lowQualScore : 222 111111111 1 1 1 222 1111111 11111 33333333333333333333333333333333333333333333333333 11 3333333 1 111111 111 22 33333333 44444444444444444444444444444444444444444444444444444444444444444444444444444 1111111111111111 1111 11111 1 2222222222222 11 777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111111 11 1 1 6666666666666666 2222 5555 1
lowQualScore : 000 6 777777777 5 6 8888 3 2 4 7 3 0 7777 6 4 3 4 444 5 55 0000000 33 6666 33 11111 33 0 6666666 1 333 0 1 44 666 1 11111111111111111111111111111111111111111111111111 22 2 2 22 0 3333333 22 6666 6 5 3 77 44444 44 333333 1 3333 333 22 3333 666666 666 1 555 22 44444 00 5 1 00000000 0 22 1 2 99999999999999999999999999999999999999999999999999999999999999999999999999999 0 1 5555555 0 2222222222222222 0 7777 22222 2 3 2 22 22 666 3 3 5 7 1 44 333 2222222222222 00 22 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222 33 11111111 2 22 6 44 4 1 4 444444 0 3333 2 5555555555555555 1 22 22 22 33 333 1 2 1 1111 5 4444 7
lowQualScore : ... . ......... . . .... . . . . . . .... . . . . ... . .. ....... .. .... .. ..... .. . ....... . ... . . .. ... . .................................................. .. . . .. . ....... .. .... . . . .. ..... .. ...... . .... ... .. .... ...... ... . ... .. ..... .. . . ........ . .. . . ............................................................................. . . ....... . ................ . .... ..... . . . .. .. ... . . . . . .. ... ............. .. .. . ................................................................................. .. ........ . .. . .. . . . ...... . .... . ................ . .. .. .. .. ... . . . .... . .... .
lowQualScore : 000 0 888888888 4 9 5555 0 7 2 0 6 8 7777 0 0 6 0 444 4 00 8888888 99 1111 99 99999 77 1 2222222 9 333 2 9 44 777 4 66666666666666666666666666666666666666666666666666 11 0 3 66 3 3333333 66 7777 6 7 0 77 55555 55 444444 8 9999 000 44 7777 777777 777 8 000 55 55555 00 2 0 66666666 2 88 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000 5 8 9999999 7 0000000000000000 1 4444 55555 4 1 8 88 88 333 8 8 7 3 9 55 555 6666666666666 00 55 9 222222222222222222222222222222222222222222222222222222222222222222222222222222222 66 11111111 0 88 0 88 6 7 0 888888 4 4444 9 1111111111111111 7 44 44 00 11 999 5 7 4 2222 0 8888 0
consensus : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTCAAAAATCGATAGA----AAATCGGTCACTGACCACTTATCTTCGAACACTTCACTGTAAATCTAAAATAT-TAGTT----AAATTACAAAA-TTNTATTATTTTAAAG-GGAC-ACATCGCNATTTT--AACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT---N-A--GGCCA-------A-A---ATA-AT-ATATCCGTTTCTGGTTAG--CCC----NT----AA--AA-N-A---TAGTGTANACCA----------C----GTATGATTGTCTTTTC--TTTTTT-CA---CTCT--CGAG----GTACTAGTAATGTTCAGAGCAAGCCGATC-ATC----G--GT------TGTA-G----T---TGTA--TGT----TA------ACCAAG-TTAT---A--TT-----ATTGAGATAGGTAC----ATTAAAGATTCACTG--TACTGTTCT-GAATAACAA-----------------------N--A----------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATTCTCT----------------GTCTCTCTGGGCGGCCATGTTN--GATATCGTG--CAGCACACACATTAGA--ATATT--CAAAA-TCC-A-CATTTC-GTT--AGGTATAATG---CAGTG----TC--TG---TGTAACGGA--AATGATTTAGA-T---G-AA--AAT-AA-AT--A-A---CGA-TAA--GAAAGTAATGNTTTTGA--T-NTT---TTTTT--------AA-TTT---GG---AAA-AAAA--T-AGGGTC-GGCAGTAAAGATTAAG-GACGGTC------GGCCAAC----CGGAAACN--NATA--GTT--T-T-T--TT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGT----AT-AAAAAA-TACAAATCCAAAGAAATATCATTTTATAT
Reference ( gi|2 ) : TCCAAAATTGGATGGAAGTAATGTACAT---------GTATCTCAGAAGTCGATAGA----AAATCGATCACTGACCACTTTTCTTCGAACACTTCACTGTCAATCTAAATTAT-TAGTT----AAATTACGAAA-TTTTATTATTTTAAAG-GGAT-TCATCGCTATTTT--AACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT---A-A--GGCCA-------A-A---ATA-AT-ATATCCGTTTCTGGTTAA--CTC----GT----AA--AA-T-A---TAGTGTTTACCA----------C----GTATGCTTGTCTTTTC--TTTTTTCCG---CTCT--CGAG----GTACTAGTAATGTACAGGGCAAGCCGATC-GTT----G--GT------TGTA-G----T---TGTA--TGT----TA------ACAAGG-TTAT---A--TT-----ATAAAGATAGATAC----GATGAAGATTCACTG--TGCTGTTCT-GAATAACAA-----------------------C--A----------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATTTTCT----------------GTCTCTCTGGGCGGCCATGTTT--TATATCTTA--CAGCACACACATTATA--ATATT--CAAAA-CCC-A-CGTCTT-GTT--AGGTATAATG---CAGTG----TC--TG---TGTAACAAA--AATGATTCAGA-T---ACTA--AAT-AA-AT--A-A---CGA-TAA--GAAAGTAATGATTTTGA--T-ATG---TTTTT--------AA-TTT---AG---AAA-AAAA--T-AGGGTA-GGCAGTAAATATTAAG-GACGTTC------AACCAAC----CAGAAACG--TATAGGGTT--TAT-T--TT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGT----AT-AAAAAACCCCAAATCCAATGAAATATCATTTTATAT
gi|4 : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTAAAAAATTGATAGA----AAATCGGTCACTGAACACTTATCTCTGAACACTTTGCTGTAAATCTAGAATAT-TTGTT----AAATTACAAAA-TTGTATTATTTTAAAG-GGAC-ATATCTCCATTTT--ATCACATTTTCACT-------TAAAGCAATT--TTTAAA----A--TTACT---A-A--GGCCA-------A-A---TTA-AT-ATATCCGTTTCTTGTTAG--CCC----GTAA--AA--AA-T-A---TAGTTTATACCA----------A----ATATGATTGTCTTTTC--CTTTTTTCA---CTCT--CGAT----GTACTAGTAATGTTCAGAGCAAGCCGATC-ATT----G--GGA-----TGTA-G----T---TGTA--TGT----TA------ACCAAG-TTAT---A--TT-----ATTGAGATAGGTAC----ATTACAGATTCACTG--TACTGATCT-GAATAACAA-----------------------A--A----------TA--A-C-----------CA---TG------T--AT----TCAGGGC-AG-------TATTTTCT----------------GTCTCTCTGTGCGGCCATGTTT--GATATCGTA--CAACACACACATTAGA--ATATT--CAAAA-TCC-G-CATTTT-GTT--AATTATAATG---CAATG-----C--TT---TGTAACGGA--AATGATTTAGA-T---GAAA--AAT-AA-AT--A-A---CAG-TAA--GAAAGTAATG-TTTT-----------------------------------------A-AAAA--TCAGGGTC-GACTGTAAAGATAAAG-TACGGTC------AACCAAC----CGGAAACT--TATG-------TGT-T--TT--TTGC--CT---TATCAAATATGAAATT-AAACA
gi|6 : attgtgtttgtgtttttgttttattcccTCCAAAAACTGATGAAAGTTATGCACAT---------GTATCTCAAAAATTGATCGATAACAAATCAGCCACTGGCTACTTT-CTTTGAACTTTTTACTATAAATTTAAAATAT-ATGTT----TAATTACAAAA-TGTTATTATTTTAAAG-GGAC-ACATTGCAATTTT--ATTACATTTTCACT-------AAAAGCAATT--TCTAAA----A--TTATTTATA-A--TATTA-------A-ATCAATT-AT-ATATCCGTTTCTGGTTAG--CCC----GTGAAAAA--AA-T-A---TAATGTAGACCA----------C----GTATTATTGTTTTTTT--TCTTT---G---TTTTTCCGAT----GTAATAGTACTATTCAGAGCAAGCCAATC-ATT----G--GT------TGTA-G----T---TGTA--TGG----TA------ACCAAG-TTAT---A--TT-----ATTGAGATAGGTAT----ATTAATTATTTACTG--TGCTGTTCT-TAATAACAA-----------------------T-------------TAGTA-C-----------CA---TT------T--GT----TCGGAAA-AG-------TATTCTCT----------------GT-TCTCTAGGCGGCCATATTT--GATATCGTA--CAGTACACCCATTAGA--CTATT--CAAAA-TAC-A-CAT-TT-GTT--AGGTATGATG---CAGAC----TC--TT---TGAAACGGA--AATGTTGCAGG-T---G--A--AA----------------GA-TCA--AAACGAAACACTTTT------------TTTTT--------AA-TTT---GG---GAA-ACAA--T-AGGGCC-GGCAGTAAAAATTAAG-AACGGTC------AACTAAC----CAGAAGCA--AAT---GTT--T-T-C--GT--TGGC--CT---TATCAAATATAAAATT-AAA
gi|5 : cccTCCAAAAATTGATGGAAGAAATGCACATACAAATTGTGTATCTAAAAAATCGATAGA----AAATCGGCCACCGGCCACTTATCTTCCAACACTTCACTGTGAATCTAAAATAT-TAATCTAAAAAATTACa
gi|3 : cgttttgtgtttgtgtattttctcctTCCAAAAATTGATGTAAGTGTTGCACAT---------GTATCTCAGAAATCGATAGA----AGTTCGGTCACTGACCACTTATCTTCGAACACTTCACAGTTAATCTAAAATAT-TAG-T----AAATTACAACATTTTTATTA-TTTAAAG-GGAC-ACATCGCTTTTTT--AACACATTTTCACT-------TAAAGTAATT--TCTAAAAACTA--TAACT---ATAATAGTCA-------A-A---TTA-AT-ATATACGTTTCTGGTTAG--CCC----GT----AA--AA-A-A---TAG-----A------------------------TTGT-TTTTA--TTT----CA---CTTT--CGAG----GTTCAAGTAATGTTCAGAGCAAGCCTATC-ATT----G--GT------TGTA-G----T---TTTA--T-------------------G-TTAT---A--TT-----ATTGAGGTAGGTAC----ATTACAGATTCACTG--TACTGCTCT-GAATTACAA-----------------------A--A----------TA--A-C-----------CA---TT------T--GT----TCAGGGC-AG-------TATTCATC----------------GTCTCTAT--ACGGCCTTGTTT--GACACCGTA--CAGCACACACATTAGA--ATATT--CAAAA-TCC-A-CATTTT-GTT--TAGTATAATT---CAGTA----T--------------------ATGAT---GA-----A--A--AAT-AA-AC--A-A---CAA-TAA--GAAAGTGATGttaggcccaaatcatatatccgtttctggttagcccgtaaaaaaaagtgtataccacgtataattgtcttttctttttttttcactgtcgaggtactagtaatgttcagagcaagttgtatgttgacaaagttatattactaaaataggtatattaaagattcactgtgccgttctgaataaaataataaccatttgttcggggcagaatatctgtctctctgggcggccatgttcgatatcgtgcaaattagaatattcaaaatcaacgtttcgtatgcattgtgtgtgtaacgggaatgttttaaatgaaaaataaatagcaataagaaaaaaatatttttgatttttttttttaatttggtaacgaatatggtcggtagtaaaaattaaggacggtcaaccaaccagaaacttatgttttttttggctttttattaaatatgaaattaaataccttagtataaaaatacaaatccaaagaaatatcattttatgattggtatacgacatt
gi|9 : ttctgtgtttgtgttgttttctcTCCAAAAATTGATGGAAGTAATGCACAT---------ATATCTAAAAGATTGATAGA----AAATCGGTCACTGAACACTTATCTCTGAACACTTTGCTGTAAATCTAGGATAT-TTGTT----AAATTACAAAA-CTGTATTATTTTTAAG-GGAC-ATATCGCCATTTT--AACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT---A-A--GGCCA-------A-A---TTA-AT-ACATCCGTTTCTTGTTAG--CCC----TT----AA--AA--------AATGTTCAtagaacggtcagtcaaccgaaactgatggtttttttaccttatcaaatatgaaattaaatacctcagtaaaaaaaaacaaatccaaagaaatatcatttcatatgttcaagcattttccggacacatctattcaaaactaacatgactgca
gi|19 : tcccTCCAAAAACTGATGGAAGTAAAGCAGAT---------GTATCTCAAAAATCGATAAC----AAATCAGCCACTGGCTACTTT-CTTCAAACACTTTACTGTAAATTTAAAATATATGTTT----AAAT-ACAAAA-TGTTATTATTTTAAAG-GGAC-ACATTGCAATTTT--ATTACATTTTCACT-------CAAAGCAATT--TCTAAA----A--TTACT---A-A--TAATATTAAATCA-A---AT--AT-ATATCCGTTTCTGGTTAG--CCC----CTGAAAAA--AA-T-G---TAGTGTAGACCA----------C----GTATTATTGTTTTTTC--TTT-----------------------GTACTATT------CAGAGTAAGCCAATC-ATT----G--GT------Tgagcaagccgatcattgggatgaggtgtgtgttaaccaagttatattattgagataggtacattacagattcactgtactgatctgaataacaaaataaccatgtattcagggcagtattttttgtctctctgtgcggccatgttttatatcgtacagcacacacattagaatattcaaaatccgcattttgttaattatacttcaatgctttgtaacggaaatgatttagatgaaaaataaataacaataagaaagtaatgttttgaaaaatcagggtcgcttgtaaagataaagtacagtcaaccatccggaaatttatgtgttttttgctttatcaaatatgaaattaaatac
gi|37 : tttatgttcgagtttttttcttcccTCAAAAATTG-ATGGAAGCAATGCACAT---------GCAGCTCAAAA
gi|7 : ttttgtggttgtgttttttcttccctGATGGAAGTAATGCACAT---------GTATCTCATA--TCGATAAA----AAA-AGGTCACTTACCACTTATCTTCGTACACTTCAATGTAAATCTTAGATAT-TAGTT----AAAGTACAAAA-TTTTATTATTTTAAAG-GGAC-ACATCGCTATTTT--AACCCATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT---T-A--GGCCT-------A-A---ATA-AT-ATACCCGTTTCTGGTTAG--CCC----GTA---AA--AA-A-A---TAGTGTATACCA----------C----GTATGATTGTTTTCTT--TTTTTT------CTCC--CGAG----GTAGTAGTAATGTTCAGAATAAGCCGATC-ATT----G--GT------TGTA-G----T---TTTG--TGT----TA------ATCAAG-TTAT---A--TT-----ATTGAAATAGGTACATCTAATTAAGATTCACTG--TGCTGTTCT-GAATAACAA-----------------------A--A----------TA--A-C-----------CA---TT------T--GT----TCAGGGC-AG-------TGTTCTAT----------------GTGTCTCTGGGCGGCCGGGTTT--GATAT------------ACACATTAGA--ATATT--CAAAA-TCC-A-CATTTT-GTT--AGGTAAAATG---TAGTG----GC--TG---TGTAACGGA--TATGGTTTGAA-T---A--A--AATAAA-AT--A-A---AAA-CAA--GAAAATAATGTTTTTGAT-T-TTA---TTTTT--------AA-TTT---GG---AAA-AAAA--T-ACAGTC-GGCAGTAAAGATTAAG-GATGGTC------AACCAAC----CGGAAagc
gi|35 : tGATGGAAGTAATGCACGT---------GTATCTCAAAAATCGAAAGC----AAATCGGTAACTGACCGTTTATCTTCGGACACTTCACTGTAAATCTAAAttttttttttt
gi|1 : ttATCTCAAAAATCGATAGA----AATTCGATCACTTACCACTTATCTTCGAACACATCTCTGTAAATCTGAAATAT-TAGTT----AAATCACAAAA-TTGTATTATTCTAAAATGGAC-ACATCGCTGTTTT--AATACATTTTCATA-------TAAAGCAAAT--TCTAAC----A--TTACT---T-A--GGCCA-------A-A---GTA-AT-ATATCCGTTTCTGGTTAG--CCA----AT----AA--AA-A-A-----------ATAA----------C----GTATAATTATCTTTAC--TTTTTTC-A---CTGT--CAAG----GTTCATGTAATGTTCAGGGCAGACCGATC-ATT----G--GT------TGTA-G----T---TGTA--TGT----TA------ACCAAA-TTAT---A--TT-----ATT----TAGGTAC----ATTAAATATTCACTG--TGCTGTTCC-GAATAACAA-----------------------A--AA---------TA--A-G-----------CA---TT------T--GT----TAGGTAC-AG-------TATTTTCT----------------GTCCCTCTGAGCGGCCACGTTT--GATATCGTG--CAGCACACAGATTAGA--ATATT--CAAAA-TCC-A-TA-CTT-GTTT-AGGTAAAATG---CAGTT----TT--TT---TGTTACGGA--AATGATTAAGA-T---GAAA--AGT-AA--T--A-A---CAA-TTA--GGAAATAATGCTTTTTT--T-TTT---TTTTTTA------AA-TTT---GG---GAA-AAAA--T-AGGACA-GGCAGTAAATATAAAG-GACGGTC------AACCAACTAACCGGAAACT--TAC---GCC--T-T-T--TT--TG-C--CT---TATCAAATATGAATTT-AAATACCTCAGT----ATCAAAAAACT---AATCCAGAGAAATAACATTTTATATac
gi|8 : ATCTCAAAAATCGATAGA----AATTCGATCACTGACCACTTATCTTCGAACACTTCTCTGTATATCTAAAATAT-AAGTT----AAATGA-AAAA-TTCTATTATTTTAAAG-GGAC-ACATTGCGATTTT--AATACATTTTCACT-------AAAAGCAATT--TCTAAA----A--TTAC---------------------------ACA-A------CCATTTCTTGATAG--CCA----GT----AA--AA-G-AA--TAGTGTAGACCA----------C----ATAT----------TC--TTTTTTTCA---CTCT--CGAG----GTGCTAGTAATGTTCAGAGCAAGCCGATC-ATT----G--GT------TGTA-G----T---TGTAGTTGTATCTTA------ACCAAG-TTAG---G--TT-----ATTGAGATAGGTAC----ATTAAAGATTCACTG--TGCTGTTCT-GAATAACAA-----------------------A--AA---------CA--A-A-----------CA---CT------T--GT----TCAGGGC-AG-------TATTCTCT----------------GTATCTCTGAGTGACCATGTTT--GATATCATA--AAGCACACACATTAGA--ATAC---CAAAA-TCC-A-CATTTT-GTT--AAGTATAATG---CAGTG----TT--TA---TGTAACAGA--AATAATTTAGA-T---GAAA--AAA-AA-AT--A-A---AAA-TAA--GAAAGTAATGTTTTTGA--T-TTT---TTTTT--------AA-TTT---GG---GAA-AAAA--T-GGGGTC-GGCAGTTAAGATTAAG-GACAGTC------AACCAAC----CCAAAACT--TAT---GCT--T-T-T--TT----GC--CT---TATCAAATATGAAATT-AAATAgttaaaacattttcacaggtacattcaaaactaacatgacttct
gi|25 : TCACTGTCCATTTATCTTCGAACACTGCACTGTAAATATAAGATAT-AGGTT----AAATTACAAAA-TCGTATCATTTTAAAA-GGACATC-TCGCAATTTT--AACACATTTTCACT-------TATAGCAATT--TCTAAA----A--TGACT---T-A--GGCCA-------ATA---ATA-AT-ATATCCGTTTCTGGTTAG--TTC----CT----AA--AA-T-AAAGAAGTGTAGACCA----------CGCCTGTATGATTGTCTTTTC--CTTATT-CA---CTCT--CGAG----GTACAAGTAATGT
gi|23 : cagCACTGACCATTTATCTTTGAACACTTCACTGTAAACCTAAAATAT-TAGTT----AGATTACAAAA-TTCTATTAGTTTAAAG-GGAC-ACATTGCAATTTT--AACACATTTTCTCT-------TAAAGGAATT--TCTAAA----A--T----------------A-------A-A----------ATATCCGTTTCTGGTTA-----C----CT----AA--AA-T-AAGGTAGTGTAGACCA----------C----GTATGATTGTCTTTTC--CTTTTT-CA---CTCT--CGAG----GTACTAGTAATGTTCAGt
gi|5 : TATCTTCCAACAC---TTCACTGTGAATCTAAAATA-TTAATCTAAA----AAATTACT---T-A--GGCCC-------A-A---ATC-AT-ATATCCGTTTCTGGTTAG--CCC----GT----AA--AA-A-A---AAGTGTATACCA----------C----GTATAATTGTCTTTTCTTTTTTTTTCA---CTGT--CGAG----GTACTAGTAATGTTCAGAGCA------------------------------A-G----T---TGTA--TGT----TG------ACAAAG-TTAT---A--TT-----ACTAAAATAGGTAT----ATTAAAGATTCACTG--TGCCGTTCT-GAATAAAAT-----------------------A--A----------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG--------AATATCT----------------GTCTCTCTGGGCGGCCATGTTC--GATATCGTG--CAA-------ATTAGA--ATATT--CAAAA-TCA-A-CGTTTC-GT----------ATG---CATTG----TG--TG---TGTAACGGG--AATGTTTTAAA-T---GAAA--AAT-AA-AT--A-G---CAA-TAA--GAAAAAAATATTTTTGATTT-TTT---TTTTT--------AA-TTT---GG---TAA-CGAA--T-ATGGTC-GGTAGTAAAAATTAAG-GACGGTC------AACCAAC----CAGAAACT--TAT---GTT--T-T-T--TT--TGGCTTTT---TATTAAATATGAAATT-AAATACCTTAGT----AT-AAAAA--TACAAATCCAAAGAAATATCATTTTATatccatatattgttaagcattttaacaggtacattca
gi|26 : cgttttgtgtttgtgtattttctccttccaaaaattgatggaagaaatgcacatacaaattgtgtatctaaaaaatcgatagaaaatcggccaccggccact-------TAAAGCAATT--TCTAAA----A--TTAAT---T-G--GGCGA-------A-A---ACA-A--ATGTCCGTTTCCGATTAG--CTC----CT----GAGTAATT-C---TAGT-----CCA----------C----GTATGATTGTCTTTTT--TT----------CTTT--CAAG--------TAGTAATGTTCAGAGCACGCCAATC-ATC----A--GTTGAACATGCA-G----T---TGTA--TGT----TG------ACCAAG-TTAT---A--TT-----Agattggtatacgacatt
gi|27 : AATT--TCTAAA----A--TTAAT---T-G--GGCGA-------A-A---ACA-A--ATGCCTGTTTCCGATTAG--CTC----CT----GATTAA-TTC---TAG-----ACTA----------C----GTATGATTGTCTTTTT--T-----------CTCT--CCAG--------CAGTGATGTTCAGAGCACGCAAATC-ATC----AT-GTGAACA-TGCA-G----T---TGTA--TTT----TG------ACCAAG-TTAT---A--TT-----Aatccaattttcagtgcattattttctttctctctgggcggccatgttggatattgggcagcacacgcatca
gi|36 : ATT--TC-ATA----T--TTGAT---A-A--GGCAA-------A-A---ATA-ACAACATTTGTTTCCGGTTGA--CTaaccaattttcagtgcagtattttctttctctctgggcggccatgttggatattgggcaacacacgca
gi|29 : aaagtaaagacggtcT---A-A--GGCAA-------A-A---ATA-ACAACATTTGTTTCCGGTTGA--CTaaaatacatccgttcaaataaaa
gi|12 : aaagtaaagacggtcCCA-------A-A---ATATAT-ATATTTATTTCTGGTTGG--CTCCTG-GC----AA--AA-------TAGGGTAGATAA---------------GTAAAATT--------------TTCC----CCCA--TGAG----ATACTAGTAATGTTCAAACCAAGCCAATC-ATC----G--GC------TGTA-G----T---TGTA--TGT----TT------ACTTAG-TTAT---A--TG-----TTTGAGATATATAC----ATTAAAGATTCATAT--TACTGTTCTGGAATAGCAA-----------------------CA-A----------TA--A-CAATGTTTCAGTCA---TT------TC-AC----CTGGGTC-AG-------TACTCTCT----------------GTCTCTCTGGACGGCCATGTTG--GATTCCGTG--CAACAAACAAATAAGA--CTATT--GAAAA-CAT-A-CATTTC-GTT--AGtcaaatataaattaaaatacatccgttcaaataaaacatatacaaagaaatattattttatatgtttatgaatttccactgatacaatcaaaattatcatgacttc
gi|11 : aCA-------A-A---AAA-AT--TGTTTGTTTCTGGT-AAGCCTCT---GA----AA--AA-A-A---TAG-GTTAGGTA----------T----GTAGGCTTTTTTTTTT--TTTTTTTTTTTTCTCC--CGAGACCTGTACTTTTAATGTTCAAATCAAGTC-ATCAGTT----GTAGC------TGTATG----T---TATA--TGT----TA------ACCATG-TTAT---A--TA-----ATTGACATAAA--------AT----ATTCATTA--TCCTGTTCT-GAATAGCAATAATAAAACTGTTTCAGTCCTATC--A----------TG--A-C-----------GA---CT------T--GTCTACTCGGAGC-AG-------AA---TCT----------------GTCACTCTTGGTGGCCATGTTA--AATATCGTG--CAGCAAACAAATTAGT--GTATT--AAAAA-CTCAA-CATTTC-GTT--AGGCATAATG---TAGTG----AC--AT---TGTAAT------GTGATGGAAA-T----TTT--AAT-GA-AC--------CAA-AAA--CAAA------ATTTTTA--T-ATA---TTTTTTCGA----AA-TTG---AA---AAATAAAAATT-AGGGTC-ACCAGTAAAAATTAGG-GACAGTC------GGCTAAC----TGGAAAC------AAAGTT--TTT-T--TT--Tctgaaatttgttttttttctttttgaaattggggaaaaataggatcagcagtataagttaaggacggtcggccaaccggaaaaaaatgcattttttgcctgactataaatataattaaaa
gi|41 : ggCA-------A-A---A---AT-ATGTTC-TTTCTGGTTAA--CCC----CTG---AA--AA-A-A---TAGGGT
gi|15 : aaA-------A-A---A-A-AT-ATGTTCGTTTCTGGTTAG--CCCCCTGAT----AA--AA---A---TAGGGT-----A----------G----GTAGGTAT-TTTTTTC--GTTTTATTT---CTCC--CGAG----TTACTATTTATGCCTGATTCAAGTCAATC-AT-------------------A-G----T---TGTA--TGT----TA------ACCATG-TTATATAA--TTTACACATAAA---AGAT-C------TGAATAT-CAATAATNNNNNNNNN-NNNNNNNNN-----------------------N--N----------NN--N-N-----------NN---NN------N--NN----NNNNNNN-NN-------NNNNNNNN----------------NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNNNNTAGA--GTATT--CAAAA-CTC-AACATTTC-CTT--AGGCATAATG---TA-----------------GTGACA---------TT----------------GT-AATAT--A-A---TG-----------GTAATCATTTTGA--TCATGAAATTTTT--------AA------------AAA-AAAA--T-AGCATT-TGCAATAAAGA--AAGAGACGGTC------GGCTAAC----CGTAAACA--AAT-GTGTT--TTT-T--TT--Tagg
gi|13 : -------A-A---ATA-AT--TAT--GTTTTCGGTTAA--TCC----CTGA--AA--AA-T-A---GGGTATATACAATTTTCTTTCTC----TTTTGTTTGTCTTTTT--ATTTT-------CACC--CGAT----GTTCTAGTGATGTTTATAGCAAGTAAATC-ACCACCGG--GT------TGTA-A----C---TGTA--TGG----CA------ATCAAG-CTCT---A--TT-----ATTTAAATTGATAC----GTTAAAGATTTATTG--TACTGTTAT-CATTAAC-A-----------------------CTTA----------TA--A-C-----------TT---TT------TCCATCAAATCAGGATGAGCTTTATTTATTCTCT----------------GTCACTCTGGACGGCGATATTG--AATATCGTA--CAGCAAACAAAAT-TA--ATA------------C-A-CATTTC-ATA--AAGTAT-ATG---CAGCG----AC---------TAACAAA--AAAAATTTATA-T---At
gi|32 : g-------A-A---ATA--T-ATGTTCGTTTCTGGCTAG--CCC----CTGAA-AA--AA-A-A---TAG-GCTTGGTA----------G----GTAGGTTT-TAATTTG--TTTTCTAC----------CAAG----ATACTATTGATGTTTAAATCAAGTCAGTC-ATT----G--GT------TGTA-G----C---TGTA--TGT----TA------tattgaaattagaaaactaggacatgcagtaaaaaatacgaacggtcaacctaccagacataaaggtattttt
gi|20 : caaagGTTTCTTC--CTTTTTTTT---CTCC--CGAG----GTGCTCTCAATGTTCAAATTGAGTGAATC-ATA----A--GA------GGTA-G----C---TGTA--TGT----T-------ATA--G-TTA----A--CT--------------GACAT----AA--AAGATTCA-------TTGTTCT-GAATAGCAA-----------------------tata
gi|14 : gaaaaaaaatagggtaggtagC--TTTTTTACA---TTGT--CCAGAT--GTACATTTAATGTTCAAATCAAGTCAGTC-ATA----G--GT------TGTA-G----CCGCTGTA--TGC----TA-------TATGG-TAATC--ACCTT-----ATATA-ATGGACAT----AA--AAGATTCATTG--TACTGTTCT-GAAAAGCAA-----------------------TT-A----------TA--A-A-----------GAATGTT------TCAGTCATATCAGGAC-AA-------TGTCTGCT----------------G---CTCTGGGTGGCCATGTTG--GATATTGTG--CAACAAACA-ATT-TAGTATATT--AAAAA-CTC-AGCATTTC-GTT--AGGCATAATG----------------TA---TATAATGAA--AATCATTttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgtattcaaaacattttgttagtcattatgtagtaacattgtaatgttatggaaatc
gi|16 : aaaaaagatgttcatatctggtcagccagaatagggtagataggtagg--TTTTTTTCA---CTCT--CGAG----ATACTAGTAATGTCCAGAGCAAGTCGATC-ATT----G--GT------TGTA-G----T---TGTA--TGT----TA------ACTAGG-TAAT---A--TT-----GTTGAGATAGGTAC----ATTGAAGATTCACTG--TGCTGTTCT-GAATAACAA-----------------------A--A----------TA--A-C-----------CA---TT------T--GT----TACGGGC-AG-------TATTTTCT----------------GTCTCTCTGGGCGGCCATGTTT--GATATCTTG--CAGCACACACATTAAA--ATATT--CAAAT-TCC-A-CATTTT-GTT--AGGTATAATG---AAGTG----TC--TG---TGTAATGGA--AATGATTCAGA-T---GAAA--AAT-AA-AT--A-A---TAA-TAA--GTAAGTTAAGTTTTT----T-ATT---TTTTT--------AA-TTT---AG---GAA-AAAA--T-AGTGTC-GACAGTTAAGATTAAG-GACGTTC------AACCAAC----CGGAAACT--TAT-GGCTT--TTT-T--TT--TAGC--CT---TATCAAAAATGAAATG-AAATAttatttttgttttttgaaatttttttttgttggaaatttgaaaaaaaaaaataaggtttggcagtaaaaaatggggacggttggctaaccagaagcaaa
gi|10 : --TTTTTTC------TCT--CAAA----ATACCATTAATGTCGAAATCAAGCTGATC-ATT----G--GT------TGTG-GAACTT---TGCT--TGT----TA------ACCAAG-TTAT---G--TT-----ACTGAGATATTT--------TAAAGATTCATTG--TATTATTCT-GAATAACAG-----------------------T--AA---------TA--A-CAG---------TG---TT------TCAGTGATATCAGGGT-GG-------GGTTTACTTGATGGTATACGAGATGTCACTCTGGGCATTTATGTTG--GATATCG-G--CAGCAAAGAAATAAGA--GTATT--CTGAA-TAC-A-GATTTT-GTTTTAGGTATAATG---GAGTG----AC--CA---TGTAATGGA--AATCATTTAGA-------TG--AAC-AA-A---A-A--------AA--GACA------------A--T-ATT---TTTTT--------AA-ATT---GG---AAA-AAAA--T-AGGATC-AACAGTAAAAATTAGG-AACAGTCTTAGTAGGTCAAC----CAGAAACA--T-TTTTTTT--TATAT--TT--TTGC--CT---TAT
gi|9 : ggcttaataaaatgttcatatctagatggggctctaaaaaaaagggtagttaggtaggaAATGTTCAGAGCAAGCCGATC-ATT----G--GGA-----TG-A-G----G---TGTG--TGT----TA------ACCAAG-TTAT---A--TT-----ATTGAGATAGGTAC----ATTACAGATTCACTG--TACTGATCT-GAATAACAA-----------------------A--A----------TA--A-C-----------CA---TG------T--AT----TCAGGGC-AG-------TATTTTTT----------------GTCTCTCTGTGCGGCCATGTTT--TATATCGTA--CAGCACACACATTAGA--ATATT--CAAAA-TCC-G-CATTTT-GTT--AATTATACTT---CAATG-----C--TT---TGTAACGGA--AATGATTTAGA-T---GAAA--AAT-AA-AT--A-A---CAA-TAA--GAAAGTAATG-TTTTG----------------------------------------A-AAAA--TCAGGGTC-GCTTGTAAAGATAAAG-TACAGTC------AACCATC----CGGAAATT--TATG-------TGT-T--TT--TTGC--TT---TATCAAATATGAAATT-AAATACaacaccatataacataaa
gi|18 : tccctccaaaaattgatggaagtaatgcacatatatctaaaagattgatagaaaatcggtcactgaacacttatctctgaacactttgctgtaaatctaggatatttgttaaattacaaaactgtattatttttaagggacatatcgccattttaacacattttcacttaaagcaatttctaaaattactaaggccaaattaatacatccgtttcttgttagcccttaaaa--GT------TGTA-G----T---TGTA--TGT----TACATGTAACCAAG-TTAT---A--TT-----ATTTAGATAGGTAT----ATTAAATAATCACTG--TGTTATTCT-AAATAACAA-----------------------T--AAG--------T---A-C-----------CA---TT------T--GT----TTGAGGG-AG-------TATTCTCT----------------GT-TCTCTAGGCGGTCATATTT--GATATCGTA--CAGTACACATATTAGA--ATATC--CAAGA-TAC-A-CATTTT-GTA--AGGTATTATG---CAGAC----TC--TT---TGAAACGTA--AATGTTTC-----------A--AAT-GA-AA--A-A---CAA-AAC--GAAA-CAAT--TTTT----T-TTT---TTTTT--------AATTTT---GG---GAA-ACAA--T-AGGGCC-GGCAGTAAAGATTAAG-AACGGTC------AACCAAC----CAGAAACA--AAT---GTT--T-T-C--GT--TGGC--CT---TATCAAATATAAAATA-AAAT-CTTCAGT----GT-AAAAAA
gi|21 : ------TGCA-G----C---TGTA--TGT----TA--------------TAT---G--TT-----ATACA-ATTGACAT----AA--AAGATTTATTG--CACTGTTCT-GAATAGCAA-----------------------TA-A----------TA--A-A-----------AA---TTGTTGTCT--GC----TTGGGGT-AT-------TA--TTCT----------------GTCacgattccatagaaa
gi|22 : GTA-G----C---TGTA--TGT----TAT-----ATGTGAATCAT---G--TT-----ATAAAACTG---AC-----ATAAAGATTCATTG--TACTGTTCT-GAATAGCAA-----------------------TA-A----------TA--A--------------A----------------------------AA-------CGTTGTCT----------------G-----CTTGGTGGCCATATTG--GAAATTGTA--CAGCAAACAAATGAGT--GTATT--CAAAAGGCA-A-CATTTC-ATT--AGGCATAATA---TGGTGACATTG--TGA--TGTAAAGGA--AATCATTTTGA-T-----------------C--A-A---CAA-CAA--AAAA--AA-----TTGA----A-----------------------C---AA---AAA-ATAA--T-AGGGTC-GGCAGTAAAAATTAGG-GGCGGTC------GGCTAAC----AGGAAAC----AAAGG--T--TGT-T--TT--atactgtaaactcattatttcattaggcatataatcgtagtaacattataatgaaaatctctttcttggaatttttttttttgaaatttgcaaaaaaaaattagggtcggcagtaaaaagacggtcagctaaccggaaacaaaggtttttttcatggcctaatatgaaatttcatgatcaaaaa
gi|17 : ---TATA--TAT----TA------ACCATG-TTGC---A--T-----------AATTGACAT----AA--AAGATTCATCA--TACTGTTCT-GAATAGCAA-----------------------T--AATNNNNNNNNNN--N-N-----------NN---NN------N--NN----NNNNNNN-NN-------NNNNNNNN----------------NNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNN--NNNNNNNNNNNNNNNN--NNNTT--CAAAT-CTCAA-CATGTC-GTT--AGGCATAATGTTTCGGTA----ACATTGTAATGTAATGGA--AATCATT-----T---TTTG--------------------GA-CAA--AAAAGT-CTTCTTTT----T-TTT---TCTTTGA------AA-TTT---GA---AAA-ATAA--T-AGGATC-GGCATTAG--GTTAGG-GACGATC------GTCTAAC----CGGAAAC------AAAGTT--TTT-T--TT--TG
gi|26 : atgtttaccttttcgtcatgtcgtaatttgtatgctgattacgttgtcaggccaacaaaactttcgtgtc----------TA--ATC-----------CA---AT------T---T----TCAGTGC-AT-------TATTTTCT----------------TTCTCTCTGGGCGGCCATGTTG--GATATTGGG--CAGCACACGCATCAt
gi|27 : taaagcaatttctaaaattaattgggcgaaaacaaatgtccgtttccgattagctcctgagtaattctagtccacgtatgattgtctttttttctttcaagtagtaatgttcagagcacgccaatcatcagttgaacatgcagttgtatgttgaccaagttatatA--A-C-----------CA---AT------T---T----TCAGTGC-AG-------TATTTTCT----------------TTCTCTCTGGGCGGCCATGTTG--GATATTGGG--CAACACACGCA
gi|28 : aatttctaaaattaattgggcgaaaacaaatgcctgtttccgattagctcctgattaattctagactacgtatgattgtcttttttctctccagcagtgatgttcagagcacgcaaatcatcatgtgaacatgcagttgtattttgaccaagttatatta----TTGGGGC-AG-------AACTCTTT----------------GTCACTCTTGGAGGCAATGCTC--GATATGATC--CAGCAAACAAATTA-A--GAGTTAGCAAAT-TAC-A-CATTTC-GTT--AGGTATAACG---AGGTG----AC--CG---TGTCATGGA--AATCATT
gi|31 : taaagatttattgataaataataaaatcttttcagttataccaggaagtgttctacCGGCCATGTTGGATATATGTTGTGCAGTAAACACATTACA--GTATT--CAAAA-TAC-A-ATTTTTCGTT--AGGTATAATA---CAGTG----AC-------TGTAATGGA--ATTCGTTCTGA-C---GGCAGTAAT-AA-AT--A-A----GA-T-A--TAAAGTAGT-ATT
gi|24 : A-TCT-A-CATTTT-GTT--AGGTATAATG---CAGTG----TC--TG---TGGTACAGA--AATGATTTAGA-T---GGAA--AA--AG-AT--A-A---C------------------ATTTT------------TTTTT--------AA-TTT---GGGAAAAA-AAAA--C-AGGGTC-AGCAGTACAGATTATA-GATGGTC------A-CCAAC----CGGAAGCA--T-T--GGTG--TGT-T--GT--TTGT--CT---TATCAAATATAATATT-AAGTACATCAGA----AT-AAAAA----CAAATGCAAAGAAATATCGTTTTGTATgtt
gi|12 : g----TC--CG---TGCAACAAACAAATAA----GACT---ATTG--AAA-AC-AT--ACATTTCGT-TAGCTGAAATT--TGTTTTT----T-TTC---TTTTTG-------AA-ATT---GG---GGA-AAAA--T-AGGATC-AGCAGTATAAGTTAAG-GACGGTC------GGCCAAC----CGGAAA-------AAAATG--CAT-T--TT--TTGC--CTGACTAT-AAATAT--AATT-AAAttataagcattttcacaggtacattaaaa
gi|13 : accaaaatatatatatttatttctggttggctcctggcaaaatagggtagataagtaaaattttcccccatgagatactagtaatgttcaaaccaagccaatcatcggctgtagttgtatgtttacttagttatatgtttgagatatatacattaaagattcatattactgttctggaatagcaacaataacaatgtttcagtcatttcacctgggtcagtactctctgtctctctggacggccatgttggatAACAAA--ATTAATACACA-TTTCATAA--AGT-AT-ATGCA-G---CGACTAA--CAAAAAAA--ATTT--A--T-ATA---TATTG--------AA-ATT---AG---AAA-AC----T-AGGACA-TGCAGTAAAAAATACG-AACGGTC------AACCTAC----CAG--ACA--TAAAGG-----TAT-T--TT--Ta
gi|14 : gaaataattatgttttcggttaatccctgaaaaatagggtatatacaattttctttctcttttgtttgtctttttattttcacccgatgttctagtgatgtttatagcaagtaaatcaccaccgggttgtaactgtatggcaatcaagctctattatttaaattgatacgttaaagatttattgtactgttatcattaacacttataactttttccatcaaatcaggatgagctttatttattctctgtcactctggacggcgatattgaatatcgtacagcaTTTTGA--A-ATT---TTTTTTTGTTGGAAA-TTTGAAAA---AAA-AAAA--T-AAGGTTTGGCAGTAAAAAATGGG-GACGGTT------GGCTAAC----CAGAAGC
gi|21 : aaaaaagatgttcatatctggtcagccagaatagggtagataggtaggcttttttacattgtccagatgtacatttaatgttcaaatcaagtcagtcataggttgtagccgctgtatgctatatggtaatcaccttatataatggacataaaagattcattgtactgttctgaaaagcaattataaagaatgtttcagtcatatcaggacaatgtctgctgctctgggtggccatgttggatattgtgcaacaaacaatttagtatattaaaaactcagcatttcgttaggcataatgtatataatgaaaatcattttatttttgtt---TTTTTGA------AA-TTTGC-AA---AAA-AAAA--TTAGGGTC-GGCAGTAA-----AAA-GACGGTC------AGCTAAC----CGGAAACA-----AAGGTT--T-T-T--TTCATGGC--CT--------AATATGAAATT-aaa
gi|34 : tgcagctgtatgttatatgttatacaattgacataaaagatttattgcactgttctgaatagcaataataaaaattgttgtctgcttggggtattattctgtcatactgtaaactcattatttcattaggcatataatcgtagtaacattataatgaaaatctctttcttggaatttttt-AAAA--C-AGGGTC-AGCAGTAAAGATAAAG-GACGGTC------AATCAAC----CGGAAACA--AATGGTGTT--T-T-T--TT--TTGC--CT---TATC--ATA------C-AAATACCTCAGT----AT-AAAAAAtcatgatcaaaaa
gi|29 : TAAA-GACGGTC------AGTCAAC----CGGAAACA--AAT---GTTGTTAT-T--TT--TG-C--CT---TATCAAATAT-AAATTAAAATACATCCGTTCAAAT-AAAA-----CATATACAAAGAAATATTATTTTATATaca
gi|36 : aaagTAAA-GACGGTC------AGTCAAC----CGGAAACA--AAT---GTTGTTAT-T--TT--TG-C--CT---TATCAAATATGAAATA-AAATACATCCGTTCAAAT-AAAAgtttatgaatttccactgatacaatcaaaattatcatgacttc
gi|3 : aaagAG-AACGGTC------AGTCAAC----C-GAAACT--GAT--GGTT--T---T--TT--TA-C--CT---TATCAAATATGAAATT-AAATACCTCAGT----AA-AAAAAA--ACAAATCCAAAGAAATATCATTTCATAT
gi|25 : ttctgtgtttgtgttgttttctctccaaaaattgatgtaagtgttgcacatgtatctcagaaatcgatagaagttcggtcactgaccacttatcttcgaacacttcacagttaatctaaaatattagtaaattacaacatttttattatttaaagggacacatcgcttttttaacacattttcacttaaagtaatttctaaaaactataactataatagtcaaattaatatatacgtttctggttagcccgtaaaaaatagattgtttttatttcactttcgaggttcaagtaatgttcagagcaagcctatcattggttgtagttttatgttatattattgaggtaggtacattacagattcactgtactgctctgaattacaaaataaccatttgttcagggcagtattcatcgtctctatacggccttgtttgacaccgtacagcacacacattagaatattcaaaatccacattttgtttagtataattcagtatatgatgaaaaataaacaacaataagaaagtgatgt------AACTAAC----CAGAAACGGATATA----T--TAT-T--AT--TGGC--CT---gttcaagcattttccggacacatctattcaaaactaacatgactgca
gi|1 : cagtcactgtccatttatcttcgaacactgcactgtaaatataagatataggttaaattacaaaatcgtatcattttaaaaggacatctcgcaattttaacacattttcacttatagcaatttctaaaatgacttCTAAC----CAGAAACG--GATA-------TAT-TACTT--TGGC--CT---cctaaaataaagaagtgtagaccacgcctgtatgattgtcttttccttattcactctcgaggtacaagtaatgtt
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|30 ): AGAACTCAACATTTCGTTAGGCATAATGTTATGAGATTGTAATGGGTTTTTTGGGGGTTTTTTTTTTTTGGTAATTTGGAGAAAAAAAGGTCAGCAGTCATTGGCAGTCAGCTAACTGTAAACAAAAATTTTTTTTTT
Unaligned ( gi|33 ): AAAAATAGGGTAGGAAAAATGTTTCAGTCGTATCAGTACATTGTCTGCTTGGGGCAGTATTCTATCACTCTGAGGGGCTGGGGGTGGGAATCATGTTGGATATTGTGCAAAAAACAAATTAGTGTATT
Unaligned ( gi|38 ): ATTAAGCACTATTGGAATTTCACATTCATTTTAAATTTCTTGCGGGACAACTCGTTTCCTAAGG
Unaligned ( gi|39 ): AAAAAAAAAATAGAGTCGGTAGAAGAAAAAAATAGGGATGGTCAGGTAACCGGAAACAAAAGTT
Unaligned ( gi|40 ): CAAAAAAATATGTGCCTTACTTGTTGGCCCCTGAAAAAAATCGAGTAGGTAAGT
Unaligned ( gi|42 ): TGCGAGGGGGGTTGGCCTCAGAATAAATTAGGGCTGTCTAAAAAA
Unaligned ( gi|43 ): TATCATCATTTTAAATGTTTTAGCATTTTCACAGCTACATTAAAA
Alignments
lowQualScore : 111111111 1111111 1111 1111 1111111111111111111111 111111 1111111 333333333333333333333333333 11111111111 11111111 11111111111111 111111111111111 111111111111111111111 2222222222222222222222222222222222222222 111111 3333333 1 22
lowQualScore : 666666666 7777 0 3 7777 3 1 3 1 0000000 33 6666 33 66666 444 6666666 1 333 2 1 1 1 55555 5555 1 2 1111 5555 1 9999999999999999999999 1 0 3 0 77777 1 8888888 6666 1 1 99999 1 222222 1 3333 222 22 3333 5555555 3 888 22 333 2 777777777777777777777777777 55 1 11111111111 333 555555 77777777 1 5555555 222 00000000000000 0 9999999999999 1 3333 2 3 22 1 3 0 3 333 0 22 333 777777777777777 2 0 555555555555555555555 1 44 7777777777777777777777777777777777777777 3 6666 22 999999 44 333 333 666 5 1 222 44444 1 66666666 3333 0000000 22 1 333 1 22 0 33 444 0 2 0 9999 55
lowQualScore : ......... .... . . .... . . . . ....... .. .... .. ..... ... ....... . ... . . . . ..... .... . . .... .... . ...................... . . . . ..... . ....... .... . . ..... . ...... . .... ... .. .... ....... . ... .. ... . ........................... .. . ........... ... ...... ........ . ....... ... .............. . ............. . .... . . .. . . . . ... . .. ... ............... . . ..................... . .. ........................................ . .... .. ...... .. ... ... ... . . ... ..... . ........ .... ....... .. . ... . .. . .. ... . . . .... ..
lowQualScore : 000000000 7777 5 3 1111 6 0 6 0 0000000 99 1111 99 44444 777 2222222 8 222 0 8 0 8 55555 0000 7 7 5555 1111 8 5555555555555555555555 5 6 9 2 22222 8 8888888 4444 9 2 11111 7 333333 7 7777 999 33 5555 6666666 0 222 33 333 0 999999999999999999999999999 22 9 77777777777 222 222222 88888888 7 7777777 888 77777777777777 2 6666666666666 0 7777 4 1 55 7 5 5 5 000 2 44 222 555555555555555 4 5 444444444444444444444 8 33 6666666666666666666666666666666666666666 1 2222 88 555555 22 333 000 111 2 7 888 00000 6 22222222 4444 7777777 33 7 000 7 44 1 22 111 8 5 1 4444 88
consensus : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTCAAAAATCGATAGA----AAATCGGTCACTGACCACTTATCTTCGAACACTTCACTGTAAATCTAAAATAT-TAGTT----AAATTACAAAA-TTNTATTATTTTAAAG-GGACACATCGCNATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT-TA--GG---CCA-------A-A---ATA-ATATATCCGTTTCTGG-TTAGCCCC----T----AA-AAAA----TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---TTTTT-T-CA----CTCTCGAG----GTACTAGTAATGTTCAGAG-CAAGCCGATCATC----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---AAGATTCACTGTGCTGTTCT-GAATAACAA-N-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATT--CTC--------------TGTCTCTCTGGGCGGC-------------CATGTTNGATAT----CGTGCAGCACACACATTAGAATATT--CAAA-A-TCCA-CA---TTTCGTT--AGGTATAATG---CAGTG----TC--TG-T---GTAACGGAAATGATTTAGA-----TG-A--A--A-A--T-AA-A-TAACG--ATAA--GAAA--GTAATGT---TTTTG--A-------TTTT----TTTT--T------AA-TTTGG---AAAA---AAA---T-AGGGTC-GGCAGTA---AA-----GATTAAG-GACGGTC------GGCC----AACCGGAAACAAATG--G--TTT-T---TT-T--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGT----ATAAAAAA--ACAAATCCAAAGAAATATCATTTTATAT
Reference ( family-492 ) : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTCAAAAATCGATAGA----AAATCGGTCACTGACCACTTATCTTCGAACACTTCACTGTAAATCTAAAATAT-TAGTT----AAATTACAAAA-TTNTATTATTTTAAAG-GGACACATCGCNATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT-NA--GG---CCA-------A-A---ATA-ATATATCCGTTTCTGG-TTAGCCCN----T----AA-AANA----TAG---TG-TANAC-CA-----------C----GTATGATTGTCTTTT-C---TTTTT-T-CA----CTCTCGAG----GTACTAGTAATGTTCAGAG-CAAGCCGATCATC----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---AAGATTCACTGTACTGTTCT-GAATAACAA-N-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATT--CTC--------------TGTCTCTCTGGGCGGC-------------CATGTTNGATAT----CGTGCAGCACACACATTAGAATATT--CAAA-A-TCCA-CA---TTTCGTT--AGGTATAATG---CAGTG----TC--TG-T---GTAACGGAAATGATTTAGA-----TG-A--A--A-A--T-AA-A-TAACG--ATAA--GAAA--GTAATGN---TTTTG--A-------TNTT----TTTT--T------AA-TTTGG---AAAA---AAA---T-AGGGTC-GGCAGTA---AA-----GATTAAG-GACGGTC------GGCC----AACCGGAAACNNATA--G--TTT-T---TT-T--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGT----ATAAAAAA-TACAAATCCAAAGAAATATCATTTTATAT
gi|1 : ATCTCAAAAATCGATAGA----AATTCGATCACTTACCACTTATCTTCGAACACATCTCTGTAAATCTGAAATAT-TAGTT----AAATCACAAAA-TTGTATTATTCTAAAATGGACACATCGCTGTTTTAATACATTTTCATA-------TAAAGCAAAT--TCTAAC----A--TTACT-TA--GG---CCA-------A-A---GTA-ATATATCCGTTTCTGG-TTAGCCAA----T----AA-AAAA--------------ATA---A-----------C----GTATAATTATCTTTA-C---TTTTT-T-CA----CTGTCAAG----GTTCATGTAATGTTCAGGG-CAGACCGATCATT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAATTATATTATT----TAGGTACAT-TA---AATATTCACTGTGCTGTTCC-GAATAACAA-A-AA----------------------TA--A-G-----------CA---TT------T--GT----TAGGTAC-AG-------TATT--TTC--------------TGTCCCTCTGAGCGGC-------------CACGTTTGATAT----CGTGCAGCACACAGATTAGAATATT--CAAA-A-TCCA-TA---CTTGTTT--AGGTAAAATG---CAGTT----TT--TT-T---GTTACGGAAATGATTAAGA-----TG-A--A--A-A--G-TA-A-TAACA--ATTA--GGAA--ATAATGC---TTTTT--T-------TTTT----TTTT--TTA----AA-TTTGG---GAAA---AAA---T-AGGACA-GGCAGTA---AA-----TATAAAG-GACGGTC------AACCAACTAACCGGAAACTTAC---G--CCT-T---TT-T--T-GC--CT---TATCAAATATGAATTT-AAATACCTCAGT----ATCAAAAA--ACTAATCCAGAGAAATAACATTTTATAT
gi|10 : -A---ATA-AAATGTTCATATCTAGATGGGGCTC----T----AA-AAAA----AAG---GG-TAG-T-TA-----------G----GTAGGATT--------------TTT-T-C------TCTCAAA----ATACCATTAATGTCGAAAT-CAAGCTGATCATT----G-GT------TGTG-GAACTT---TGCT--TGT----TA-------ACCAAGTTATGTTACTGAGATA----TTT-TA---AAGATTCATTGTATTATTCT-GAATAACAG-T-AA----------------------TA--A-CAG---------TG---TT------TCAGTGATATCAGGGT-GG-------GGTTTACTTGATGGTATACGAGATGTCACTCTGGGCATT-------------TATGTTGGATAT----CG-GCAGCAAAGAAATAAGAGTATT--CTGA-A-TACA-GA---TTTTGTTTTAGGTATAATG---GAGTG----AC--CA-T---GTAATGGAAATCATTTAGA-----TG-A--A--C-A--A-AA-A----------AA--GACA-------------------A-------TATT----TTTT--T------AA-ATTGG---AAAA---AAA---T-AGGATC-AACAGTA---AA-----AATTAGG-AACAGTCTTAGTAGGTC----AACCAGAAACATTTT--T--TTT-TATATT-T--TTGC--CT---TATgttaaaacattttcacaggtacattcaaaactaacatgacttct
gi|11 : ggcttCA-------A-A---AAA-AT-TGTTTGTTTCTGG-TAAGCCTC----TGA--AA-AAAA----TAG---GT-TAGGT--A-----------T----GTAGGCTTTTTTTTT-T---TTTTT-T-TTTTTTCTCCCGAGACCTGTACTTTTAATGTTCAAAT-CAAG----TCATC----A-GT------TGTA-G----C---TGTA--TGT----TATATGTTAACCATGTTATATAATTGACATA---------A---AATATTCATTATCCTGTTCT-GAATAGCAA-T-AATAAAACTGTTTCAGTCCTATCATG--A-C-----------GA---CT------T--GTCTACTCGGAGC-AG-------AAT-----C--------------TGTCACTCTTGGTGGC-------------CATGTTAAATAT----CGTGCAGCAAACAAATTAGTGTATT--AAAA-ACTCAA-CA---TTTCGTT--AGGCATAATG---TAGTG----ACATTG-TAATGTGATGGAAAT--TTTA-A-----TG-A--A--C----C-AA-A--AACA--A-------------AAT-----TTTTAT-A-------TATT----TTTT--CG-----AA-ATTGA---AAAATAAAAA---TTAGGGTC-ACCAGTA---AA-----AATTAGG-GACAGTC------GGCT----AACTGGAAACAA--A--G--TTT-T---TT-T--Taacaccatataacataaa
gi|12 : gg---CCA-------A-A---ATATATATATTTATTTCTGG-TTGGCTCC----T----GGCAAAA----TAG---GG-TAGAT-AA----------------GTAAAATT----------------T-T-CC----CCCATGAG----ATACTAGTAATGTTCAAAC-CAAGCCAATCATC----G-GC------TGTA-G----T---TGTA--TGT----TT-------ACTTAGTTATATGTTTGAGATATATACAT-TA---AAGATTCATATTACTGTTCTGGAATAGCAACA-A-----------------------TA--A-CAATGTTTCAGTCA---TT------TC-AC----CTGGGTC-AG-------TACT--CTC--------------TGTCTCTCTGGACGGC-------------CATGTTGGATTC----CGTGCAACAAACAAATAAGACTATT--GAAA-A-CATA-CA---TTTCGTT--AGt
gi|12 : a----TC--CG-T---GCAAC--AAACAAATAAGACTAT-TG-A--A--A-ACAT-AC-A-TTTCG--TTAGCTGAAA--TT--TGT---TTTT-----------TTTC----TTTT--TG-----AA-ATTGG---GGAA---AAA---T-AGGATC-AGCAGTA---TA-----AGTTAAG-GACGGTC------GGCC----AACCGGAAAAAAAT---G--CAT-T---TT-T--T-GC--CTGACTAT-AAATAT--AATT-AAActgaaatttgttttttttctttttgaaattggggaaaaataggatcagcagtataagttaaggacggtcggccaaccggaaaaaaatgcattttttgcctgactataaatataattaaaa
gi|13 : accaaaatatatatatttatttctggttggctcctggcaaaatagggtagataagtaaaattttcccccatgagatactagtaatgttcaaaccaagccaatcatcggctgtagttgtatgtttacttagttatatgtttgagatatatacattaaagattcatattactgttctggaatagcaacaataacaatgtttcagtcatttcacctgggtcagtactctctgtctctctggacggccatgttggat-------A-A---ATA-AT-TAT--GTTTTCGG-TTAATCCC----T----GA-AAAA----TAG---GG-TATATACAATTTTCTTTCTC----TTTTGTTTGTCTTTT-----TATTT-T-CA------CCCGAT----GTTCTAGTGATGTTTATAG-CAAGTAAATCACCACCGG-GT------TGTA-A----C---TGTA--TGG----CA-------ATCAAGCTCTATTATTTAAATTGATACGT-TA---AAGATTTATTGTACTGTTAT-CATTAACACTT-A-----------------------TA--A-C-----------TT---TT------TCCATCAAATCAGGATGAGCTTTATTTATT--CTC--------------TGTCACTCTGGACGGC-------------GATATTGAATAT----CGTACAGCAAACA------AA-ATT-----A-A-TACA-CA---TTTCATA--AAGTAT-ATG---CAGCG----AC----------TAACAAAAAAAATTTATATATATTG-A--A--A-T--T-AG-A-AAAC----TAG--GAa
gi|14 : gA-------A-A---A-A-AGATGTTCATATCTGG-TCAGCC--------------AGAA----TAG---GG-TAGAT--A-----------G----GTAGG-----------C---TTTTT-TACA----TTGTCCAGAT--GTACATTTAATGTTCAAAT-CAAGTCAGTCATA----G-GT------TGTA-G----CCGCTGTA--TGC----TATATGGTAATCACCTTATATAAT-------GG-ACAT-AA---AAGATTCATTGTACTGTTCT-GAAAAGCAA-TTA-----------------------TA--A-A-----------GAATGTT------TCAGTCATATCAGGAC-AA-------TGTC--TGC--------------TG---CTCTGGGTGGC-------------CATGTTGGATAT----TGTGCAACAAACAATTTAGTATATT--AAAA-A-CTCAGCA---TTTCGTT--AGGCATAATG----------------TA-T---ATAATGAAAATCATTTcatgcagtaaaaaatacgaacggtcaacctaccagacataaaggtattttt
gi|14 : ---TTTTG--AAA-----TTTT----TTTT--TGTTGGAAA-TTTGA---AAAA---AAAAAAT-AAGGTTTGGCAGTA---AA-----AAATGGG-GACGGTT------GGCT----AACCAGAAGCAAAtatttttgttttttgaaatttttttttgttggaaatttgaaaaaaaaaaataaggtttggcagtaaaaaatggggacggttggctaaccagaagcaaa
gi|15 : aaaaaagatgttcatatctggtcagccagaatagggtagataggtaggcttttttacattgtccagatgtacatttaatgttcaaatcaagtcagtcataggttgtagccgctgtatgctatatggtaatcaccttatataatggacataaaagattcattgtactgttctgaaaagcaattataaagaatgtttcagtcatatcaggacaatgtctgctgctctgggtggccatgttggatattgtgcaacaaacaatttagtatattaaaaactcagcatttcgttaggcataatgtatataatgaaaatcattttatttttgttA-------A-A---A-A-ATATGTTCGTTTCTGG-TTAGCCCCCTGAT----AA-AA-A----TAG---GG-TAGGT--A-----------G----GTAT-----TTTTTT-C---GTTTTAT-TT----CTCCCGAG----TTACTATTTATGC-CTGATTCAAGTCAATCAT------------------A-G----T---TGTA--TGT----TA-------ACCATGTTATATAATT----TA--CACAT-AA---AAGAT
gi|15 : TAGAGTATT--CAAA-ACTCAA-CA---TTTCCTT--AGGCATAATG---TA------------------GTGAC-------ATT--------------------G--T-AATA-TAATG--------------GTAATCA---TTTTG--A-------TCATGAAATTTT--T------AA---------AAAA---AAA---T-AGCATT-TGCAATA---AA-----GA--AAGAGACGGTC------GGCT----AACCGTAAACAAATGT-G--TTT-T---TT-T--Tctgaatatcaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagagtattcaaaactcaacatttccttaggcataatgtagtgacattgtaatataatggtaatcattttgatcatgaaatttttaaaaaaaaatagcatttgcaataaagaaagagacggtcggctaaccgtaaacaaatgtgtttttttttt
gi|16 : aaaaaatatgttcgtttctggttagccccctgataaaaatagggtaggtaggtatttttttcgttttatttctcccgagttactatttatgcctgattcaagtcaatcatagttgtatgttaaccatgttatataatttacacataaaagatctgaatatcaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---TTTTT-T-CA----CTCTCGAG----ATACTAGTAATGTCCAGAG-CAAGTCGATCATT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACTAGGTAATATTGTTGAGATAGGTACAT-TG---AAGATTCACTGTGCTGTTCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TACGGGC-AG-------TATT--TTC--------------TGTCTCTCTGGGCGGC-------------CATGTTTGATAT----CTTGCAGCACACACATTAAAATATT--CAAA-T-TCCA-CA---TTTTGTT--AGGTATAATG---AAGTG----TC--TG-T---GTAATGGAAATGATTCAGA-----TGAA--A--A-A--T-AA-A-TAATA--ATAA--GTAA--GTTAAGT---TTTT-----------TATT----TTTT--T------AA-TTTAG---GAAA---AAA---T-AGTGTC-GACAGTT---AA-----GATTAAG-GACGTTC------AACC----AACCGGAAACTTATG--GCTTTT-T---TT-T--TAGC--CT---TATCAAAAATGAAATG-AAATAtt
gi|17 : t---TATA--TAT----TA-------ACCATGTTGCATAATTGACATA---------A---AAGATTCATCATACTGTTCT-GAATAGCAA-T-AATNNNNNNNN-------------NN--N-N-----------NN---NN------N--NN----NNNNNNN-NN-------NNNN--NNN--------------NNNNNNNNNNNNNNNN-------------NNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNTT--CAAATC-TCAA-CA---TGTCGTT--AGGCATAATGTTTCGGTA----ACATTG-TAATGTAATGGAAATCATTTTT------TG-----------------------G--ACAA--AAAA--GTC-TTC---TTTT-----------TTTT----TCTT--TGA----AA-TTTGA---AAAA---TAA---T-AGGATC-GGCATTA----------GGTTAGG-GACGATC------GTCT----AACCGGAAACAA--A--G--TTT-T---TT-T--T
gi|18 : atgtttaccttttcgtcatgtcgtaatttgtatgctgattacgttgtcaggccaacaaaactttcgtgtc-GT------TGTA-G----T---TGTA--TGT----TACATGTA-ACCAAGTTATATTATTTAGATAGGTATAT-TA---AATAATCACTGTGTTATTCT-AAATAACAA-T-A------------------------AGTA-C-----------CA---TT------T--GT----TTGAGGG-AG-------TATT--CTC--------------TGT-TCTCTAGGCGGT-------------CATATTTGATAT----CGTACAGTACACATATTAGAATATC--CAAG-A-TACA-CA---TTTTGTA--AGGTATTATG---CAGAC----TC--TT-T---GAAACGTAAATGTTTCAAA-----TG-A--A--A-A----AC-A-AAACG----------AA--ACAAT-----TTTT-----------TTTT----TTTT--T------AATTTTGG---GAAA---CAA---T-AGGGCC-GGCAGTA---AA-----GATTAAG-AACGGTC------AACC----AACCAGAAACAAAT---G--TTT-T---CG-T--TGGC--CT---TATCAAATATAAAATA-AAAT-CTTCAGT----GTAAAAAA--ACGATTCCATAGAAAtgt
gi|19 : TCCAAAAACTGATGGAAGTAAAGCAGAT---------GTATCTCAAAAATCGATAAC----AAATCAGCCACTGGCTACTT-TCTTCAAACACTTTACTGTAAATTTAAAATATATGTTT----AAAT-ACAAAA-TGTTATTATTTTAAAG-GGACACATTGCAATTTTATTACATTTTCACT-------CAAAGCAATT--TCTAAA----A--TTACT-AA--TA---ATATTAAATCA-A---ATA--TATATCCGTTTCTGG-TTAGCCCC----T----GA-AAAAAATGTAG---TG-TAGAC-CA-----------C----GTATTATTGTTTTTT-C---TTT-----------------------GTACTA------TTCAGAG-TAAGCCAATCATT----G-GT------T
gi|2 : tttatgttcgagtttttttcttcccTCCAAAATTGGATGGAAGTAATGTACAT---------GTATCTCAGAAGTCGATAGA----AAATCGATCACTGACCACTTTTCTTCGAACACTTCACTGTCAATCTAAATTAT-TAGTT----AAATTACGAAA-TTTTATTATTTTAAAG-GGATTCATCGCTATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT-AA--GG---CCA-------A-A---ATA-ATATATCCGTTTCTGG-TTAACTCG----T----AA-AATA----TAG---TG-TTTAC-CA-----------C----GTATGCTTGTCTTTT-C---TTTTT-TCCG----CTCTCGAG----GTACTAGTAATGTACAGGG-CAAGCCGATCGTT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACAAGGTTATATTATAAAGATAGATACGA-TG---AAGATTCACTGTGCTGTTCT-GAATAACAA-C-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATT--TTC--------------TGTCTCTCTGGGCGGC-------------CATGTTTTATAT----CTTACAGCACACACATTATAATATT--CAAA-A-CCCA-CG---TCTTGTT--AGGTATAATG---CAGTG----TC--TG-T---GTAACAAAAATGATTCAGA-----T--ACTA--A-A--T-AA-A-TAACG--ATAA--GAAA--GTAATGA---TTTTG--A-------TATG----TTTT--T------AA-TTTAG---AAAA---AAA---T-AGGGTA-GGCAGTA---AA-----TATTAAG-GACGTTC------AACC----AACCAGAAACGTATAGGG--TTTAT---TT-T--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGT----ATAAAAAACCCCAAATCCAATGAAATATCATTTTATAT
gi|20 : ----AA-AAAA----TAG---GG-TAG---------------------GTA-GGTT-TCTTC--C---TTTTT-T-TT----CTCCCGAG----GTGCTCTCAATGTTCAAAT-TGAGTGAATCATA----A-GA------GGTA-G----C---TGTA--TGT----TA----------TAGTTA----ACTGACATA---------A---AAGATTC-----ATTGTTCT-GAATAGCAA-
gi|21 : gaa------TGCA-G----C---TGTA--TGT----TA---------TATGTTATACAATTGACATA---------A---AAGATTTATTGCACTGTTCT-GAATAGCAATA-A-----------------------TA--A-A-----------AA---TTGTTGTCT--GC----TTGGGGT-AT-------TATT--CTttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgtattcaaaacattttgttagtcattatgtagtaacattgtaatgttatggaaatc
gi|21 : A-G-TAACATTATAAT-GAAA--ATCTCTT---TCTTGGAA-------TTTT----TTTT--TTTGA--AA-TTTGC---AAAA---AAAAATT-AGGGTC-GGCAGTA---A----------AAA-GACGGTC------AGCT----AACCGGAAACAAA-G--G--TTT-T---TT-TCATGGC--CT--------AATATGAAATT-gtcatactgtaaactcattatttcattaggcatataatcgtagtaacattataatgaaaatctctttcttggaatttttttttttgaaatttgcaaaaaaaaattagggtcggcagtaaaaagacggtcagctaaccggaaacaaaggtttttttcatggcctaatatgaaatttcatgatcaaaaa
gi|22 : tgcagctgtatgttatatgttatacaattgacataaaagatttattgcactgttctgaatagcaataataaaaattgttgtctgcttggggtattattctgtcatactgtaaactcattatttcattaggcatataatcgt-GC------TGTATG----T---TATA--TGT----GA-------ATCATGTTATAAAACTGA--------CAT--A---AAGATTCATTGTACTGTTCT-GAATAGCAA-T-AA----------------------TA--A--------------A----------------------------AA-------CGTT--GTC--------------TG-----CTTGGTGGC-------------CATATTGGAAAT----TGTACAGCAAACAAATGAGTGTATT--CAAA-A-GGCAACA---TTTCATT--AGGCATAATA---TGGTGACATTG--TGAT---GTAAAGGAAATCATTTTGA-----T--------------------CAACA--ACAA--AAAA----AAT--------TG--A-------AC-------------------AA---------AAAA---TAA---T-AGGGTC-GGCAGTA---AA-----AATTAGG-GGCGGTC------GGCT----AACAGGAAACAAA-G--G--TTG-T---TT-T--tcatgatcaaaaa
gi|23 : gtaCACTGACCATTTATCTTTGAACACTTCACTGTAAACCTAAAATAT-TAGTT----AGATTACAAAA-TTCTATTAGTTTAAAG-GGACACATTGCAATTTTAACACATTTTCTCT-------TAAAGGAATT--TCTAAA----A--T----------------A-------A-A---------ATATCCGTTTCTGG-TTA---CC----T----AA-AATAAGG-TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---CTTTT-T-CA----CTCTCGAG----GTACTAGTAATGTTCAGA
gi|24 : -A-TCTA-CA---TTTTGTT--AGGTATAATG---CAGTG----TC--TG-T---GGTACAGAAATGATTTAGA-----TG-G--A--A-A--A-AG-A-TAAC--------------------------------A-------TTTT----TTTT--T------AA-TTTGGGAAAAAA---AAA---C-AGGGTC-AGCAGTA---CA-----GATTATA-GATGGTC------A-CC----AACCGGAAGCAT-TG--G--TGT-G---TTGT--TTGT--CT---TATCAAATATAATATT-AAGTACATCAGA----ATAAAA----ACAAATGCAAAGAAATATCGTTTTGTATtccatatattgttaagcattttaacaggtacattca
gi|25 : gCAGTCACTGTCCATTTATCTTCGAACACTGCACTGTAAATATAAGATAT-AGGTT----AAATTACAAAA-TCGTATCATTTTAAAA-GGACATCTCGCAATTTTAACACATTTTCACT-------TATAGCAATT--TCTAAA----A--TGACT-TA--GG---CCA-------ATA---ATA-ATATATCCGTTTCTGG-TTAGTTCC----T----AA-AATAAAG-AAG---TG-TAGAC-CA-----------CGCCTGTATGATTGTCTTTT-C---CTTAT-T-CA----CTCTCGAG----GTACAAGTAATGTTttataagcattttcacaggtacattaaaa
gi|26 : -------TAAAGCAATT--TCTAAA----A--TTAAT-TG--GG---CGA-------A-A---ACA-A-ATGTCCGTTTCCGA-TTAGCTCC----T----GA-GTAA----T-----TC-TAGTC-CA-----------C----GTATGATTGTCTTTT-T---TTCTT-T-CA----------AG--------TAGTAATGTTCAGAG-CACGCCAATCATC----A-GTTGAACATGCA-G----T---TGTA--TGT----TG-------ACCAAGTTATATTA
gi|26 : -----------------------TA--ATC-----------CA---AT------T---T----TCAGTGC-AT-------TATT--TTC--------------TTTCTCTCTGGGCGGC-------------CATGTTGGATAT----TGGGCAGCACACGCATCAatccaattttcagtgcattattttctttctctctgggcggccatgttggatattgggcagcacacgcatca
gi|27 : taaagcaatttctaaaattaattgggcgaaaacaaatgtccgtttccgattagctcctgagtaattctagtccacgtatgattgtctttttttctttcaagtagtaatgttcagagcacgccaatcatcagttgaacatgcagttgtatgttgaccaagttatatAATT--TCTAAA----A--TTAAT-TG--GG---CGA-------A-A---ACA-A-ATGCCTGTTTCCGA-TTAGCTCC----T----GA-TTAA----T-----TC-TAGAC-TA-----------C----GTATGATTGTCTTTT-T---T-------------CTCTCCAG--------CAGTGATGTTCAGAG-CACGCAAATCATC----ATGTGAACA-TGCA-G----T---TGTA--TTT----TG-------ACCAAGTTATATTA
gi|27 : A--A-C-----------CA---AT------T---T----TCAGTGC-AG-------TATT--TTC--------------TTTCTCTCTGGGCGGC-------------CATGTTGGATAT----TGGGCAACACACGCAaaccaattttcagtgcagtattttctttctctctgggcggccatgttggatattgggcaacacacgca
gi|28 : aatttctaaaattaattgggcgaaaacaaatgcctgtttccgattagctcctgattaattctagactacgtatgattgtcttttttctctccagcagtgatgttcagagcacgcaaatcatcatgtgaacatgcagttgtattttgaccaagttatatta----TTGGGGC-AG-------AACT--CTT--------------TGTCACTCTTGGAGGC-------------AATGCTCGATAT----GATCCAGCAAACAAATTAAGA-GTTAGCAAA-T-TACA-CA---TTTCGTT--AGGTATAACG---AGGTG----AC--CG-T---GTCATGGAAATCATT
gi|29 : taaagatttattgataaataataaaatcttttcagttataccaggaagtgttctacA---AA-----G--TAAA-GACGGTC------AGTC----AACCGGAAACAAATGTTG--TTA-T---TT-T--TG-C--CT---TATCAAATAT-AAATTAAAATACATCCGT----TCAAATAA-AACATATACAAAGAAATATTATTTTATAT
gi|3 : TCCAAAAATTGATGTAAGTGTTGCACAT---------GTATCTCAGAAATCGATAGA----AGTTCGGTCACTGACCACTTATCTTCGAACACTTCACAGTTAATCTAAAATAT-TAG-T----AAATTACAACATTTTTATTA-TTTAAAG-GGACACATCGCTTTTTTAACACATTTTCACT-------TAAAGTAATT--TCTAAAAACTA--TAACTATAATAG---TCA-------A-A---TTA-ATATATACGTTTCTGG-TTAGCCCG----T----AA-AAAA----TA-----------------------------------GATTG----TT-T---TTATT-T-CA----CTTTCGAG----GTTCAAGTAATGTTCAGAG-CAAGCCTATCATT----G-GT------TGTA-G----T---TTTA--T--------------------GTTATATTATTGAGGTAGGTACAT-TA---CAGATTCACTGTACTGCTCT-GAATTACAA-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TCAGGGC-AG-------TATT--CAT--------------CGTCTCTAT--ACGGC-------------CTTGTTTGACAC----CGTACAGCACACACATTAGAATATT--CAAA-A-TCCA-CA---TTTTGTT--TAGTATAATT---CAGTA----T-------------------ATGAT---GA--------A--A--A-A--T-AA-A-CAACA--ATAA--GAAA--GTGATGgtttatgaatttccactgatacaatcaaaattatcatgacttc
gi|3 : ttctgtgtttgtgttgttttctcAA---AAA---T-AAA--C-AACAATA---AGAAAGTGATGTAG-AACGGTC------AGTC----AACCG-AAACTGATG--G--TTT-T---TT-T----AC--CT---TATCAAATATGAAATT-AAATACCTCAGT----A-AAAAAA-AACAAATCCAAAGAAATATCATTTCATATtagaacggtcagtcaaccgaaactgatggtttttttaccttatcaaatatgaaattaaatacctcagtaaaaaaaaacaaatccaaagaaatatcatttcatatgttcaagcattttccggacacatctattcaaaactaacatgactgca
gi|30 : ttctgtgtttgtgttgttttctctccaaaaattgatgtaagtgttgcacatgtatctcagaaatcgatagaagttcggtcactgaccacttatcttcgaacacttcacagttaatctaaaatattagtaaattacaacatttttattatttaaagggacacatcgcttttttaacacattttcacttaaagtaatttctaaaaactataactataatagtcaaattaatatatacgtttctggttagcccgtaaaaaatagattgtttttatttcactttcgaggttcaagtaatgttcagagcaagcctatcattggttgtagttttatgttatattattgaggtaggtacattacagattcactgtactgctctgaattacaaaataaccatttgttcagggcagtattcatcgtctctatacggccttgtttgacaccgtacagcacacacattagaatattcaaaatccacattttgtttagtataattcagtatatgatgAA-C-TCAA-CA---TTTCGTT--AGGCATAATG---gttcaagcattttccggacacatctattcaaaactaacatgactgca
gi|30 : ag-A-TAATG--TTAT--GAGATTGTAATGGGTTTTTTG--GGGGTTTTTTTT----TTTTGGT------AA-TTTGG---AGAA---AAA-----AAGGTC-AGCAGT-----------CATT----GGCAGTC------AGCT----AACTGTAAACAAA-A--A--TTT-T---TT-T--Tttatgagattgtaatgggttttttgggggttttttttttttggtaatttggagaaaaaaaggtcagcagtcattggcagtcagctaactgtaaacaaaaatttttttttt
gi|31 : agaactcaacatttcgttaggcCGGC-------------CATGTTGGATATATGTTGTGCAGTAAACACATTACAGTATT--CAAA-A-T--A-CAATTTTTCGTT--AGGTATAATA---CAGTG----AC-----T---GTAATGGAATTCGTTCTGA-----CG-GC-AGTA-A--T-AA-A-TAA-G--AT-A--TAAA--GTAGTAT---TGTTtt
gi|32 : -------A-A---ATA--TATGTTCGTTTCTGG-CTAGCCCC----TGAA-AA-AAAA----TAGGCTTGGTAG---------------------GTA-GGTTTTAATTT-G---TTTTC-T--A----C---CAAG----ATACTATTGATGTTTAAAT-CAAGTCAGTCATT----G-GT------TGTA-G----C---TGTA--TGT----TA-------
gi|33 : caaag---TC------T--GC----TTGGGGC-AG-------TAT----TC--------------TATCACTCTGAGGGGCTGGGGGTGGGAATCATGTTGGATAT----TGTGCAAAAAACAAATTAGTGTATT--tata
gi|34 : aaaaatagggtaggaaaaatgtttcagtcgtatcagtacattgA---AAA---C-AGGGTC-AGCAGTA---AA-----GATAAAG-GACGGTC------AATC----AACCGGAAACAAATGGTG--TTT-T---TT-T--TTGC--CT---TATC--ATA------C-AAATACCTCAGT----ATAAAAAA--ACA
gi|35 : TTGATGGAAGTAATGCACGT---------GTATCTCAAAAATCGAAAGC----AAATCGGTAACTGACCGTTTATCTTCGGACACTTCACTGTAAATCTAAAA
gi|36 : A---AA-----G--TAAA-GACGGTC------AGTC----AACCGGAAACAAATGTTG--TTA-T---TT-T--TG-C--CT---TATCAAATATGAAATA-AAATACATCCGTTCAAATAAAAc
gi|37 : TTCAAAAATTGATGGAAGCAATGCACAT---------GCAGCTCAAAAA
gi|39 : ttttgtggttgtgttttttcttccc---AAAA---AAA---T-AGAGTC-GGTAGAAGAAAA-----AAATAGG-GATGGTC------AGGT----AACCGGAAACAAA-A--G--TTgc
gi|4 : aaaTCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTAAAAAATTGATAGA----AAATCGGTCACTGAACACTTATCTCTGAACACTTTGCTGTAAATCTAGAATAT-TTGTT----AAATTACAAAA-TTGTATTATTTTAAAG-GGACATATCTCCATTTTATCACATTTTCACT-------TAAAGCAATT--TTTAAA----A--TTACT-AA--GG---CCA-------A-A---TTA-ATATATCCGTTTCTTG-TTAGCCCG----TAA--AA-AATA----TAG---TT-TATAC-CA-----------A----ATATGATTGTCTTTTCC---TTTTT-T-CA----CTCTCGAT----GTACTAGTAATGTTCAGAG-CAAGCCGATCATT----G-GGA-----TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---CAGATTCACTGTACTGATCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TG------T--AT----TCAGGGC-AG-------TATT--TTC--------------TGTCTCTCTGTGCGGC-------------CATGTTTGATAT----CGTACAACACACACATTAGAATATT--CAAA-A-TCCG-CA---TTTTGTT--AATTATAATG---CAATG-----C--TT-T---GTAACGGAAATGATTTAGA-----TGAA--A--A-A--T-AA-A-TAACA--GTAA--GAAA--GTAATGT---TTT----------------------------------------------AA---AAA---TCAGGGTC-GACTGTA---AA-----GATAAAG-TACGGTC------AACC----AACCGGAAACTTAT---G--TGT-T---TT-T--T-GC--CT---TATCAAATATGAAATT-AAACA
gi|41 : attgtgtttgtgtttttgttttattcccCA-------A-A---A---ATATGTTC-TTTCTGG-TTAACCCC----TG---AA-AAAA----TAG---GG-TA
gi|5 : aaTCCAAAAATTGATGGAAGAAATGCACATACAAATTGTGTATCTAAAAAATCGATAGA----AAATCGGCCACCGGCCACTTATCTTCCAACACTTCACTGTGAATCTAAAATAT-TAATCTAAAAAATTACgg
gi|5 : cgttttgtgtttgtgtattttctcctTTCCAACAC---TTCACTGTGAATCTAAAATA-TTAATCTAAA----AAATTACT-TA--GG---CCC-------A-A---ATC-ATATATCCGTTTCTGG-TTAGCCCG----T----AA-AAAA----AAG---TG-TATAC-CA-----------C----GTATAATTGTCTTTT-CTTTTTTTT-T-CA----CTGTCGAG----GTACTAGTAATGTTCAGAG-CA----------------------------A-G----T---TGTA--TGT----TG-------ACAAAGTTATATTACTAAAATAGGTATAT-TA---AAGATTCACTGTGCCGTTCT-GAATAAAAT-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG--------AAT--ATC--------------TGTCTCTCTGGGCGGC-------------CATGTTCGATAT----CGTGCAA-------ATTAGAATATT--CAAA-A-TCAA-CG---TTTCGT----------ATG---CATTG----TG--TG-T---GTAACGGGAATGTTTTAAA-----TGAA--A--A-A--T-AA-A-TAGCA--ATAA--GAAA--AAAATAT---TTTTG--ATT-----TTTT----TTTT--T------AA-TTTGG---TAAC---GAA---T-ATGGTC-GGTAGTA---AA-----AATTAAG-GACGGTC------AACC----AACCAGAAACTTAT---G--TTT-T---TT-T--TGGCTTTT---TATTAAATATGAAATT-AAATACCTTAGT----AT-AAAAA-TACAAATCCAAAGAAATATCATTTTATttaggcccaaatcatatatccgtttctggttagcccgtaaaaaaaagtgtataccacgtataattgtcttttctttttttttcactgtcgaggtactagtaatgttcagagcaagttgtatgttgacaaagttatattactaaaataggtatattaaagattcactgtgccgttctgaataaaataataaccatttgttcggggcagaatatctgtctctctgggcggccatgttcgatatcgtgcaaattagaatattcaaaatcaacgtttcgtatgcattgtgtgtgtaacgggaatgttttaaatgaaaaataaatagcaataagaaaaaaatatttttgatttttttttttaatttggtaacgaatatggtcggtagtaaaaattaaggacggtcaaccaaccagaaacttatgttttttttggctttttattaaatatgaaattaaataccttagtataaaaatacaaatccaaagaaatatcattttatgattggtatacgacatt
gi|6 : cgttttgtgtttgtgtattttctccttccaaaaattgatggaagaaatgcacatacaaattgtgtatctaaaaaatcgatagaaaatcggccaccggccacttatcTCCAAAAACTGATGAAAGTTATGCACAT---------GTATCTCAAAAATTGATCGATAACAAATCAGCCACTGGCTACTT-TCTTTGAACTTTTTACTATAAATTTAAAATAT-ATGTT----TAATTACAAAA-TGTTATTATTTTAAAG-GGACACATTGCAATTTTATTACATTTTCACT-------AAAAGCAATT--TCTAAA----A--TTATT-TA--TAATATTA-------A-ATCAATT-ATATATCCGTTTCTGG-TTAGCCCG----TGAAAAA-AATA----TAA---TG-TAGAC-CA-----------C----GTATTATTGTTTTTT-T---TCTTT-G-TT----TTTCCGAT----GTAATAGTACTATTCAGAG-CAAGCCAATCATT----G-GT------TGTA-G----T---TGTA--TGG----TA-------ACCAAGTTATATTATTGAGATAGGTATAT-TA---ATTATTTACTGTGCTGTTCT-TAATAACAA-T-------------------------TAGTA-C-----------CA---TT------T--GT----TCGGAAA-AG-------TATT--CTC--------------TGT-TCTCTAGGCGGC-------------CATATTTGATAT----CGTACAGTACACCCATTAGACTATT--CAAA-A-TACA-CA---TTT-GTT--AGGTATGATG---CAGAC----TC--TT-T---GAAACGGAAATGTTGCAGG-----TG-A--A--AGA--T-CA-A--AACG--A-------------AACAC---TT---------------TT----TTTT--T------AA-TTTGG---GAAA---CAA---T-AGGGCC-GGCAGTA---AA-----AATTAAG-AACGGTC------AACT----AACCAGAAGCAAAT---G--TTT-T---CG-T--TGGC--CT---TATCAAATATAAAATT-AAAgattggtatacgacatt
gi|7 : cccTGATGGAAGTAATGCACAT---------GTATCTCATA--TCGATAAA----AAA-AGGTCACTTACCACTTATCTTCGTACACTTCAATGTAAATCTTAGATAT-TAGTT----AAAGTACAAAA-TTTTATTATTTTAAAG-GGACACATCGCTATTTTAACCCATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT-TA--GG---CCT-------A-A---ATA-ATATACCCGTTTCTGG-TTAGCCCG----TA---AA-AAAA----TAG---TG-TATAC-CA-----------C----GTATGATTG--TTTT-C---TTTTT-T-TT----CTCCCGAG----GTAGTAGTAATGTTCAGAA-TAAGCCGATCATT----G-GT------TGTA-G----T---TTTG--TGT----TA-------ATCAAGTTATATTATTGAAATAGGTACATCTAATTAAGATTCACTGTGCTGTTCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TCAGGGC-AG-------TGTT--CTA--------------TGTGTCTCTGGGCGGC-------------CGGGTTTGATAT--------------ACACATTAGAATATT--CAAA-A-TCCA-CA---TTTTGTT--AGGTAAAATG---TAGTG----GC--TG-T---GTAACGGATATGGTTTGAA-----T--A--A--A-A--TAAA-A-TAAAA--ACAA--GAAA--ATAATGT---TTTTG--A-------TTTTA---TTTT--T------AA-TTTGG---AAAA---AAA---T-ACAGTC-GGCAGTA---AA-----GATTAAG-GATGGTC------AACC----AACCGGAA------------TTT-T---TT-T--Ta
gi|8 : ATCTCAAAAATCGATAGA----AATTCGATCACTGACCACTTATCTTCGAACACTTCTCTGTATATCTAAAATAT-AAGTT----AAATGA-AAAA-TTCTATTATTTTAAAG-GGACACATTGCGATTTTAATACATTTTCACT-------AAAAGCAATT--TCTAAA----A--TTAC---------------------------ACA-A-----CCATTTCTTG-ATAGCCAG----T----AA-AAGAA---TAG---TG-TAGAC-CA-----------C----ATAT-----TCTTTT--------TT-T-CA----CTCTCGAG----GTGCTAGTAATGTTCAGAG-CAAGCCGATCATT----G-GT------TGTA-G----T---TGTAGTTGTATCTTA-------ACCAAGTTAGGTTATTGAGATAGGTACAT-TA---AAGATTCACTGTGCTGTTCT-GAATAACAA-A-AA----------------------CA--A-A-----------CA---CT------T--GT----TCAGGGC-AG-------TATT--CTC--------------TGTATCTCTGAGTGAC-------------CATGTTTGATAT----CATAAAGCACACACATTAGAATAC---CAAA-A-TCCA-CA---TTTTGTT--AAGTATAATG---CAGTG----TT--TA-T---GTAACAGAAATAATTTAGA-----TG-A--A--A-A--A-AA-AATAAAA--ATAA--GAAA--GTAATGT---TTTTG--A-------TTTT----TTTT--T------AA-TTTGG---GAAA---AAA---T-GGGGTC-GGCAGTT---AA-----GATTAAG-GACAGTC------AACC----AACCCAAAACTTAT---G--CTT-T---TT-T----GC--CT---TATCAAATATGAAATT-AAATAttt
gi|9 : TCCAAAAATTGATGGAAGTAATGCACAT---------ATATCTAAAAGATTGATAGA----AAATCGGTCACTGAACACTTATCTCTGAACACTTTGCTGTAAATCTAGGATAT-TTGTT----AAATTACAAAA-CTGTATTATTTTTAAG-GGACATATCGCCATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT-AA--GG---CCA-------A-A---TTA-ATACATCCGTTTCTTG-TTAGCCCT----T----AA-AAAA----T
gi|9 : tcccAATGTTCAGAG-CAAGCCGATCATT----G-GGA-----TG-A-G----G---TGTG--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---CAGATTCACTGTACTGATCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TG------T--AT----TCAGGGC-AG-------TATT--TTT--------------TGTCTCTCTGTGCGGC-------------CATGTTTTATAT----CGTACAGCACACACATTAGAATATT--CAAA-A-TCCG-CA---TTTTGTT--AATTATACTT---CAATG-----C--TT-T---GTAACGGAAATGATTTAGA-----TGAA--A--A-A--T-AA-A-TAACA--ATAA--GAAA--GTAATG----TTTTG--------------------------------------------AA---AAA---TCAGGGTC-GCTTGTA---AA-----GATAAAG-TACAGTC------AACC----ATCCGGAAATTTAT---G--TGT-T---TT-T--T-GC--TT---TATCAAATATGAAATT-AAATACgttcagagcaagccgatcattgggatgaggtgtgtgttaaccaagttatattattgagataggtacattacagattcactgtactgatctgaataacaaaataaccatgtattcagggcagtattttttgtctctctgtgcggccatgttttatatcgtacagcacacacattagaatattcaaaatccgcattttgttaattatacttcaatgctttgtaacggaaatgatttagatgaaaaataaataacaataagaaagtaatgttttgaaaaatcagggtcgcttgtaaagataaagtacagtcaaccatccggaaatttatgtgttttttgctttatcaaatatgaaattaaatac
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): ATTAAGCACTATTGGAATTTCACATTCATTTTAAATTTCTTGCGGGACAACTCGTTTCCTAAGG
Unaligned ( gi|40 ): CAAAAAAATATGTGCCTTACTTGTTGGCCCCTGAAAAAAATCGAGTAGGTAAGT
Unaligned ( gi|42 ): TGCGAGGGGGGTTGGCCTCAGAATAAATTAGGGCTGTCTAAAAAA
Unaligned ( gi|43 ): TATCATCATTTTAAATGTTTTAGCATTTTCACAGCTACATTAAAA
Alignments
lowQualScore : 111111111 1111111 111111111111 111 111111111111111111111 111111 1111111 333333333333333333333333333 11111111111 11111111 11111111111111 111111111111111 111111111111111111111 2222222222222 111111 111111
lowQualScore : 666666666 7777 0 3 7777 3 1 3 1 0000000 33 6666 33 333333333333 444 1 55555 1 0 1 0 333 1 444 3 22 9999 5555 1 666666666666666666666 1 0 3 0 77777 1 1 888888 6666 1 1 99999 1 222222 1 3333 222 22 3333 5555555 3 888 22 333 0 2 777777777777777777777777777 55 1 11111111111 333 555555 77777777 1 5555555 22 00000000000000 0 9999999999999 1 3333 2 3 22 1 5 1 333 0 22 333 777777777777777 2 0 555555555555555555555 1 44 999999999 66666666666 7777777777777 6666 22 666666 33 333 222 555 5 1 222 33333 1 7777777 3333 11 999999 22 1 1 222 9999 33 444 0 2 0 8 66
lowQualScore : ......... .... . . .... . . . . ....... .. .... .. ............ ... . ..... . . . . ... . ... . .. .... .... . ..................... . . . . ..... . . ...... .... . . ..... . ...... . .... ... .. .... ....... . ... .. ... . . ........................... .. . ........... ... ...... ........ . ....... .. .............. . ............. . .... . . .. . . . ... . .. ... ............... . . ..................... . .. ......... ........... ............. .... .. ...... .. ... ... ... . . ... ..... . ....... .... .. ...... .. . . ... .... .. ... . . . . ..
lowQualScore : 000000000 7777 5 3 1111 6 0 6 0 0000000 99 1111 99 777777777777 777 7 00000 7 6 7 5 111 7 666 3 33 4444 0000 7 777777777777777777777 5 6 9 2 22222 8 8 888888 4444 9 2 11111 7 333333 7 7777 999 33 5555 6666666 0 222 33 333 5 0 999999999999999999999999999 22 9 77777777777 222 222222 88888888 7 7777777 44 77777777777777 2 6666666666666 0 7777 4 1 55 7 2 7 000 2 44 222 555555555555555 4 5 444444444444444444444 8 33 777777777 99999999999 6666666666666 2222 88 777777 66 222 999 888 0 7 777 88888 5 4444444 3333 99 111111 33 7 7 999 4444 22 111 8 5 1 9 11
consensus : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTCAAAAATCGATAGA----AAATCGGTCACTGACCACTTATCTTCGAACACTTCACTGTAAATCTAAAATAT-TAGTT----AAATTACAAAA-TTNTATTATTTTAAAG-GGACACATCGCNATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------TA--GG---CCAA-A---ATA-ATATATCCGTTTCTGG-TTAGCCCCT---A-A---AA-A--A----TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---TTTTT-T-C-A----CTCTCGAG----GTACTAGTAATGTTCAGAG-CAAGCCGATCATC----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---AAGATTCACTGTGCTGTTCT-GAATAACAA-N-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATT--CTC--------------TGTCTCTCTGGGCGGC-------------CATGTTNGATAT----CGTGCAGCACACACATTAGAATATT--CAAA-A-TCCA-CA---TTTCGTT--AGGTATAATG---CAGTG----TC--TG-T---GTAACGGAAATGATTTAGA-----TG-A--A--A-A--T-AA-A-TAACG--ATAA--GAAA--GTAATG---TTTTTG--A-------T-TTT----TTTT--T------AA-TTTGG---AAAA---AAA---T-AGGGTC-GGCAGTA---AA-----GATTAAG-GACGGTC------GGCC----AACCGGAAACAAAT--G--G--T-TT-T---TTT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGTATAAA-AAA--ACAAATCCAAAGAAATATCATTTTATAT
Reference ( family-492 ) : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTCAAAAATCGATAGA----AAATCGGTCACTGACCACTTATCTTCGAACACTTCACTGTAAATCTAAAATAT-TAGTT----AAATTACAAAA-TTNTATTATTTTAAAG-GGACACATCGCNATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------TA--GG---CCAA-A---ATA-ATATATCCGTTTCTGG-TTAGCCCCT---A-A---AA-A--A----TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---TTTTT-T-C-A----CTCTCGAG----GTACTAGTAATGTTCAGAG-CAAGCCGATCATC----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---AAGATTCACTGTGCTGTTCT-GAATAACAA-N-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATT--CTC--------------TGTCTCTCTGGGCGGC-------------CATGTTNGATAT----CGTGCAGCACACACATTAGAATATT--CAAA-A-TCCA-CA---TTTCGTT--AGGTATAATG---CAGTG----TC--TG-T---GTAACGGAAATGATTTAGA-----TG-A--A--A-A--T-AA-A-TAACG--ATAA--GAAA--GTAATG---TTTTTG--A-------T-TTT----TTTT--T------AA-TTTGG---AAAA---AAA---T-AGGGTC-GGCAGTA---AA-----GATTAAG-GACGGTC------GGCC----AACCGGAAACAAAT--G--G--T-TT-T---TTT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGTATAAA-AAA--ACAAATCCAAAGAAATATCATTTTATAT
gi|1 : ATCTCAAAAATCGATAGA----AATTCGATCACTTACCACTTATCTTCGAACACATCTCTGTAAATCTGAAATAT-TAGTT----AAATCACAAAA-TTGTATTATTCTAAAATGGACACATCGCTGTTTTAATACATTTTCATA-------TAAAGCAAAT--TCTAAC----A--TTACT--------TA--GG---CCAA-A---GTA-ATATATCCGTTTCTGG-TTAGCCAAT---A-A---AA-A--A-----------A-TA-----A-----------C----GTATAATTATCTTTA-C---TTTTT-T-C-A----CTGTCAAG----GTTCATGTAATGTTCAGGG-CAGACCGATCATT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAATTATATTATT----TAGGTACAT-TA---AATATTCACTGTGCTGTTCC-GAATAACAA-A-AA----------------------TA--A-G-----------CA---TT------T--GT----TAGGTAC-AG-------TATT--TTC--------------TGTCCCTCTGAGCGGC-------------CACGTTTGATAT----CGTGCAGCACACAGATTAGAATATT--CAAA-A-TCCA-TA---CTTGTTT--AGGTAAAATG---CAGTT----TT--TT-T---GTTACGGAAATGATTAAGA-----TG-A--A--A-A--G-TA-A-TAACA--ATTA--GGAA--ATAATG---CTTTTT--T-------T-TTT----TTTT--TTA----AA-TTTGG---GAAA---AAA---T-AGGACA-GGCAGTA---AA-----TATAAAG-GACGGTC------AACCAACTAACCGGAAACTTAC--G--C--C-TT-T---TTT----GC--CT---TATCAAATATGAATTT-AAATACCTCAGTATCAA-AAA--ACTAATCCAGAGAAATAACATTTTATAT
gi|10 : -A---ATA-AAATGTTCATATCTAGATGGGGCTCT---A-A---AA-A--A----AAG---GG-TAG-T-TA-----------G----GTAGGATT--------------TTT-T-C-------TCTCAAA----ATACCATTAATGTCGAAAT-CAAGCTGATCATT----G-GT------TGTG-GAACTT---TGCT--TGT----TA-------ACCAAGTTATGTTACTGAGATA----TTT-TA---AAGATTCATTGTATTATTCT-GAATAACAG-T-AA----------------------TA--A-CAG---------TG---TT------TCAGTGATATCAGGGT-GG-------GGTTTACTTGATGGTATACGAGATGTCACTCTGGGCATT-------------TATGTTGGATAT----CG-GCAGCAAAGAAATAAGAGTATT--CTGA-A-TACA-GA---TTTTGTTTTAGGTATAATG---GAGTG----AC--CA-T---GTAATGGAAATCATTTAGA-----TG-A--A--C-A--A-AA-A----------AA--GACA--ATA-------------------------TT----TTTT--T------AA-ATTGG---AAAA---AAA---T-AGGATC-AACAGTA---AA-----AATTAGG-AACAGTCTTAGTAGGTC----AACCAGAAACATTT--T--T--T-TT-TATATTT--TTGC--CT---TATgttaaaacattttcacaggtacattcaaaactaacatgacttct
gi|11 : ggcttCAA-A---AAA-AT-TGTTTGTTTCTGG-TAAGCCTCTGA-A-A---AA-A--A----TAG---GT-TAGGT--A-----------T----GTAGGCTTTTTTTTT-T---TTTTT-T-T-TTTTTCTCCCGAGACCTGTACTTTTAATGTTCAAAT-CAAG----TCATC----A-GT------TGTA-G----C---TGTA--TGT----TATATGTTAACCATGTTATATAATTGACATA---------A---AATATTCATTATCCTGTTCT-GAATAGCAA-T-AATAAAACTGTTTCAGTCCTATCATG--A-C-----------GA---CT------T--GTCTACTCGGAGC-AG-------AAT-----C--------------TGTCACTCTTGGTGGC-------------CATGTTAAATAT----CGTGCAGCAAACAAATTAGTGTATT--AAAA-ACTCAA-CA---TTTCGTT--AGGCATAATG---TAGTG----ACATTG-TAATGTGATGGAAAT--TTTA-A-----TG-A--A--C----C-AA-A--AACA--A-------------AATT---TTTAT---A-------TATTT----TTTC--G------AA-ATTGA---AAAATAAAAA---TTAGGGTC-ACCAGTA---AA-----AATTAGG-GACAGTC------GGCT----AACTGGAAACAAA------G--T-TT-T---TTT--Taacaccatataacataaa
gi|12 : gg---CCAA-A---ATATATATATTTATTTCTGG-TTGGCTCCT---G-GC--AA-A--A----TAG---GG-TAGAT-AA----------------GTAAAATT----------------T-T-C-C----CCCATGAG----ATACTAGTAATGTTCAAAC-CAAGCCAATCATC----G-GC------TGTA-G----T---TGTA--TGT----TT-------ACTTAGTTATATGTTTGAGATATATACAT-TA---AAGATTCATATTACTGTTCTGGAATAGCAACA-A-----------------------TA--A-CAATGTTTCAGTCA---TT------TC-AC----CTGGGTC-AG-------TACT--CTC--------------TGTCTCTCTGGACGGC-------------CATGTTGGATTC----CGTGCAACAAACAAATAAGACTATT--GAAA-A-CATA-CA---TTTCGTT--AGt
gi|12 : a----TC--CG-T---GCAAC--AAACAAATAAGACTAT-TG-A--A--A-ACAT-AC-A-TTTCG--TTAGCTGAAA--TT--TG---TTTTT-----------T-TTC----TTTT--TG-----AA-ATTGG---GGAA---AAA---T-AGGATC-AGCAGTA---TA-----AGTTAAG-GACGGTC------GGCC----AACCGGAAAAAAAT--G--C--A-TT-T---TTT----GC--CTGACTAT-AAATAT--AATT-AAActgaaatttgttttttttctttttgaaattggggaaaaataggatcagcagtataagttaaggacggtcggccaaccggaaaaaaatgcattttttgcctgactataaatataattaaaa
gi|13 : accaaaatatatatatttatttctggttggctcctggcaaaatagggtagataagtaaaattttcccccatgagatactagtaatgttcaaaccaagccaatcatcggctgtagttgtatgtttacttagttatatgtttgagatatatacattaaagattcatattactgttctggaatagcaacaataacaatgtttcagtcatttcacctgggtcagtactctctgtctctctggacggccatgttggatA-A---ATA-AT-TAT--GTTTTCGG-TTAATCCCT---G-A---AA-A--A----TAG---GG-TATATACAATTTTCTTTCTC----TTTTGTTTGTCTTTT-----TATTT-T-C-A------CCCGAT----GTTCTAGTGATGTTTATAG-CAAGTAAATCACCACCGG-GT------TGTA-A----C---TGTA--TGG----CA-------ATCAAGCTCTATTATTTAAATTGATACGT-TA---AAGATTTATTGTACTGTTAT-CATTAACACTT-A-----------------------TA--A-C-----------TT---TT------TCCATCAAATCAGGATGAGCTTTATTTATT--CTC--------------TGTCACTCTGGACGGC-------------GATATTGAATAT----CGTACAGCAAACA------AA-ATT-----A-A-TACA-CA---TTTCATA--AAGTAT-ATG---CAGCG----AC----------TAACAAAAAAAATTTATATATATTG-A--A--A-T--T-AG-A-AAAC----TAG--GAa
gi|13 : g------AA-TT------AGAA---AAC---T-AGGACA-TGCAGTA---AA-----AAATACG-AACGGTC------AACC----TACCAGACATAAA---G--G--T-AT-T---TTT--catgcagtaaaaaatacgaacggtcaacctaccagacataaaggtattttt
gi|14 : gaaataattatgttttcggttaatccctgaaaaatagggtatatacaattttctttctcttttgtttgtctttttattttcacccgatgttctagtgatgtttatagcaagtaaatcaccaccgggttgtaactgtatggcaatcaagctctattatttaaattgatacgttaaagatttattgtactgttatcattaacacttataactttttccatcaaatcaggatgagctttatttattctctgtcactctggacggcgatattgaatatcgtacagcaaacaaaattaatacacatttcataaagtatatgcagcgactaacaaaaaaaatttatatatattgaAA-A---A-A-AGATGTTCATATCTGG-TCAGCC------------AG-A--A----TAG---GG-TAGAT--A-----------G----GTAGG-----------C---TTTTT-TAC-A----TTGTCCAGAT--GTACATTTAATGTTCAAAT-CAAGTCAGTCATA----G-GT------TGTA-G----CCGCTGTA--TGC----TATATGGTAATCACCTTATATAAT-------GG-ACAT-AA---AAGATTCATTGTACTGTTCT-GAAAAGCAA-TTA-----------------------TA--A-A-----------GAATGTT------TCAGTCATATCAGGAC-AA-------TGTC--TGC--------------TG---CTCTGGGTGGC-------------CATGTTGGATAT----TGTGCAACAAACAATTTAGTATATT--AAAA-A-CTCAGCA---TTTCGTT--AGGCATAATG----------------TA-T---ATAATGAAAATCATTT
gi|14 : ---TTTTTG--AAA-----T-TTT----TTTT--TGTTGGAAA-TTTGA---AAAA---AAAAAAT-AAGGTTTGGCAGTA---AA-----AAATGGG-GACGGTT------GGCT----AACCAGAAGCAAAtatttttgttttttgaaatttttttttgttggaaatttgaaaaaaaaaaataaggtttggcagtaaaaaatggggacggttggctaaccagaagcaaa
gi|15 : aaaaaagatgttcatatctggtcagccagaatagggtagataggtaggcttttttacattgtccagatgtacatttaatgttcaaatcaagtcagtcataggttgtagccgctgtatgctatatggtaatcaccttatataatggacataaaagattcattgtactgttctgaaaagcaattataaagaatgtttcagtcatatcaggacaatgtctgctgctctgggtggccatgttggatattgtgcaacaaacaatttagtatattaaaaactcagcatttcgttaggcataatgtatataatgaaaatcattttatttttgtAA-A---A-A-ATATGTTCGTTTCTGG-TTAGCCCCCTG-ATA---AA-A--A----TAG---GG-TAGGT--A-----------G----GTAT-----TTTTTT-C---GTTTTAT-T-T----CTCCCGAG----TTACTATTTATGC-CTGATTCAAGTCAATCAT------------------A-G----T---TGTA--TGT----TA-------ACCATGTTATATAATT----TA--CACAT-AA---AAGAT
gi|15 : TAGAGTATT--CAAA-ACTCAA-CA---TTTCCTT--AGGCATAATG---TA------------------GTGAC-------ATT--------------------G--T-AATA-TAATG--------------GTAATC---ATTTTG--A-------T-CATGAAATTTT--T------AA---------AAAA---AAA---T-AGCATT-TGCAATA---AA-----GA--AAGAGACGGTC------GGCT----AACCGTAAACAAAT--GT-G--T-TT-T---TTT--Tctgaatatcaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagagtattcaaaactcaacatttccttaggcataatgtagtgacattgtaatataatggtaatcattttgatcatgaaatttttaaaaaaaaatagcatttgcaataaagaaagagacggtcggctaaccgtaaacaaatgtgtttttttttt
gi|16 : aaaaaatatgttcgtttctggttagccccctgataaaaatagggtaggtaggtatttttttcgttttatttctcccgagttactatttatgcctgattcaagtcaatcatagttgtatgttaaccatgttatataatttacacataaaagatctgaatatcaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---TTTTT-T-C-A----CTCTCGAG----ATACTAGTAATGTCCAGAG-CAAGTCGATCATT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACTAGGTAATATTGTTGAGATAGGTACAT-TG---AAGATTCACTGTGCTGTTCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TACGGGC-AG-------TATT--TTC--------------TGTCTCTCTGGGCGGC-------------CATGTTTGATAT----CTTGCAGCACACACATTAAAATATT--CAAA-T-TCCA-CA---TTTTGTT--AGGTATAATG---AAGTG----TC--TG-T---GTAATGGAAATGATTCAGA-----TGAA--A--A-A--T-AA-A-TAATA--ATAA--GTAA--GTTAAG---TTTTTT--A----------TT----TTTT--T------AA-TTTAG---GAAA---AAA---T-AGTGTC-GACAGTT---AA-----GATTAAG-GACGTTC------AACC----AACCGGAAACTTAT--G--GCTT-TT-T---TTT--TAGC--CT---TATCAAAAATGAAATG-AAATAtt
gi|17 : t---TATA--TAT----TA-------ACCATGTTGCATAATTGACATA---------A---AAGATTCATCATACTGTTCT-GAATAGCAA-T-AATNNNNNNNN-------------NN--N-N-----------NN---NN------N--NN----NNNNNNN-NN-------NNNN--NNN--------------NNNNNNNNNNNNNNNN-------------NNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNTT--CAAATC-TCAA-CA---TGTCGTT--AGGCATAATGTTTCGGTA----ACATTG-TAATGTAATGGAAATCATTTTT------TG-----------------------G--ACAA--AAAA--GTCTTC---TTTTT-------------TTT----TCTT--TGA----AA-TTTGA---AAAA---TAA---T-AGGATC-GGCATTA----------GGTTAGG-GACGATC------GTCT----AACCGGAAACAAA---G--T--T-TT-T---TTT--TG
gi|18 : atgtttaccttttcgtcatgtcgtaatttgtatgctgattacgttgtcaggccaacaaaactttcgtgtc-GT------TGTA-G----T---TGTA--TGT----TACATGTA-ACCAAGTTATATTATTTAGATAGGTATAT-TA---AATAATCACTGTGTTATTCT-AAATAACAA-T-A------------------------AGTA-C-----------CA---TT------T--GT----TTGAGGG-AG-------TATT--CTC--------------TGT-TCTCTAGGCGGT-------------CATATTTGATAT----CGTACAGTACACATATTAGAATATC--CAAG-A-TACA-CA---TTTTGTA--AGGTATTATG---CAGAC----TC--TT-T---GAAACGTAAATGTTTCAAA-----TG-A--A--A-A----AC-A-AAACG--A-AA--CAA------------TTTTT-----------T-TTT----TTTT--T------AATTTTGG---GAAA---CAA---T-AGGGCC-GGCAGTA---AA-----GATTAAG-AACGGTC------AACC----AACCAGAAACAAAT-----G--T-TT-T---CGT--TGGC--CT---TATCAAATATAAAATA-AAAT-CTTCAGTGTAAA-AAA--ACGATTCCATAGAAAt
gi|19 : TCCAAAAACTGATGGAAGTAAAGCAGAT---------GTATCTCAAAAATCGATAAC----AAATCAGCCACTGGCTACTT-TCTTCAAACACTTTACTGTAAATTTAAAATATATGTTT----AAAT-ACAAAA-TGTTATTATTTTAAAG-GGACACATTGCAATTTTATTACATTTTCACT-------CAAAGCAATT--TCTAAA----A--TTACTAATAATATTA--AA---TCAA-A----TA--TATATCCGTTTCTGG-TTAGCCCCT---G-A---AA-A--AAATGTAG---TG-TAGAC-CA-----------C----GTATTATTGTTTTTT-C---TTT------------------------GTACTA------TTCAGAG-TAAGCCAATCATT----G-GT------T
gi|2 : tttatgttcgagtttttttcttcccTCCAAAATTGGATGGAAGTAATGTACAT---------GTATCTCAGAAGTCGATAGA----AAATCGATCACTGACCACTTTTCTTCGAACACTTCACTGTCAATCTAAATTAT-TAGTT----AAATTACGAAA-TTTTATTATTTTAAAG-GGATTCATCGCTATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------AA--GG---CCAA-A---ATA-ATATATCCGTTTCTGG-TTAACTCGT---A-A---AA-T--A----TAG---TG-TTTAC-CA-----------C----GTATGCTTGTCTTTT-C---TTTTT-T-CCG----CTCTCGAG----GTACTAGTAATGTACAGGG-CAAGCCGATCGTT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACAAGGTTATATTATAAAGATAGATACGA-TG---AAGATTCACTGTGCTGTTCT-GAATAACAA-C-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATT--TTC--------------TGTCTCTCTGGGCGGC-------------CATGTTTTATAT----CTTACAGCACACACATTATAATATT--CAAA-A-CCCA-CG---TCTTGTT--AGGTATAATG---CAGTG----TC--TG-T---GTAACAAAAATGATTCAGA-----T--ACTA--A-A--T-AA-A-TAACG--ATAA--GAAA--GTAATG---ATTTTG--A-------T-ATG----TTTT--T------AA-TTTAG---AAAA---AAA---T-AGGGTA-GGCAGTA---AA-----TATTAAG-GACGTTC------AACC----AACCAGAAACGTATAGG--G--T-TTAT---TTT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGTATAAA-AAACCCCAAATCCAATGAAATATCATTTTATAT
gi|20 : ---A-A---AA-A--A----TAG---GG-TAG---------------------GTA-GGTT-TCTTC--C---TTTTT-T-T-T----CTCCCGAG----GTGCTCTCAATGTTCAAAT-TGAGTGAATCATA----A-GA------GGTA-G----C---TGTA--TGT----TA----------TAGTTA----ACTGACATA---------A---AAGATTCA-----TTGTTCT-GAATAGCAA-
gi|21 : gaa------TGCA-G----C---TGTA--TGT----TA---------TATGTTATACAATTGACATA---------A---AAGATTTATTGCACTGTTCT-GAATAGCAATA-A-----------------------TA--A-A-----------AA---TTGTTGTCT--GC----TTGGGGT-AT-------TATT--CTttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgtattcaaaacattttgttagtcattatgtagtaacattgtaatgttatggaaatc
gi|21 : A-G-TAACATTATAAT-GAAA--ATCTCT---TTCTTGGAA-------T-TTT----TTTT--TTTGA--AA-TTTGC---AAAA---AAAAATT-AGGGTC-GGCAGTA---A----------AAA-GACGGTC------AGCT----AACCGGAAACAAA---G--G--T-TT-T---TTTCATGGC--CT--------AATATGAAATT-gtcatactgtaaactcattatttcattaggcatataatcgtagtaacattataatgaaaatctctttcttggaatttttttttttgaaatttgcaaaaaaaaattagggtcggcagtaaaaagacggtcagctaaccggaaacaaaggtttttttcatggcctaatatgaaatttcatgatcaaaaa
gi|22 : tgcagctgtatgttatatgttatacaattgacataaaagatttattgcactgttctgaatagcaataataaaaattgttgtctgcttggggtattattctgtcatactgtaaactcattatttcattaggcatataatcgt-GC------TGTATG----T---TATA--TGT----GA-------ATCATGTTATAAAACTGA--------CAT--A---AAGATTCATTGTACTGTTCT-GAATAGCAA-T-AA----------------------TA--A--------------A----------------------------AA-------CGTT--GTC--------------TG-----CTTGGTGGC-------------CATATTGGAAAT----TGTACAGCAAACAAATGAGTGTATT--CAAA-AGGCAA-CA---TTTCATT--AGGCATAATA---TGGTGACATTG--TGAT---GTAAAGGAAATCATTTTGA-----T--------------------CAACA--ACAA--AAAA----AA--------TTG--A-------------------A--C------AA---------AAAA---TAA---T-AGGGTC-GGCAGTA---AA-----AATTAGG-GGCGGTC------GGCT----AACAGGAAACAAA---G--G--T-TG-T---TTT--tcatgatcaaaaa
gi|23 : gtaCACTGACCATTTATCTTTGAACACTTCACTGTAAACCTAAAATAT-TAGTT----AGATTACAAAA-TTCTATTAGTTTAAAG-GGACACATTGCAATTTTAACACATTTTCTCT-------TAAAGGAATT--TCTAAA----A--T-----------------------AA-A---------ATATCCGTTTCTGG-TTA---CCT---A-A---AATA--AGG--TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---CTTTT-T-C-A----CTCTCGAG----GTACTAGTAATGTTCAGA
gi|24 : -A-TCTA-CA---TTTTGTT--AGGTATAATG---CAGTG----TC--TG-T---GGTACAGAAATGATTTAGA-----TG-G--A--A-A--A-AG-A-TAAC--------------------------------A-------T-TTT----TTTT--T------AA-TTTGGGAAAAAA---AAA---C-AGGGTC-AGCAGTA---CA-----GATTATA-GATGGTC-------ACC----AACCGGAAGC-ATT--G--G--TGTG-T---TGT--TTGT--CT---TATCAAATATAATATT-AAGTACATCAGAAT--A-AAA--ACAAATGCAAAGAAATATCGTTTTGTATtccatatattgttaagcattttaacaggtacattca
gi|25 : gCAGTCACTGTCCATTTATCTTCGAACACTGCACTGTAAATATAAGATAT-AGGTT----AAATTACAAAA-TCGTATCATTTTAAAA-GGACATCTCGCAATTTTAACACATTTTCACT-------TATAGCAATT--TCTAAA----A--TGACT--------TA--GG---CCAATA---ATA-ATATATCCGTTTCTGG-TTAGTTCCT---A-AAATAA-A--G----AAG---TG-TAGAC-CA-----------CGCCTGTATGATTGTCTTTT-C---CTTAT-T-C-A----CTCTCGAG----GTACAAGTAATGTTttataagcattttcacaggtacattaaaa
gi|26 : -------TAAAGCAATT--TCTAAA----A--TTAAT--------TG--GG---CGAA-A---ACA-A-ATGTCCGTTTCCGA-TTAGCTCCT---G-A---GT-A--A----T-----TC-TAGTC-CA-----------C----GTATGATTGTCTTTT-T---TTCTT-T-C-A----------AG--------TAGTAATGTTCAGAG-CACGCCAATCATC----A-GTTGAACATGCA-G----T---TGTA--TGT----TG-------ACCAAGTTATATTA
gi|26 : -----------------------TA--ATC-----------CA---AT------T---T----TCAGTGC-AT-------TATT--TTC--------------TTTCTCTCTGGGCGGC-------------CATGTTGGATAT----TGGGCAGCACACGCATCAatccaattttcagtgcattattttctttctctctgggcggccatgttggatattgggcagcacacgcatca
gi|27 : taaagcaatttctaaaattaattgggcgaaaacaaatgtccgtttccgattagctcctgagtaattctagtccacgtatgattgtctttttttctttcaagtagtaatgttcagagcacgccaatcatcagttgaacatgcagttgtatgttgaccaagttatatAATT--TCTAAA----A--TTAAT--------TG--GG---CGAA-A---ACA-A-ATGCCTGTTTCCGA-TTAGCTCCT---G-A---TT-A--A----T-----TC-TAGAC-TA-----------C----GTATGATTGTCTTTT-T---T--------------CTCTCCAG--------CAGTGATGTTCAGAG-CACGCAAATCATC----ATGTGAACA-TGCA-G----T---TGTA--TTT----TG-------ACCAAGTTATATTA
gi|27 : A--A-C-----------CA---AT------T---T----TCAGTGC-AG-------TATT--TTC--------------TTTCTCTCTGGGCGGC-------------CATGTTGGATAT----TGGGCAACACACGCAaaccaattttcagtgcagtattttctttctctctgggcggccatgttggatattgggcaacacacgca
gi|28 : aatttctaaaattaattgggcgaaaacaaatgcctgtttccgattagctcctgattaattctagactacgtatgattgtcttttttctctccagcagtgatgttcagagcacgcaaatcatcatgtgaacatgcagttgtattttgaccaagttatatta----TTGGGGC-AG-------AACT--CTT--------------TGTCACTCTTGGAGGC-------------AATGCTCGATAT----GATCCAGCAAACAAATTAAGA-GTTAGCAAA-T-TACA-CA---TTTCGTT--AGGTATAACG---AGGTG----AC--CG-T---GTCATGGAAATCATT
gi|29 : taaagatttattgataaataataaaatcttttcagttataccaggaagtgttctacA---AA-----G--TAAA-GACGGTC------AGTC----AACCGGAAACAAAT--GTTG--T-TA-T---TTT--T-GC--CT---TATCAAATAT-AAATTAAAATACATCCGTTCAAATAAA--ACATATACAAAGAAATATTATTTTATAT
gi|3 : TCCAAAAATTGATGTAAGTGTTGCACAT---------GTATCTCAGAAATCGATAGA----AGTTCGGTCACTGACCACTTATCTTCGAACACTTCACAGTTAATCTAAAATAT-TAG-T----AAATTACAACATTTTTATTA-TTTAAAG-GGACACATCGCTTTTTTAACACATTTTCACT-------TAAAGTAATT--TCTAAAAACTA--TAACTA-------TAATAG---TCAA-A---TTA-ATATATACGTTTCTGG-TTAGCCCGT---A-A---AA-A--A----TA-----------------------------------GATTG----TT-T---TTATT-T-C-A----CTTTCGAG----GTTCAAGTAATGTTCAGAG-CAAGCCTATCATT----G-GT------TGTA-G----T---TTTA--T--------------------GTTATATTATTGAGGTAGGTACAT-TA---CAGATTCACTGTACTGCTCT-GAATTACAA-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TCAGGGC-AG-------TATT--CAT--------------CGTCTCTAT--ACGGC-------------CTTGTTTGACAC----CGTACAGCACACACATTAGAATATT--CAAA-A-TCCA-CA---TTTTGTT--TAGTATAATT---CAGTA----T-------------------ATGAT---GA--------A--A--A-A--T-AA-A-CAACA--ATAA--GAAA--GTGATG---Tgtttatgaatttccactgatacaatcaaaattatcatgacttc
gi|3 : ttctgtgtttgtgttgttttctcAA---AAA---T-AAA--C-AACAATA---AGAAAGTGATGTAG-AACGGTC------AGTC----AACCG-AAACTGAT--G--G--T-TT-T---TTT----AC--CT---TATCAAATATGAAATT-AAATACCTCAGTAAAAA-AAA--ACAAATCCAAAGAAATATCATTTCATATagaacggtcagtcaaccgaaactgatggtttttttaccttatcaaatatgaaattaaatacctcagtaaaaaaaaacaaatccaaagaaatatcatttcatatgttcaagcattttccggacacatctattcaaaactaacatgactgca
gi|30 : ttctgtgtttgtgttgttttctctccaaaaattgatgtaagtgttgcacatgtatctcagaaatcgatagaagttcggtcactgaccacttatcttcgaacacttcacagttaatctaaaatattagtaaattacaacatttttattatttaaagggacacatcgcttttttaacacattttcacttaaagtaatttctaaaaactataactataatagtcaaattaatatatacgtttctggttagcccgtaaaaaatagattgtttttatttcactttcgaggttcaagtaatgttcagagcaagcctatcattggttgtagttttatgttatattattgaggtaggtacattacagattcactgtactgctctgaattacaaaataaccatttgttcagggcagtattcatcgtctctatacggccttgtttgacaccgtacagcacacacattagaatattcaaaatccacattttgtttagtataattcagtatatgatgAA-C-TCAA-CA---TTTCGTT--AGGCATAATG---gttcaagcattttccggacacatctattcaaaactaacatgactgca
gi|30 : ag-A-TAATG--TTAT--GAGATTGTAATGGGTTTTTTG--GGGGTTTTT-TTT----TTTTGGT------AA-TTTGG---AGAA---AAA-----AAGGTC-AGCAGT-----------CATT----GGCAGTC------AGCT----AACTGTAAACAAA---A--A--T-TT-T---TTT--Tttatgagattgtaatgggttttttgggggttttttttttttggtaatttggagaaaaaaaggtcagcagtcattggcagtcagctaactgtaaacaaaaatttttttttt
gi|31 : agaactcaacatttcgttaggcCGGC-------------CATGTTGGATATATGTTGTGCAGTAAACACATTACAGTATT--CAAA-A-T--A-CAATTTTTCGTT--AGGTATAATA---CAGTG----AC-----T---GTAATGGAATTCGTTCTGA-----CG-GC-AGTA-A--T-AA-A-TAA-G--AT-A--TAAA--GTAGTA---TTGTTtt
gi|32 : A-A---ATA--TATGTTCGTTTCTGG-CTAGCCCCTGAAA-A---AA-A--A----TAGGCTTGGTAG---------------------GTA-GGTTTTAATTT-G---TTTTC-T---A----C---CAAG----ATACTATTGATGTTTAAAT-CAAGTCAGTCATT----G-GT------TGTA-G----C---TGTA--TGT----TA-------
gi|33 : caaag---TC------T--GC----TTGGGGC-AG-------TATT--CT----------------ATCACTCTGAGGGGCTGGGGGTGGGAATCATGTTGGATAT----TGTGCAAAAAACAAATTAGTGTATT--tata
gi|34 : aaaaatagggtaggaaaaatgtttcagtcgtatcagtacattgA---AAA---C-AGGGTC-AGCAGTA---AA-----GATAAAG-GACGGTC------AATC----AACCGGAAACAAAT--GGTG--T-TT-T---TTT--TTGC--CT---TATC--ATA------C-AAATACCTCAGTATAAA-AAA--ACA
gi|35 : TTGATGGAAGTAATGCACGT---------GTATCTCAAAAATCGAAAGC----AAATCGGTAACTGACCGTTTATCTTCGGACACTTCACTGTAAATCTAAAA
gi|36 : A---AA-----G--TAAA-GACGGTC------AGTC----AACCGGAAACAAAT--GTTG--T-TA-T---TTT--TG-C--CT---TATCAAATATGAAATA-AAATACATCCGTTCAAATAAA--c
gi|37 : TTCAAAAATTGATGGAAGCAATGCACAT---------GCAGCTCAAAAA
gi|39 : ttttgtggttgtgttttttcttccc---AAAA---AAA---T-AGAGTC-GGTAGAAGAAAA-----AAATAGG-GATGGTC------AGGT----AACCGGAAACAAAgc
gi|4 : aaaTCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTAAAAAATTGATAGA----AAATCGGTCACTGAACACTTATCTCTGAACACTTTGCTGTAAATCTAGAATAT-TTGTT----AAATTACAAAA-TTGTATTATTTTAAAG-GGACATATCTCCATTTTATCACATTTTCACT-------TAAAGCAATT--TTTAAA----A--TTACT--------AA--GG---CCAA-A---TTA-ATATATCCGTTTCTTG-TTAGCCCGT---A-A---AA-AATA----TAG---TT-TATAC-CA-----------A----ATATGATTGTCTTTTCC---TTTTT-T-C-A----CTCTCGAT----GTACTAGTAATGTTCAGAG-CAAGCCGATCATT----G-GGA-----TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---CAGATTCACTGTACTGATCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TG------T--AT----TCAGGGC-AG-------TATT--TTC--------------TGTCTCTCTGTGCGGC-------------CATGTTTGATAT----CGTACAACACACACATTAGAATATT--CAAA-A-TCCG-CA---TTTTGTT--AATTATAATG---CAATG-----C--TT-T---GTAACGGAAATGATTTAGA-----TGAA--A--A-A--T-AA-A-TAACA--GTAA--GAAA--GTAATG---TTTT-----------------------------------------------AA---AAA---TCAGGGTC-GACTGTA---AA-----GATAAAG-TACGGTC------AACC----AACCGGAAACTTAT--GT-G--T-TT-T---TT-----GC--CT---TATCAAATATGAAATT-AAACAagtt
gi|40 : attgtgtttgtgtttttgttttattcccCAA-A---AAA-ATATGTGCCTTACTTG-TTGGCCCCTGA-A-A---AA-A--A----TCG---AG-TAG
gi|41 : CAA-A---A---ATATGTTC-TTTCTGG-TTAACCCCTG--A-A---AA-A--A----TAG---GG-TAGgtaagt
gi|5 : aaTCCAAAAATTGATGGAAGAAATGCACATACAAATTGTGTATCTAAAAAATCGATAGA----AAATCGGCCACCGGCCACTTATCTTCCAACACTTCACTGTGAATCTAAAATAT-TAATCTAAAAAATTACg
gi|5 : cgttttgtgtttgtgtattttctcctTTCCAACAC---TTCACTGTGAATCTAAAATA-TTAATCTAAA----AAATTACT--------TA--GG---CCCA-A---ATC-ATATATCCGTTTCTGG-TTAGCCCGT---A-A---AA-A--A----AAG---TG-TATAC-CA-----------C----GTATAATTGTCTTTT-CTTTTTTTT-T-C-A----CTGTCGAG----GTACTAGTAATGTTCAGAG-CA----------------------------A-G----T---TGTA--TGT----TG-------ACAAAGTTATATTACTAAAATAGGTATAT-TA---AAGATTCACTGTGCCGTTCT-GAATAAAAT-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG--------AAT--ATC--------------TGTCTCTCTGGGCGGC-------------CATGTTCGATAT----CGTGCAA-------ATTAGAATATT--CAAA-A-TCAA-CG---TTTCGT----------ATG---CATTG----TG--TG-T---GTAACGGGAATGTTTTAAA-----TGAA--A--A-A--T-AA-A-TAGCA--ATAA--GAAA--AAAATA---TTTTTG--ATT-----T-TTT----TTTT--T------AA-TTTGG---TAAC---GAA---T-ATGGTC-GGTAGTA---AA-----AATTAAG-GACGGTC------AACC----AACCAGAAACTTAT-----G--T-TT-T---TTT--TGGCTTTT---TATTAAATATGAAATT-AAATACCTTAGTATAAA-AAT--ACAAATCCAAAGAAATATCATTTTATttaggcccaaatcatatatccgtttctggttagcccgtaaaaaaaagtgtataccacgtataattgtcttttctttttttttcactgtcgaggtactagtaatgttcagagcaagttgtatgttgacaaagttatattactaaaataggtatattaaagattcactgtgccgttctgaataaaataataaccatttgttcggggcagaatatctgtctctctgggcggccatgttcgatatcgtgcaaattagaatattcaaaatcaacgtttcgtatgcattgtgtgtgtaacgggaatgttttaaatgaaaaataaatagcaataagaaaaaaatatttttgatttttttttttaatttggtaacgaatatggtcggtagtaaaaattaaggacggtcaaccaaccagaaacttatgttttttttggctttttattaaatatgaaattaaataccttagtataaaaatacaaatccaaagaaatatcattttatgattggtatacgacatt
gi|6 : cgttttgtgtttgtgtattttctccttccaaaaattgatggaagaaatgcacatacaaattgtgtatctaaaaaatcgatagaaaatcggccaccggccacttatcTCCAAAAACTGATGAAAGTTATGCACAT---------GTATCTCAAAAATTGATCGATAACAAATCAGCCACTGGCTACTT-TCTTTGAACTTTTTACTATAAATTTAAAATAT-ATGTT----TAATTACAAAA-TGTTATTATTTTAAAG-GGACACATTGCAATTTTATTACATTTTCACT-------AAAAGCAATT--TCTAAA----A--TTATT--------TA--TAATATTAA-ATCAATT-ATATATCCGTTTCTGG-TTAGCCCGT---G-A---AA-A--AAATATAA---TG-TAGAC-CA-----------C----GTATTATTGTTTTTT-T---TCTTT-G-T-T----TTTCCGAT----GTAATAGTACTATTCAGAG-CAAGCCAATCATT----G-GT------TGTA-G----T---TGTA--TGG----TA-------ACCAAGTTATATTATTGAGATAGGTATAT-TA---ATTATTTACTGTGCTGTTCT-TAATAACAA-T-------------------------TAGTA-C-----------CA---TT------T--GT----TCGGAAA-AG-------TATT--CTC--------------TGT-TCTCTAGGCGGC-------------CATATTTGATAT----CGTACAGTACACCCATTAGACTATT--CAAA-A-TACA-CA---TTT-GTT--AGGTATGATG---CAGAC----TC--TT-T---GAAACGGAAATGTTGCAGG-----TG-A--A--AGA--T-CA-A--AACG--A-------------AACA---C---------------T-TTT----TTTT--T------AA-TTTGG---GAAA---CAA---T-AGGGCC-GGCAGTA---AA-----AATTAAG-AACGGTC------AACT----AACCAGAAGCAAAT-----G--T-TT-T---CGT--TGGC--CT---TATCAAATATAAAATT-AAAgattggtatacgacatt
gi|7 : cccTGATGGAAGTAATGCACAT---------GTATCTCATA--TCGATAAA----AAA-AGGTCACTTACCACTTATCTTCGTACACTTCAATGTAAATCTTAGATAT-TAGTT----AAAGTACAAAA-TTTTATTATTTTAAAG-GGACACATCGCTATTTTAACCCATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------TA--GG---CCTA-A---ATA-ATATACCCGTTTCTGG-TTAGCCCGTA--A-A---AA-A--A----TAG---TG-TATAC-CA-----------C----GTATGATTG--TTTT-C---TTTTT-T-T-T----CTCCCGAG----GTAGTAGTAATGTTCAGAA-TAAGCCGATCATT----G-GT------TGTA-G----T---TTTG--TGT----TA-------ATCAAGTTATATTATTGAAATAGGTACATCTAATTAAGATTCACTGTGCTGTTCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TCAGGGC-AG-------TGTT--CTA--------------TGTGTCTCTGGGCGGC-------------CGGGTTTGATAT--------------ACACATTAGAATATT--CAAA-A-TCCA-CA---TTTTGTT--AGGTAAAATG---TAGTG----GC--TG-T---GTAACGGATATGGTTTGAA-----T--A--A--A-A--TAAA-A-TAAAA--ACAA--GAAA--ATAATG---TTTTTG--A-------T-TTTA---TTTT--T------AA-TTTGG---AAAA---AAA---T-ACAGTC-GGCAGTA---AA-----GATTAAG-GATGGTC------AACC----AACCGGAA--------------T-TT-T---TTT--Ta
gi|8 : ATCTCAAAAATCGATAGA----AATTCGATCACTGACCACTTATCTTCGAACACTTCTCTGTATATCTAAAATAT-AAGTT----AAATGA-AAAA-TTCTATTATTTTAAAG-GGACACATTGCGATTTTAATACATTTTCACT-------AAAAGCAATT--TCTAAA----A--TTAC---------------------------ACA-A-----CCATTTCTTG-ATAGCCAGT---A-A---AAGA--A----TAG---TG-TAGAC-CA-----------C----ATAT-----TCTTTT--------TT-T-C-A----CTCTCGAG----GTGCTAGTAATGTTCAGAG-CAAGCCGATCATT----G-GT------TGTA-G----T---TGTAGTTGTATCTTA-------ACCAAGTTAGGTTATTGAGATAGGTACAT-TA---AAGATTCACTGTGCTGTTCT-GAATAACAA-A-AA----------------------CA--A-A-----------CA---CT------T--GT----TCAGGGC-AG-------TATT--CTC--------------TGTATCTCTGAGTGAC-------------CATGTTTGATAT----CATAAAGCACACACATTAGAATAC---CAAA-A-TCCA-CA---TTTTGTT--AAGTATAATG---CAGTG----TT--TA-T---GTAACAGAAATAATTTAGA-----TG-A--A--A-A--A-AA-AATAAAA--ATAA--GAAA--GTAATG---TTTTTG--A-------T-TTT----TTTT--T------AA-TTTGG---GAAA---AAA---T-GGGGTC-GGCAGTT---AA-----GATTAAG-GACAGTC------AACC----AACCCAAAACTTAT--G--C--T-TT-T---TT-----GC--CT---TATCAAATATGAAATT-AAATAttt
gi|9 : TCCAAAAATTGATGGAAGTAATGCACAT---------ATATCTAAAAGATTGATAGA----AAATCGGTCACTGAACACTTATCTCTGAACACTTTGCTGTAAATCTAGGATAT-TTGTT----AAATTACAAAA-CTGTATTATTTTTAAG-GGACATATCGCCATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------AA--GG---CCAA-A---TTA-ATACATCCGTTTCTTG-TTAGCCCTT---A-A---AA-A--A----T-G---TT-CAGAG-CA-----------
gi|9 : tcccAATGTTCAGAG-CAAGCCGATCATT----G-GGA-----TG-A-G----G---TGTG--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---CAGATTCACTGTACTGATCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TG------T--AT----TCAGGGC-AG-------TATT--TTT--------------TGTCTCTCTGTGCGGC-------------CATGTTTTATAT----CGTACAGCACACACATTAGAATATT--CAAA-A-TCCG-CA---TTTTGTT--AATTATACTT---CAATG-----C--TT-T---GTAACGGAAATGATTTAGA-----TGAA--A--A-A--T-AA-A-TAACA--ATAA--GAAA--GTAATG---TTTT----------------------------------------------GAA---AAA---TCAGGGTC-GCTTGTA---AA-----GATAAAG-TACAGTC------AACC----ATCCGGAAATTTAT--GT-G--T-TT-T---TT-----GC--TT---TATCAAATATGAAATT-AAATACagccgatcattgggatgaggtgtgtgttaaccaagttatattattgagataggtacattacagattcactgtactgatctgaataacaaaataaccatgtattcagggcagtattttttgtctctctgtgcggccatgttttatatcgtacagcacacacattagaatattcaaaatccgcattttgttaattatacttcaatgctttgtaacggaaatgatttagatgaaaaataaataacaataagaaagtaatgttttgaaaaatcagggtcgcttgtaaagataaagtacagtcaaccatccggaaatttatgtgttttttgctttatcaaatatgaaattaaatac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): ATTAAGCACTATTGGAATTTCACATTCATTTTAAATTTCTTGCGGGACAACTCGTTTCCTAAGG
Unaligned ( gi|42 ): TGCGAGGGGGGTTGGCCTCAGAATAAATTAGGGCTGTCTAAAAAA
Unaligned ( gi|43 ): TATCATCATTTTAAATGTTTTAGCATTTTCACAGCTACATTAAAA
Alignments
lowQualScore : 111111111 1111111 111111111111 111 111111111111111111111 111111 1111111 333333333333333333333333333 11111111111 11111111 11111111111111 111111111111111 111111111111111111111 2222222222222 111111 111111
lowQualScore : 666666666 7777 0 3 7777 3 1 3 1 0000000 33 6666 33 333333333333 444 1 55555 1 0 1 0 333 1 444 3 22 9999 5555 1 666666666666666666666 1 0 3 0 77777 1 1 888888 6666 1 1 99999 1 222222 1 3333 222 22 3333 5555555 3 888 22 333 0 2 777777777777777777777777777 55 1 11111111111 333 555555 77777777 1 5555555 22 00000000000000 0 9999999999999 1 3333 2 3 22 1 5 1 333 0 22 333 777777777777777 2 0 555555555555555555555 1 44 999999999 66666666666 7777777777777 6666 22 666666 33 333 222 555 5 1 222 33333 1 7777777 3333 11 999999 22 1 1 222 9999 33 444 0 2 0 8 66
lowQualScore : ......... .... . . .... . . . . ....... .. .... .. ............ ... . ..... . . . . ... . ... . .. .... .... . ..................... . . . . ..... . . ...... .... . . ..... . ...... . .... ... .. .... ....... . ... .. ... . . ........................... .. . ........... ... ...... ........ . ....... .. .............. . ............. . .... . . .. . . . ... . .. ... ............... . . ..................... . .. ......... ........... ............. .... .. ...... .. ... ... ... . . ... ..... . ....... .... .. ...... .. . . ... .... .. ... . . . . ..
lowQualScore : 000000000 7777 5 3 1111 6 0 6 0 0000000 99 1111 99 777777777777 777 7 00000 7 6 7 5 111 7 666 3 33 4444 0000 7 777777777777777777777 5 6 9 2 22222 8 8 888888 4444 9 2 11111 7 333333 7 7777 999 33 5555 6666666 0 222 33 333 5 0 999999999999999999999999999 22 9 77777777777 222 222222 88888888 7 7777777 44 77777777777777 2 6666666666666 0 7777 4 1 55 7 2 7 000 2 44 222 555555555555555 4 5 444444444444444444444 8 33 777777777 99999999999 6666666666666 2222 88 777777 66 222 999 888 0 7 777 88888 5 4444444 3333 99 111111 33 7 7 999 4444 22 111 8 5 1 9 11
consensus : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTCAAAAATCGATAGA----AAATCGGTCACTGACCACTTATCTTCGAACACTTCACTGTAAATCTAAAATAT-TAGTT----AAATTACAAAA-TTNTATTATTTTAAAG-GGACACATCGCNATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------TA--GG---CCAA-A---ATA-ATATATCCGTTTCTGG-TTAGCCCCT---A-A---AA-A--A----TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---TTTTT-T-C-A----CTCTCGAG----GTACTAGTAATGTTCAGAG-CAAGCCGATCATC----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---AAGATTCACTGTGCTGTTCT-GAATAACAA-N-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATT--CTC--------------TGTCTCTCTGGGCGGC-------------CATGTTNGATAT----CGTGCAGCACACACATTAGAATATT--CAAA-A-TCCA-CA---TTTCGTT--AGGTATAATG---CAGTG----TC--TG-T---GTAACGGAAATGATTTAGA-----TG-A--A--A-A--T-AA-A-TAACG--ATAA--GAAA--GTAATG---TTTTTG--A-------T-TTT----TTTT--T------AA-TTTGG---AAAA---AAA---T-AGGGTC-GGCAGTA---AA-----GATTAAG-GACGGTC------GGCC----AACCGGAAACAAAT--G--G--T-TT-T---TTT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGTATAAA-AAA--ACAAATCCAAAGAAATATCATTTTATAT
Reference ( family-492 ) : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTCAAAAATCGATAGA----AAATCGGTCACTGACCACTTATCTTCGAACACTTCACTGTAAATCTAAAATAT-TAGTT----AAATTACAAAA-TTNTATTATTTTAAAG-GGACACATCGCNATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------TA--GG---CCAA-A---ATA-ATATATCCGTTTCTGG-TTAGCCCCT---A-A---AA-A--A----TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---TTTTT-T-C-A----CTCTCGAG----GTACTAGTAATGTTCAGAG-CAAGCCGATCATC----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---AAGATTCACTGTGCTGTTCT-GAATAACAA-N-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATT--CTC--------------TGTCTCTCTGGGCGGC-------------CATGTTNGATAT----CGTGCAGCACACACATTAGAATATT--CAAA-A-TCCA-CA---TTTCGTT--AGGTATAATG---CAGTG----TC--TG-T---GTAACGGAAATGATTTAGA-----TG-A--A--A-A--T-AA-A-TAACG--ATAA--GAAA--GTAATG---TTTTTG--A-------T-TTT----TTTT--T------AA-TTTGG---AAAA---AAA---T-AGGGTC-GGCAGTA---AA-----GATTAAG-GACGGTC------GGCC----AACCGGAAACAAAT--G--G--T-TT-T---TTT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGTATAAA-AAA--ACAAATCCAAAGAAATATCATTTTATAT
gi|1 : ATCTCAAAAATCGATAGA----AATTCGATCACTTACCACTTATCTTCGAACACATCTCTGTAAATCTGAAATAT-TAGTT----AAATCACAAAA-TTGTATTATTCTAAAATGGACACATCGCTGTTTTAATACATTTTCATA-------TAAAGCAAAT--TCTAAC----A--TTACT--------TA--GG---CCAA-A---GTA-ATATATCCGTTTCTGG-TTAGCCAAT---A-A---AA-A--A-----------A-TA-----A-----------C----GTATAATTATCTTTA-C---TTTTT-T-C-A----CTGTCAAG----GTTCATGTAATGTTCAGGG-CAGACCGATCATT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAATTATATTATT----TAGGTACAT-TA---AATATTCACTGTGCTGTTCC-GAATAACAA-A-AA----------------------TA--A-G-----------CA---TT------T--GT----TAGGTAC-AG-------TATT--TTC--------------TGTCCCTCTGAGCGGC-------------CACGTTTGATAT----CGTGCAGCACACAGATTAGAATATT--CAAA-A-TCCA-TA---CTTGTTT--AGGTAAAATG---CAGTT----TT--TT-T---GTTACGGAAATGATTAAGA-----TG-A--A--A-A--G-TA-A-TAACA--ATTA--GGAA--ATAATG---CTTTTT--T-------T-TTT----TTTT--TTA----AA-TTTGG---GAAA---AAA---T-AGGACA-GGCAGTA---AA-----TATAAAG-GACGGTC------AACCAACTAACCGGAAACTTAC--G--C--C-TT-T---TTT----GC--CT---TATCAAATATGAATTT-AAATACCTCAGTATCAA-AAA--ACTAATCCAGAGAAATAACATTTTATAT
gi|10 : -A---ATA-AAATGTTCATATCTAGATGGGGCTCT---A-A---AA-A--A----AAG---GG-TAG-T-TA-----------G----GTAGGATT--------------TTT-T-C-------TCTCAAA----ATACCATTAATGTCGAAAT-CAAGCTGATCATT----G-GT------TGTG-GAACTT---TGCT--TGT----TA-------ACCAAGTTATGTTACTGAGATA----TTT-TA---AAGATTCATTGTATTATTCT-GAATAACAG-T-AA----------------------TA--A-CAG---------TG---TT------TCAGTGATATCAGGGT-GG-------GGTTTACTTGATGGTATACGAGATGTCACTCTGGGCATT-------------TATGTTGGATAT----CG-GCAGCAAAGAAATAAGAGTATT--CTGA-A-TACA-GA---TTTTGTTTTAGGTATAATG---GAGTG----AC--CA-T---GTAATGGAAATCATTTAGA-----TG-A--A--C-A--A-AA-A----------AA--GACA--ATA-------------------------TT----TTTT--T------AA-ATTGG---AAAA---AAA---T-AGGATC-AACAGTA---AA-----AATTAGG-AACAGTCTTAGTAGGTC----AACCAGAAACATTT--T--T--T-TT-TATATTT--TTGC--CT---TATgttaaaacattttcacaggtacattcaaaactaacatgacttct
gi|11 : ggcttCAA-A---AAA-AT-TGTTTGTTTCTGG-TAAGCCTCTGA-A-A---AA-A--A----TAG---GT-TAGGT--A-----------T----GTAGGCTTTTTTTTT-T---TTTTT-T-T-TTTTTCTCCCGAGACCTGTACTTTTAATGTTCAAAT-CAAG----TCATC----A-GT------TGTA-G----C---TGTA--TGT----TATATGTTAACCATGTTATATAATTGACATA---------A---AATATTCATTATCCTGTTCT-GAATAGCAA-T-AATAAAACTGTTTCAGTCCTATCATG--A-C-----------GA---CT------T--GTCTACTCGGAGC-AG-------AAT-----C--------------TGTCACTCTTGGTGGC-------------CATGTTAAATAT----CGTGCAGCAAACAAATTAGTGTATT--AAAA-ACTCAA-CA---TTTCGTT--AGGCATAATG---TAGTG----ACATTG-TAATGTGATGGAAAT--TTTA-A-----TG-A--A--C----C-AA-A--AACA--A-------------AATT---TTTAT---A-------TATTT----TTTC--G------AA-ATTGA---AAAATAAAAA---TTAGGGTC-ACCAGTA---AA-----AATTAGG-GACAGTC------GGCT----AACTGGAAACAAA------G--T-TT-T---TTT--Taacaccatataacataaa
gi|12 : gg---CCAA-A---ATATATATATTTATTTCTGG-TTGGCTCCT---G-GC--AA-A--A----TAG---GG-TAGAT-AA----------------GTAAAATT----------------T-T-C-C----CCCATGAG----ATACTAGTAATGTTCAAAC-CAAGCCAATCATC----G-GC------TGTA-G----T---TGTA--TGT----TT-------ACTTAGTTATATGTTTGAGATATATACAT-TA---AAGATTCATATTACTGTTCTGGAATAGCAACA-A-----------------------TA--A-CAATGTTTCAGTCA---TT------TC-AC----CTGGGTC-AG-------TACT--CTC--------------TGTCTCTCTGGACGGC-------------CATGTTGGATTC----CGTGCAACAAACAAATAAGACTATT--GAAA-A-CATA-CA---TTTCGTT--AGt
gi|12 : a----TC--CG-T---GCAAC--AAACAAATAAGACTAT-TG-A--A--A-ACAT-AC-A-TTTCG--TTAGCTGAAA--TT--TG---TTTTT-----------T-TTC----TTTT--TG-----AA-ATTGG---GGAA---AAA---T-AGGATC-AGCAGTA---TA-----AGTTAAG-GACGGTC------GGCC----AACCGGAAAAAAAT--G--C--A-TT-T---TTT----GC--CTGACTAT-AAATAT--AATT-AAActgaaatttgttttttttctttttgaaattggggaaaaataggatcagcagtataagttaaggacggtcggccaaccggaaaaaaatgcattttttgcctgactataaatataattaaaa
gi|13 : accaaaatatatatatttatttctggttggctcctggcaaaatagggtagataagtaaaattttcccccatgagatactagtaatgttcaaaccaagccaatcatcggctgtagttgtatgtttacttagttatatgtttgagatatatacattaaagattcatattactgttctggaatagcaacaataacaatgtttcagtcatttcacctgggtcagtactctctgtctctctggacggccatgttggatA-A---ATA-AT-TAT--GTTTTCGG-TTAATCCCT---G-A---AA-A--A----TAG---GG-TATATACAATTTTCTTTCTC----TTTTGTTTGTCTTTT-----TATTT-T-C-A------CCCGAT----GTTCTAGTGATGTTTATAG-CAAGTAAATCACCACCGG-GT------TGTA-A----C---TGTA--TGG----CA-------ATCAAGCTCTATTATTTAAATTGATACGT-TA---AAGATTTATTGTACTGTTAT-CATTAACACTT-A-----------------------TA--A-C-----------TT---TT------TCCATCAAATCAGGATGAGCTTTATTTATT--CTC--------------TGTCACTCTGGACGGC-------------GATATTGAATAT----CGTACAGCAAACA------AA-ATT-----A-A-TACA-CA---TTTCATA--AAGTAT-ATG---CAGCG----AC----------TAACAAAAAAAATTTATATATATTG-A--A--A-T--T-AG-A-AAAC----TAG--GAa
gi|13 : g------AA-TT------AGAA---AAC---T-AGGACA-TGCAGTA---AA-----AAATACG-AACGGTC------AACC----TACCAGACATAAA---G--G--T-AT-T---TTT--catgcagtaaaaaatacgaacggtcaacctaccagacataaaggtattttt
gi|14 : gaaataattatgttttcggttaatccctgaaaaatagggtatatacaattttctttctcttttgtttgtctttttattttcacccgatgttctagtgatgtttatagcaagtaaatcaccaccgggttgtaactgtatggcaatcaagctctattatttaaattgatacgttaaagatttattgtactgttatcattaacacttataactttttccatcaaatcaggatgagctttatttattctctgtcactctggacggcgatattgaatatcgtacagcaaacaaaattaatacacatttcataaagtatatgcagcgactaacaaaaaaaatttatatatattgaAA-A---A-A-AGATGTTCATATCTGG-TCAGCC------------AG-A--A----TAG---GG-TAGAT--A-----------G----GTAGG-----------C---TTTTT-TAC-A----TTGTCCAGAT--GTACATTTAATGTTCAAAT-CAAGTCAGTCATA----G-GT------TGTA-G----CCGCTGTA--TGC----TATATGGTAATCACCTTATATAAT-------GG-ACAT-AA---AAGATTCATTGTACTGTTCT-GAAAAGCAA-TTA-----------------------TA--A-A-----------GAATGTT------TCAGTCATATCAGGAC-AA-------TGTC--TGC--------------TG---CTCTGGGTGGC-------------CATGTTGGATAT----TGTGCAACAAACAATTTAGTATATT--AAAA-A-CTCAGCA---TTTCGTT--AGGCATAATG----------------TA-T---ATAATGAAAATCATTT
gi|14 : ---TTTTTG--AAA-----T-TTT----TTTT--TGTTGGAAA-TTTGA---AAAA---AAAAAAT-AAGGTTTGGCAGTA---AA-----AAATGGG-GACGGTT------GGCT----AACCAGAAGCAAAtatttttgttttttgaaatttttttttgttggaaatttgaaaaaaaaaaataaggtttggcagtaaaaaatggggacggttggctaaccagaagcaaa
gi|15 : aaaaaagatgttcatatctggtcagccagaatagggtagataggtaggcttttttacattgtccagatgtacatttaatgttcaaatcaagtcagtcataggttgtagccgctgtatgctatatggtaatcaccttatataatggacataaaagattcattgtactgttctgaaaagcaattataaagaatgtttcagtcatatcaggacaatgtctgctgctctgggtggccatgttggatattgtgcaacaaacaatttagtatattaaaaactcagcatttcgttaggcataatgtatataatgaaaatcattttatttttgtAA-A---A-A-ATATGTTCGTTTCTGG-TTAGCCCCCTG-ATA---AA-A--A----TAG---GG-TAGGT--A-----------G----GTAT-----TTTTTT-C---GTTTTAT-T-T----CTCCCGAG----TTACTATTTATGC-CTGATTCAAGTCAATCAT------------------A-G----T---TGTA--TGT----TA-------ACCATGTTATATAATT----TA--CACAT-AA---AAGAT
gi|15 : TAGAGTATT--CAAA-ACTCAA-CA---TTTCCTT--AGGCATAATG---TA------------------GTGAC-------ATT--------------------G--T-AATA-TAATG--------------GTAATC---ATTTTG--A-------T-CATGAAATTTT--T------AA---------AAAA---AAA---T-AGCATT-TGCAATA---AA-----GA--AAGAGACGGTC------GGCT----AACCGTAAACAAAT--GT-G--T-TT-T---TTT--Tctgaatatcaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagagtattcaaaactcaacatttccttaggcataatgtagtgacattgtaatataatggtaatcattttgatcatgaaatttttaaaaaaaaatagcatttgcaataaagaaagagacggtcggctaaccgtaaacaaatgtgtttttttttt
gi|16 : aaaaaatatgttcgtttctggttagccccctgataaaaatagggtaggtaggtatttttttcgttttatttctcccgagttactatttatgcctgattcaagtcaatcatagttgtatgttaaccatgttatataatttacacataaaagatctgaatatcaataatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn---TTTTT-T-C-A----CTCTCGAG----ATACTAGTAATGTCCAGAG-CAAGTCGATCATT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACTAGGTAATATTGTTGAGATAGGTACAT-TG---AAGATTCACTGTGCTGTTCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TACGGGC-AG-------TATT--TTC--------------TGTCTCTCTGGGCGGC-------------CATGTTTGATAT----CTTGCAGCACACACATTAAAATATT--CAAA-T-TCCA-CA---TTTTGTT--AGGTATAATG---AAGTG----TC--TG-T---GTAATGGAAATGATTCAGA-----TGAA--A--A-A--T-AA-A-TAATA--ATAA--GTAA--GTTAAG---TTTTTT--A----------TT----TTTT--T------AA-TTTAG---GAAA---AAA---T-AGTGTC-GACAGTT---AA-----GATTAAG-GACGTTC------AACC----AACCGGAAACTTAT--G--GCTT-TT-T---TTT--TAGC--CT---TATCAAAAATGAAATG-AAATAtt
gi|17 : t---TATA--TAT----TA-------ACCATGTTGCATAATTGACATA---------A---AAGATTCATCATACTGTTCT-GAATAGCAA-T-AATNNNNNNNN-------------NN--N-N-----------NN---NN------N--NN----NNNNNNN-NN-------NNNN--NNN--------------NNNNNNNNNNNNNNNN-------------NNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNTT--CAAATC-TCAA-CA---TGTCGTT--AGGCATAATGTTTCGGTA----ACATTG-TAATGTAATGGAAATCATTTTT------TG-----------------------G--ACAA--AAAA--GTCTTC---TTTTT-------------TTT----TCTT--TGA----AA-TTTGA---AAAA---TAA---T-AGGATC-GGCATTA----------GGTTAGG-GACGATC------GTCT----AACCGGAAACAAA---G--T--T-TT-T---TTT--TG
gi|18 : atgtttaccttttcgtcatgtcgtaatttgtatgctgattacgttgtcaggccaacaaaactttcgtgtc-GT------TGTA-G----T---TGTA--TGT----TACATGTA-ACCAAGTTATATTATTTAGATAGGTATAT-TA---AATAATCACTGTGTTATTCT-AAATAACAA-T-A------------------------AGTA-C-----------CA---TT------T--GT----TTGAGGG-AG-------TATT--CTC--------------TGT-TCTCTAGGCGGT-------------CATATTTGATAT----CGTACAGTACACATATTAGAATATC--CAAG-A-TACA-CA---TTTTGTA--AGGTATTATG---CAGAC----TC--TT-T---GAAACGTAAATGTTTCAAA-----TG-A--A--A-A----AC-A-AAACG--A-AA--CAA------------TTTTT-----------T-TTT----TTTT--T------AATTTTGG---GAAA---CAA---T-AGGGCC-GGCAGTA---AA-----GATTAAG-AACGGTC------AACC----AACCAGAAACAAAT-----G--T-TT-T---CGT--TGGC--CT---TATCAAATATAAAATA-AAAT-CTTCAGTGTAAA-AAA--ACGATTCCATAGAAAt
gi|19 : TCCAAAAACTGATGGAAGTAAAGCAGAT---------GTATCTCAAAAATCGATAAC----AAATCAGCCACTGGCTACTT-TCTTCAAACACTTTACTGTAAATTTAAAATATATGTTT----AAAT-ACAAAA-TGTTATTATTTTAAAG-GGACACATTGCAATTTTATTACATTTTCACT-------CAAAGCAATT--TCTAAA----A--TTACTAATAATATTA--AA---TCAA-A----TA--TATATCCGTTTCTGG-TTAGCCCCT---G-A---AA-A--AAATGTAG---TG-TAGAC-CA-----------C----GTATTATTGTTTTTT-C---TTT------------------------GTACTA------TTCAGAG-TAAGCCAATCATT----G-GT------T
gi|2 : tttatgttcgagtttttttcttcccTCCAAAATTGGATGGAAGTAATGTACAT---------GTATCTCAGAAGTCGATAGA----AAATCGATCACTGACCACTTTTCTTCGAACACTTCACTGTCAATCTAAATTAT-TAGTT----AAATTACGAAA-TTTTATTATTTTAAAG-GGATTCATCGCTATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------AA--GG---CCAA-A---ATA-ATATATCCGTTTCTGG-TTAACTCGT---A-A---AA-T--A----TAG---TG-TTTAC-CA-----------C----GTATGCTTGTCTTTT-C---TTTTT-T-CCG----CTCTCGAG----GTACTAGTAATGTACAGGG-CAAGCCGATCGTT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACAAGGTTATATTATAAAGATAGATACGA-TG---AAGATTCACTGTGCTGTTCT-GAATAACAA-C-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATT--TTC--------------TGTCTCTCTGGGCGGC-------------CATGTTTTATAT----CTTACAGCACACACATTATAATATT--CAAA-A-CCCA-CG---TCTTGTT--AGGTATAATG---CAGTG----TC--TG-T---GTAACAAAAATGATTCAGA-----T--ACTA--A-A--T-AA-A-TAACG--ATAA--GAAA--GTAATG---ATTTTG--A-------T-ATG----TTTT--T------AA-TTTAG---AAAA---AAA---T-AGGGTA-GGCAGTA---AA-----TATTAAG-GACGTTC------AACC----AACCAGAAACGTATAGG--G--T-TTAT---TTT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGTATAAA-AAACCCCAAATCCAATGAAATATCATTTTATAT
gi|20 : ---A-A---AA-A--A----TAG---GG-TAG---------------------GTA-GGTT-TCTTC--C---TTTTT-T-T-T----CTCCCGAG----GTGCTCTCAATGTTCAAAT-TGAGTGAATCATA----A-GA------GGTA-G----C---TGTA--TGT----TA----------TAGTTA----ACTGACATA---------A---AAGATTCA-----TTGTTCT-GAATAGCAA-
gi|21 : gaa------TGCA-G----C---TGTA--TGT----TA---------TATGTTATACAATTGACATA---------A---AAGATTTATTGCACTGTTCT-GAATAGCAATA-A-----------------------TA--A-A-----------AA---TTGTTGTCT--GC----TTGGGGT-AT-------TATT--CTttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgtattcaaaacattttgttagtcattatgtagtaacattgtaatgttatggaaatc
gi|21 : A-G-TAACATTATAAT-GAAA--ATCTCT---TTCTTGGAA-------T-TTT----TTTT--TTTGA--AA-TTTGC---AAAA---AAAAATT-AGGGTC-GGCAGTA---A----------AAA-GACGGTC------AGCT----AACCGGAAACAAA---G--G--T-TT-T---TTTCATGGC--CT--------AATATGAAATT-gtcatactgtaaactcattatttcattaggcatataatcgtagtaacattataatgaaaatctctttcttggaatttttttttttgaaatttgcaaaaaaaaattagggtcggcagtaaaaagacggtcagctaaccggaaacaaaggtttttttcatggcctaatatgaaatttcatgatcaaaaa
gi|22 : tgcagctgtatgttatatgttatacaattgacataaaagatttattgcactgttctgaatagcaataataaaaattgttgtctgcttggggtattattctgtcatactgtaaactcattatttcattaggcatataatcgt-GC------TGTATG----T---TATA--TGT----GA-------ATCATGTTATAAAACTGA--------CAT--A---AAGATTCATTGTACTGTTCT-GAATAGCAA-T-AA----------------------TA--A--------------A----------------------------AA-------CGTT--GTC--------------TG-----CTTGGTGGC-------------CATATTGGAAAT----TGTACAGCAAACAAATGAGTGTATT--CAAA-AGGCAA-CA---TTTCATT--AGGCATAATA---TGGTGACATTG--TGAT---GTAAAGGAAATCATTTTGA-----T--------------------CAACA--ACAA--AAAA----AA--------TTG--A-------------------A--C------AA---------AAAA---TAA---T-AGGGTC-GGCAGTA---AA-----AATTAGG-GGCGGTC------GGCT----AACAGGAAACAAA---G--G--T-TG-T---TTT--tcatgatcaaaaa
gi|23 : gtaCACTGACCATTTATCTTTGAACACTTCACTGTAAACCTAAAATAT-TAGTT----AGATTACAAAA-TTCTATTAGTTTAAAG-GGACACATTGCAATTTTAACACATTTTCTCT-------TAAAGGAATT--TCTAAA----A--T-----------------------AA-A---------ATATCCGTTTCTGG-TTA---CCT---A-A---AATA--AGG--TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---CTTTT-T-C-A----CTCTCGAG----GTACTAGTAATGTTCAGA
gi|24 : -A-TCTA-CA---TTTTGTT--AGGTATAATG---CAGTG----TC--TG-T---GGTACAGAAATGATTTAGA-----TG-G--A--A-A--A-AG-A-TAAC--------------------------------A-------T-TTT----TTTT--T------AA-TTTGGGAAAAAA---AAA---C-AGGGTC-AGCAGTA---CA-----GATTATA-GATGGTC-------ACC----AACCGGAAGC-ATT--G--G--TGTG-T---TGT--TTGT--CT---TATCAAATATAATATT-AAGTACATCAGAAT--A-AAA--ACAAATGCAAAGAAATATCGTTTTGTATtccatatattgttaagcattttaacaggtacattca
gi|25 : gCAGTCACTGTCCATTTATCTTCGAACACTGCACTGTAAATATAAGATAT-AGGTT----AAATTACAAAA-TCGTATCATTTTAAAA-GGACATCTCGCAATTTTAACACATTTTCACT-------TATAGCAATT--TCTAAA----A--TGACT--------TA--GG---CCAATA---ATA-ATATATCCGTTTCTGG-TTAGTTCCT---A-AAATAA-A--G----AAG---TG-TAGAC-CA-----------CGCCTGTATGATTGTCTTTT-C---CTTAT-T-C-A----CTCTCGAG----GTACAAGTAATGTTttataagcattttcacaggtacattaaaa
gi|26 : -------TAAAGCAATT--TCTAAA----A--TTAAT--------TG--GG---CGAA-A---ACA-A-ATGTCCGTTTCCGA-TTAGCTCCT---G-A---GT-A--A----T-----TC-TAGTC-CA-----------C----GTATGATTGTCTTTT-T---TTCTT-T-C-A----------AG--------TAGTAATGTTCAGAG-CACGCCAATCATC----A-GTTGAACATGCA-G----T---TGTA--TGT----TG-------ACCAAGTTATATTA
gi|26 : -----------------------TA--ATC-----------CA---AT------T---T----TCAGTGC-AT-------TATT--TTC--------------TTTCTCTCTGGGCGGC-------------CATGTTGGATAT----TGGGCAGCACACGCATCAatccaattttcagtgcattattttctttctctctgggcggccatgttggatattgggcagcacacgcatca
gi|27 : taaagcaatttctaaaattaattgggcgaaaacaaatgtccgtttccgattagctcctgagtaattctagtccacgtatgattgtctttttttctttcaagtagtaatgttcagagcacgccaatcatcagttgaacatgcagttgtatgttgaccaagttatatAATT--TCTAAA----A--TTAAT--------TG--GG---CGAA-A---ACA-A-ATGCCTGTTTCCGA-TTAGCTCCT---G-A---TT-A--A----T-----TC-TAGAC-TA-----------C----GTATGATTGTCTTTT-T---T--------------CTCTCCAG--------CAGTGATGTTCAGAG-CACGCAAATCATC----ATGTGAACA-TGCA-G----T---TGTA--TTT----TG-------ACCAAGTTATATTA
gi|27 : A--A-C-----------CA---AT------T---T----TCAGTGC-AG-------TATT--TTC--------------TTTCTCTCTGGGCGGC-------------CATGTTGGATAT----TGGGCAACACACGCAaaccaattttcagtgcagtattttctttctctctgggcggccatgttggatattgggcaacacacgca
gi|28 : aatttctaaaattaattgggcgaaaacaaatgcctgtttccgattagctcctgattaattctagactacgtatgattgtcttttttctctccagcagtgatgttcagagcacgcaaatcatcatgtgaacatgcagttgtattttgaccaagttatatta----TTGGGGC-AG-------AACT--CTT--------------TGTCACTCTTGGAGGC-------------AATGCTCGATAT----GATCCAGCAAACAAATTAAGA-GTTAGCAAA-T-TACA-CA---TTTCGTT--AGGTATAACG---AGGTG----AC--CG-T---GTCATGGAAATCATT
gi|29 : taaagatttattgataaataataaaatcttttcagttataccaggaagtgttctacA---AA-----G--TAAA-GACGGTC------AGTC----AACCGGAAACAAAT--GTTG--T-TA-T---TTT--T-GC--CT---TATCAAATAT-AAATTAAAATACATCCGTTCAAATAAA--ACATATACAAAGAAATATTATTTTATAT
gi|3 : TCCAAAAATTGATGTAAGTGTTGCACAT---------GTATCTCAGAAATCGATAGA----AGTTCGGTCACTGACCACTTATCTTCGAACACTTCACAGTTAATCTAAAATAT-TAG-T----AAATTACAACATTTTTATTA-TTTAAAG-GGACACATCGCTTTTTTAACACATTTTCACT-------TAAAGTAATT--TCTAAAAACTA--TAACTA-------TAATAG---TCAA-A---TTA-ATATATACGTTTCTGG-TTAGCCCGT---A-A---AA-A--A----TA-----------------------------------GATTG----TT-T---TTATT-T-C-A----CTTTCGAG----GTTCAAGTAATGTTCAGAG-CAAGCCTATCATT----G-GT------TGTA-G----T---TTTA--T--------------------GTTATATTATTGAGGTAGGTACAT-TA---CAGATTCACTGTACTGCTCT-GAATTACAA-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TCAGGGC-AG-------TATT--CAT--------------CGTCTCTAT--ACGGC-------------CTTGTTTGACAC----CGTACAGCACACACATTAGAATATT--CAAA-A-TCCA-CA---TTTTGTT--TAGTATAATT---CAGTA----T-------------------ATGAT---GA--------A--A--A-A--T-AA-A-CAACA--ATAA--GAAA--GTGATG---Tgtttatgaatttccactgatacaatcaaaattatcatgacttc
gi|3 : ttctgtgtttgtgttgttttctcAA---AAA---T-AAA--C-AACAATA---AGAAAGTGATGTAG-AACGGTC------AGTC----AACCG-AAACTGAT--G--G--T-TT-T---TTT----AC--CT---TATCAAATATGAAATT-AAATACCTCAGTAAAAA-AAA--ACAAATCCAAAGAAATATCATTTCATATagaacggtcagtcaaccgaaactgatggtttttttaccttatcaaatatgaaattaaatacctcagtaaaaaaaaacaaatccaaagaaatatcatttcatatgttcaagcattttccggacacatctattcaaaactaacatgactgca
gi|30 : ttctgtgtttgtgttgttttctctccaaaaattgatgtaagtgttgcacatgtatctcagaaatcgatagaagttcggtcactgaccacttatcttcgaacacttcacagttaatctaaaatattagtaaattacaacatttttattatttaaagggacacatcgcttttttaacacattttcacttaaagtaatttctaaaaactataactataatagtcaaattaatatatacgtttctggttagcccgtaaaaaatagattgtttttatttcactttcgaggttcaagtaatgttcagagcaagcctatcattggttgtagttttatgttatattattgaggtaggtacattacagattcactgtactgctctgaattacaaaataaccatttgttcagggcagtattcatcgtctctatacggccttgtttgacaccgtacagcacacacattagaatattcaaaatccacattttgtttagtataattcagtatatgatgAA-C-TCAA-CA---TTTCGTT--AGGCATAATG---gttcaagcattttccggacacatctattcaaaactaacatgactgca
gi|30 : ag-A-TAATG--TTAT--GAGATTGTAATGGGTTTTTTG--GGGGTTTTT-TTT----TTTTGGT------AA-TTTGG---AGAA---AAA-----AAGGTC-AGCAGT-----------CATT----GGCAGTC------AGCT----AACTGTAAACAAA---A--A--T-TT-T---TTT--Tttatgagattgtaatgggttttttgggggttttttttttttggtaatttggagaaaaaaaggtcagcagtcattggcagtcagctaactgtaaacaaaaatttttttttt
gi|31 : agaactcaacatttcgttaggcCGGC-------------CATGTTGGATATATGTTGTGCAGTAAACACATTACAGTATT--CAAA-A-T--A-CAATTTTTCGTT--AGGTATAATA---CAGTG----AC-----T---GTAATGGAATTCGTTCTGA-----CG-GC-AGTA-A--T-AA-A-TAA-G--AT-A--TAAA--GTAGTA---TTGTTtt
gi|32 : A-A---ATA--TATGTTCGTTTCTGG-CTAGCCCCTGAAA-A---AA-A--A----TAGGCTTGGTAG---------------------GTA-GGTTTTAATTT-G---TTTTC-T---A----C---CAAG----ATACTATTGATGTTTAAAT-CAAGTCAGTCATT----G-GT------TGTA-G----C---TGTA--TGT----TA-------
gi|33 : caaag---TC------T--GC----TTGGGGC-AG-------TATT--CT----------------ATCACTCTGAGGGGCTGGGGGTGGGAATCATGTTGGATAT----TGTGCAAAAAACAAATTAGTGTATT--tata
gi|34 : aaaaatagggtaggaaaaatgtttcagtcgtatcagtacattgA---AAA---C-AGGGTC-AGCAGTA---AA-----GATAAAG-GACGGTC------AATC----AACCGGAAACAAAT--GGTG--T-TT-T---TTT--TTGC--CT---TATC--ATA------C-AAATACCTCAGTATAAA-AAA--ACA
gi|35 : TTGATGGAAGTAATGCACGT---------GTATCTCAAAAATCGAAAGC----AAATCGGTAACTGACCGTTTATCTTCGGACACTTCACTGTAAATCTAAAA
gi|36 : A---AA-----G--TAAA-GACGGTC------AGTC----AACCGGAAACAAAT--GTTG--T-TA-T---TTT--TG-C--CT---TATCAAATATGAAATA-AAATACATCCGTTCAAATAAA--c
gi|37 : TTCAAAAATTGATGGAAGCAATGCACAT---------GCAGCTCAAAAA
gi|39 : ttttgtggttgtgttttttcttccc---AAAA---AAA---T-AGAGTC-GGTAGAAGAAAA-----AAATAGG-GATGGTC------AGGT----AACCGGAAACAAAgc
gi|4 : aaaTCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTAAAAAATTGATAGA----AAATCGGTCACTGAACACTTATCTCTGAACACTTTGCTGTAAATCTAGAATAT-TTGTT----AAATTACAAAA-TTGTATTATTTTAAAG-GGACATATCTCCATTTTATCACATTTTCACT-------TAAAGCAATT--TTTAAA----A--TTACT--------AA--GG---CCAA-A---TTA-ATATATCCGTTTCTTG-TTAGCCCGT---A-A---AA-AATA----TAG---TT-TATAC-CA-----------A----ATATGATTGTCTTTTCC---TTTTT-T-C-A----CTCTCGAT----GTACTAGTAATGTTCAGAG-CAAGCCGATCATT----G-GGA-----TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---CAGATTCACTGTACTGATCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TG------T--AT----TCAGGGC-AG-------TATT--TTC--------------TGTCTCTCTGTGCGGC-------------CATGTTTGATAT----CGTACAACACACACATTAGAATATT--CAAA-A-TCCG-CA---TTTTGTT--AATTATAATG---CAATG-----C--TT-T---GTAACGGAAATGATTTAGA-----TGAA--A--A-A--T-AA-A-TAACA--GTAA--GAAA--GTAATG---TTTT-----------------------------------------------AA---AAA---TCAGGGTC-GACTGTA---AA-----GATAAAG-TACGGTC------AACC----AACCGGAAACTTAT--GT-G--T-TT-T---TT-----GC--CT---TATCAAATATGAAATT-AAACAagtt
gi|40 : attgtgtttgtgtttttgttttattcccCAA-A---AAA-ATATGTGCCTTACTTG-TTGGCCCCTGA-A-A---AA-A--A----TCG---AG-TAG
gi|41 : CAA-A---A---ATATGTTC-TTTCTGG-TTAACCCCTG--A-A---AA-A--A----TAG---GG-TAGgtaagt
gi|5 : aaTCCAAAAATTGATGGAAGAAATGCACATACAAATTGTGTATCTAAAAAATCGATAGA----AAATCGGCCACCGGCCACTTATCTTCCAACACTTCACTGTGAATCTAAAATAT-TAATCTAAAAAATTACg
gi|5 : cgttttgtgtttgtgtattttctcctTTCCAACAC---TTCACTGTGAATCTAAAATA-TTAATCTAAA----AAATTACT--------TA--GG---CCCA-A---ATC-ATATATCCGTTTCTGG-TTAGCCCGT---A-A---AA-A--A----AAG---TG-TATAC-CA-----------C----GTATAATTGTCTTTT-CTTTTTTTT-T-C-A----CTGTCGAG----GTACTAGTAATGTTCAGAG-CA----------------------------A-G----T---TGTA--TGT----TG-------ACAAAGTTATATTACTAAAATAGGTATAT-TA---AAGATTCACTGTGCCGTTCT-GAATAAAAT-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG--------AAT--ATC--------------TGTCTCTCTGGGCGGC-------------CATGTTCGATAT----CGTGCAA-------ATTAGAATATT--CAAA-A-TCAA-CG---TTTCGT----------ATG---CATTG----TG--TG-T---GTAACGGGAATGTTTTAAA-----TGAA--A--A-A--T-AA-A-TAGCA--ATAA--GAAA--AAAATA---TTTTTG--ATT-----T-TTT----TTTT--T------AA-TTTGG---TAAC---GAA---T-ATGGTC-GGTAGTA---AA-----AATTAAG-GACGGTC------AACC----AACCAGAAACTTAT-----G--T-TT-T---TTT--TGGCTTTT---TATTAAATATGAAATT-AAATACCTTAGTATAAA-AAT--ACAAATCCAAAGAAATATCATTTTATttaggcccaaatcatatatccgtttctggttagcccgtaaaaaaaagtgtataccacgtataattgtcttttctttttttttcactgtcgaggtactagtaatgttcagagcaagttgtatgttgacaaagttatattactaaaataggtatattaaagattcactgtgccgttctgaataaaataataaccatttgttcggggcagaatatctgtctctctgggcggccatgttcgatatcgtgcaaattagaatattcaaaatcaacgtttcgtatgcattgtgtgtgtaacgggaatgttttaaatgaaaaataaatagcaataagaaaaaaatatttttgatttttttttttaatttggtaacgaatatggtcggtagtaaaaattaaggacggtcaaccaaccagaaacttatgttttttttggctttttattaaatatgaaattaaataccttagtataaaaatacaaatccaaagaaatatcattttatgattggtatacgacatt
gi|6 : cgttttgtgtttgtgtattttctccttccaaaaattgatggaagaaatgcacatacaaattgtgtatctaaaaaatcgatagaaaatcggccaccggccacttatcTCCAAAAACTGATGAAAGTTATGCACAT---------GTATCTCAAAAATTGATCGATAACAAATCAGCCACTGGCTACTT-TCTTTGAACTTTTTACTATAAATTTAAAATAT-ATGTT----TAATTACAAAA-TGTTATTATTTTAAAG-GGACACATTGCAATTTTATTACATTTTCACT-------AAAAGCAATT--TCTAAA----A--TTATT--------TA--TAATATTAA-ATCAATT-ATATATCCGTTTCTGG-TTAGCCCGT---G-A---AA-A--AAATATAA---TG-TAGAC-CA-----------C----GTATTATTGTTTTTT-T---TCTTT-G-T-T----TTTCCGAT----GTAATAGTACTATTCAGAG-CAAGCCAATCATT----G-GT------TGTA-G----T---TGTA--TGG----TA-------ACCAAGTTATATTATTGAGATAGGTATAT-TA---ATTATTTACTGTGCTGTTCT-TAATAACAA-T-------------------------TAGTA-C-----------CA---TT------T--GT----TCGGAAA-AG-------TATT--CTC--------------TGT-TCTCTAGGCGGC-------------CATATTTGATAT----CGTACAGTACACCCATTAGACTATT--CAAA-A-TACA-CA---TTT-GTT--AGGTATGATG---CAGAC----TC--TT-T---GAAACGGAAATGTTGCAGG-----TG-A--A--AGA--T-CA-A--AACG--A-------------AACA---C---------------T-TTT----TTTT--T------AA-TTTGG---GAAA---CAA---T-AGGGCC-GGCAGTA---AA-----AATTAAG-AACGGTC------AACT----AACCAGAAGCAAAT-----G--T-TT-T---CGT--TGGC--CT---TATCAAATATAAAATT-AAAgattggtatacgacatt
gi|7 : cccTGATGGAAGTAATGCACAT---------GTATCTCATA--TCGATAAA----AAA-AGGTCACTTACCACTTATCTTCGTACACTTCAATGTAAATCTTAGATAT-TAGTT----AAAGTACAAAA-TTTTATTATTTTAAAG-GGACACATCGCTATTTTAACCCATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------TA--GG---CCTA-A---ATA-ATATACCCGTTTCTGG-TTAGCCCGTA--A-A---AA-A--A----TAG---TG-TATAC-CA-----------C----GTATGATTG--TTTT-C---TTTTT-T-T-T----CTCCCGAG----GTAGTAGTAATGTTCAGAA-TAAGCCGATCATT----G-GT------TGTA-G----T---TTTG--TGT----TA-------ATCAAGTTATATTATTGAAATAGGTACATCTAATTAAGATTCACTGTGCTGTTCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TT------T--GT----TCAGGGC-AG-------TGTT--CTA--------------TGTGTCTCTGGGCGGC-------------CGGGTTTGATAT--------------ACACATTAGAATATT--CAAA-A-TCCA-CA---TTTTGTT--AGGTAAAATG---TAGTG----GC--TG-T---GTAACGGATATGGTTTGAA-----T--A--A--A-A--TAAA-A-TAAAA--ACAA--GAAA--ATAATG---TTTTTG--A-------T-TTTA---TTTT--T------AA-TTTGG---AAAA---AAA---T-ACAGTC-GGCAGTA---AA-----GATTAAG-GATGGTC------AACC----AACCGGAA--------------T-TT-T---TTT--Ta
gi|8 : ATCTCAAAAATCGATAGA----AATTCGATCACTGACCACTTATCTTCGAACACTTCTCTGTATATCTAAAATAT-AAGTT----AAATGA-AAAA-TTCTATTATTTTAAAG-GGACACATTGCGATTTTAATACATTTTCACT-------AAAAGCAATT--TCTAAA----A--TTAC---------------------------ACA-A-----CCATTTCTTG-ATAGCCAGT---A-A---AAGA--A----TAG---TG-TAGAC-CA-----------C----ATAT-----TCTTTT--------TT-T-C-A----CTCTCGAG----GTGCTAGTAATGTTCAGAG-CAAGCCGATCATT----G-GT------TGTA-G----T---TGTAGTTGTATCTTA-------ACCAAGTTAGGTTATTGAGATAGGTACAT-TA---AAGATTCACTGTGCTGTTCT-GAATAACAA-A-AA----------------------CA--A-A-----------CA---CT------T--GT----TCAGGGC-AG-------TATT--CTC--------------TGTATCTCTGAGTGAC-------------CATGTTTGATAT----CATAAAGCACACACATTAGAATAC---CAAA-A-TCCA-CA---TTTTGTT--AAGTATAATG---CAGTG----TT--TA-T---GTAACAGAAATAATTTAGA-----TG-A--A--A-A--A-AA-AATAAAA--ATAA--GAAA--GTAATG---TTTTTG--A-------T-TTT----TTTT--T------AA-TTTGG---GAAA---AAA---T-GGGGTC-GGCAGTT---AA-----GATTAAG-GACAGTC------AACC----AACCCAAAACTTAT--G--C--T-TT-T---TT-----GC--CT---TATCAAATATGAAATT-AAATAttt
gi|9 : TCCAAAAATTGATGGAAGTAATGCACAT---------ATATCTAAAAGATTGATAGA----AAATCGGTCACTGAACACTTATCTCTGAACACTTTGCTGTAAATCTAGGATAT-TTGTT----AAATTACAAAA-CTGTATTATTTTTAAG-GGACATATCGCCATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------AA--GG---CCAA-A---TTA-ATACATCCGTTTCTTG-TTAGCCCTT---A-A---AA-A--A----T-G---TT-CAGAG-CA-----------
gi|9 : tcccAATGTTCAGAG-CAAGCCGATCATT----G-GGA-----TG-A-G----G---TGTG--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---CAGATTCACTGTACTGATCT-GAATAACAA-A-A-----------------------TA--A-C-----------CA---TG------T--AT----TCAGGGC-AG-------TATT--TTT--------------TGTCTCTCTGTGCGGC-------------CATGTTTTATAT----CGTACAGCACACACATTAGAATATT--CAAA-A-TCCG-CA---TTTTGTT--AATTATACTT---CAATG-----C--TT-T---GTAACGGAAATGATTTAGA-----TGAA--A--A-A--T-AA-A-TAACA--ATAA--GAAA--GTAATG---TTTT----------------------------------------------GAA---AAA---TCAGGGTC-GCTTGTA---AA-----GATAAAG-TACAGTC------AACC----ATCCGGAAATTTAT--GT-G--T-TT-T---TT-----GC--TT---TATCAAATATGAAATT-AAATACagccgatcattgggatgaggtgtgtgttaaccaagttatattattgagataggtacattacagattcactgtactgatctgaataacaaaataaccatgtattcagggcagtattttttgtctctctgtgcggccatgttttatatcgtacagcacacacattagaatattcaaaatccgcattttgttaattatacttcaatgctttgtaacggaaatgatttagatgaaaaataaataacaataagaaagtaatgttttgaaaaatcagggtcgcttgtaaagataaagtacagtcaaccatccggaaatttatgtgttttttgctttatcaaatatgaaattaaatac
blockSeqs : ACAAATTGT TAAC A TAAA T T . A GTGAATC AA AACT AA AATAATATTA ATA T TCAAT T A GAA T AAT T AT AATG GCTT G ATACAATTTTCTTTCTC G T CTTT A A TTTTT ACCT T G CACCG T TGAACA T AACT CGC GT ATCT TATGTTA G TAT CT ATT G TAATAAAACTGTTTCAGTCCTATCA GT T AATGTTTCAGT ATG GTTGTC CAGTGATA G CTTTATT TA GATGGTATACGAGA TGGGGGTGGGAAT G ATGT A A AG T C G ATT TT TTT ACATTGTAAT C CTATTGAAAACAT T AT ATTATAAT TTGTAATGGGT GGGGGTTTTT GAAA GG GTTGGA TT GAA TAA AAA T T GAA AAAGT A TTAGTAG . AT TAGG CT G A ATA CATG TT GAC A T CC
blockSeqs : . . . . . T . T . . . . ATAAT . . AT . . GA . C G . AATA G . ACCACGCCT G G CC . . CG AT . A T . GAACA . . . . . TATGGTA C GAT T . . TAATNNNNNNNN GT . AG . . CCATCAAA . . . . . A . A A . . C . . . . ACATTGTAAT A TATATTGAAATT . T GTTAGCT GTAATC GAAAT A . TTGA A . . AAT C . . . . G . AA TGTT . . . . TT . . . T .
blockSeqs : . . . . . C . A . . . . AA . . AA . . TG . . . . GG G . ACCAC A G T . . C . . A C . A . . . . . CATGTA G GGT T . . TAA . . . . . CAGTCATA . . . . . G . A A . . G . . . . ACATTGTGAT A CGGCAGTAAT . A AATAA GTTAAG GGAAT . . GA A . . . C . . . . G . AA TGGT . . . . TA . . . . .
blockSeqs : . . . . . G . A . . . . TA . . AT . . GA . . . . . G . ACCAC T G C . . A . . A C . A . . . . . . A GGT T . . CAA . . . . . GTCTAC . . . . . G . A A . . . . . . . ACCAT C TGAAAAAT . T GACAA GTCTTC GATTT . . G A . . . . . . . . A . AA TGTT . . . . TG . . . . .
blockSeqs : . . . . . T . T . . . . TG . . AT . . G . . . . . G . ACCAC G G C . . A . . A A . . . . . . . . G GAT A . . TTA . . . . . CAC . . . . . G . A C . . . . . . . TCCGT G TACTAAAT . T GATAA GTAATG ATA . . . T . . . . . . . . G . AA TGT . . . . TG . . . . .
blockSeqs : . . . . . G . C . . . . TG . . AT . . A . . . . . G . TCCAC T G C . . T . . G T . . . . . . . . C GGT A . . TTA . . . . . GT . . . . . T . C N . . . . . . . TCTGT C TGAAAAAT . A AACAA ATCTCT GAT . . . T . . . . . . . . G . AA TGT . . . . TG . . . . .
blockSeqs : . . . . . T . A . . . . AA . . AT . . . . . . . . G . ACTAC T G C . . A . . A T . . . . . . . . G GGT T . . TAA . . . . . NN . . . . . N . N T . . . . . . . TCTTT G TGAAAAAT . T AATAA GTGATG GAT . . . T . . . . . . . . A . TT TGT . . . . TT . . . . .
blockSeqs : . . . . . T . T . . . . TA . . AC . . . . . . . . T . ACCAA T G C . . T . . G T . . . . . . . . G GGT T . . TAA . . . . . GT . . . . . T . C C . . . . . . . TCTGT G TGAAAGAT . T GTTAT GTAGTA GAT . . . T . . . . . . . . G . AA TT . . . . TT . . . . .
blockSeqs : . . . . . C . G . . . . TA . . AC . . . . . . . . T . ACCAC T G C . . A . . A A . . . . . . . . C GGT T . . AAA . . . . . GT . . . . . T . C A . . . . . . . TCTGT C TGAAAAAT . C AGTAA GTAATG GAT . . . T . . . . . . . . A . AA TG . . . . TG . . .
blockSeqs : . . . . G . C . . . . TA . . TT . . . . . . . . G . ACCAC T T C . . A . . A C . . . . . . . . C GGT T . . AA . . . . . GC . . . . . G . A C . . . . . . . ACCGT G TGAACAA . T AATAA AAAATA TA . . . T . . . . . . . . A . GT TG . . . . TG . . .
blockSeqs : . . . . . . AA . . AT . . . . . . . . T . ACCAC T G T . . A . . A C . . . . . . . . G GGT T . . TA . . . . . GT . . . . . G . C C . . . . . . . TGTGT C TGGAAAA . C AACAA ATAATG GA . . . T . . . . . . . . A . AA TG . . . . TG . . .
blockSeqs : . . . . . . . TT . . . . . . . . T . ACCAC T G T . . A . . T T . . . . . . . . G GGT T . . CA . . . . . GC . . . . . G . C A . . . . . . . TCTTT G TAAAATA . T AATAA GTAATG AT . . . T . . . . . . . . G . AA TG . . . . T . . .
blockSeqs : . . . . . . AA . . . . . . . . T . TTAG T G T . . A . . A T . . . . . . . . A GG T . . AA . . . . . AT . . . . . C . A C . . . . . . . GCTGT C TGAAAAA . T AATAA GTAATG T . . . T . . . . . . . . A . AA TG . . . . . . . .
blockSeqs : . . AT . . . . . . . . T . GTAT T G G . . A . . G T . . . . . . . . G C T . . AA . . . . . GT . . . . . T . C C . . . . . . . TTTAT G TGAACC . T GAAA AATT T . . . T . . . . . . . . A . TG G . . . . . . . .
blockSeqs : . AT . . . . . . . . T . ATAA T . T . . A . . A T . . . . . . . . A . T . . AA . . . . . GT . . . . . G . A A . . . . . . . CTTT G TGAAAA . T GATA TTTG T . . . T . . . . . . . . A . AA G . . . . . . . .
blockSeqs : . AC . . . . . . . . A . ATAG T . C . . T . . G T . . . . . . . . G . . . . AA . . . . . GT . . . . . G . A C . . . . . . . CTTT G AAAAT . T TAG AACA . . . . T . . . . . . . . A . AA T . . . . . . .
blockSeqs : . TT . . . . . . . . G . GTAG T . . . . T . . G T . . . . . . . . G . . . . AA . . . . . GT . . . . . T . C C . . . . . . . TAT G GT . T AA ATA . . . . . . . . . . . . . A . AA G . . . . .
blockSeqs : . A . . . . . . . . T . . . . . . . A . . G T . . . . . . . . . . . . . T . . . . . AT . . . . . C . C C . . . . . . . ACT A TG . . AA AA . . . . . . . . . . . . . A . AA G . . . .
blockSeqs : . A . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . T . C C . . . . . . . AC G T . . GA . . . . . . . . . . . . . . A . TT A . . . .
blockSeqs : . T . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . T . C C . . . . . . . T . . . G . . . . . . . . . . . A . TT T . . . .
blockSeqs : . A . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . A . AA T . . . .
blockSeqs : . . . . . . . . . . T . . . . . . . . . . . . . T . . . . . . . . . . . . . . . A . TT . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . A . TT . . . . .
blockSeqs : . . . A . A
blockSeqs : . . . . . .
blockSeqCons : T*** ACCAC**************** TAA************************ TGAAAAAT************* ****** **** TG**** TG**
originalCons : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTCAAAAATCGATAGA----AAATCGGTCACTGACCACTTATCTTCGAACACTTCACTGTAAATCTAAAATAT-TAGTT----AAATTACAAAA-TTNTATTATTTTAAAG-GGACACATCGCNATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------TA--GG---CCAA-A---ATA-ATATATCCGTTTCTGG-TTAGCCCCT---A-A---AA-A--A----TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---TTTTT-T-C-A----CTCTCGAG----GTACTAGTAATGTTCAGAG-CAAGCCGATCATC----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---AAGATTCACTGTGCTGTTCT-GAATAACAA-N-A-----------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATT--CTC--------------TGTCTCTCTGGGCGGC-------------CATGTTNGATAT----CGTGCAGCACACACATTAGAATATT--CAAA-A-TCCA-CA---TTTCGTT--AGGTATAATG---CAGTG----TC--TG-T---GTAACGGAAATGATTTAGA-----TG-A--A--A-A--T-AA-A-TAACG--ATAA--GAAA--GTAATG---TTTTTG--A-------T-TTT----TTTT--T------AA-TTTGG---AAAA---AAA---T-AGGGTC-GGCAGTA---AA-----GATTAAG-GACGGTC------GGCC----AACCGGAAACAAAT--G--G--T-TT-T---TTT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGTATAAA-AAA--ACAAATCCAAAGAAATATCATTTTATAT
finalCons : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTCAAAAATCGATAGA----AAATCGGTCACTGACCACTTATCTTCGAACACTTCACTGTAAATCTAAAATAT-TAGTT----AAATTACAAAA-TTNTATTATTTTAAAG-GGACACATCGCNATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------TA--GG---CCAA-A---ATA-ATATATCCGTTTCTGG-TTAGCCCCT---A-A---AA-A--A----TAGT---G-TAGACCAC----------------GTATGATTGTCTTTT-C---TTTTT-T-C-A----CTCTCGAG----GTACTAGTAATGTTCAGAG-CAAGCCGATCATC----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---AAGATTCACTGTGCTGTTCT-GAATAACAATAA------------------------TA--A-C-----------CA---TT------T--GT----TCGGGGC-AG-------TATT--CTC--------------TGTCTCTCTGGGCGGC-------------CATGTTNGATAT----CGTGCAGCACACACATTAGAATATT--CAAA-A-TCCA-CA---TTTCGTT--AGGTATAATG---CAGTG----TC--TG-T---GTAACGGAAATGATTTAGATGAAAAAT-------------AA-A-TAACG--ATAA--GAAA--GTAATG---TTTTTG--A-------T-TTT----TTTT--T------AA-TTTGG---AAAA---AAA---T-AGGGTC-GGCAGTA---AA-----GATTAAG-GACGGTC------GGCC----AACCGGAAACAAATG----G--T-TT-T---TTTTG--GC--CT---TATCAAATATGAAATT-AAATACCTCAGTATAAA-AAA--ACAAATCCAAAGAAATATCATTTTATAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): ATTAAGCACTATTGGAATTTCACATTCATTTTAAATTTCTTGCGGGACAACTCGTTTCCTAAGG
Unaligned ( gi|42 ): TGCGAGGGGGGTTGGCCTCAGAATAAATTAGGGCTGTCTAAAAAA
Unaligned ( gi|43 ): TATCATCATTTTAAATGTTTTAGCATTTTCACAGCTACATTAAAA
Alignments
lowQualScore : 111111111 1111111 111111111111 111 111111111111111111111 111111 1111111 22222222222222222222222222222222222222222222222222222222 11111111111111 2222222222222 1111111111 22222222222222 111111 111111
lowQualScore : 666666666 7777 0 3 7777 3 1 3 1 0000000 33 6666 33 333333333333 444 1 55555 1 0 1 0 333 1 444 3 22 9999 5555 1 666666666666666666666 1 0 3 0 88888 1 8888888 6666 1 1 99999 1 222222 1 3333 222 22 3333 5555555 3 66 22 333 6666666 1 0 1 88 99999999999999999999999999999999999999999999999999999999 1 5555555 22 00000000000000 0 9999999999999 1 3333 2 3 777777777 22 1 3 0 3 333 0 22 333 0000000000000 333 4 0 4444 0 22 2 44 1 0 0000000000 444 7777 55555555555555 6666 22 666666 33 333 1 888 3 1 222 33333 1 7777777 3333 11 999999 22 1 1 222 9999 33 444 0 2 0 8 66
lowQualScore : ......... .... . . .... . . . . ....... .. .... .. ............ ... . ..... . . . . ... . ... . .. .... .... . ..................... . . . . ..... . ....... .... . . ..... . ...... . .... ... .. .... ....... . .. .. ... ....... . . . .. ........................................................ . ....... .. .............. . ............. . .... . . ......... .. . . . . ... . .. ... ............. ... . . .... . .. . .. . . .......... ... .... .............. .... .. ...... .. ... . ... . . ... ..... . ....... .... .. ...... .. . . ... .... .. ... . . . . ..
lowQualScore : 000000000 7777 5 3 1111 6 0 6 0 0000000 99 1111 99 777777777777 777 7 00000 7 6 7 5 111 7 666 3 33 4444 0000 7 777777777777777777777 5 6 9 2 44444 8 8888888 4444 9 2 11111 7 333333 7 7777 999 33 5555 6666666 0 11 33 333 2222222 9 5 9 11 00000000000000000000000000000000000000000000000000000000 7 4444444 33 22222222222222 3 2222222222222 0 5555 4 0 333333333 55 7 5 5 5 000 2 44 222 0000000000000 222 7 5 2222 2 99 1 33 9 1 3333333333 888 4444 66666666666666 2222 88 777777 66 222 7 888 3 7 777 88888 5 4444444 3333 99 111111 33 7 7 999 4444 22 111 8 5 1 9 11
consensus : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTCAAAAATCGATAGA----AAATCGGTCACTGACCACTTATCTTCGAACACTTCACTGTAAATCTAAAATAT-TAGTT----AAATTACAAAA-TTNTATTATTTTAAAG-GGACACATCGCNATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------TA--GG---CCAA-A---ATA-ATATATCCGTTTCTGG-TTAGCCCCT---A-A---AA-A--A----TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---TTTTT-T-CA----CTCTCGAG----GTACTAGTAATGTTCAGAG-CAAGCCGATCATC----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---AAGAT-------TCACTG-TGCTGTTCT-GAATAACAA-TAATAA------------C-----------C----------A---TT------T--GT----TCGGGGC-AG-------TATT--CTC--------------TGTCTCTCTGGGCGGC-------------CATGTTNGATAT----CGTGCAGCACACACATTAGAATA---------TT--CAAA-A-TCCA-CA---TTTCG--TTAGGTATAATG---CAGTG----TC--TG---T---GTAACGGAAATGATTTAGA----TGAAA--A-AT-AA-ATAACG--ATAA--GAAA--GTAATG---TTTTTG--A-------T-TTT----TTTT--T------AA-TTTGG---AAAA-AAA---T-AGGGTC-GGCAGTA---AA-----GATTAAG-GACGGTC------GGCC----AACCGGAAACAAAT--G--G--T-TT-T---TTT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGTATAAA-AAA--ACAAATCCAAAGAAATATCATTTTATAT
Reference ( family-492 ) : TCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTCAAAAATCGATAGA----AAATCGGTCACTGACCACTTATCTTCGAACACTTCACTGTAAATCTAAAATAT-TAGTT----AAATTACAAAA-TTNTATTATTTTAAAG-GGACACATCGCNATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------TA--GG---CCAA-A---ATA-ATATATCCGTTTCTGG-TTAGCCCCT---A-A---AA-A--A----TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---TTTTT-T-CA----CTCTCGAG----GTACTAGTAATGTTCAGAG-CAAGCCGATCATC----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---AAGAT-------TCACTG-TGCTGTTCT-GAATAACAA-TAATAA------------C-----------C----------A---TT------T--GT----TCGGGGC-AG-------TATT--CTC--------------TGTCTCTCTGGGCGGC-------------CATGTTNGATAT----CGTGCAGCACACACATTAGAATA---------TT--CAAA-A-TCCA-CA---TTTCG--TTAGGTATAATG---CAGTG----TC--TG---T---GTAACGGAAATGATTTAGA----TGAAA--A-AT-AA-ATAACG--ATAA--GAAA--GTAATG---TTTTTG--A-------T-TTT----TTTT--T------AA-TTTGG---AAAA-AAA---T-AGGGTC-GGCAGTA---AA-----GATTAAG-GACGGTC------GGCC----AACCGGAAACAAAT--G--G--T-TT-T---TTT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGTATAAA-AAA--ACAAATCCAAAGAAATATCATTTTATAT
gi|1 : ATCTCAAAAATCGATAGA----AATTCGATCACTTACCACTTATCTTCGAACACATCTCTGTAAATCTGAAATAT-TAGTT----AAATCACAAAA-TTGTATTATTCTAAAATGGACACATCGCTGTTTTAATACATTTTCATA-------TAAAGCAAAT--TCTAAC----A--TTACT--------TA--GG---CCAA-A---GTA-ATATATCCGTTTCTGG-TTAGCCAAT---A-A---AA-A--A-----------A-TA-----A-----------C----GTATAATTATCTTTA-C---TTTTT-T-CA----CTGTCAAG----GTTCATGTAATGTTCAGGG-CAGACCGATCATT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACCAAATTATATTATT----TAGGTACAT-TA---AATAT-------TCACTG-TGCTGTTCC-GAATAACAA-AAATAA------------G-----------C----------A---TT------T--GT----TAGGTAC-AG-------TATT--TTC--------------TGTCCCTCTGAGCGGC-------------CACGTTTGATAT----CGTGCAGCACACAGATTAGAATA---------TT--CAAA-A-TCCA-TA---CTTGT--TTAGGTAAAATG---CAGTT----TT--TT---T---GTTACGGAAATGATTAAGA----TGAAA--A-GT--A-ATAACA--ATTA--GGAA--ATAATG---CTTTTT--T-------T-TTT----TTTT--TTA----AA-TTTGG---GAAA-AAA---T-AGGACA-GGCAGTA---AA-----TATAAAG-GACGGTC------AACCAACTAACCGGAAACTTAC--G--C--C-TT-T---TTT----GC--CT---TATCAAATATGAATTT-AAATACCTCAGTATCAA-AAA--ACTAATCCAGAGAAATAACATTTTATAT
gi|10 : -A---ATA-AAATGTTCATATCTAGATGGGGCTCT---A-A---AA-A--A----AAG---GG-TAG-T-TA-----------G----GTAGGATT---TTTT-------------------CTCTCAAA----ATACCATTAATGTCGAAAT-CAAGCTGATCATT----G-GT------TGTG-GAACTT---TGCT--TGT----TA-------ACCAAGTTATGTTACTGAGA----TATTT-TA---AAGAT-------TCATTG-TATTATTCT-GAATAACAG-TAATAA------------CAG---------T----------G---TT------TCAGTGATATCAGGGT-GG-------GGTTTACTTGATGGTATACGAGATGTCACTCTGGGCATT-------------TATGTTGGATAT----CG-GCAGCAAAGAAATAAGAGTA---------TT--CTGA-A-TACA-GA---TTTTGTTTTAGGTATAATG---GAGTG----AC--CA---T---GTAATGGAAATCATTTAGA----TGAAC--A-A--AA-A---------AA--GACA--ATA-------------------------TT----TTTT--T------AA-ATTGG---AAAA-AAA---T-AGGATC-AACAGTA---AA-----AATTAGG-AACAGTCTTAGTAGGTC----AACCAGAAACATTT--T--T--T-TT-TATATTT--TTGC--CT---TATgttaaaacattttcacaggtacattcaaaactaacatgacttct
gi|11 : ggcttCAA-A---AAA-AT-TGTTTGTTTCTGG-TAAGCCTCTGA-A-A---AA-A--A----TAG---GT-TAGGT--A-----------T----GTAGGCTTTTTTTTT-T---TTTTT-T-TTTTTTCTCCCGAGACCTGTACTTTTAATGTTCAAAT-CAAG----TCATC----A-GT------TGTA-G----C---TGTA--TGT----TATATGTTAACCATGTTATATAATTGACATA---------A---AATAT-------TCATTA-TCCTGTTCT-GAATAGCAA-TAATAAAACTGTTTCAGTC-----------CTATCATGACGA---CT------T--GTCTACTCGGAGC-AG-------AA-----TC--------------TGTCACTCTTGGTGGC-------------CATGTTAAATAT----CGTGCAGCAAACAAATTAGTGTA---------TT--AAAA-ACTCAA-CA---TTTCG--TTAGGCATAATG---TAGTG----ACATTGTAAT---GTGATGGAAAT--TTTA-A----TGAAC--C-AA-AA-ACAA------------------AAT----TTTTAT--A-------TATTT----TTTC--G------AA-ATTGA---AAAATAAAAATT-AGGGTC-ACCAGTA---AA-----AATTAGG-GACAGTC------GGCT----AACTGGAAACAAA------G--T-TT-T---TTT--Taacaccatataacataaa
gi|12 : gg---CCAA-A---ATATATATATTTATTTCTGG-TTGGCTCCT---G-GC--AA-A--A----TAG---GG-TAGAT-AA----------------GTAAAATT----------------T-T-CC----CCCATGAG----ATACTAGTAATGTTCAAAC-CAAGCCAATCATC----G-GC------TGTA-G----T---TGTA--TGT----TT-------ACTTAGTTATATGTTTGAGATATATACAT-TA---AAGAT-------TCATAT-TACTGTTCTGGAATAGCAA-CAATAA------------CAATGTTTCAGTC----------A---TT------TC-AC----CTGGGTC-AG-------TACT--CTC--------------TGTCTCTCTGGACGGC-------------CATGTTGGATTC----CGTGCAACAAACAAATAAGACTA---------TT--GAAA-A-CATA-CA---TTTCG--TTAGt
gi|12 : a----TC--CG---T---GCAAC--AAACAAATAAGACTATTGAAA--ACAT-AC-ATTTCG--TTAGCTGAAA--TT--TG---TTTTT-----------T-TTC----TTTT--TG-----AA-ATTGG---GGAA-AAA---T-AGGATC-AGCAGTA---TA-----AGTTAAG-GACGGTC------GGCC----AACCGGAAAAAAAT--G--C--A-TT-T---TTT----GC--CTGACTAT-AAATAT--AATT-AAActgaaatttgttttttttctttttgaaattggggaaaaataggatcagcagtataagttaaggacggtcggccaaccggaaaaaaatgcattttttgcctgactataaatataattaaaa
gi|13 : accaaaatatatatatttatttctggttggctcctggcaaaatagggtagataagtaaaattttcccccatgagatactagtaatgttcaaaccaagccaatcatcggctgtagttgtatgtttacttagttatatgtttgagatatatacattaaagattcatattactgttctggaatagcaacaataacaatgtttcagtcatttcacctgggtcagtactctctgtctctctggacggccatgttggatA-A---ATA-AT-TAT--GTTTTCGG-TTAATCCCT---G-A---AA-A--A----TAG---GG-TATATACAATTTTCTTTCTC----TTTTGTTTGTCTTTT-----TATTT-T-CA------CCCGAT----GTTCTAGTGATGTTTATAG-CAAGTAAATCACCACCGG-GT------TGTA-A----C---TGTA--TGG----CA-------ATCAAGCTCTATTATTTAAATTGATACGT-TA---AAGAT-------TTATTG-TACTGTTAT-CATTAACAC-TTATAA------------C-----------T----------T---TT------TCCATCAAATCAGGATGAGCTTTATTTATT--CTC--------------TGTCACTCTGGACGGC-------------GATATTGAATAT----CGTACAGCAAACA------AA-A---------TT-----A-A-TACA-CA---TTTCA--TAAAGTAT-ATG---CAGCG----AC------------TAACAAAAAAAATTTATA----Ta
gi|13 : g------AA-TT------AGAA-AAC---T-AGGACA-TGCAGTA---AA-----AAATACG-AACGGTC------AACC----TACCAGACATAAA---G--G--T-AT-T---TTT--atattgaaattagaaaactaggacatgcagtaaaaaatacgaacggtcaacctaccagacataaaggtattttt
gi|14 : gaaataattatgttttcggttaatccctgaaaaatagggtatatacaattttctttctcttttgtttgtctttttattttcacccgatgttctagtgatgtttatagcaagtaaatcaccaccgggttgtaactgtatggcaatcaagctctattatttaaattgatacgttaaagatttattgtactgttatcattaacacttataactttttccatcaaatcaggatgagctttatttattctctgtcactctggacggcgatattgaatatcgtacagcaaacaaaattaatacacatttcataaagtatatgcagcgactaacaaaaaaaatttatatatattgaAA-A---A-A-AGATGTTCATATCTGG-TCAGCC------------AG-A--A----TAG---GG-TAGAT--A-----------G----GTAGG-----------C---TTTTT-TACA----TTGTCCAGAT--GTACATTTAATGTTCAAAT-CAAGTCAGTCATA----G-GT------TGTA-G----CCGCTGTA--TGC----TATATGGTAATCACCTTATATAAT-------GG-ACAT-AA---AAGAT-------TCATTG-TACTGTTCT-GAAAAGCAA-TTATAA------------A-----------G----------AATGTT------TCAGTCATATCAGGAC-AA-------TGTC--TGC--------------TG---CTCTGGGTGGC-------------CATGTTGGATAT----TGTGCAACAAACAATTTAGTATA---------TT--AAAA-A-CTCAGCA---TTTCG--TTAGGCATAATG----------------TA---T---ATAATGAAAATCATTT
gi|14 : ---TTTTTG--AAA-----T-TTT----TTTT--TGTTGGAAA-TTTGA---AAAA-AAAAAAT-AAGGTTTGGCAGTA---AA-----AAATGGG-GACGGTT------GGCT----AACCAGAAGCAAAtatttttgttttttgaaatttttttttgttggaaatttgaaaaaaaaaaataaggtttggcagtaaaaaatggggacggttggctaaccagaagcaaa
gi|15 : aaaaaagatgttcatatctggtcagccagaatagggtagataggtaggcttttttacattgtccagatgtacatttaatgttcaaatcaagtcagtcataggttgtagccgctgtatgctatatggtaatcaccttatataatggacataaaagattcattgtactgttctgaaaagcaattataaagaatgtttcagtcatatcaggacaatgtctgctgctctgggtggccatgttggatattgtgcaacaaacaatttagtatattaaaaactcagcatttcgttaggcataatgtatataatgaaaatcattttatttttgtAA-A---A-A-ATATGTTCGTTTCTGG-TTAGCCCCCTG-ATA---AA-A--A----TAG---GG-TAGGT--A-----------G----GTAT-----TTTTTT-C---GTTTTAT-TT----CTCCCGAG----TTACTATTTATGC-CTGATTCAAGTCAATCAT------------------A-G----T---TGTA--TGT----TA-------ACCATGTTATATAATT----TA--CACAT-AA---AAGATCTGAATATCAATAATNNNNNNNN-NNNNNNNNN-NNNNNN------------N-----------N----------N---NN------N--NN----NNNNNNN-NN-------NNNN--NNN--------------NNNNNNNNNNNNNNNN-------------NNNNNNNNNNNN----NNNNNNNNNNNNNNNNTAGAGTA---------TT--CAAA-ACTCAA-CA---TTTCC--TTAGGCATAATG---TA--------------------GTGAC-------ATT-----------------GT-AATATAATG--------------GTAATC---ATTTTG--A-------T-CATGAAATTTT--T------AA---------AAAA-AAA---T-AGCATT-TGCAATA---AA-----GA--AAGAGACGGTC------GGCT----AACCGTAAACAAAT--GT-G--T-TT-T---TTT--T
gi|16 : ---TTTTT-T-CA----CTCTCGAG----ATACTAGTAATGTCCAGAG-CAAGTCGATCATT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACTAGGTAATATTGTTGAGATAGGTACAT-TG---AAGAT-------TCACTG-TGCTGTTCT-GAATAACAA--AATAA------------C-----------C----------A---TT------T--GT----TACGGGC-AG-------TATT--TTC--------------TGTCTCTCTGGGCGGC-------------CATGTTTGATAT----CTTGCAGCACACACATTAAAATA---------TT--CAAA-T-TCCA-CA---TTTTG--TTAGGTATAATG---AAGTG----TC--TG---T---GTAATGGAAATGATTCAGA----TGAAA--A-AT-AA-ATAATA--ATAA--GTAA--GTTAAG---TTTTTT--A----------TT----TTTT--T------AA-TTTAG---GAAA-AAA---T-AGTGTC-GACAGTT---AA-----GATTAAG-GACGTTC------AACC----AACCGGAAACTTAT--G--GCTT-TT-T---TTT--TAGC--CT---TATCAAAAATGAAATG-AAATAtt
gi|17 : t---TATA--TAT----TA-------ACCATGTTGCATAATTGACATA---------A---AAGAT-------TCATCA-TACTGTTCT-GAATAGCAA-TAATNN------------N-----------N----------N---NN------N--NN----NNNNNNN-NN-------NNNN--NNN--------------NNNNNNNNNNNNNNNN-------------NNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT--CAAATC-TCAA-CA---TGTCG--TTAGGCATAATGTTTCGGTA----ACATTG---TAATGTAATGGAAATCATTTTT-----TG------------------G--ACAA--AAAA--GTCTTC---TTTTT-------------TTT----TCTT--TGA----AA-TTTGA---AAAA-TAA---T-AGGATC-GGCATTA----------GGTTAGG-GACGATC------GTCT----AACCGGAAACAAA---G--T--T-TT-T---TTT--TG
gi|18 : atgtttaccttttcgtcatgtcgtaatttgtatgctgattacgttgtcaggccaacaaaactttcgtgtc-GT------TGTA-G----T---TGTA--TGT----TACATGTA-ACCAAGTTATATTATTTAGATAGGTATAT-TA---AATAA-------TCACTG-TGTTATTCT-AAATAACAA-TAAGTA------------C-----------C----------A---TT------T--GT----TTGAGGG-AG-------TATT--CTC--------------TGT-TCTCTAGGCGGT-------------CATATTTGATAT----CGTACAGTACACATATTAGAATA---------TC--CAAG-A-TACA-CA---TTTTG--TAAGGTATTATG---CAGAC----TC--TT---T---GAAACGTAAATGTTTCAAA----TGAAA--A-AC-AA---AACG--A-AA--CAA------------TTTTT-----------T-TTT----TTTT--T------AATTTTGG---GAAA-CAA---T-AGGGCC-GGCAGTA---AA-----GATTAAG-AACGGTC------AACC----AACCAGAAACAAAT-----G--T-TT-T---CGT--TGGC--CT---TATCAAATATAAAATA-AAAT-CTTCAGTGTAAA-AAA--ACGATTCCATAGAAAt
gi|19 : TCCAAAAACTGATGGAAGTAAAGCAGAT---------GTATCTCAAAAATCGATAAC----AAATCAGCCACTGGCTACTT-TCTTCAAACACTTTACTGTAAATTTAAAATATATGTTT----AAAT-ACAAAA-TGTTATTATTTTAAAG-GGACACATTGCAATTTTATTACATTTTCACT-------CAAAGCAATT--TCTAAA----A--TTACTAATAATATTA--AA---TCAA-A----TA--TATATCCGTTTCTGG-TTAGCCCCT---G-A---AA-A--AAATGTAG---TG-TAGAC-CA-----------C----GTATTATTGTTTTTT-C---TTT-----------------------GTACTA------TTCAGAG-TAAGCCAATCATT----G-GT------T
gi|2 : tttatgttcgagtttttttcttcccTCCAAAATTGGATGGAAGTAATGTACAT---------GTATCTCAGAAGTCGATAGA----AAATCGATCACTGACCACTTTTCTTCGAACACTTCACTGTCAATCTAAATTAT-TAGTT----AAATTACGAAA-TTTTATTATTTTAAAG-GGATTCATCGCTATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------AA--GG---CCAA-A---ATA-ATATATCCGTTTCTGG-TTAACTCGT---A-A---AA-T--A----TAG---TG-TTTAC-CA-----------C----GTATGCTTGTCTTTT-C---TTTTT-TCCG----CTCTCGAG----GTACTAGTAATGTACAGGG-CAAGCCGATCGTT----G-GT------TGTA-G----T---TGTA--TGT----TA-------ACAAGGTTATATTATAAAGATAGATACGA-TG---AAGAT-------TCACTG-TGCTGTTCT-GAATAACAA-C-ATAA------------C-----------C----------A---TT------T--GT----TCGGGGC-AG-------TATT--TTC--------------TGTCTCTCTGGGCGGC-------------CATGTTTTATAT----CTTACAGCACACACATTATAATA---------TT--CAAA-A-CCCA-CG---TCTTG--TTAGGTATAATG---CAGTG----TC--TG---T---GTAACAAAAATGATTCAGA----TACTA--A-AT-AA-ATAACG--ATAA--GAAA--GTAATG---ATTTTG--A-------T-ATG----TTTT--T------AA-TTTAG---AAAA-AAA---T-AGGGTA-GGCAGTA---AA-----TATTAAG-GACGTTC------AACC----AACCAGAAACGTATAGG--G--T-TTAT---TTT--TGGC--CT---TATCAAATATGAAATT-AAATACCTCAGTATAAA-AAACCCCAAATCCAATGAAATATCATTTTATAT
gi|20 : ---A-A---AA-A--A----TAG---GG-TAG---------------------GTA-GGTT-TCTTC--C---TTTTT-T-TT----CTCCCGAG----GTGCTCTCAATGTTCAAAT-TGAGTGAATCATA----A-GA------GGTA-G----C---TGTA--TGT----TA----------TAGTTA----ACTGACATA---------A---AAGAT-------TCA------TTGTTCT-GAATAGCAA-TTAT
gi|21 : gaa------TGCA-G----C---TGTA--TGT----TA---------TATGTTATACAATTGACATA---------A---AAGAT-------TTATTG-CACTGTTCT-GAATAGCAA-TAATAA------------A-----------A----------A---TTGTTGTCT--GC----TTGGGGT-AT-------TATT--CTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtgtattcaaaacattttgttagtcattatgtagtaacattgtaatgttatggaaatc
gi|21 : A-GTAACATTATAAT-GAAA--ATCTCT---TTCTTGGAA-------T-TTT----TTTT--TTTGA--AA-TTTGC---AAAA-AAAAATT-AGGGTC-GGCAGTA---A----------AAA-GACGGTC------AGCT----AACCGGAAACAAA---G--G--T-TT-T---TTTCATGGC--CT--------AATATGAAATT-gtcatactgtaaactcattatttcattaggcatataatcgtagtaacattataatgaaaatctctttcttggaatttttttttttgaaatttgcaaaaaaaaattagggtcggcagtaaaaagacggtcagctaaccggaaacaaaggtttttttcatggcctaatatgaaatttcatgatcaaaaa
gi|22 : tgcagctgtatgttatatgttatacaattgacataaaagatttattgcactgttctgaatagcaataataaaaattgttgtctgcttggggtattattctgtcatactgtaaactcattatttcattaggcatataatcgt-GC------TGTATG----T---TATA--TGT----GA-------ATCATGTTATAAAACTGA--------CAT--A---AAGAT-------TCATTG-TACTGTTCT-GAATAGCAA-TAATAA-----------------------------------A----------------------------AA-------CGTT--GTC--------------TG-----CTTGGTGGC-------------CATATTGGAAAT----TGTACAGCAAACAAATGAGTGTA---------TT--CAAA-A-GGCAACA---TTTCA--TTAGGCATAATA---TGGTGACATTG--TGA--T---GTAAAGGAAATCATTTTGA----T---------------CAACA--ACAA--AAAA----AAT--------TG--A-------A-C-------------------AA---------AAAA-TAA---T-AGGGTC-GGCAGTA---AA-----AATTAGG-GGCGGTC------GGCT----AACAGGAAACAAA---G--G--T-TG-T---TTT--tcatgatcaaaaa
gi|23 : gtaCACTGACCATTTATCTTTGAACACTTCACTGTAAACCTAAAATAT-TAGTT----AGATTACAAAA-TTCTATTAGTTTAAAG-GGACACATTGCAATTTTAACACATTTTCTCT-------TAAAGGAATT--TCTAAA----A--T-----------------------AA-A---------ATATCCGTTTCTGG-TTA---CCT---A-A---AATA--AGG--TAG---TG-TAGAC-CA-----------C----GTATGATTGTCTTTT-C---CTTTT-T-CA----CTCTCGAG----GTACTAGTAATGTTCAGA
gi|24 : -A-TCTA-CA---TTTTG--TTAGGTATAATG---CAGTG----TC--TG---T---GGTACAGAAATGATTTAGA----TGGAA--A-A--AG-ATAAC--------------------------------A-------T-TTT----TTTT--T------AA-TTTGGGAAAAAA-AAA---C-AGGGTC-AGCAGTA---CA-----GATTATA-GATGGTC-------ACC----AACCGGAAGC-ATT--G--G--TGTG-T---TGT--TTGT--CT---TATCAAATATAATATT-AAGTACATCAGAAT--A-AAA--ACAAATGCAAAGAAATATCGTTTTGTATtccatatattgttaagcattttaacaggtacattca
gi|25 : gCAGTCACTGTCCATTTATCTTCGAACACTGCACTGTAAATATAAGATAT-AGGTT----AAATTACAAAA-TCGTATCATTTTAAAA-GGACATCTCGCAATTTTAACACATTTTCACT-------TATAGCAATT--TCTAAA----A--TGACT--------TA--GG---CCAATA---ATA-ATATATCCGTTTCTGG-TTAGTTCCT---A-AAATAA-A--G----AAG---TG-TAGAC-CA-----------CGCCTGTATGATTGTCTTTT-C---CTTAT-T-CA----CTCTCGAG----GTACAAGTAATGTTttataagcattttcacaggtacattaaaa
gi|26 : -------TAAAGCAATT--TCTAAA----A--TTAAT--------TG--GG---CGAA-A---ACA-A-ATGTCCGTTTCCGA-TTAGCTCCT---G-A---GT-A--A----T-----TC-TAGTC-CA-----------C----GTATGATTGTCTTTT-T---TTCTT-T-CA----------AG--------TAGTAATGTTCAGAG-CACGCCAATCATC----A-GTTGAACATGCA-G----T---TGTA--TGT----TG-------ACCAAGTTATATTA
gi|26 : A-TATTAAT-----------C-----------C----------A---AT------T---T----TCAGTGC-AT-------TATT--TTC--------------TTTCTCTCTGGGCGGC-------------CATGTTGGATAT----TGGGCAGCACACGCATCAatccaattttcagtgcattattttctttctctctgggcggccatgttggatattgggcagcacacgcatca
gi|27 : taaagcaatttctaaaattaattgggcgaaaacaaatgtccgtttccgattagctcctgagtaattctagtccacgtatgattgtctttttttctttcaagtagtaatgttcagagcacgccaatcatcagttgaacatgcagttgtatgttgaccaagttAATT--TCTAAA----A--TTAAT--------TG--GG---CGAA-A---ACA-A-ATGCCTGTTTCCGA-TTAGCTCCT---G-A---TT-A--A----T-----TC-TAGAC-TA-----------C----GTATGATTGTCTTTT-T---T-------------CTCTCCAG--------CAGTGATGTTCAGAG-CACGCAAATCATC----ATGTGAACA-TGCA-G----T---TGTA--TTT----TG-------ACCAAGTTATATTA
gi|27 : AA------------C-----------C----------A---AT------T---T----TCAGTGC-AG-------TATT--TTC--------------TTTCTCTCTGGGCGGC-------------CATGTTGGATAT----TGGGCAACACACGCAaaccaattttcagtgcagtattttctttctctctgggcggccatgttggatattgggcaacacacgca
gi|28 : aatttctaaaattaattgggcgaaaacaaatgcctgtttccgattagctcctgattaattctagactacgtatgattgtcttttttctctccagcagtgatgttcagagcacgcaaatcatcatgtgaacatgcagttgtattttgaccaagttatatta----TTGGGGC-AG-------AACT--CTT--------------TGTCACTCTTGGAGGC-------------AATGCTCGATAT----GATCCAGCAAACAAATTAAGA-G---------TTAGCAAA-T-TACA-CA---TTTCG--TTAGGTATAACG---AGGTG----AC--CG---T---GTCATGGAAATCATT
gi|29 : taaagatttattgataaataataaaatcttttcagttataccaggaagtgttctacA---AA-----G--TAAA-GACGGTC------AGTC----AACCGGAAACAAAT--GTTG--T-TA-T---TTT--T-GC--CT---TATCAAATAT-AAATTAAAATACATCCGTTCAAATAAA--ACATATACAAAGAAATATTATTTTATAT
gi|3 : TCCAAAAATTGATGTAAGTGTTGCACAT---------GTATCTCAGAAATCGATAGA----AGTTCGGTCACTGACCACTTATCTTCGAACACTTCACAGTTAATCTAAAATAT-TAG-T----AAATTACAACATTTTTATTA-TTTAAAG-GGACACATCGCTTTTTTAACACATTTTCACT-------TAAAGTAATT--TCTAAAAACTA--TAACTA-------TAATAG---TCAA-A---TTA-ATATATACGTTTCTGG-TTAGCCCGT---A-A---AA-A--A----TA-----------------------------------GATTG----TT-T---TTATT-T-CA----CTTTCGAG----GTTCAAGTAATGTTCAGAG-CAAGCCTATCATT----G-GT------TGTA-G----T---TTTA--T--------------------GTTATATTATTGAGGTAGGTACAT-TA---CAGAT-------TCACTG-TACTGCTCT-GAATTACAA--AATAA------------C-----------C----------A---TT------T--GT----TCAGGGC-AG-------TATT--CAT--------------CGTCTCTAT--ACGGC-------------CTTGTTTGACAC----CGTACAGCACACACATTAGAATA---------TT--CAAA-A-TCCA-CA---TTTTG--TTTAGTATAATT---CAGTA----T---------------------AT------GA----TGAAA--A-AT-AA-ACAACA--ATAA--GAAA--GTGATG---Tgtttatgaatttccactgatacaatcaaaattatcatgacttc
gi|3 : ttctgtgtttgtgttgttttctcAA-AAA---T-AAA--C-AACAATA---AGAAAGTGATGTAG-AACGGTC------AGTC----AACCG-AAACTGAT--G--G--T-TT-T---TTT----AC--CT---TATCAAATATGAAATT-AAATACCTCAGTAAAAA-AAA--ACAAATCCAAAGAAATATCATTTCATATagaacggtcagtcaaccgaaactgatggtttttttaccttatcaaatatgaaattaaatacctcagtaaaaaaaaacaaatccaaagaaatatcatttcatatgttcaagcattttccggacacatctattcaaaactaacatgactgca
gi|30 : ttctgtgtttgtgttgttttctctccaaaaattgatgtaagtgttgcacatgtatctcagaaatcgatagaagttcggtcactgaccacttatcttcgaacacttcacagttaatctaaaatattagtaaattacaacatttttattatttaaagggacacatcgcttttttaacacattttcacttaaagtaatttctaaaaactataactataatagtcaaattaatatatacgtttctggttagcccgtaaaaaatagattgtttttatttcactttcgaggttcaagtaatgttcagagcaagcctatcattggttgtagttttatgttatattattgaggtaggtacattacagattcactgtactgctctgaattacaaaataaccatttgttcagggcagtattcatcgtctctatacggccttgtttgacaccgtacagcacacacattagaatattcaaaatccacattttgtttagtataattcagtatatgatgAA-C-TCAA-CA---TTTCG--TTAGGCATAATG---gttcaagcattttccggacacatctattcaaaactaacatgactgca
gi|30 : ag-ATAATG--TTAT--GAGATTGTAATGGGTTTTTTG--GGGGTTTTT-TTT----TTTTGGT------AA-TTTGG---AGAA-AAA-----AAGGTC-AGCAGT-----------CATT----GGCAGTC------AGCT----AACTGTAAACAAA---A--A--T-TT-T---TTT--Tttatgagattgtaatgggttttttgggggttttttttttttggtaatttggagaaaaaaaggtcagcagtcattggcagtcagctaactgtaaacaaaaatttttttttt
gi|31 : agaactcaacatttcgttaggcCGGC-------------CATGTTGGATATATGTTGTGCAGTAAACACATTACAGTA---------TT--CAAA-A-T--A-CAATTTTTCG--TTAGGTATAATA---CAGTG----AC-------T---GTAATGGAATTCGTTCTGA----CGGCAGTA-AT-AA-ATAA-G--AT-A--TAAA--GTAGTA---TTGTTtt
gi|32 : A-A---ATA--TATGTTCGTTTCTGG-CTAGCCCCTGAAA-A---AA-A--A----TAGGCTTGGTAG---------------------GTA-GGTTTTAATTT-G---TTTTC-T--A----C---CAAG----ATACTATTGATGTTTAAAT-CAAGTCAGTCATT----G-GT------TGTA-G----C---TGTA--TGT----TA-------
gi|33 : caaag---TC------T--GC----TTGGGGC-AG-------TATT--CT----------------ATCACTCTGAGGGGCTGGGGGTGGGAATCATGTTGGATAT----TGTGCAAAAAACAAATTAGTGTA---------TT--tata
gi|34 : aaaaatagggtaggaaaaatgtttcagtcgtatcagtacattgA-AAA---C-AGGGTC-AGCAGTA---AA-----GATAAAG-GACGGTC------AATC----AACCGGAAACAAAT--GGTG--T-TT-T---TTT--TTGC--CT---TATC--ATA------C-AAATACCTCAGTATAAA-AAA--ACA
gi|35 : TTGATGGAAGTAATGCACGT---------GTATCTCAAAAATCGAAAGC----AAATCGGTAACTGACCGTTTATCTTCGGACACTTCACTGTAAATCTAAAA
gi|36 : A---AA-----G--TAAA-GACGGTC------AGTC----AACCGGAAACAAAT--GTTG--T-TA-T---TTT--TG-C--CT---TATCAAATATGAAATA-AAATACATCCGTTCAAATAAA--c
gi|37 : TTCAAAAATTGATGGAAGCAATGCACAT---------GCAGCTCAAAAA
gi|39 : ttttgtggttgtgttttttcttccc---AAAA-AAA---T-AGAGTC-GGTAGAAGAAAA-----AAATAGG-GATGGTC------AGGT----AACCGGAAACAAAgc
gi|4 : aaaTCCAAAAATTGATGGAAGTAATGCACAT---------GTATCTAAAAAATTGATAGA----AAATCGGTCACTGAACACTTATCTCTGAACACTTTGCTGTAAATCTAGAATAT-TTGTT----AAATTACAAAA-TTGTATTATTTTAAAG-GGACATATCTCCATTTTATCACATTTTCACT-------TAAAGCAATT--TTTAAA----A--TTACT--------AA--GG---CCAA-A---TTA-ATATATCCGTTTCTTG-TTAGCCCGT---A-A---AA-AATA----TAG---TT-TATAC-CA-----------A----ATATGATTGTCTTTTCC---TTTTT-T-CA----CTCTCGAT----GTACTAGTAATGTTCAGAG-CAAGCCGATCATT----G-GGA-----TGTA-G----T---TGTA--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---CAGAT-------TCACTG-TACTGATCT-GAATAACAA--AATAA------------C-----------C----------A---TG------T--AT----TCAGGGC-AG-------TATT--TTC--------------TGTCTCTCTGTGCGGC-------------CATGTTTGATAT----CGTACAACACACACATTAGAATA---------TT--CAAA-A-TCCG-CA---TTTTG--TTAATTATAATG---CAATG-----C--TT---T---GTAACGGAAATGATTTAGA----TGAAA--A-AT-AA-ATAACA--GTAA--GAAA--GTAATG---TTTT-----------------------------------------------AA-AAA---TCAGGGTC-GACTGTA---AA-----GATAAAG-TACGGTC------AACC----AACCGGAAACTTAT--GT-G--T-TT-T---TT-----GC--CT---TATCAAATATGAAATT-AAACAagtt
gi|40 : attgtgtttgtgtttttgttttattcccCAA-A---AAA-ATATGTGCCTTACTTG-TTGGCCCCTGA-A-A---AA-A--A----TCG---AG-TAG
gi|41 : CAA-A---A---ATATGTTC-TTTCTGG-TTAACCCCTG--A-A---AA-A--A----TAG---GG-TAGgtaagt
gi|5 : aaTCCAAAAATTGATGGAAGAAATGCACATACAAATTGTGTATCTAAAAAATCGATAGA----AAATCGGCCACCGGCCACTTATCTTCCAACACTTCACTGTGAATCTAAAATAT-TAATCTAAAAAATTACg
gi|5 : cgttttgtgtttgtgtattttctcctTTCCAACAC---TTCACTGTGAATCTAAAATA-TTAATCTAAA----AAATTACT--------TA--GG---CCCA-A---ATC-ATATATCCGTTTCTGG-TTAGCCCGT---A-A---AA-A--A----AAG---TG-TATAC-CA-----------C----GTATAATTGTCTTTT-CTTTTTTTT-T-CA----CTGTCGAG----GTACTAGTAATGTTCAGAG-CA----------------------------A-G----T---TGTA--TGT----TG-------ACAAAGTTATATTACTAAAATAGGTATAT-TA---AAGAT-------TCACTG-TGCCGTTCT-GAATAA-AA-TAATAA------------C-----------C----------A---TT------T--GT----TCGGGGC-AG--------AAT--ATC--------------TGTCTCTCTGGGCGGC-------------CATGTTCGATAT----CGTGCAA-------ATTAGAATA---------TT--CAAA-A-TCAA-CG---TTTCG--T--------ATG---CATTG----TG--TG---T---GTAACGGGAATGTTTTAAA----TGAAA--A-AT-AA-ATAGCA--ATAA--GAAA--AAAATA---TTTTTG--ATT-----T-TTT----TTTT--T------AA-TTTGG---TAAC-GAA---T-ATGGTC-GGTAGTA---AA-----AATTAAG-GACGGTC------AACC----AACCAGAAACTTAT-----G--T-TT-T---TTT--TGGCTTTT---TATTAAATATGAAATT-AAATACCTTAGTATAAA-AAT--ACAAATCCAAAGAAATATCATTTTATttaggcccaaatcatatatccgtttctggttagcccgtaaaaaaaagtgtataccacgtataattgtcttttctttttttttcactgtcgaggtactagtaatgttcagagcaagttgtatgttgacaaagttatattactaaaataggtatattaaagattcactgtgccgttctgaataaaataataaccatttgttcggggcagaatatctgtctctctgggcggccatgttcgatatcgtgcaaattagaatattcaaaatcaacgtttcgtatgcattgtgtgtgtaacgggaatgttttaaatgaaaaataaatagcaataagaaaaaaatatttttgatttttttttttaatttggtaacgaatatggtcggtagtaaaaattaaggacggtcaaccaaccagaaacttatgttttttttggctttttattaaatatgaaattaaataccttagtataaaaatacaaatccaaagaaatatcattttatgattggtatacgacatt
gi|6 : cgttttgtgtttgtgtattttctccttccaaaaattgatggaagaaatgcacatacaaattgtgtatctaaaaaatcgatagaaaatcggccaccggccacttatcTCCAAAAACTGATGAAAGTTATGCACAT---------GTATCTCAAAAATTGATCGATAACAAATCAGCCACTGGCTACTT-TCTTTGAACTTTTTACTATAAATTTAAAATAT-ATGTT----TAATTACAAAA-TGTTATTATTTTAAAG-GGACACATTGCAATTTTATTACATTTTCACT-------AAAAGCAATT--TCTAAA----A--TTATT--------TA--TAATATTAA-ATCAATT-ATATATCCGTTTCTGG-TTAGCCCGT---G-A---AA-A--AAATATAA---TG-TAGAC-CA-----------C----GTATTATTGTTTTTT-T---TCTTT-G-TT----TTTCCGAT----GTAATAGTACTATTCAGAG-CAAGCCAATCATT----G-GT------TGTA-G----T---TGTA--TGG----TA-------ACCAAGTTATATTATTGAGATAGGTATAT-TA---ATTAT-------TTACTG-TGCTGTTCT-TAATAACAATTAGT-A------------C-----------C----------A---TT------T--GT----TCGGAAA-AG-------TATT--CTC--------------TGT-TCTCTAGGCGGC-------------CATATTTGATAT----CGTACAGTACACCCATTAGACTA---------TT--CAAA-A-TACA-CA---TTT-G--TTAGGTATGATG---CAGAC----TC--TT---T---GAAACGGAAATGTTGCAGG----TGAAA--G-AT-CA-A-AACG--A-------------AACA---C---------------T-TTT----TTTT--T------AA-TTTGG---GAAA-CAA---T-AGGGCC-GGCAGTA---AA-----AATTAAG-AACGGTC------AACT----AACCAGAAGCAAAT-----G--T-TT-T---CGT--TGGC--CT---TATCAAATATAAAATT-AAAgattggtatacgacatt
gi|7 : cccTGATGGAAGTAATGCACAT---------GTATCTCATA--TCGATAAA----AAA-AGGTCACTTACCACTTATCTTCGTACACTTCAATGTAAATCTTAGATAT-TAGTT----AAAGTACAAAA-TTTTATTATTTTAAAG-GGACACATCGCTATTTTAACCCATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------TA--GG---CCTA-A---ATA-ATATACCCGTTTCTGG-TTAGCCCGTA--A-A---AA-A--A----TAG---TG-TATAC-CA-----------C----GTATGATTG--TTTT-C---TTTTT-T-TT----CTCCCGAG----GTAGTAGTAATGTTCAGAA-TAAGCCGATCATT----G-GT------TGTA-G----T---TTTG--TGT----TA-------ATCAAGTTATATTATTGAAATAGGTACATCTAATTAAGAT-------TCACTG-TGCTGTTCT-GAATAACAA--AATAA------------C-----------C----------A---TT------T--GT----TCAGGGC-AG-------TGTT--CTA--------------TGTGTCTCTGGGCGGC-------------CGGGTTTGATAT--------------ACACATTAGAATA---------TT--CAAA-A-TCCA-CA---TTTTG--TTAGGTAAAATG---TAGTG----GC--TG---T---GTAACGGATATGGTTTGAA----T--AA--A-ATAAA-ATAAAA--ACAA--GAAA--ATAATG---TTTTTG--A-------T-TTTA---TTTT--T------AA-TTTGG---AAAA-AAA---T-ACAGTC-GGCAGTA---AA-----GATTAAG-GATGGTC------AACC----AACCGGAA--------------T-TT-T---TTT--Ta
gi|8 : ATCTCAAAAATCGATAGA----AATTCGATCACTGACCACTTATCTTCGAACACTTCTCTGTATATCTAAAATAT-AAGTT----AAATGA-AAAA-TTCTATTATTTTAAAG-GGACACATTGCGATTTTAATACATTTTCACT-------AAAAGCAATT--TCTAAA----A--TTAC---------------------------ACA-A-----CCATTTCTTG-ATAGCCAGT---A-A---AAGA--A----TAG---TG-TAGAC-CA-----------C----ATAT-----TCTTTT--------TT-T-CA----CTCTCGAG----GTGCTAGTAATGTTCAGAG-CAAGCCGATCATT----G-GT------TGTA-G----T---TGTAGTTGTATCTTA-------ACCAAGTTAGGTTATTGAGATAGGTACAT-TA---AAGAT-------TCACTG-TGCTGTTCT-GAATAACAA-AAACAA------------A-----------C----------A---CT------T--GT----TCAGGGC-AG-------TATT--CTC--------------TGTATCTCTGAGTGAC-------------CATGTTTGATAT----CATAAAGCACACACATTAGAATA---------C---CAAA-A-TCCA-CA---TTTTG--TTAAGTATAATG---CAGTG----TT--TA---T---GTAACAGAAATAATTTAGA----TGAAA--A-AA-AA-ATAAAA--ATAA--GAAA--GTAATG---TTTTTG--A-------T-TTT----TTTT--T------AA-TTTGG---GAAA-AAA---T-GGGGTC-GGCAGTT---AA-----GATTAAG-GACAGTC------AACC----AACCCAAAACTTAT--G--C--T-TT-T---TT-----GC--CT---TATCAAATATGAAATT-AAATAttt
gi|9 : TCCAAAAATTGATGGAAGTAATGCACAT---------ATATCTAAAAGATTGATAGA----AAATCGGTCACTGAACACTTATCTCTGAACACTTTGCTGTAAATCTAGGATAT-TTGTT----AAATTACAAAA-CTGTATTATTTTTAAG-GGACATATCGCCATTTTAACACATTTTCACT-------TAAAGCAATT--TCTAAA----A--TTACT--------AA--GG---CCAA-A---TTA-ATACATCCGTTTCTTG-TTAGCCCTT---A-A---AA-A--A----T-G---TT-CAGAG-CA-----------
gi|9 : tcccAATGTTCAGAG-CAAGCCGATCATT----G-GGA-----TG-A-G----G---TGTG--TGT----TA-------ACCAAGTTATATTATTGAGATAGGTACAT-TA---CAGAT-------TCACTG-TACTGATCT-GAATAACAA--AATAA------------C-----------C----------A---TG------T--AT----TCAGGGC-AG-------TATT--TTT--------------TGTCTCTCTGTGCGGC-------------CATGTTTTATAT----CGTACAGCACACACATTAGAATA---------TT--CAAA-A-TCCG-CA---TTTTG--TTAATTATACTT---CAATG-----C--TT---T---GTAACGGAAATGATTTAGA----TGAAA--A-AT-AA-ATAACA--ATAA--GAAA--GTAATG---TTTT----------------------------------------------GAA-AAA---TCAGGGTC-GCTTGTA---AA-----GATAAAG-TACAGTC------AACC----ATCCGGAAATTTAT--GT-G--T-TT-T---TT-----GC--TT---TATCAAATATGAAATT-AAATACagccgatcattgggatgaggtgtgtgttaaccaagttatattattgagataggtacattacagattcactgtactgatctgaataacaaaataaccatgtattcagggcagtattttttgtctctctgtgcggccatgttttatatcgtacagcacacacattagaatattcaaaatccgcattttgttaattatacttcaatgctttgtaacggaaatgatttagatgaaaaataaataacaataagaaagtaatgttttgaaaaatcagggtcgcttgtaaagataaagtacagtcaaccatccggaaatttatgtgttttttgctttatcaaatatgaaattaaatac
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|38 ): ATTAAGCACTATTGGAATTTCACATTCATTTTAAATTTCTTGCGGGACAACTCGTTTCCTAAGG
Unaligned ( gi|42 ): TGCGAGGGGGGTTGGCCTCAGAATAAATTAGGGCTGTCTAAAAAA
Unaligned ( gi|43 ): TATCATCATTTTAAATGTTTTAGCATTTTCACAGCTACATTAAAA