat-GTCTTAATGGCCATACAGATT-GCCAGTCCTCATCT-GTT-CATTCATCA---AAACAGTCAATGAACCTTACAACACAAC---TA---ATT--A---TGTGTCTCTCAAACT-TA-TATGTATTCTTTTAA-TT----G-C-TG-TTTTG-AAA-A-AAAATCTT-AA---AGTGCATTTCCATCATA--ATT--CT--TTCAAATATTGAATTTAACTT--TGATAAAACGTAATGTTTTGGAAAG--GA--AT----------AAAGGTGATTTGACC-AAA-CCGCTTG---TTGTATTTAATCTATAATATTGACAGCTGACCACGTGACTGCCAAC--------TTCTGCAGAAAAAAAAC---TT-TT-ACAAACAATTGTAA--TATTATTTTATGGGACTGGGTGGAAGGGTGCTCCATCGTAAGTTCAATGACGATAAACATGGATCGTGGC----TTTT--CTGCTAATCATAGCGGGTATTGTTTCAGGCTCAATTTTATGAATGTGTATCA-TT-TGCTCCAAACTT-CAGAAAAGCCAGA-C----TTGTTCTAATAATTGACAACCAT
gi|6 : aacgcaatgcttcgttcaatgcggaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGAAACGT-AGGT-A-AAAT-----------T-AACATTGGTGTAAGTCTCTTA---AAGAGCACAATGCGTTTTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTTTTAATGACCGTACATATT-ACCAGTCCTCGTCT-GTT-CATTCATCATCAAAACAGTCAATGAGCCTTACAACGTAA-----------T--A---TGTGTCTCTGAA--TGTA-TGTGTATTATTTTAG-TT----G-T-TA-TTTCG-AAA-A-ATA--CTTAAA---A-TGCATTTCCATCAGA--TTT--GT--TTTAAATATTGAATTTAACTTAATGAAACAACTTAATGTTTTGGAAAG--GA--ATTGATCTGCGAAATGTTGATTTGACCAAAA-CGGTTTGAAAGTGTATTTAATCGGAAGTAGTAGCAGCTGACCACCTGACTGCCCACTTGTGTGTTTCTGC--AAATGAAAC-A-TT-TA-ACAAACAATAGTAA--TATTATTTGAAAGGGTTTGGTGGAGGGTTGCTTCACCGTACGTTCAATGACGATATACCTGGATCCTTGC----TTTTCACTGATAATCATTGTGGGTATTGTTTCAAGCTC-ATTTTATGAATGTGTAACTGTT-TGCTCCGAACTT-TAGAAAAGTCACA-CCTTGTTGTTATAATAATTGACAACCATGa
gi|7 : TTTGTTTGATGCGGAAACGT-AAGT-A-GAATGGAT-----TTC-AACNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------GTCTTAATTGCCATACAGATT-ACCAGTCCTCGCCT-CTTTCATTCATCATCAAAAGAGTCAATGAGACCTAAAACATAAC---AT---ATT------TGTGTCTCTGAAATG-TA-TATGTATTATCTTAA-TT----G-T-TG-TTAAG-AGA-A-AA---CGTAAA---A-TGCGTTTCCATCATA--TTT--CT--TTTAAATATTGAATTTAACTT--TGATACAAGTTAATGATTTGGAAA---------TAAACCGCTAGAAAGTG--------------------------TATCTAATCGGAAGAAGTAACAGCTGACCACGTGACTGACCACTTTTGCGTTTCTG----------------------CAAACAATAGTAA--TATTATTAAAAAGGATT-----GAGGGGTGCT-----G-------AATGACGATATACCTTGATCGAAGC----TTTTTACTGTTAACTATAGTGGGTATTATTTCAAGCTA-ATTTTATGAATGTATAATACTT-TGCTCCGAACTT-CAGAAAAGCTAGG-CC-TCTGGTTCTGATAATTGACAACCAT
gi|8 : gtataaatatcttgatatagtaatacattcataatgcgctgaTGATGTGAGTCTCTTATGAAAGAGCACAATACGTTCTAAGAAGAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-GTCTTAATGGACATAGAGATTTGTCCGTCGTCGATT-GTT-CATTTATCATCAAAAGAGTCAATGAACCTTACAACATAAC---CA---ATT--G---TGTGTCTTTGAAATG-TA-TATGTATTATTCTAA-TT----G-C-TG-TTTCG-AAATA-AAA--GCTTAA---AGTGCCTTTTCATTATA--CTT--CT--TTTAAATATTGAATTAAGTAT--TGATACAACTTACTGTTTCGGAAAG--GA--ATACATCTGCGAAAAGGTAACTTTACCAAAA-CCGCTTGGAAGTGTATTTAATTGGAAGCAGTAACCGGTGATCACGTGACTGACCACTTGCGTGTGTCTGC--AAAAGAAAC-A-TT-TTCACAAACAATAATAA--TATTATTTAATGGGGCTGGGTGGAAGGGTGCTCCACTGTACGTTCAATGACGATATACCTGGATCGTGGC----TTTTCACTGCTAATCATAGTGGGTATTGATTAAAGCTT-ATTTTATGAATGTGTAACAGTT-TACTCCGACCTT-CAGAAAAATCATA-C----TTGTTATAATAATTGAAAACCATGa
gi|9 : AGTCTTTTA---AAAAGCACACTACGTTTTTAGAAGAGT-G-TGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTTAATGGCCATACAGAT--------CCTCGTCT-GTT-CATTCATCATCAAAAGAGTCAAATAGCCTGACAACATTAC---TA---CTT--A---TGTGTCTCTGAAACT-TA-T--GTATAATTTTAA-TT----G-C-TG-TTTCT-AAA-A-AAA--CTTAAT---C-TGCATTTCCATCATA--TTT--CT--TTTAAATATTGAATTTTAGTT--TGATACAACTTAATGTTTTGGAAAGAGGA--ATTAATCTGCGAAAGGATGATTTCACCAAAA-CCGCTTGTGAATGTATTTAACCGGAAGTTATAACAGCTGACCACGTAACTGCCCACTTATGTGTTTCTTC--AAATGAAAC-ATTT-TT-AAAAATAATACTAATTTATGATTCAAAGGGGCTGGGTGGAGGGGTGCTCAACCGTACGTTGAATGACGATATACCTGGATCTTGGCTCAGTTTTC-CTGATAACCATAATGTGTATTGTATCAAAGTC-ATTTTATGAATGTGTAA-ATTTGTGCTTCGAACTT-CAGAAAAGTCCGA-CC-TGTTG---TAATAATTGACAACCAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GTAAACACTGGTAATACATTCTGATTATGATATTACAGAAAATAATACTTTGAAGTCGATATATTCATATGGTTATACGTTCATAGGTGTAAAACTTAATTTGATTAGTGAACATACATTAAATGATGTTAAACATTGCTGCATGTCCCTTTA
Unaligned ( gi|20 ): ATATTCGTATGGTTATAACTTTCATAGGTATAAAAATAGAATTGATACATTATTTGATAAAAGCAATTTAAACATTGCCTTTTATCCCTTTAACC
Unaligned ( gi|22 ): ATGATTATACGTCGATAGGTGTAAAACGCGAACATATATTTTATACCAAATTGATTTCAACATTTAAACATTATTACGTGTTCCTTTTA
Unaligned ( gi|23 ): TATAGTTAAACGTACATTGTTGTAAAAAGTTGATTTGATTCATGAACATGAGTGAAAATGCCATTCAACATTTGTGCATGTCCCTTTA
Unaligned ( gi|24 ): TTGATATCTTTACATGGCCACACATTCATAGTTGTATATATTAATTTGAAGAAACATATAATCTCAACATTGCTGTGTGCCCTTTTA
Unaligned ( gi|26 ): TTTCAGATAACAATATTTGGAGATCAATATATCCACAAGGTCATACATCCATAGGTGTAAAGTTTTACTTGAT