lowQualScore : 1 111 333333 11111 1 1 1111 1 2222 111111111 11 22222222222222 333333333333 11 11111111 111111 2222222222222222 11111111111 1 1 11111111 111111111 1111 11111111
lowQualScore : 6 3 66 222 4 333333 66 00000 4 4 99 2 4 4 777 4 66 8 1 4 6 5555 3 1 0 3 3333 333333333 55 00 6666 1 0 55 22222222222222 77 0 44 333333333333 33 00000000 111111 2 3 9999999999999999 77777 666 77777777777 55 3 3 1 8 4 3 33 99 1 6 55555555 777777777 8888 555 4 1 3 7 3 66666666 4 6
lowQualScore : . . .. ... . ...... .. ..... . . .. . . . ... . .. . . . . .... . . . . .... ......... .. .. .... . . .. .............. .. . .. ............ .. ........ ...... . . ................ ..... ... ........... .. . . . . . . .. .. . . ........ ......... .... ... . . . . . ........ . .
lowQualScore : 5 9 11 333 4 111111 11 00000 0 4 00 2 4 4 888 4 77 9 1 4 7 5555 6 0 5 6 4444 555555555 55 00 7777 4 4 00 77777777777777 33 7 22 666666666666 66 99999999 444444 9 4 8888888888888888 11111 444 33333333333 00 6 5 1 0 0 6 88 33 3 0 33333333 888888888 9999 444 0 1 2 0 7 11111111 4 0
consensus : TATGTGTCAGAACGTANCAGAACACACTGGATTGTT--T-T-GT-GGTAGTTTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATA---A-ATACATTGAC-AGACAAGACGTAAC-TAAACGAAACTAATAGCAATAAAAGCACATGTCACTAA----TCGATAAA-GGAGAAACGAA-CAATAA-TAAA--TAAAAC-TTACCGGCGCA--TCC--GCGTGT--ATCGAGTTCAA--TAGTGACAAGGC-ATGT--CTTGTCACTAA--G----TT--ACTC--TG---GC---TGAAC-----TGCG-CCGATAA-GCTTTA---------ATT-----C---CCC-----------C--CTTAT-GAAGGTGTTAGTGGCATGCACGATTAATCCCATGC-AA-CATATAGATACGCCCACAACATGAAT-TCNCACGCACTTN-TATACATAACTCTGTCTATAGACAG-GTTATG------TATATCTG---------ACACTCG----TGACTCTCATGCATAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------A-AATACAATCACCGTAGTGATACTTAGAGACCT
Reference ( gi|4 ) : TATGTGTCAGAATGTAGCAGAACACACTGGAATGTT--T-T-GT-GGTAGTTTTA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACACAGACT-A-CATA---A-ATACATTGAC-AGACAAGACGTAAC-TAAACGAAACAAATAGCAATAAAAGCACATGTCACTAA----TCGATAAA-GGAGAAACGAA-CAATCA-TAAA--TAAAAC-TTATCGGCGCA--TCC--GCGTGT--ATTGAGTTCAA--TGGTGACAAGGT-ATGT--CTTGTCACTAA--G----TT--ACTC--TG---GC---TGAAC-----TGCG-CCAATAATGTTTTA---------ATT-----C---CCC-----------C--CTTAT-GAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-CATATAGATACGCCCACAACATGAAT-TCACACGCACTTG-TATACATAACTCTGTCTATAAACAG-GTTATG------TTTATTTG---------ACACTCA----TGACTCTCATGCACAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGCAGTACA--------A-AATACAATCACCGTAGTGATACTTAGAAACCT
gi|2 : TATGTGTCAGAATGTACCAGAACACACTGTATTGTT--T-T-GT-GGTAGTTTAA-T--TGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATA---A-ATACATTGAC-AGACAAGACGTAAC-TAAACAAAACTAATAGCAATAAAAGCACATGTCACTAA----TCGATAAA-GGAGAA-CGAA-CAATAA-TAAA--TAAAAC-TTACCGGCGCA--TCC--ACGTGT--AATGAGTTCAT--TAGTGACAAGAC-ATGT--CTTGTCACTAA--G----TT--ACTC--TG---GC---TGAAC-----TGCG-CCAATAGTGCTTTA---------ATT-----C---CCC-----------C--CTTAT-AAAGATGTTAGTGGCATGCACGATTAATGTCATGC-AA-CATGTAGATACGCCCACAACATGAAT-TCACACGCACTTA-TATACATAACTCTGTCTATAAACAG-GTTATG------TATATTTG---------ACACTCA----TGACTCTCATGCATAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------A-AATACAATCACCATAGTGATACTTAGAGACCT
gi|7 : cccttTATGTGTCAGAATGTAGCAGAACACACTGGATTGGT--T-T-GT-GGTAGTTTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAATACATACAAAGACT-A-CATA---A-ATATATTGAC-AGACAAGACGTAAC-TAAACGAAACTAATAGCAATAAAAGCACATGTCACTAA----TCGATAAT-GGAGAAACGAA-CAATAA-TAAA--TGAAAC-TTACCGTCGCA--TCC--ACGTGT--ACTGAGTTCAA--TAGTGACAAGG----------------TAA--G----TT--ACTC--TG---GC---TGAAC-----TGCA-CCAATAATGCTTTA---------ATT-----C---CCT-----------C--CTTAT-GAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-CATATAGATATGCCCACAACATGAAA-TCACACGCACTTA-TATACATAACTCTGTC--------G-G--------------ATTTG---------ACACTCG----TGACTCTCATGTATAATTGCTTAAACACTTA-CTTTCCTAAAACAACACCGTACACAATAGGTAGCACA--------A-AATACAATCACCGTAGTGAAACTTAGAGACCTggatta
gi|8 : tTATGTGTCAGAATGTACCAAAACACACTGGATTGTT--T-G-GT-GGTAGTTTAA-T--TGGATTAC--A-----ATAT-T-AAA-GCCTGGACAGA-ATACAAATACT-A-CATA---A-ATACATTGAC-AGACAAGACGTAAC-TAAACGAAACTAATAGCAATAAAAGCACATGTCACTAA----TCGATAAA-GGAGAA-CGAA-CAAT-----AA--TAAA----TAT--------------G-GTAT--AT--------A--TA-----AAGGT-ATGT--CTTGTCACTAA--G----TT--ACTC--TG---GT---GGAAC-----TGCG-CCAATAATTCTGTA---------ATT-----C---CCC-----------C---TTAT-AAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-AATATAGATACGCCCACAACATGAAT-TCACACGCACTTA-TATACATAACGCTGTCTATAAACAG-GTTATG------TATATTTG---------ACACTCA----TGACTCTCATGCATAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------A-AATACAATCACCGTAGTGATACTTAGAGACCTggatt
gi|12 : ctcTATGTGTCAGAACGTACCAAAACACACTGGATTGTT--T-G-GT-GGTAGTTTAA-T--TGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAGGACT-A-CATA---A-ATACATTGAC-AGACAAGACGTAAC-TAAACGAAACTAATAGCAATAAAAGCACATGTCACTAA----TCGATCAA-GGAGAA-CGAA-CAATAA-TAAA--TAAAAC-TTACCGGCGCA--TCC--ACGTGT--AATGAGTTCAA--TAGTGACAAGGT-ATGT--CCTGTCACTAA--G----TT--ACTC--TG---GT---TGAAC-----TGCG-CCAATAATTCTGTA---------ATT-----C---TCC-----------A--CTTAT-AAAGGTGTTAGTGGCATGTACGATTAATCTCATGC-AA-CATATAGATACGCCCACAACATGAAT-TCggatt
gi|9 : cctcTATGTGTCAGAATGTACCAAAACACACTGGATTGTT--T-G-GT-GGTAGTTTAA-T--TGGATTAC--A-----ATAT-
gi|5 : ataattatatacaattcacggcatctataaaaattaatgatatcaatgttaaaattctgccgctaaatgttgttttcactggtttccccacggaacaggtgcgcgcagcacttgcgcatactgtatacacacgcaagttaaaagaaaaaaattacacaaattcttacacacggcatacacacgattattttcttgtctttttgacaaaaaaattacacttgtagatctaattgatccggcttacagctatatggatataaggtatctaacgtaggaattgtccacgtataggtaaaggttgctagctagcatttatttgggaattccatcgtcgtttatattccaacgtcgatggttttctaattgttatgcaaggaattgctggttttgaatccaaatacccagggtcgccatttgtcaccctcATGTGTAAGAACGTAAACGAACAAACTGGATTATT--TCT-GT-GGTAGTTTAA-TTATTGATTAC--A-----ATAT-T-CAACACCTGGAGAGACATACAAAGTTT-A-CATC---A-ATACA-----------AAACGTAAC-TAAACGAAACTAATAGCGATAAAAGCACATATCAATAA----TAGATAAA-GGAGAAACGAA-CAATAA-TAAAATTAAA---TTACTGGCGCA--TCA--GCGTGT--ATCGAGTTCAA--TAGTGACAAGGT-AAGT--CTTGTCACTAG--C----TT--ACTG--TG---AC---TGAAC-----TGCG-CC----------------------TT-----C---TCC-----------C--CTTAT-GAAGGTGTTAGTGGTATGCACGATAAATCCCATGC-AA-CATATAGATACGCCCACAACATGAAT-TTCCACGCACTTT-TATACATAACTCTGTCTATTAACAG-GTTATG------TATATCTG---------ACACTCATGACTGACTCTCATGCATAATTACTTATACACTTA-GAATCCTAAAACAACACCGTGCATAACAGGTAGCACA--------A-AATACAATCACCGTAGTGATACTTAGAGACTT
gi|6 : tccttgATGTGTAAGAACGTAAACGAACAAACTGGACTATT--T-TTGT-GGTAGTTTAACT-ATTTATTAC--A-----ATAT-TTAAC-ACCTGGAGAGACATACAAAGTTT-A-CATC---A-ATACA-----------AGACGTAAC-TAAACGAAACTAATAGCGATAAAAGCACATATCAATAA----TAGATAAA-GGAGAAACGAA-CAATAA-TAAAATTAAA---TTACTGGCGCA--TCA--GCGTGT--ATCGAGTTCAA--TAGTGACAAGGT-AGGT--CTTGTCACTAG--C----TT--ACTG--TG---AC---TGAAC-----TGCG-CC----------------------TT-----C---CCC-----------C--CTTAT-GAAGGTGTTAGTGGTATGCACGATAAATCACATGC-AA-CATATAGATACGCCCACAACATGAAT-TTCCACGCACTTT-TATACATAACTCTGTCTATTAACAG-GTTATG------TATATCTG---------ACACTCATGACTGACTCTCATGCATAATTACTTTTACACTTA-GAATCCTAAAACAACACCGTGCATAACAGGTAGCACA--------A-AATATAATCACCGTAGTGATACTTAGAGACCTtgattac
gi|10 : tccttgATGTGTAAGAACTTAGCAGAACAGACTGGATTGTT--T-TTGT-GGTAGCTTAA-TTATGGATTAC--A-----ATATCT-AAA-ACCTGGAAAGACATACAAAGATT-A-CATA---A-ATACATTGAC-AGACAAGACGTTAC-TAAACGAAACTAATAGCAATAAAAGCACATGTCACTAA----TCGATAtgattac
gi|11 : cttgATGTTCAT-T-ATTGGTGGTTT-A---ATGGACTATTAAGGTTTATAT-T-AA---TCTGAAAAGACATACAAAGACTAA-CATA---A-ATACAAAGGCTACACAGGGCATAAC-TAACCGAAAC-AATAGAAGGAATTGCACAAGTCAAAAA----TCGACAAA-GGAGACCTGAA-TAA-AA-TAAA--CTCAAC-TTATGAGCGCA--TCC--TTGTATACATCG---CCAA----GAGACAATGG-AAGT--CCTGTCACT-------------------TG---GA---CGAACTTGAATGCACCCGATAGAG----A---------ATTGTCCAC---CCCTCTCCACCCCAC--CCTAC-GAAGATGTTTGTAACGTGCATGATTAATTCCATGCAAA-CATATAGGAACGCCCACAGCATAAAT-TCTCACcttactctggttgaactgcgccaataatgctttaattcccccctgatgaatatgtcagtggcatgcacgattaattccatgcaacataaagatacacccacaacatgaattcacacgcacatttatacatacctctgtccataaacaggttatgtatatctgatgtatataacactcatgactctcatgcatcattacttaaacacttacattcctaaaacaacaccgtacacaacaggtagcgcaaaatacaatcacc
gi|3 : taaacctttggtgtgaaataaatgattcacgtc-----ATAT-T-AA---CCTAAAATAACATACACAGACT-AACATATATATATATATGGACTACACGGGGCATAACGCAACCGAAACAA-TAAAAGGAATTGTACAAGTCAACAA----TTGACTGA-GGAGAAATTAA-TAA--AGTAAA--AACAAT-TTACAGGCGCA--TCCTTGCTTAT--GTCG---CCAA--AAG--AAAATGG-AAGT--CCTGTTACTTG--G----ACGAACT---TG---GC---CCAAA-----TGCG-CCGATAGAGGATTA---------TTT-----C---CCC-----------T--C--AC-GAAA-----------ATACACAATTGATTCCATGC-AAACATACAGGCACGTCCATAACATAAAT-TTTCACTCACCAA-TATACACAACTCTGTCTATAAACAG-GGTATG------TATACCTA---------ATACTCG----GTACATTCATGCAC-TTTACGTAAGAATTTA-CATGCC--AAACTACACGATATACAACGAGTA--ACA--------AGGATACAATAACAGTAttaccatcataca
gi|2 : acccaatggtgtgttataaatgatacacactggattacgaattgatggtgtaatgaacaattaagttttATGACATTAATCGTGCATGCCACTAACATCTTTATAAG-GGGGGAAT-----------------TAAAGCACTATTGGCGCAGTTCA--GC---C--A--GAGT--AACTTAGTGACAAGAC-ATGT--CTTGTCACTAA--T----GA--ACTCA-TT---ACACGTGGA------TGCG-CCGGTAA-GTTTTATTTATTATTGTT-----CGTTCTC-----------C--TTTATCGA-----TTAGTGACATGtcatatactccaaggcagacctggatta
gi|12 : ccctttatgtgtcagaatgtaccagaacacactgtattgttttgtggtagtttaattggattacaatattaaaacctggaaagacatacaaagactacataaatacattgacagacaagacgtaactaaacaaaactaatagcaataaaagcaGTACATGCCACTAACACCTTTATAAGTGGAGAA---------TTA-CAGA------A--TTATTGGCGCAGTTCA--AC---C--A--GAGT--AACTTAGTGACAGGAC-ATAC--CTTGTCACTA--------TTGAACTCA-TT---ACACGTGGA------TGCG-CCGGTAA-GTTTTA---------TTT-----gcaacatgtagatacgcccacaacatgaattcacacgcacttatatacataactctgtctataaacaggttatgtatatttgacactcatgactctcatgcataattacttaaacacttacattcctaaaacaacaccgtacacaacaggtagcacaaaatacaatcaccatagtgatacttagagacctggatta
gi|13 : cctctatgtgtcagaacgtaccaaaacacactggattgtttggtggtagtttaattggattacaatattaaaacctggaaagacatacaaggactacataaatacattgacagacaagacgtaactaaacgaaactaatagcaataaaagcacatgtcactaatcgatcaaggagaacgaacaataatA-GAAGAAATAAATCAA--G-TGAA--ACAAAC-TTACCGGCCCA--TCC--TTGTAT--A--------AA--T--TGAAGAGGTCATGTTTCTTGG-ACAAA-------------TC--TG---AC---TCAAA-----TGCG-CCGATAAAGAGT-A---------ATT-----C---CTC-----------CATCCCAC-GAAGCTGTTAGTCACATGCACGATTTACTCCATGCAAA-TGTATAGGAACGCCCACAATAT-AAT-T---------TTT-CA---ATTACTCTGTCTATAAACAG-GTTATGCATACATGTACCTA---------ATACTCG----TGACATTCATGCACATCTACGTAAGAACTAA-CATACC--AAACTGCACCATATACGACG---AGTAAA--------A-AAGATAATgattaatctcatgcaacatatagatacgcccacaacatgaattc
gi|5 : ggaccg--TAGTGACAAGAC-TTAC--CTTGTCACTA--------TTGAACTCGATACACGC---TGA-------TGCG-CCAGTAA---TTTA---------ATT-----ataacagtatcaaaaacatcaaaacatacctagat
gi|6 : tccttgatgtgtaagaacgtaaacgaacaaactggattatttctgtggtagtttaattattgattacaatattcaacacctggagagacatacaaagtttacatcaatacaaaacgtaactaaacgaaactaatagcgataaaagcacatatcaataatagataaaggagaaacgaacaataataa--TAGTGACAAGAC-CTAC--CTTGTCACTA--------TTGAACTCGATACACGC---TGA-------TGCG-CCAGTAA---TTTA---------ATT-----gcttactgtgactgaactgcgccttctccccttatgaaggtgttagtggtatgcacgataaatcccatgcaacatatagatacgcccacaacatgaatttccacgcacttttatacataactctgtctattaacaggttatgtatatctgacactcatgactgactctcatgcataattacttatacacttagaatcctaaaacaacaccgtgcataacaggtagcacaaaatacaatcaccgtagtgatacttagagactttgattac
gi|10 : tccttgatgtgtaagaacgtaaacgaacaaactggactatttttgtggtagtttaactatttattacaatatttaacacctggagagacatacaaagtttacatcaatacaagacgtaactaaacgaaactaatagcgataaaagcacatatcaataatagataaaggagaaacgaacaataataaTGTCACTAATCGATACTT--ACTC--TG---GT---TGAAC-----TGCG-CCAATAATGCTTTA---------ATT-----C---CCC-----------C--CTGAT-GAATATGTCAGTGGCATGCACGATTAATTCCATGC-AA-CATAAAGATACACCCACAACATGAAT-TCACACGCACATT-TATACATACCTCTGTCCATAAACAG-GTTATG------TATATCTGATGTATATAACACTCA----TGACTCTCATGCATCATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCGCA--------A-AATACAATCACCgcttactgtgactgaactgcgccttccccccttatgaaggtgttagtggtatgcacgataaatcacatgcaacatatagatacgcccacaacatgaatttccacgcacttttatacataactctgtctattaacaggttatgtatatctgacactcatgactgactctcatgcataattacttttacacttagaatcctaaaacaacaccgtgcataacaggtagcacaaaatataatcaccgtagtgatacttagagaccttgattac
gi|10 : cttgatgtgtaagaacttagcagaacagactggattgtttttgtggtagcttaattatggattacaatatctaaaacctggaaagacatacaaagattacataaatacattgacagacaagacgttactaaacgaaactaatagcaataaaagcacaCATGAGTGTTATATACATCAGATATACATAAC-CTGTTTATGGACAGAGGTATG------TATA
gi|3 : cttgatgtgtaagaacttagcagaacagactggattgtttttgtggtagcttaattatggattacaatatctaaaacctggaaagacatacaaagattacataaatacattgacagacaagacgttactaaacgaaactaatagcaataaaagcacatgtcactaatcgatacttactctggttgaactgcgccaataatgctttaattcccccctgatgaatatgtcagtggcatgcacgattaattccatgcaacataaagatacacccacaacatgaattcacacgcacattG-TATACAT-ACCCTGTTTATAGACAGAGTTGTG------TATATTactctcatgcatcattacttaaacacttacattcctaaaacaacaccgtacacaacaggtagcgcaaaatacaatcacc
gi|2 : acccaatggtgtgttataaatgatacacactggattacgaattgatggtgtaatgaacaattaagttttatattaacctaaaataacatacacagactaacatatatatatatatggactacacggggcataacgcaaccgaaacaataaaaggaattgtacaagtcaacaattgactgaggagaaattaataaagtaaaaacaatttacaggcgcatccttgcttatgtcgccaaaagaaaatggaagtcctgttacttggacgaacttggcccaaatgcgccgatagaggattatttcccctcacgaaaatacacaattgattccatgcaaacatacaggcacgtccataacataaattttcactcacc-TATACATAAC-CTGTTTATAGACAGAGTTATG------TATATctaatactcggtacattcatgcactttacgtaagaatttacatgccaaactacacgatatacaacgagtaacaaggatacaataacagtatcatatactccaaggcagacctggatta
gi|8 : ccctttatgtgtcagaatgtaccagaacacactgtattgttttgtggtagtttaattggattacaatattaaaacctggaaagacatacaaagactacataaatacattgacagacaagacgtaactaaacaaaactaatagcaataaaagcacatgtcactaatcgataaaggagaacgaacaataataaataaaacttaccggcgcatccacgtgtaatgagttcattagtgacaagacatgtcttgtcactaagttactctggctgaactgcgccaatagtgctttaattccccccttataaagatgttagtggcatgcacgattaatgtcatgcaacatgtagatacgcccacaacatgaattcacacgcactt-TATACATAAC-CTGTTTATAGACAGCGTTATG------TATATtttgacactcatgactctcatgcataattacttaaacacttacattcctaaaacaacaccgtacacaacaggtagcacaaaatacaatcaccatagtgatacttagagacctggatta
gi|5 : ctctatgtgtcagaatgtaccaaaacacactggattgtttggtggtagtttaattggattacaatattaaagcctggacagaatacaaatactacataaatacattgacagacaagacgtaactaaacgaaactaatagcaataaaagcacatgtcactaatcgataaaggagaacgaacaataataaatatggtatatataaaggtatgtcttgtcactaagttactctggtggaactgcgccaataattctgtaattcccccttataaaggtgttagtggcatgcacgattaatctcatgcaaaatatagatacgcccacaacatgaattcacacgcactt-TATACATAAC-CTGTTAATAGACAGAGTTATG------TATAtttgacactcatgactctcatgcataattacttaaacacttacattcctaaaacaacaccgtacacaacaggtagcacaaaatacaatcaccgtagtgatacttagagacctggatt
gi|6 : tccttgatgtgtaagaacgtaaacgaacaaactggattatttctgtggtagtttaattattgattacaatattcaacacctggagagacatacaaagtttacatcaatacaaaacgtaactaaacgaaactaatagcgataaaagcacatatcaataatagataaaggagaaacgaacaataataaaattaaattactggcgcatcagcgtgtatcgagttcaatagtgacaaggtaagtcttgtcactagcttactgtgactgaactgcgccttctccccttatgaaggtgttagtggtatgcacgataaatcccatgcaacatatagatacgcccacaacatgaatttccacgcacttt-TATACATAAC-CTGTTAATAGACAGAGTTATG------TATAtctgacactcatgactgactctcatgcataattacttatacacttagaatcctaaaacaacaccgtgcataacaggtagcacaaaatacaatcaccgtagtgatacttagagactttgattac
gi|14 : tccttgatgtgtaagaacgtaaacgaacaaactggactatttttgtggtagtttaactatttattacaatatttaacacctggagagacatacaaagtttacatcaatacaagacgtaactaaacgaaactaatagcgataaaagcacatatcaataatagataaaggagaaacgaacaataataaaattaaattactggcgcatcagcgtgtatcgagttcaatagtgacaaggtaggtcttgtcactagcttactgtgactgaactgcgccttccccccttatgaaggtgttagtggtatgcacgataaatcacatgcaacatatagatacgcccacaacatgaatttccacgcactttAATAT-GTTATG------TTTATCTG---------ACACTTA----TGACATTCATGCATG--TA--TACACAA-TA-C------AAAACAACACCATTCACAACAAGtctgacactcatgactgactctcatgcataattacttttacacttagaatcctaaaacaacaccgtgcataacaggtagcacaaaatataatcaccgtagtgatacttagagaccttgattac
gi|15 : ATATTTATCTTTCTTAAAATAACACCGTACACAGCAGGTAATACGGAGAAAACA-AATACAATCACCGCAGTGATACCTAGAGACttataatggtaaaaattatagtaccatcaatgcaaattcggattacat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TAAATATTAACAAGTCACGGCATCTATAGAAAACAATCAAACAACAATAATAGTCTAATAAAATGCTGCCGTCAGATGTTATTTCTTCAATAGGTTTATTCCGGAAATGGTGCTCGTCACACATGCGCAAACTGAAAACACGAAATTTTTTAAATAGAATTTGCGTATCAAATATTCATAAAATAAACGCAGCATATACTTTGATGATTCGATAGAAAAAAATTAAATTTTATAGATAAGTTTCATCCGGCTCGACACAGAGCTGTCGATATAAATATTGATATTTAACGTGACTGGAATATGTCACGTATAAATTTCGAGTTGCAAGCTTGCGTAAAATTGATAATGCCATCGTCGATTATGTAAGAAAGCCGTTAGGAAACGTGTCTCACGACGATAGTCATCAATGTGTATGTTGAGGAATTGCCGGTTAAAACTTGATTCAACTACACAGGGACGACACTTGTAACCATTTTGGTATGTGATAGGTTATATACACTAGATCGCAATTAAAGGTGAATATTGGACCAGATATTTACATATAAACCTAAAATCACATACAGGACTAACGTA
Unaligned ( gi|16 ): TAACCATCTGGTGTGTAATAAACGCTATACGCTGGATTAAGTTTTGATGTTTGATGATTTAATGGACTATTAAAAGGTTTATATCATCGTGAAAAGACATACATAA
Unaligned ( gi|17 ): TAATTATACCAAACTACACCATATACAACGAGTAACAAAGATAATCTAACATTATCATATACTCCAATGCAGACCTGGATAA
Alignments
lowQualScore : 111 22 11111 111111 11 1111 1111111 3333333 11111111111 111111 111111111 11111 11111111
lowQualScore : 1 777 222 55 3 00 55 66666 3 4 77 4 4 44 4 111111 3 4 5 11 5 0 55 55 777777 22 3 0000 55 4444444 55 1 99999 3 7 7777777 99999 77777777777 55 1 7 3 1 2 7 111111 0 666666666 88888 4 0 3 0 2 44444444 5 66 66
lowQualScore : . ... ... .. . .. .. ..... . . .. . . .. . ...... . . . .. . . .. .. ...... .. . .... .. ....... .. . ..... . . ....... ..... ........... .. . . . . . . ...... . ......... ..... . . . . . ........ . .. ..
lowQualScore : 0 000 666 00 6 55 00 88888 6 0 22 0 0 44 0 555555 2 0 7 00 7 7 55 55 777777 55 6 1111 00 1111111 00 4 11111 6 8 8888888 11111 33333333333 00 2 3 6 0 4 0 555555 1 000000000 22222 0 9 6 2 1 55555555 0 99 99
consensus : TATGTGTCAGAACGTANCAGAACACACTGGATTGT---TT-T-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--GCGTGT--ATCGAGTTCAATAGTGACAAG-G-TANGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCGATA-ATGCTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTCNCACGCACTTNTATACATAACTCTGTCTATAAACAGGTTATG------TATATCTG---------ACACTCG----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCT
Reference ( family-4759 ) : TATGTGTCAGAACGTANCAGAACACACTGGATTGT---TT-T-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--GCGTGT--ATCGAGTTCAATAGTGACAAG-G-CATGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCGATA-A-GCTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTCNCACGCACTTNTATACATAACTCTGTCTATAGACAGGTTATG------TATATCTG---------ACACTCG----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCT
gi|10 : ATGTGTAAGAACTTAGCAGAACAGACTGGATTGT---TT-TTGTGGTAGC--TTAA-TTATGGATTAC--A-----ATATCT-AAA-ACCTGGAAAGACATACAAAGATT-A-CATAAATACATTGAC-AGACAAGACGTTACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATA
gi|10 : cttgAATAGCAATAAAAG-CA-----CATGTCACTAATCGATACTT--ACTCTGGTTGAAC-----TGCG-CCAATA-ATGCTTTAATT-----CCCC-----------C--CTGATGAATATGTCAGTGGCATGCACGATTAATTCCATGC-AA-CATAAAGATACACCCACAACATGAATTCACACGCACATTTATACATACCTCTGTCCATAAACAGGTTATG------TATATCTGATGTATATAACACTCA----TGACTCTCATGCA-TCATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCGCA--------AAATACAATCACCcttactctggttgaactgcgccaataatgctttaattcccccctgatgaatatgtcagtggcatgcacgattaattccatgcaacataaagatacacccacaacatgaattcacacgcacatttatacatacctctgtccataaacaggttatgtatatctgatgtatataacactcatgactctcatgcatcattacttaaacacttacattcctaaaacaacaccgtacacaacaggtagcgcaaaatacaatcacc
gi|11 : cttgatgtgtaagaacttagcagaacagactggattgtttttgtggtagcttaattatggattacaatatctaaaacctggaaagacatacaaagattacataaatacattgacagacaagacgttactaaacgaaactTGGTGGT--TTAA-T---GGACTATTAAGGTTTATAT-T-AA---TCTGAAAAGACATACAAAGACTAA-CATAAATACAAAGGCTACACAGGGCATAACTAACCGAAAC-AATAGAAGGAATTG------CACAAGTCAAAAATCGACAAAGGAGACCTGAA-TAA-AATAAA--CTCAACTTATGAGCGCATCC--TTGTATACATCG---CCAAGA--GACAAT-G-GAAGT--CCTGTCACT-----------------TGGACGAACTTGAATGCACCCGATAGA-G----AATTGTCCACCCCTCTCCACCCCAC--CCTACGAAGATGTTTGTAACGTGCATGATTAATTCCATGCAAA-CATATAGGAACGCCCACAGCATAAATTCTCACTTACCATCATACA
gi|12 : taaacctttggtgtgaaataaatgattcacgtcatgttcattatTATGTGTCAGAACGTACCAAAACACACTGGATTGT---TT-G-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAGGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATCAAGGAG-AACGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--ACGTGT--AATGAGTTCAATAGTGACAAG-G-TATGT--CCTGTCACTAA--G----TT--ACTCTGGTTGAAC-----TGCG-CCAATA-ATTCTGTAATT-----CTCC-----------A--CTTATAAAGGTGTTAGTGGCATGTACGATTAATCTCATGC-AA-CATATAGATACGCCCACAACATGAATTC
gi|13 : cctcAGAAGAAATAAATCAA--GTGAA--ACAAACTTACCGGCCCATCC--TTGTAT--A--------AAT--TGAAGAG-GTCATGTTTCTTGG-ACAAA-------------TCTGACTCAAA-----TGCG-CCGATA-A-AGAGTAATT-----CCTC-----------CATCCCACGAAGCTGTTAGTCACATGCACGATTTACTCCATGCAAA-TGTATAGGAACGCCCACAATATAATTTTTCA-------------ATTACTCTGTCTATAAACAGGTTATGCATACATGTACCTA---------ATACTCG----TGACATTCATGCA-CATCTACGTAAGAACTAA-CATACC--AAACTGCACCATATACGACGAGTAA---A--------AAAGATAAT
gi|14 : ggaccgGTTATG------TTTATCTG---------ACACTTA----TGACATTCATGCA-TG--TA--TACACAA-TA-C------AAAACAACACCATTCACAACAAGTataacagtatcaaaaacatcaaaacatacctagat
gi|15 : aatatATATTTATCTTTCTTAAAATAACACCGTACACAGCAGGTAATACGGAGAAAACAAATACAATCACCGCAGTG-ATACCT--AG--AGACtataatggtaaaaattatagtaccatcaatgcaaattcggattacat
gi|2 : ttcatgtaaatTATGTGTCAGAATGTACCAGAACACACTGTATTGT---TT-T-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACAAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAA-CGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--ACGTGT--AATGAGTTCATTAGTGACAAG-A-CATGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCAATA-GTGCTTTAATT-----CCCC-----------C--CTTATAAAGATGTTAGTGGCATGCACGATTAATGTCATGC-AA-CATGTAGATACGCCCACAACATGAATTCACACGCACTTATATACATAACTCTGTCTATAAACAGGTTATG------TATATTTG---------ACACTCA----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCATAGTG-ATACTT--AG--AGACCTaatgatacatgtac
gi|3 : cccttACACACTGGATTACGAATT-G-ATGGT-GTAATGAA-C-A---ATTAA--GTTTT-ATAT-T-AA---CCTAAAATAACATACACAGACT-AACATATATATATATAT-GGACTACACGGGGCATAACGCAACCGA-AACAATAAAAGGAATTGTACAAGTCAACAATTGACTGAGGAGAAATTAA-TAA-AGTAAA--AACAATTTACAGGCGCATCCTTGCTTAT--GTCG---CCAAAAG--AAAAT-G-GAAGT--CCTGTTACTTG--G----ACGAACT-TGGCCCAAA-----TGCG-CCGATAGA-GGATTATTT-----CCCC-----------T--C--ACGAAA-----------ATACACAATTGATTCCATGC-AAACATACAGGCACGTCCATAACATAAATTTTCACTCACCAATATACACAACTCTGTCTATAAACAGGGTATG------TATACCTA---------ATACTCG----GTACATTCATGCACT--TTACGTAAGAATTTA-CATGCC--AAACTACACGATATACAACGAGTAACA-A--------GGATACAATAACAGTATCATATACTCCAAGGCAGACCTggatta
gi|4 : acccaatggtgtgttataaatgatTATGTGTCAGAATGTAGCAGAACACACTGGAATGT---TT-T-GTGGTAGT--TTTA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACACAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACAAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATCATAAA--TAAAACTTATCGGCGCATCC--GCGTGT--ATTGAGTTCAATGGTGACAAG-G-TATGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCAATA-ATGTTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-CATATAGATACGCCCACAACATGAATTCACACGCACTTGTATACATAACTCTGTCTATAAACAGGTTATG------TTTATTTG---------ACACTCA----TGACTCTCATGCA-CAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGCAGTACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AAACCTggatta
gi|5 : ATGTGTAAGAACGTAAACGAACAAACTGGATTAT---TTCT-GTGGTAGT--TTAA-TTATTGATTAC--A-----ATAT-T-CAACACCTGGAGAGACATACAAAGTTT-A-CATCAATACA-----------AAACGTAACTAAACGAAACTAATAGCGATAAAAG------CACATATCAATAATAGATAAAGGAGAAACGAA-CAATAATAAAATTAAA--TTACTGGCGCATCA--GCGTGT--ATCGAGTTCAATAGTGACAAG-G-TAAGT--CTTGTCACTAG--C----TT--ACTGTGACTGAAC-----TGCG-CC--------------TT-----CTCC-----------C--CTTATGAAGGTGTTAGTGGTATGCACGATAAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTTCCACGCACTTTTATACATAACTCTGTCTATTAACAGGTTATG------TATATCTG---------ACACTCATGACTGACTCTCATGCA-TAATTACTTATACACTTA-GAATCCTAAAACAACACCGTGCATAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACTT
gi|6 : tccttgATGTGTAAGAACGTAAACGAACAAACTGGACTAT---TT-TTGTGGTAGT--TTAACT-ATTTATTAC--A-----ATAT-TTAAC-ACCTGGAGAGACATACAAAGTTT-A-CATCAATACA-----------AGACGTAACTAAACGAAACTAATAGCGATAAAAG------CACATATCAATAATAGATAAAGGAGAAACGAA-CAATAATAAAATTAAA--TTACTGGCGCATCA--GCGTGT--ATCGAGTTCAATAGTGACAAG-G-TAGGT--CTTGTCACTAG--C----TT--ACTGTGACTGAAC-----TGCG-CC--------------TT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGTATGCACGATAAATCACATGC-AA-CATATAGATACGCCCACAACATGAATTTCCACGCACTTTTATACATAACTCTGTCTATTAACAGGTTATG------TATATCTG---------ACACTCATGACTGACTCTCATGCA-TAATTACTTTTACACTTA-GAATCCTAAAACAACACCGTGCATAACAGGTAGCACA--------AAATATAATCACCGTAGTG-ATACTT--AG--AGACCTtgattac
gi|7 : tccttgTATGTGTCAGAATGTAGCAGAACACACTGGATTGG---TT-T-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAATACATACAAAGACT-A-CATAAATATATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAATGGAGAAACGAA-CAATAATAAA--TGAAACTTACCGTCGCATCC--ACGTGT--ACTGAGTTCAATAGTGACAAG-G----------------TAA--G----TT--ACTCTGGCTGAAC-----TGCA-CCAATA-ATGCTTTAATT-----CCCT-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-CATATAGATATGCCCACAACATGAAATCACACGCACTTATATACATAACTCTGTC--------GG--------------ATTTG---------ACACTCG----TGACTCTCATGTA-TAATTGCTTAAACACTTA-CTTTCCTAAAACAACACCGTACACAATAGGTAGCACA--------AAATACAATCACCGTAGTG-AAACTT--AG--AGACCTtgattac
gi|8 : tTATGTGTCAGAATGTACCAAAACACACTGGATTGT---TT-G-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-GCCTGGACAGA-ATACAAATACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAA-CGAA-CAATAA------TAAA-----------TAT----G-GTAT--AT--------ATA-----AAG-G-TATGT--CTTGTCACTAA--G----TT--ACTCTGGTGGAAC-----TGCG-CCAATA-ATTCTGTAATT------CCC-----------C--CTTATAAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-AATATAGATACGCCCACAACATGAATTCACACGCACTTATATACATAACGCTGTCTATAAACAGGTTATG------TATATTTG---------ACACTCA----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCTggatt
gi|9 : ctcTATGTGTCAGAATGTACCAAAACACACTGGATTGT---TT-G-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-ggatt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TAAATATTAACAAGTCACGGCATCTATAGAAAACAATCAAACAACAATAATAGTCTAATAAAATGCTGCCGTCAGATGTTATTTCTTCAATAGGTTTATTCCGGAAATGGTGCTCGTCACACATGCGCAAACTGAAAACACGAAATTTTTTAAATAGAATTTGCGTATCAAATATTCATAAAATAAACGCAGCATATACTTTGATGATTCGATAGAAAAAAATTAAATTTTATAGATAAGTTTCATCCGGCTCGACACAGAGCTGTCGATATAAATATTGATATTTAACGTGACTGGAATATGTCACGTATAAATTTCGAGTTGCAAGCTTGCGTAAAATTGATAATGCCATCGTCGATTATGTAAGAAAGCCGTTAGGAAACGTGTCTCACGACGATAGTCATCAATGTGTATGTTGAGGAATTGCCGGTTAAAACTTGATTCAACTACACAGGGACGACACTTGTAACCATTTTGGTATGTGATAGGTTATATACACTAGATCGCAATTAAAGGTGAATATTGGACCAGATATTTACATATAAACCTAAAATCACATACAGGACTAACGTA
Unaligned ( gi|16 ): TAACCATCTGGTGTGTAATAAACGCTATACGCTGGATTAAGTTTTGATGTTTGATGATTTAATGGACTATTAAAAGGTTTATATCATCGTGAAAAGACATACATAA
Unaligned ( gi|17 ): TAATTATACCAAACTACACCATATACAACGAGTAACAAAGATAATCTAACATTATCATATACTCCAATGCAGACCTGGATAA
Alignments
lowQualScore : 111 22 11111 111111 11 1111111 111111 11111111111 111111 111111111 11111 11111111
lowQualScore : 1 777 222 55 3 00 55 66666 3 4 77 4 4 44 4 111111 8 4 5 11 5 0 55 55 777777 33 66 2 55 4444444 55 1 99999 3 7 222222 99999 77777777777 55 1 7 3 1 2 111111 0 666666666 88888 4 0 3 0 2 44444444 5 66 66
lowQualScore : . ... ... .. . .. .. ..... . . .. . . .. . ...... . . . .. . . .. .. ...... .. .. . .. ....... .. . ..... . . ...... ..... ........... .. . . . . . ...... . ......... ..... . . . . . ........ . .. ..
lowQualScore : 0 000 666 00 6 55 00 88888 6 0 22 0 0 44 0 555555 1 0 7 00 7 7 55 55 777777 22 22 4 55 1111111 00 4 11111 6 8 666666 11111 33333333333 00 2 3 6 0 4 555555 1 000000000 22222 0 9 6 2 1 55555555 0 99 99
consensus : TATGTGTCAGAACGTANCAGAACACACTGGATTGT---TT-T-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-ANGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCGATAATGCTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTCNCACGCACTTNTATACATAACTCTGTCTATAAACAGGTTATG------TATATCTG---------ACACTCG----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCT
Reference ( family-4759 ) : TATGTGTCAGAACGTANCAGAACACACTGGATTGT---TT-T-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-ANGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCGATAATGCTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTCNCACGCACTTNTATACATAACTCTGTCTATAAACAGGTTATG------TATATCTG---------ACACTCG----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCT
gi|10 : ATGTGTAAGAACTTAGCAGAACAGACTGGATTGT---TT-TTGTGGTAGC--TTAA-TTATGGATTAC--A-----ATATCT-AAA-ACCTGGAAAGACATACAAAGATT-A-CATAAATACATTGAC-AGACAAGACGTTACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATA
gi|10 : cttgTGTCACTAATCGATACTT--ACTCTGGTTGAAC-----TGCG-CCAATAATGCTTTAATT-----CCCC-----------C--CTGATGAATATGTCAGTGGCATGCACGATTAATTCCATGC-AA-CATAAAGATACACCCACAACATGAATTCACACGCACATTTATACATACCTCTGTCCATAAACAGGTTATG------TATATCTGATGTATATAACACTCA----TGACTCTCATGCA-TCATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCGCA--------AAATACAATCACCcttactctggttgaactgcgccaataatgctttaattcccccctgatgaatatgtcagtggcatgcacgattaattccatgcaacataaagatacacccacaacatgaattcacacgcacatttatacatacctctgtccataaacaggttatgtatatctgatgtatataacactcatgactctcatgcatcattacttaaacacttacattcctaaaacaacaccgtacacaacaggtagcgcaaaatacaatcacc
gi|11 : cttgatgtgtaagaacttagcagaacagactggattgtttttgtggtagcttaattatggattacaatatctaaaacctggaaagacatacaaagattacataaatacattgacagacaagacgttactaaacgaaactaatagcaataaaagcacaTGGTGGT--TTAA-T---GGACTATTAAGGTTTATAT-T-AA---TCTGAAAAGACATACAAAGACTAA-CATAAATACAAAGGCTACACAGGGCATAACTAACCGAAAC-AATAGAAGGAATTG------CACAAGTCAAAAATCGACAAAGGAGACCTGAA-TAA-AATAAA--CTCAACTTATGAGCGCATCC--TTGTATACATCG---CCAAGA--GACAATGG-AAGT--CCTGTCACT-----------------TGGACGAACTTGAATGCACCCGATAGAG----AATTGTCCACCCCTCTCCACCCCAC--CCTACGAAGATGTTTGTAACGTGCATGATTAATTCCATGCAAA-CATATAGGAACGCCCACAGCATAAATTCTCACTTACCATCATACA
gi|12 : taaacctttggtgtgaaataaatgattcacgtcatgttcattatTATGTGTCAGAACGTACCAAAACACACTGGATTGT---TT-G-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAGGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATCAAGGAGAA-CGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--ACGTGT--AATGAGTTCAATAGTGACAAGGT-ATGT--CCTGTCACTAA--G----TT--ACTCTGGTTGAAC-----TGCG-CCAATAATTCTGTAATT-----CTCC-----------A--CTTATAAAGGTGTTAGTGGCATGTACGATTAATCTCATGC-AA-CATATAGATACGCCCACAACATGAATTC
gi|13 : cctcAGAAGAAATAAATCAA--GTGAA--ACAAACTTACCGGCCCATCC--TTGTAT--A--------AAT--TGAAGAGGTCATGTTTCTTGG-ACAAA-------------TCTGACTCAAA-----TGCG-CCGATAAAGAGT-AATT-----CCTC-----------CATCCCACGAAGCTGTTAGTCACATGCACGATTTACTCCATGCAAA-TGTATAGGAACGCCCACAATATAATTTTTCA-------------ATTACTCTGTCTATAAACAGGTTATGCATACATGTACCTA---------ATACTCG----TGACATTCATGCA-CATCTACGTAAGAACTAA-CATACC--AAACTGCACCATATACGACGAGTAA---A--------AAAGATAAT
gi|14 : ggaccgAATATGTTATG------TTTATCTG---------ACACTTA----TGACATTCATGCA-TG--TA--TACACAA-TA-C------AAAACAACACCATTCACAACAAGTataacagtatcaaaaacatcaaaacatacctagat
gi|15 : ATATTTATCTTTCTTAAAATAACACCGTACACAGCAGGTAATACGGAGAAAACAAATACAATCACCGCAGTG-ATACCT--AG--AGACtataatggtaaaaattatagtaccatcaatgcaaattcggattacat
gi|2 : ttcatgtaaatTATGTGTCAGAATGTACCAGAACACACTGTATTGT---TT-T-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACAAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAA-CGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--ACGTGT--AATGAGTTCATTAGTGACAAGAC-ATGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCAATAGTGCTTTAATT-----CCCC-----------C--CTTATAAAGATGTTAGTGGCATGCACGATTAATGTCATGC-AA-CATGTAGATACGCCCACAACATGAATTCACACGCACTTATATACATAACTCTGTCTATAAACAGGTTATG------TATATTTG---------ACACTCA----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCATAGTG-ATACTT--AG--AGACCTaatgatacatgtac
gi|3 : cccttACACACTGGATTACGAATT-G-ATGGT-GTAATGAA-C-A---ATTAA--GTTTT-ATAT-T-AA---CCTAAAATAACATACACAGACT-AACATATATATATATAT-GGACTACACGGGGCATAACGCAACCGA-AACAATAAAAGGAATTGTACAAGTCAACAATTGACTGAGGAGAAATTAA-TAA-AGTAAA--AACAATTTACAGGCGCATCCTTGCTTAT--GTCG---CCAAAAG--AAAATGG-AAGT--CCTGTTACTTG--G----ACGAACT-TGGCCCAAA-----TGCG-CCGATAGAGGATTATTT-----CCCC-----------T--C--ACGAAA-----------ATACACAATTGATTCCATGC-AAACATACAGGCACGTCCATAACATAAATTTTCACTCACCAATATACACAACTCTGTCTATAAACAGGGTATG------TATACCTA---------ATACTCG----GTACATTCATGCACT--TTACGTAAGAATTTA-CATGCC--AAACTACACGATATACAACGAGTAACA-A--------GGATACAATAACAGTATCATATACTCCAAGGCAGACCTggatta
gi|4 : acccaatggtgtgttataaatgatTATGTGTCAGAATGTAGCAGAACACACTGGAATGT---TT-T-GTGGTAGT--TTTA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACACAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACAAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATCATAAA--TAAAACTTATCGGCGCATCC--GCGTGT--ATTGAGTTCAATGGTGACAAGGT-ATGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCAATAATGTTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-CATATAGATACGCCCACAACATGAATTCACACGCACTTGTATACATAACTCTGTCTATAAACAGGTTATG------TTTATTTG---------ACACTCA----TGACTCTCATGCA-CAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGCAGTACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AAACCTggatta
gi|5 : ATGTGTAAGAACGTAAACGAACAAACTGGATTAT---TTCT-GTGGTAGT--TTAA-TTATTGATTAC--A-----ATAT-T-CAACACCTGGAGAGACATACAAAGTTT-A-CATCAATACA-----------AAACGTAACTAAACGAAACTAATAGCGATAAAAG------CACATATCAATAATAGATAAAGGAGAAACGAA-CAATAATAAAATTAAA--TTACTGGCGCATCA--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-AAGT--CTTGTCACTAG--C----TT--ACTGTGACTGAAC-----TGCG-CC-------------TT-----CTCC-----------C--CTTATGAAGGTGTTAGTGGTATGCACGATAAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTTCCACGCACTTTTATACATAACTCTGTCTATTAACAGGTTATG------TATATCTG---------ACACTCATGACTGACTCTCATGCA-TAATTACTTATACACTTA-GAATCCTAAAACAACACCGTGCATAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACTT
gi|6 : tccttgATGTGTAAGAACGTAAACGAACAAACTGGACTAT---TT-TTGTGGTAGT--TTAACT-ATTTATTAC--A-----ATAT-TTAAC-ACCTGGAGAGACATACAAAGTTT-A-CATCAATACA-----------AGACGTAACTAAACGAAACTAATAGCGATAAAAG------CACATATCAATAATAGATAAAGGAGAAACGAA-CAATAATAAAATTAAA--TTACTGGCGCATCA--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-AGGT--CTTGTCACTAG--C----TT--ACTGTGACTGAAC-----TGCG-CC-------------TT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGTATGCACGATAAATCACATGC-AA-CATATAGATACGCCCACAACATGAATTTCCACGCACTTTTATACATAACTCTGTCTATTAACAGGTTATG------TATATCTG---------ACACTCATGACTGACTCTCATGCA-TAATTACTTTTACACTTA-GAATCCTAAAACAACACCGTGCATAACAGGTAGCACA--------AAATATAATCACCGTAGTG-ATACTT--AG--AGACCTtgattac
gi|7 : tccttgTATGTGTCAGAATGTAGCAGAACACACTGGATTGG---TT-T-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAATACATACAAAGACT-A-CATAAATATATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAATGGAGAAACGAA-CAATAATAAA--TGAAACTTACCGTCGCATCC--ACGTGT--ACTGAGTTCAATAGTGACAAGG----------------TAA--G----TT--ACTCTGGCTGAAC-----TGCA-CCAATAATGCTTTAATT-----CCCT-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-CATATAGATATGCCCACAACATGAAATCACACGCACTTATATACATAACTCTGTC--------GG--------------ATTTG---------ACACTCG----TGACTCTCATGTA-TAATTGCTTAAACACTTA-CTTTCCTAAAACAACACCGTACACAATAGGTAGCACA--------AAATACAATCACCGTAGTG-AAACTT--AG--AGACCTtgattac
gi|8 : tTATGTGTCAGAATGTACCAAAACACACTGGATTGT---TT-G-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-GCCTGGACAGA-ATACAAATACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAA-CGAA-CAATAA------TAAA-----------TAT----G-GTAT--AT--------ATA-----AAGGT-ATGT--CTTGTCACTAA--G----TT--ACTCTGGTGGAAC-----TGCG-CCAATAATTCTGTAATT-----CCCC-----------C---TTATAAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-AATATAGATACGCCCACAACATGAATTCACACGCACTTATATACATAACGCTGTCTATAAACAGGTTATG------TATATTTG---------ACACTCA----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCTggatt
gi|9 : ctcTATGTGTCAGAATGTACCAAAACACACTGGATTGT---TT-G-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-ggatt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TAAATATTAACAAGTCACGGCATCTATAGAAAACAATCAAACAACAATAATAGTCTAATAAAATGCTGCCGTCAGATGTTATTTCTTCAATAGGTTTATTCCGGAAATGGTGCTCGTCACACATGCGCAAACTGAAAACACGAAATTTTTTAAATAGAATTTGCGTATCAAATATTCATAAAATAAACGCAGCATATACTTTGATGATTCGATAGAAAAAAATTAAATTTTATAGATAAGTTTCATCCGGCTCGACACAGAGCTGTCGATATAAATATTGATATTTAACGTGACTGGAATATGTCACGTATAAATTTCGAGTTGCAAGCTTGCGTAAAATTGATAATGCCATCGTCGATTATGTAAGAAAGCCGTTAGGAAACGTGTCTCACGACGATAGTCATCAATGTGTATGTTGAGGAATTGCCGGTTAAAACTTGATTCAACTACACAGGGACGACACTTGTAACCATTTTGGTATGTGATAGGTTATATACACTAGATCGCAATTAAAGGTGAATATTGGACCAGATATTTACATATAAACCTAAAATCACATACAGGACTAACGTA
Unaligned ( gi|16 ): TAACCATCTGGTGTGTAATAAACGCTATACGCTGGATTAAGTTTTGATGTTTGATGATTTAATGGACTATTAAAAGGTTTATATCATCGTGAAAAGACATACATAA
Unaligned ( gi|17 ): TAATTATACCAAACTACACCATATACAACGAGTAACAAAGATAATCTAACATTATCATATACTCCAATGCAGACCTGGATAA
Alignments
lowQualScore : 111 22 11111 111111 11 1111111 111111 11111111111 111111 111111111 11111 11111111
lowQualScore : 1 777 222 55 3 00 55 66666 3 4 77 4 4 44 4 111111 8 4 5 11 5 0 55 55 777777 33 66 2 55 4444444 55 1 99999 3 7 222222 99999 77777777777 55 1 7 3 1 2 111111 0 666666666 88888 4 0 3 0 2 44444444 5 66 66
lowQualScore : . ... ... .. . .. .. ..... . . .. . . .. . ...... . . . .. . . .. .. ...... .. .. . .. ....... .. . ..... . . ...... ..... ........... .. . . . . . ...... . ......... ..... . . . . . ........ . .. ..
lowQualScore : 0 000 666 00 6 55 00 88888 6 0 22 0 0 44 0 555555 1 0 7 00 7 7 55 55 777777 22 22 4 55 1111111 00 4 11111 6 8 666666 11111 33333333333 00 2 3 6 0 4 555555 1 000000000 22222 0 9 6 2 1 55555555 0 99 99
consensus : TATGTGTCAGAACGTANCAGAACACACTGGATTGT---TT-T-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-ANGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCGATAATGCTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTCNCACGCACTTNTATACATAACTCTGTCTATAAACAGGTTATG------TATATCTG---------ACACTCG----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCT
Reference ( family-4759 ) : TATGTGTCAGAACGTANCAGAACACACTGGATTGT---TT-T-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-ANGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCGATAATGCTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTCNCACGCACTTNTATACATAACTCTGTCTATAAACAGGTTATG------TATATCTG---------ACACTCG----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCT
gi|10 : ATGTGTAAGAACTTAGCAGAACAGACTGGATTGT---TT-TTGTGGTAGC--TTAA-TTATGGATTAC--A-----ATATCT-AAA-ACCTGGAAAGACATACAAAGATT-A-CATAAATACATTGAC-AGACAAGACGTTACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATA
gi|10 : cttgTGTCACTAATCGATACTT--ACTCTGGTTGAAC-----TGCG-CCAATAATGCTTTAATT-----CCCC-----------C--CTGATGAATATGTCAGTGGCATGCACGATTAATTCCATGC-AA-CATAAAGATACACCCACAACATGAATTCACACGCACATTTATACATACCTCTGTCCATAAACAGGTTATG------TATATCTGATGTATATAACACTCA----TGACTCTCATGCA-TCATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCGCA--------AAATACAATCACCcttactctggttgaactgcgccaataatgctttaattcccccctgatgaatatgtcagtggcatgcacgattaattccatgcaacataaagatacacccacaacatgaattcacacgcacatttatacatacctctgtccataaacaggttatgtatatctgatgtatataacactcatgactctcatgcatcattacttaaacacttacattcctaaaacaacaccgtacacaacaggtagcgcaaaatacaatcacc
gi|11 : cttgatgtgtaagaacttagcagaacagactggattgtttttgtggtagcttaattatggattacaatatctaaaacctggaaagacatacaaagattacataaatacattgacagacaagacgttactaaacgaaactaatagcaataaaagcacaTGGTGGT--TTAA-T---GGACTATTAAGGTTTATAT-T-AA---TCTGAAAAGACATACAAAGACTAA-CATAAATACAAAGGCTACACAGGGCATAACTAACCGAAAC-AATAGAAGGAATTG------CACAAGTCAAAAATCGACAAAGGAGACCTGAA-TAA-AATAAA--CTCAACTTATGAGCGCATCC--TTGTATACATCG---CCAAGA--GACAATGG-AAGT--CCTGTCACT-----------------TGGACGAACTTGAATGCACCCGATAGAG----AATTGTCCACCCCTCTCCACCCCAC--CCTACGAAGATGTTTGTAACGTGCATGATTAATTCCATGCAAA-CATATAGGAACGCCCACAGCATAAATTCTCACTTACCATCATACA
gi|12 : taaacctttggtgtgaaataaatgattcacgtcatgttcattatTATGTGTCAGAACGTACCAAAACACACTGGATTGT---TT-G-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAGGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATCAAGGAGAA-CGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--ACGTGT--AATGAGTTCAATAGTGACAAGGT-ATGT--CCTGTCACTAA--G----TT--ACTCTGGTTGAAC-----TGCG-CCAATAATTCTGTAATT-----CTCC-----------A--CTTATAAAGGTGTTAGTGGCATGTACGATTAATCTCATGC-AA-CATATAGATACGCCCACAACATGAATTC
gi|13 : cctcAGAAGAAATAAATCAA--GTGAA--ACAAACTTACCGGCCCATCC--TTGTAT--A--------AAT--TGAAGAGGTCATGTTTCTTGG-ACAAA-------------TCTGACTCAAA-----TGCG-CCGATAAAGAGT-AATT-----CCTC-----------CATCCCACGAAGCTGTTAGTCACATGCACGATTTACTCCATGCAAA-TGTATAGGAACGCCCACAATATAATTTTTCA-------------ATTACTCTGTCTATAAACAGGTTATGCATACATGTACCTA---------ATACTCG----TGACATTCATGCA-CATCTACGTAAGAACTAA-CATACC--AAACTGCACCATATACGACGAGTAA---A--------AAAGATAAT
gi|14 : ggaccgAATATGTTATG------TTTATCTG---------ACACTTA----TGACATTCATGCA-TG--TA--TACACAA-TA-C------AAAACAACACCATTCACAACAAGTataacagtatcaaaaacatcaaaacatacctagat
gi|15 : ATATTTATCTTTCTTAAAATAACACCGTACACAGCAGGTAATACGGAGAAAACAAATACAATCACCGCAGTG-ATACCT--AG--AGACtataatggtaaaaattatagtaccatcaatgcaaattcggattacat
gi|2 : ttcatgtaaatTATGTGTCAGAATGTACCAGAACACACTGTATTGT---TT-T-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACAAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAA-CGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--ACGTGT--AATGAGTTCATTAGTGACAAGAC-ATGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCAATAGTGCTTTAATT-----CCCC-----------C--CTTATAAAGATGTTAGTGGCATGCACGATTAATGTCATGC-AA-CATGTAGATACGCCCACAACATGAATTCACACGCACTTATATACATAACTCTGTCTATAAACAGGTTATG------TATATTTG---------ACACTCA----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCATAGTG-ATACTT--AG--AGACCTaatgatacatgtac
gi|3 : cccttACACACTGGATTACGAATT-G-ATGGT-GTAATGAA-C-A---ATTAA--GTTTT-ATAT-T-AA---CCTAAAATAACATACACAGACT-AACATATATATATATAT-GGACTACACGGGGCATAACGCAACCGA-AACAATAAAAGGAATTGTACAAGTCAACAATTGACTGAGGAGAAATTAA-TAA-AGTAAA--AACAATTTACAGGCGCATCCTTGCTTAT--GTCG---CCAAAAG--AAAATGG-AAGT--CCTGTTACTTG--G----ACGAACT-TGGCCCAAA-----TGCG-CCGATAGAGGATTATTT-----CCCC-----------T--C--ACGAAA-----------ATACACAATTGATTCCATGC-AAACATACAGGCACGTCCATAACATAAATTTTCACTCACCAATATACACAACTCTGTCTATAAACAGGGTATG------TATACCTA---------ATACTCG----GTACATTCATGCACT--TTACGTAAGAATTTA-CATGCC--AAACTACACGATATACAACGAGTAACA-A--------GGATACAATAACAGTATCATATACTCCAAGGCAGACCTggatta
gi|4 : acccaatggtgtgttataaatgatTATGTGTCAGAATGTAGCAGAACACACTGGAATGT---TT-T-GTGGTAGT--TTTA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACACAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACAAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATCATAAA--TAAAACTTATCGGCGCATCC--GCGTGT--ATTGAGTTCAATGGTGACAAGGT-ATGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCAATAATGTTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-CATATAGATACGCCCACAACATGAATTCACACGCACTTGTATACATAACTCTGTCTATAAACAGGTTATG------TTTATTTG---------ACACTCA----TGACTCTCATGCA-CAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGCAGTACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AAACCTggatta
gi|5 : ATGTGTAAGAACGTAAACGAACAAACTGGATTAT---TTCT-GTGGTAGT--TTAA-TTATTGATTAC--A-----ATAT-T-CAACACCTGGAGAGACATACAAAGTTT-A-CATCAATACA-----------AAACGTAACTAAACGAAACTAATAGCGATAAAAG------CACATATCAATAATAGATAAAGGAGAAACGAA-CAATAATAAAATTAAA--TTACTGGCGCATCA--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-AAGT--CTTGTCACTAG--C----TT--ACTGTGACTGAAC-----TGCG-CC-------------TT-----CTCC-----------C--CTTATGAAGGTGTTAGTGGTATGCACGATAAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTTCCACGCACTTTTATACATAACTCTGTCTATTAACAGGTTATG------TATATCTG---------ACACTCATGACTGACTCTCATGCA-TAATTACTTATACACTTA-GAATCCTAAAACAACACCGTGCATAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACTT
gi|6 : tccttgATGTGTAAGAACGTAAACGAACAAACTGGACTAT---TT-TTGTGGTAGT--TTAACT-ATTTATTAC--A-----ATAT-TTAAC-ACCTGGAGAGACATACAAAGTTT-A-CATCAATACA-----------AGACGTAACTAAACGAAACTAATAGCGATAAAAG------CACATATCAATAATAGATAAAGGAGAAACGAA-CAATAATAAAATTAAA--TTACTGGCGCATCA--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-AGGT--CTTGTCACTAG--C----TT--ACTGTGACTGAAC-----TGCG-CC-------------TT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGTATGCACGATAAATCACATGC-AA-CATATAGATACGCCCACAACATGAATTTCCACGCACTTTTATACATAACTCTGTCTATTAACAGGTTATG------TATATCTG---------ACACTCATGACTGACTCTCATGCA-TAATTACTTTTACACTTA-GAATCCTAAAACAACACCGTGCATAACAGGTAGCACA--------AAATATAATCACCGTAGTG-ATACTT--AG--AGACCTtgattac
gi|7 : tccttgTATGTGTCAGAATGTAGCAGAACACACTGGATTGG---TT-T-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAATACATACAAAGACT-A-CATAAATATATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAATGGAGAAACGAA-CAATAATAAA--TGAAACTTACCGTCGCATCC--ACGTGT--ACTGAGTTCAATAGTGACAAGG----------------TAA--G----TT--ACTCTGGCTGAAC-----TGCA-CCAATAATGCTTTAATT-----CCCT-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-CATATAGATATGCCCACAACATGAAATCACACGCACTTATATACATAACTCTGTC--------GG--------------ATTTG---------ACACTCG----TGACTCTCATGTA-TAATTGCTTAAACACTTA-CTTTCCTAAAACAACACCGTACACAATAGGTAGCACA--------AAATACAATCACCGTAGTG-AAACTT--AG--AGACCTtgattac
gi|8 : tTATGTGTCAGAATGTACCAAAACACACTGGATTGT---TT-G-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-GCCTGGACAGA-ATACAAATACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAA-CGAA-CAATAA------TAAA-----------TAT----G-GTAT--AT--------ATA-----AAGGT-ATGT--CTTGTCACTAA--G----TT--ACTCTGGTGGAAC-----TGCG-CCAATAATTCTGTAATT-----CCCC-----------C---TTATAAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-AATATAGATACGCCCACAACATGAATTCACACGCACTTATATACATAACGCTGTCTATAAACAGGTTATG------TATATTTG---------ACACTCA----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCTggatt
gi|9 : ctcTATGTGTCAGAATGTACCAAAACACACTGGATTGT---TT-G-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-ggatt
blockSeqs : C GAA CT AA C TA TA GGTTT . T AC A A AA T GAATTG A T T AT A TT . ATGAGT GT TC T TT G GA C TTGAA C G TTCTGT GTCCA TCTCCACCCCA AT A A A T T CATACA . ATGAC C T T GAGAAAAC T CA GC
blockSeqs : C . TT . . A . TTTT . . A . . TT . . A . T AT A . . ATGAGT GT T T . G . C . . A TGCTTT . . . G A . T A . . ATGAC . . T . . . .
blockSeqs : G . G . . A . . . . A . . TT . . A . T . A . . TTGAGT GT C T . G . C . . G AGGATT . . . C . . A A . . G . . T . . . .
blockSeqs : A . T . . A . . . . A . . TA . . A . T . A . . TCGAGT GT G A . G . C . . A TGTTTT . . . A . . T G . . A . . T . . . .
blockSeqs : A . G . . A . . . . C . . TT . . A . T . A . . TCGAGT GT T T . C . G . . G TGCTTT . . . G . . A T . . A . . T . . . .
blockSeqs : G . T . . . . . . . A . . TT . . A . T . A . . CTGAGT GT T A . C . G . . A TTCTGT . . . G . . C T . . G . . T . . . .
blockSeqs : C . T . . . . . . . A . . TT . . . . T . . . . TCG T T G . G . C . . A AGAGT . . . G . . C A . . A . . T . . . .
blockSeqs : C . G . . . . . . . . . . . . . . . . . . . . T G T T . G . C . . A AG . . . G . . A A . . G . . . .
blockSeqs : . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G . . A . . . A . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : G** A* ** NCGAGT GT G****** *********
originalCons : TATGTGTCAGAACGTANCAGAACACACTGGATTGT---TT-T-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-ANGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCGATAATGCTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTCNCACGCACTTNTATACATAACTCTGTCTATAAACAGGTTATG------TATATCTG---------ACACTCG----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCT
finalCons : TATGTGTCAGAACGTANCAGAACACACTGGATTGT---TTG--GTGGTAGT--TTAA-TA-TGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--GCGTGT--ANCGAGTTCAATAGTGACAAGGT-ANGT--CTTGTCACTAAG------TT--ACTCTGGCTGAAC-----TGCG-CCGATAATGCTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTCNCACGCACTTNTATACATAACTCTGTCTATAAACAGGTTATG------TATATCTG---------ACACTCG----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TAAATATTAACAAGTCACGGCATCTATAGAAAACAATCAAACAACAATAATAGTCTAATAAAATGCTGCCGTCAGATGTTATTTCTTCAATAGGTTTATTCCGGAAATGGTGCTCGTCACACATGCGCAAACTGAAAACACGAAATTTTTTAAATAGAATTTGCGTATCAAATATTCATAAAATAAACGCAGCATATACTTTGATGATTCGATAGAAAAAAATTAAATTTTATAGATAAGTTTCATCCGGCTCGACACAGAGCTGTCGATATAAATATTGATATTTAACGTGACTGGAATATGTCACGTATAAATTTCGAGTTGCAAGCTTGCGTAAAATTGATAATGCCATCGTCGATTATGTAAGAAAGCCGTTAGGAAACGTGTCTCACGACGATAGTCATCAATGTGTATGTTGAGGAATTGCCGGTTAAAACTTGATTCAACTACACAGGGACGACACTTGTAACCATTTTGGTATGTGATAGGTTATATACACTAGATCGCAATTAAAGGTGAATATTGGACCAGATATTTACATATAAACCTAAAATCACATACAGGACTAACGTA
Unaligned ( gi|16 ): TAACCATCTGGTGTGTAATAAACGCTATACGCTGGATTAAGTTTTGATGTTTGATGATTTAATGGACTATTAAAAGGTTTATATCATCGTGAAAAGACATACATAA
Unaligned ( gi|17 ): TAATTATACCAAACTACACCATATACAACGAGTAACAAAGATAATCTAACATTATCATATACTCCAATGCAGACCTGGATAA
Alignments
lowQualScore : 11 22 11111 111111 11 1111111 111111 11111111111 111111 111111111 11111 11111111
lowQualScore : 1 777 77 55 3 00 55 66666 3 4 77 4 4 44 4 111111 3 4 5 11 1 777 55 4 3 0 77 2 88 4444444 55 1 99999 3 7 222222 99999 77777777777 55 1 7 3 1 2 111111 0 666666666 88888 4 0 3 0 2 44444444 5 66 66
lowQualScore : . ... .. .. . .. .. ..... . . .. . . .. . ...... . . . .. . ... .. . . . .. . .. ....... .. . ..... . . ...... ..... ........... .. . . . . . ...... . ......... ..... . . . . . ........ . .. ..
lowQualScore : 0 000 00 00 6 55 00 88888 6 0 22 0 0 44 0 555555 2 0 7 00 9 000 55 9 2 8 00 3 66 1111111 00 4 11111 6 8 666666 11111 33333333333 00 2 3 6 0 4 555555 1 000000000 22222 0 9 6 2 1 55555555 0 99 99
consensus : TATGTGTCAGAACGTANCAGAACACACTGGATTGT---TTN-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-ANGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCGATAATGCTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTCNCACGCACTTNTATACATAACTCTGTCTATAAACAGGTTATG------TATATCTG---------ACACTCG----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCT
Reference ( family-4759 ) : TATGTGTCAGAACGTANCAGAACACACTGGATTGT---TTG-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--GCGTGT--ANCGAGTTCAATAGTGACAAGGT-ANGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCGATAATGCTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTCNCACGCACTTNTATACATAACTCTGTCTATAAACAGGTTATG------TATATCTG---------ACACTCG----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCT
gi|10 : ATGTGTAAGAACTTAGCAGAACAGACTGGATTGT---TTTTGTGGTAGC--TTAA-TTATGGATTAC--A-----ATATCT-AAA-ACCTGGAAAGACATACAAAGATT-A-CATAAATACATTGAC-AGACAAGACGTTACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATA
gi|10 : cttg--AACGAAACTAATAGCAATAA----AAGCA-CATGTCACTAATCGATACTT--ACTCTGGTTGAAC-----TGCG-CCAATAATGCTTTAATT-----CCCC-----------C--CTGATGAATATGTCAGTGGCATGCACGATTAATTCCATGC-AA-CATAAAGATACACCCACAACATGAATTCACACGCACATTTATACATACCTCTGTCCATAAACAGGTTATG------TATATCTGATGTATATAACACTCA----TGACTCTCATGCA-TCATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCGCA--------AAATACAATCACCcttactctggttgaactgcgccaataatgctttaattcccccctgatgaatatgtcagtggcatgcacgattaattccatgcaacataaagatacacccacaacatgaattcacacgcacatttatacatacctctgtccataaacaggttatgtatatctgatgtatataacactcatgactctcatgcatcattacttaaacacttacattcctaaaacaacaccgtacacaacaggtagcgcaaaatacaatcacc
gi|11 : cttgatgtgtaagaacttagcagaacagactggattgtttttgtggtagcttaattatggattacaatatctaaaacctggaaagacatacaaagattacataaatacattgacagacaagacgttactaTGGTGGT--TTAA-T---GGACTATTAAGGTTTATAT-T-AA---TCTGAAAAGACATACAAAGACTAA-CATAAATACAAAGGCTACACAGGGCATAACTAACCGAAAC-AATAGAAGGAATTG------CACAAGTCAAAAATCGACAAAGGAGACCTGAA-TAA-AATAAA--CTCAACTTATGAGCGCATCC--TTGTATACATCG---CCAAGA--GACAATGG-AAGT--CCTGTCACT-----------------TGGACGAACTTGAATGCACCCGATAGAG----AATTGTCCACCCCTCTCCACCCCAC--CCTACGAAGATGTTTGTAACGTGCATGATTAATTCCATGCAAA-CATATAGGAACGCCCACAGCATAAATTCTCACTTACCATCATACA
gi|12 : taaacctttggtgtgaaataaatgattcacgtcatgttcattatTATGTGTCAGAACGTACCAAAACACACTGGATTGT---TTG-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAGGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATCAAGGAGAA-CGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--ACGTGT--AATGAGTTCAATAGTGACAAGGT-ATGT--CCTGTCACTAA--G----TT--ACTCTGGTTGAAC-----TGCG-CCAATAATTCTGTAATT-----CTCC-----------A--CTTATAAAGGTGTTAGTGGCATGTACGATTAATCTCATGC-AA-CATATAGATACGCCCACAACATGAATTC
gi|13 : cctcAGAAGAAATAAATCAA--GTGAA--ACAAACTTACCGGCCCATCC--TTGTAT--A--------AAT--TGAAGAGGTCATGTTTCTTGG-ACAAA-------------TCTGACTCAAA-----TGCG-CCGATAAAGAGT-AATT-----CCTC-----------CATCCCACGAAGCTGTTAGTCACATGCACGATTTACTCCATGCAAA-TGTATAGGAACGCCCACAATATAATTTTTCA-------------ATTACTCTGTCTATAAACAGGTTATGCATACATGTACCTA---------ATACTCG----TGACATTCATGCA-CATCTACGTAAGAACTAA-CATACC--AAACTGCACCATATACGACGAGTAA---A--------AAAGATAAT
gi|14 : ggaccgAATATGTTATG------TTTATCTG---------ACACTTA----TGACATTCATGCA-TG--TA--TACACAA-TA-C------AAAACAACACCATTCACAACAAGTataacagtatcaaaaacatcaaaacatacctagat
gi|15 : ATATTTATCTTTCTTAAAATAACACCGTACACAGCAGGTAATACGGAGAAAACAAATACAATCACCGCAGTG-ATACCT--AG--AGACtataatggtaaaaattatagtaccatcaatgcaaattcggattacat
gi|2 : ttcatgtaaatTATGTGTCAGAATGTACCAGAACACACTGTATTGT---TTT-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACAAAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACAAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAA-CGAA-CAATAATAAA--TAAAACTTACCGGCGCATCC--ACGTGT--AATGAGTTCATTAGTGACAAGAC-ATGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCAATAGTGCTTTAATT-----CCCC-----------C--CTTATAAAGATGTTAGTGGCATGCACGATTAATGTCATGC-AA-CATGTAGATACGCCCACAACATGAATTCACACGCACTTATATACATAACTCTGTCTATAAACAGGTTATG------TATATTTG---------ACACTCA----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCATAGTG-ATACTT--AG--AGACCTaatgatacatgtac
gi|3 : cccttACACACTGGATTACGAATTG-ATGGT-GTAATGAA-C-A---ATTAA--GTTTT-ATAT-T-AA---CCTAAAATAACATACACAGACT-AACATATATATATATAT-GGACTACACGGGGCATAACGCAACCGA-AACAATAAAAGGAATTGTACAAGTCAACAATTGACTGAGGAGAAATTAA-TAA-AGTAAA--AACAATTTACAGGCGCATCCTTGCTTAT--GTCG---CCAAAAG--AAAATGG-AAGT--CCTGTTACTTG--G----ACGAACT-TGGCCCAAA-----TGCG-CCGATAGAGGATTATTT-----CCCC-----------T--C--ACGAAA-----------ATACACAATTGATTCCATGC-AAACATACAGGCACGTCCATAACATAAATTTTCACTCACCAATATACACAACTCTGTCTATAAACAGGGTATG------TATACCTA---------ATACTCG----GTACATTCATGCACT--TTACGTAAGAATTTA-CATGCC--AAACTACACGATATACAACGAGTAACA-A--------GGATACAATAACAGTATCATATACTCCAAGGCAGACCTggatta
gi|4 : acccaatggtgtgttataaatgatTATGTGTCAGAATGTAGCAGAACACACTGGAATGT---TTT-GTGGTAGT--TTTA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAAGACATACACAGACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACAAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAGAAACGAA-CAATCATAAA--TAAAACTTATCGGCGCATCC--GCGTGT--ATTGAGTTCAATGGTGACAAGGT-ATGT--CTTGTCACTAA--G----TT--ACTCTGGCTGAAC-----TGCG-CCAATAATGTTTTAATT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-CATATAGATACGCCCACAACATGAATTCACACGCACTTGTATACATAACTCTGTCTATAAACAGGTTATG------TTTATTTG---------ACACTCA----TGACTCTCATGCA-CAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGCAGTACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AAACCTggatta
gi|5 : ATGTGTAAGAACGTAAACGAACAAACTGGATTAT---TTCTGTGGTAGT--TTAA-TTATTGATTAC--A-----ATAT-T-CAACACCTGGAGAGACATACAAAGTTT-A-CATCAATACA-----------AAACGTAACTAAACGAAACTAATAGCGATAAAAG------CACATATCAATAATAGATAAAGGAGAAACGAA-CAATAATAAAATTAAA--TTACTGGCGCATCA--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-AAGT--CTTGTCACTAG--C----TT--ACTGTGACTGAAC-----TGCG-CC-------------TT-----CTCC-----------C--CTTATGAAGGTGTTAGTGGTATGCACGATAAATCCCATGC-AA-CATATAGATACGCCCACAACATGAATTTCCACGCACTTTTATACATAACTCTGTCTATTAACAGGTTATG------TATATCTG---------ACACTCATGACTGACTCTCATGCA-TAATTACTTATACACTTA-GAATCCTAAAACAACACCGTGCATAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACTT
gi|6 : tccttgATGTGTAAGAACGTAAACGAACAAACTGGACTAT---TTTTGTGGTAGT--TTAACT-ATTTATTAC--A-----ATAT-TTAAC-ACCTGGAGAGACATACAAAGTTT-A-CATCAATACA-----------AGACGTAACTAAACGAAACTAATAGCGATAAAAG------CACATATCAATAATAGATAAAGGAGAAACGAA-CAATAATAAAATTAAA--TTACTGGCGCATCA--GCGTGT--ATCGAGTTCAATAGTGACAAGGT-AGGT--CTTGTCACTAG--C----TT--ACTGTGACTGAAC-----TGCG-CC-------------TT-----CCCC-----------C--CTTATGAAGGTGTTAGTGGTATGCACGATAAATCACATGC-AA-CATATAGATACGCCCACAACATGAATTTCCACGCACTTTTATACATAACTCTGTCTATTAACAGGTTATG------TATATCTG---------ACACTCATGACTGACTCTCATGCA-TAATTACTTTTACACTTA-GAATCCTAAAACAACACCGTGCATAACAGGTAGCACA--------AAATATAATCACCGTAGTG-ATACTT--AG--AGACCTtgattac
gi|7 : tccttgTATGTGTCAGAATGTAGCAGAACACACTGGATTGG---TTT-GTGGTAGT--TTAA-T-ATGGATTAC--A-----ATAT-T-AAA-ACCTGGAAATACATACAAAGACT-A-CATAAATATATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAATGGAGAAACGAA-CAATAATAAA--TGAAACTTACCGTCGCATCC--ACGTGT--ACTGAGTTCAATAGTGACAAGG----------------TAA--G----TT--ACTCTGGCTGAAC-----TGCA-CCAATAATGCTTTAATT-----CCCT-----------C--CTTATGAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-CATATAGATATGCCCACAACATGAAATCACACGCACTTATATACATAACTCTGTC--------GG--------------ATTTG---------ACACTCG----TGACTCTCATGTA-TAATTGCTTAAACACTTA-CTTTCCTAAAACAACACCGTACACAATAGGTAGCACA--------AAATACAATCACCGTAGTG-AAACTT--AG--AGACCTtgattac
gi|8 : tTATGTGTCAGAATGTACCAAAACACACTGGATTGT---TTG-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-T-AAA-GCCTGGACAGA-ATACAAATACT-A-CATAAATACATTGAC-AGACAAGACGTAACTAAACGAAACTAATAGCAATAAAAG------CACATGTCACTAATCGATAAAGGAG-AACGAA-CAATAATAAA--TAggatt
gi|8 : ctcAAGGT-ATGT--CTTGTCACTAA--G----TT--ACTCTGGTGGAAC-----TGCG-CCAATAATTCTGTAATT-----CCCC-----------C---TTATAAAGGTGTTAGTGGCATGCACGATTAATCTCATGC-AA-AATATAGATACGCCCACAACATGAATTCACACGCACTTATATACATAACGCTGTCTATAAACAGGTTATG------TATATTTG---------ACACTCA----TGACTCTCATGCA-TAATTACTTAAACACTTA-CATTCCTAAAACAACACCGTACACAACAGGTAGCACA--------AAATACAATCACCGTAGTG-ATACTT--AG--AGACCTtggtatatataaaggtatgtcttgtcactaagttactctggtggaactgcgccaataattctgtaattcccccttataaaggtgttagtggcatgcacgattaatctcatgcaaaatatagatacgcccacaacatgaattcacacgcacttatatacataacgctgtctataaacaggttatgtatatttgacactcatgactctcatgcataattacttaaacacttacattcctaaaacaacaccgtacacaacaggtagcacaaaatacaatcaccgtagtgatacttagagacctggatt
gi|9 : ctctatgtgtcagaatgtaccaaaacacactggattgtttggtggtagtttaattggattacaatattaaagcctggacagaatacaaatactacataaatacattgacagacaagacgtaactaaacgaaactaatagcaataaaagcacatgtcactaatcgataaaggagaacgaacaataataaatatggtatatataTATGTGTCAGAATGTACCAAAACACACTGGATTGT---TTG-GTGGTAGT--TTAA-T--TGGATTAC--A-----ATAT-ggatt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TAAATATTAACAAGTCACGGCATCTATAGAAAACAATCAAACAACAATAATAGTCTAATAAAATGCTGCCGTCAGATGTTATTTCTTCAATAGGTTTATTCCGGAAATGGTGCTCGTCACACATGCGCAAACTGAAAACACGAAATTTTTTAAATAGAATTTGCGTATCAAATATTCATAAAATAAACGCAGCATATACTTTGATGATTCGATAGAAAAAAATTAAATTTTATAGATAAGTTTCATCCGGCTCGACACAGAGCTGTCGATATAAATATTGATATTTAACGTGACTGGAATATGTCACGTATAAATTTCGAGTTGCAAGCTTGCGTAAAATTGATAATGCCATCGTCGATTATGTAAGAAAGCCGTTAGGAAACGTGTCTCACGACGATAGTCATCAATGTGTATGTTGAGGAATTGCCGGTTAAAACTTGATTCAACTACACAGGGACGACACTTGTAACCATTTTGGTATGTGATAGGTTATATACACTAGATCGCAATTAAAGGTGAATATTGGACCAGATATTTACATATAAACCTAAAATCACATACAGGACTAACGTA
Unaligned ( gi|16 ): TAACCATCTGGTGTGTAATAAACGCTATACGCTGGATTAAGTTTTGATGTTTGATGATTTAATGGACTATTAAAAGGTTTATATCATCGTGAAAAGACATACATAA
Unaligned ( gi|17 ): TAATTATACCAAACTACACCATATACAACGAGTAACAAAGATAATCTAACATTATCATATACTCCAATGCAGACCTGGATAA